Multiple sequence alignment - TraesCS4B01G274200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G274200 chr4B 100.000 5798 0 0 1 5798 552013074 552018871 0.000000e+00 10707.0
1 TraesCS4B01G274200 chr4B 88.462 78 4 1 2146 2218 552015123 552015200 8.000000e-14 89.8
2 TraesCS4B01G274200 chr4B 88.462 78 4 1 2050 2127 552015219 552015291 8.000000e-14 89.8
3 TraesCS4B01G274200 chr4A 94.148 1555 55 19 2050 3586 24767102 24765566 0.000000e+00 2335.0
4 TraesCS4B01G274200 chr4A 94.506 1256 38 13 818 2050 24768395 24767148 0.000000e+00 1908.0
5 TraesCS4B01G274200 chr4A 88.579 1576 96 45 4271 5798 24764803 24763264 0.000000e+00 1836.0
6 TraesCS4B01G274200 chr4A 96.208 712 14 5 3572 4275 24765550 24764844 0.000000e+00 1153.0
7 TraesCS4B01G274200 chr4A 88.988 672 65 8 3534 4200 621565400 621564733 0.000000e+00 822.0
8 TraesCS4B01G274200 chr4A 85.223 494 58 8 1168 1648 621567423 621566932 1.450000e-135 494.0
9 TraesCS4B01G274200 chr4A 89.024 246 27 0 1788 2033 621566853 621566608 7.300000e-79 305.0
10 TraesCS4B01G274200 chr4A 76.250 640 110 33 173 789 24769390 24768770 9.440000e-78 302.0
11 TraesCS4B01G274200 chr4A 88.415 164 19 0 4636 4799 621564194 621564031 1.270000e-46 198.0
12 TraesCS4B01G274200 chr4A 90.780 141 13 0 37 177 669482823 669482963 7.670000e-44 189.0
13 TraesCS4B01G274200 chr4A 88.889 90 9 1 2130 2219 24767118 24767030 6.140000e-20 110.0
14 TraesCS4B01G274200 chr4D 89.134 1905 130 42 173 2050 442894200 442896054 0.000000e+00 2300.0
15 TraesCS4B01G274200 chr4D 89.631 1572 77 43 4271 5798 442898329 442899858 0.000000e+00 1921.0
16 TraesCS4B01G274200 chr4D 93.640 1195 65 7 3069 4255 442897078 442898269 0.000000e+00 1775.0
17 TraesCS4B01G274200 chr4D 84.242 660 60 23 2126 2780 442896080 442896700 2.310000e-168 603.0
18 TraesCS4B01G274200 chr4D 93.162 351 18 4 2780 3128 442896731 442897077 1.440000e-140 510.0
19 TraesCS4B01G274200 chr4D 87.692 65 7 1 2062 2126 442896101 442896164 2.240000e-09 75.0
20 TraesCS4B01G274200 chr5D 88.743 684 57 10 3534 4200 547608656 547607976 0.000000e+00 819.0
21 TraesCS4B01G274200 chr5D 86.762 491 51 9 1168 1648 547610633 547610147 8.550000e-148 534.0
22 TraesCS4B01G274200 chr5D 88.211 246 29 0 1788 2033 547610072 547609827 1.580000e-75 294.0
23 TraesCS4B01G274200 chr5D 88.415 164 19 0 4636 4799 547607432 547607269 1.270000e-46 198.0
24 TraesCS4B01G274200 chrUn 88.596 684 58 10 3534 4200 68496565 68495885 0.000000e+00 813.0
25 TraesCS4B01G274200 chrUn 85.947 491 55 9 1168 1648 68509163 68508677 4.010000e-141 512.0
26 TraesCS4B01G274200 chrUn 87.805 246 30 0 1788 2033 68508602 68508357 7.350000e-74 289.0
27 TraesCS4B01G274200 chrUn 87.805 164 20 0 4636 4799 68495341 68495178 5.930000e-45 193.0
28 TraesCS4B01G274200 chr5B 87.910 670 73 8 3534 4200 690908135 690908799 0.000000e+00 782.0
29 TraesCS4B01G274200 chr5B 86.089 496 44 17 1168 1648 690906396 690906881 1.440000e-140 510.0
30 TraesCS4B01G274200 chr5B 84.838 277 42 0 1771 2047 690906926 690907202 4.420000e-71 279.0
31 TraesCS4B01G274200 chr5B 88.000 175 17 3 1 173 541127274 541127446 2.740000e-48 204.0
32 TraesCS4B01G274200 chr5B 85.475 179 26 0 4621 4799 690909322 690909500 2.760000e-43 187.0
33 TraesCS4B01G274200 chr5B 90.000 140 14 0 33 172 532463752 532463613 1.280000e-41 182.0
34 TraesCS4B01G274200 chr7D 93.897 213 11 2 1437 1648 180440130 180440341 2.610000e-83 320.0
35 TraesCS4B01G274200 chr6D 92.019 213 15 2 1437 1648 150886171 150885960 1.220000e-76 298.0
36 TraesCS4B01G274200 chr6D 85.294 68 9 1 419 485 69933298 69933231 1.040000e-07 69.4
37 TraesCS4B01G274200 chr3A 92.019 213 15 2 1437 1648 703853064 703852853 1.220000e-76 298.0
38 TraesCS4B01G274200 chr3A 79.736 227 33 7 424 638 432856168 432856393 1.010000e-32 152.0
39 TraesCS4B01G274200 chr7B 95.758 165 6 1 2615 2778 643031433 643031597 1.240000e-66 265.0
40 TraesCS4B01G274200 chr7B 86.932 176 19 3 1 174 26255867 26255694 1.650000e-45 195.0
41 TraesCS4B01G274200 chr7B 98.305 59 1 0 2840 2898 643031602 643031660 2.860000e-18 104.0
42 TraesCS4B01G274200 chr6B 86.096 187 24 2 1 187 683125192 683125008 3.540000e-47 200.0
43 TraesCS4B01G274200 chr6B 86.628 172 18 4 1 170 571743753 571743585 9.920000e-43 185.0
44 TraesCS4B01G274200 chr2B 91.241 137 11 1 37 173 687294640 687294505 9.920000e-43 185.0
45 TraesCS4B01G274200 chr2B 85.714 175 23 2 1 174 503654653 503654826 3.570000e-42 183.0
46 TraesCS4B01G274200 chr3B 87.013 154 18 2 33 186 133092223 133092072 7.720000e-39 172.0
47 TraesCS4B01G274200 chr3B 76.786 224 33 8 424 638 418888279 418888492 2.210000e-19 108.0
48 TraesCS4B01G274200 chr3B 75.000 220 41 9 419 626 226515782 226515565 8.000000e-14 89.8
49 TraesCS4B01G274200 chr3B 81.915 94 10 4 89 179 536393415 536393326 8.060000e-09 73.1
50 TraesCS4B01G274200 chr3D 77.169 219 37 8 419 626 154603711 154603927 1.320000e-21 115.0
51 TraesCS4B01G274200 chr5A 95.745 47 2 0 581 627 673555320 673555274 6.230000e-10 76.8
52 TraesCS4B01G274200 chr2D 87.879 66 6 2 562 627 512680611 512680674 6.230000e-10 76.8
53 TraesCS4B01G274200 chr2A 86.364 66 7 2 562 627 656232718 656232781 2.900000e-08 71.3
54 TraesCS4B01G274200 chr1A 87.302 63 6 2 562 624 472170230 472170290 2.900000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G274200 chr4B 552013074 552018871 5797 False 3628.866667 10707 92.308000 1 5798 3 chr4B.!!$F1 5797
1 TraesCS4B01G274200 chr4A 24763264 24769390 6126 True 1274.000000 2335 89.763333 173 5798 6 chr4A.!!$R1 5625
2 TraesCS4B01G274200 chr4A 621564031 621567423 3392 True 454.750000 822 87.912500 1168 4799 4 chr4A.!!$R2 3631
3 TraesCS4B01G274200 chr4D 442894200 442899858 5658 False 1197.333333 2300 89.583500 173 5798 6 chr4D.!!$F1 5625
4 TraesCS4B01G274200 chr5D 547607269 547610633 3364 True 461.250000 819 88.032750 1168 4799 4 chr5D.!!$R1 3631
5 TraesCS4B01G274200 chrUn 68495178 68496565 1387 True 503.000000 813 88.200500 3534 4799 2 chrUn.!!$R1 1265
6 TraesCS4B01G274200 chrUn 68508357 68509163 806 True 400.500000 512 86.876000 1168 2033 2 chrUn.!!$R2 865
7 TraesCS4B01G274200 chr5B 690906396 690909500 3104 False 439.500000 782 86.078000 1168 4799 4 chr5B.!!$F2 3631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.031917 TGGCAGTTATCGGGACCCTA 60.032 55.0 9.41 0.0 0.00 3.53 F
835 1222 0.108329 CATTAACCGCCTGAGACCGT 60.108 55.0 0.00 0.0 0.00 4.83 F
1480 1907 0.394762 GCAAGATCCAGGCCATCACA 60.395 55.0 5.01 0.0 0.00 3.58 F
2143 2633 0.183014 TACCAAGTGTTTTCCGGGCA 59.817 50.0 0.00 0.0 0.00 5.36 F
3453 4219 0.322456 TAGCCTTGTCCATGTGGTGC 60.322 55.0 0.00 0.0 36.34 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 2096 0.817654 TCAGAGCGTGGGAGTGTATG 59.182 55.000 0.00 0.00 0.00 2.39 R
2128 2618 1.480789 AAGTTGCCCGGAAAACACTT 58.519 45.000 17.97 9.44 0.00 3.16 R
2413 2910 2.028112 CCTAGCAAGTAAGTGCCACTGA 60.028 50.000 0.00 0.00 46.14 3.41 R
4020 4857 1.535028 TGTGTCAAAATAGCACAGCGG 59.465 47.619 0.00 0.00 38.09 5.52 R
4848 5895 0.466189 ACCCAAGTGCTGGTGACAAG 60.466 55.000 0.00 0.00 44.76 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.225235 GGCTGCTGGGTCCTCTAG 58.775 66.667 0.00 0.00 0.00 2.43
18 19 2.503546 GCTGCTGGGTCCTCTAGC 59.496 66.667 0.00 6.43 37.93 3.42
19 20 3.100503 GCTGCTGGGTCCTCTAGCC 62.101 68.421 9.72 0.00 46.67 3.93
20 21 2.365635 TGCTGGGTCCTCTAGCCC 60.366 66.667 9.72 0.00 45.86 5.19
24 25 3.851128 GGGTCCTCTAGCCCGCAC 61.851 72.222 0.00 0.00 40.09 5.34
25 26 4.208686 GGTCCTCTAGCCCGCACG 62.209 72.222 0.00 0.00 0.00 5.34
26 27 3.450115 GTCCTCTAGCCCGCACGT 61.450 66.667 0.00 0.00 0.00 4.49
27 28 3.138798 TCCTCTAGCCCGCACGTC 61.139 66.667 0.00 0.00 0.00 4.34
28 29 4.208686 CCTCTAGCCCGCACGTCC 62.209 72.222 0.00 0.00 0.00 4.79
29 30 3.449227 CTCTAGCCCGCACGTCCA 61.449 66.667 0.00 0.00 0.00 4.02
30 31 3.417275 CTCTAGCCCGCACGTCCAG 62.417 68.421 0.00 0.00 0.00 3.86
31 32 3.449227 CTAGCCCGCACGTCCAGA 61.449 66.667 0.00 0.00 0.00 3.86
32 33 3.701604 CTAGCCCGCACGTCCAGAC 62.702 68.421 0.00 0.00 0.00 3.51
42 43 2.110213 GTCCAGACGGTGTTGCCA 59.890 61.111 0.00 0.00 36.97 4.92
43 44 2.110213 TCCAGACGGTGTTGCCAC 59.890 61.111 0.00 0.00 41.06 5.01
44 45 2.203139 CCAGACGGTGTTGCCACA 60.203 61.111 0.00 0.00 43.71 4.17
52 53 2.515057 TGTTGCCACACACCGGAC 60.515 61.111 9.46 0.00 0.00 4.79
53 54 3.645975 GTTGCCACACACCGGACG 61.646 66.667 9.46 0.00 0.00 4.79
54 55 4.164087 TTGCCACACACCGGACGT 62.164 61.111 9.46 0.78 0.00 4.34
101 102 3.656045 GGTCGTGCGGGTTGGTTG 61.656 66.667 0.00 0.00 0.00 3.77
102 103 4.322385 GTCGTGCGGGTTGGTTGC 62.322 66.667 0.00 0.00 0.00 4.17
103 104 4.555709 TCGTGCGGGTTGGTTGCT 62.556 61.111 0.00 0.00 0.00 3.91
104 105 4.326766 CGTGCGGGTTGGTTGCTG 62.327 66.667 0.00 0.00 0.00 4.41
105 106 3.216292 GTGCGGGTTGGTTGCTGT 61.216 61.111 0.00 0.00 0.00 4.40
106 107 2.904866 TGCGGGTTGGTTGCTGTC 60.905 61.111 0.00 0.00 0.00 3.51
107 108 3.670377 GCGGGTTGGTTGCTGTCC 61.670 66.667 0.00 0.00 0.00 4.02
108 109 2.203280 CGGGTTGGTTGCTGTCCA 60.203 61.111 0.00 0.00 0.00 4.02
109 110 1.603455 CGGGTTGGTTGCTGTCCAT 60.603 57.895 0.00 0.00 34.75 3.41
110 111 1.865788 CGGGTTGGTTGCTGTCCATG 61.866 60.000 0.00 0.00 34.75 3.66
111 112 1.290009 GGTTGGTTGCTGTCCATGC 59.710 57.895 0.00 0.00 34.75 4.06
112 113 1.290009 GTTGGTTGCTGTCCATGCC 59.710 57.895 0.00 0.00 34.75 4.40
113 114 1.152589 TTGGTTGCTGTCCATGCCA 60.153 52.632 0.00 0.00 34.75 4.92
114 115 1.462731 TTGGTTGCTGTCCATGCCAC 61.463 55.000 0.00 0.00 34.75 5.01
115 116 1.902918 GGTTGCTGTCCATGCCACA 60.903 57.895 0.00 0.00 0.00 4.17
116 117 1.286880 GTTGCTGTCCATGCCACAC 59.713 57.895 0.00 0.00 0.00 3.82
117 118 2.260154 TTGCTGTCCATGCCACACG 61.260 57.895 0.00 0.00 0.00 4.49
118 119 2.358615 GCTGTCCATGCCACACGA 60.359 61.111 0.00 0.00 0.00 4.35
119 120 2.393768 GCTGTCCATGCCACACGAG 61.394 63.158 0.00 0.00 0.00 4.18
120 121 1.742880 CTGTCCATGCCACACGAGG 60.743 63.158 0.00 0.00 0.00 4.63
146 147 3.411517 CGGATTCCTGCCCACCCT 61.412 66.667 0.30 0.00 0.00 4.34
147 148 2.070039 CGGATTCCTGCCCACCCTA 61.070 63.158 0.30 0.00 0.00 3.53
148 149 1.532238 GGATTCCTGCCCACCCTAC 59.468 63.158 0.00 0.00 0.00 3.18
149 150 1.279025 GGATTCCTGCCCACCCTACA 61.279 60.000 0.00 0.00 0.00 2.74
150 151 0.107165 GATTCCTGCCCACCCTACAC 60.107 60.000 0.00 0.00 0.00 2.90
151 152 1.910580 ATTCCTGCCCACCCTACACG 61.911 60.000 0.00 0.00 0.00 4.49
152 153 3.319198 CCTGCCCACCCTACACGT 61.319 66.667 0.00 0.00 0.00 4.49
153 154 2.047274 CTGCCCACCCTACACGTG 60.047 66.667 15.48 15.48 0.00 4.49
154 155 2.845317 TGCCCACCCTACACGTGT 60.845 61.111 26.52 26.52 0.00 4.49
155 156 2.358247 GCCCACCCTACACGTGTG 60.358 66.667 30.83 19.25 0.00 3.82
157 158 2.358247 CCACCCTACACGTGTGGC 60.358 66.667 30.83 0.00 42.71 5.01
158 159 2.423874 CACCCTACACGTGTGGCA 59.576 61.111 30.83 10.59 34.19 4.92
159 160 1.667830 CACCCTACACGTGTGGCAG 60.668 63.158 30.83 22.13 34.19 4.85
160 161 2.138179 ACCCTACACGTGTGGCAGT 61.138 57.895 30.83 22.75 34.19 4.40
161 162 1.070786 CCCTACACGTGTGGCAGTT 59.929 57.895 30.83 4.50 34.19 3.16
162 163 0.319083 CCCTACACGTGTGGCAGTTA 59.681 55.000 30.83 8.21 34.19 2.24
163 164 1.066430 CCCTACACGTGTGGCAGTTAT 60.066 52.381 30.83 2.89 34.19 1.89
164 165 2.268298 CCTACACGTGTGGCAGTTATC 58.732 52.381 30.83 0.00 34.19 1.75
165 166 1.917955 CTACACGTGTGGCAGTTATCG 59.082 52.381 30.83 0.00 34.19 2.92
166 167 0.669318 ACACGTGTGGCAGTTATCGG 60.669 55.000 22.71 0.00 34.19 4.18
167 168 1.079405 ACGTGTGGCAGTTATCGGG 60.079 57.895 0.00 0.00 0.00 5.14
168 169 1.216977 CGTGTGGCAGTTATCGGGA 59.783 57.895 0.00 0.00 0.00 5.14
169 170 1.082117 CGTGTGGCAGTTATCGGGAC 61.082 60.000 0.00 0.00 0.00 4.46
170 171 0.743345 GTGTGGCAGTTATCGGGACC 60.743 60.000 0.00 0.00 0.00 4.46
171 172 1.153229 GTGGCAGTTATCGGGACCC 60.153 63.158 0.00 0.00 0.00 4.46
172 173 1.306654 TGGCAGTTATCGGGACCCT 60.307 57.895 9.41 0.00 0.00 4.34
173 174 0.031917 TGGCAGTTATCGGGACCCTA 60.032 55.000 9.41 0.00 0.00 3.53
174 175 0.680061 GGCAGTTATCGGGACCCTAG 59.320 60.000 9.41 0.00 0.00 3.02
175 176 1.700955 GCAGTTATCGGGACCCTAGA 58.299 55.000 9.41 0.00 0.00 2.43
176 177 2.249139 GCAGTTATCGGGACCCTAGAT 58.751 52.381 9.41 7.54 0.00 1.98
177 178 2.633481 GCAGTTATCGGGACCCTAGATT 59.367 50.000 9.41 0.00 0.00 2.40
178 179 3.071167 GCAGTTATCGGGACCCTAGATTT 59.929 47.826 9.41 0.00 0.00 2.17
179 180 4.444449 GCAGTTATCGGGACCCTAGATTTT 60.444 45.833 9.41 0.00 0.00 1.82
185 186 2.438392 CGGGACCCTAGATTTTTAGGCT 59.562 50.000 9.41 0.00 39.13 4.58
188 189 4.202440 GGGACCCTAGATTTTTAGGCTACC 60.202 50.000 2.09 0.00 39.13 3.18
195 196 4.292643 AGATTTTTAGGCTACCCCTACGA 58.707 43.478 0.00 0.00 45.90 3.43
206 207 1.002773 ACCCCTACGAATTGCGAAACT 59.997 47.619 0.00 0.00 44.57 2.66
207 208 1.396996 CCCCTACGAATTGCGAAACTG 59.603 52.381 0.00 0.00 44.57 3.16
219 220 1.944709 GCGAAACTGTTGTACCTTGGT 59.055 47.619 0.00 0.00 0.00 3.67
220 221 2.356695 GCGAAACTGTTGTACCTTGGTT 59.643 45.455 0.00 0.00 0.00 3.67
223 224 4.274950 CGAAACTGTTGTACCTTGGTTGAT 59.725 41.667 0.00 0.00 0.00 2.57
225 226 5.514274 AACTGTTGTACCTTGGTTGATTG 57.486 39.130 0.00 0.00 0.00 2.67
229 231 5.441500 TGTTGTACCTTGGTTGATTGAGAA 58.558 37.500 0.00 0.00 0.00 2.87
246 248 9.187996 TGATTGAGAATTGGTTATTTCTATGCA 57.812 29.630 0.00 0.00 0.00 3.96
250 252 8.677300 TGAGAATTGGTTATTTCTATGCAAGAC 58.323 33.333 0.00 0.00 32.51 3.01
251 253 7.697691 AGAATTGGTTATTTCTATGCAAGACG 58.302 34.615 0.00 0.00 32.51 4.18
252 254 7.552687 AGAATTGGTTATTTCTATGCAAGACGA 59.447 33.333 0.00 0.00 32.51 4.20
253 255 7.624360 ATTGGTTATTTCTATGCAAGACGAA 57.376 32.000 0.00 0.00 32.51 3.85
254 256 6.662414 TGGTTATTTCTATGCAAGACGAAG 57.338 37.500 0.00 0.00 32.51 3.79
255 257 6.403049 TGGTTATTTCTATGCAAGACGAAGA 58.597 36.000 0.00 0.00 32.51 2.87
256 258 6.312918 TGGTTATTTCTATGCAAGACGAAGAC 59.687 38.462 0.00 0.00 32.51 3.01
274 276 4.993705 AGACCATCTAAAAGACCAACCA 57.006 40.909 0.00 0.00 0.00 3.67
277 279 7.027874 AGACCATCTAAAAGACCAACCAATA 57.972 36.000 0.00 0.00 0.00 1.90
286 288 5.391312 AAGACCAACCAATATGAACTTGC 57.609 39.130 0.00 0.00 0.00 4.01
307 309 8.487176 ACTTGCGTTCATGATTTTATCAAAAAC 58.513 29.630 0.00 0.00 43.50 2.43
315 317 8.646004 TCATGATTTTATCAAAAACCCAACTCA 58.354 29.630 0.00 0.00 43.50 3.41
329 331 1.071471 ACTCAAGAGTTGTGGGCCG 59.929 57.895 0.00 0.00 38.83 6.13
335 337 3.628646 GAGTTGTGGGCCGAGGCAT 62.629 63.158 16.65 0.00 44.11 4.40
339 341 2.044946 GTGGGCCGAGGCATTCTT 60.045 61.111 16.65 0.00 44.11 2.52
343 345 2.464459 GGCCGAGGCATTCTTGTCG 61.464 63.158 16.65 0.00 44.11 4.35
345 347 2.464459 CCGAGGCATTCTTGTCGGC 61.464 63.158 0.00 0.00 44.99 5.54
350 352 0.451783 GGCATTCTTGTCGGCGAAAT 59.548 50.000 12.92 4.71 0.00 2.17
369 371 5.576384 CGAAATGGGGATTAACATTGTTGTG 59.424 40.000 12.30 0.00 37.38 3.33
408 410 1.745566 CATATCACATGCGCAAACGG 58.254 50.000 17.11 7.23 40.57 4.44
411 413 0.109781 ATCACATGCGCAAACGGTTC 60.110 50.000 17.11 0.00 40.57 3.62
415 417 1.810151 ACATGCGCAAACGGTTCTATT 59.190 42.857 17.11 0.00 40.57 1.73
469 471 5.761165 TTTAGGGCTAAAAATATGACGCC 57.239 39.130 0.00 0.00 32.64 5.68
470 472 3.577805 AGGGCTAAAAATATGACGCCT 57.422 42.857 0.00 0.00 37.66 5.52
471 473 3.477530 AGGGCTAAAAATATGACGCCTC 58.522 45.455 0.00 0.00 37.66 4.70
472 474 3.118038 AGGGCTAAAAATATGACGCCTCA 60.118 43.478 0.00 0.00 37.66 3.86
473 475 3.251004 GGGCTAAAAATATGACGCCTCAG 59.749 47.826 0.00 0.00 37.66 3.35
474 476 4.127171 GGCTAAAAATATGACGCCTCAGA 58.873 43.478 0.00 0.00 34.80 3.27
475 477 4.757149 GGCTAAAAATATGACGCCTCAGAT 59.243 41.667 0.00 0.00 34.80 2.90
476 478 5.932303 GGCTAAAAATATGACGCCTCAGATA 59.068 40.000 0.00 0.00 34.80 1.98
477 479 6.595716 GGCTAAAAATATGACGCCTCAGATAT 59.404 38.462 0.00 0.00 34.80 1.63
478 480 7.413438 GGCTAAAAATATGACGCCTCAGATATG 60.413 40.741 0.00 0.00 34.80 1.78
479 481 7.118390 GCTAAAAATATGACGCCTCAGATATGT 59.882 37.037 0.00 0.00 27.81 2.29
480 482 7.426929 AAAAATATGACGCCTCAGATATGTC 57.573 36.000 0.00 0.00 27.81 3.06
481 483 2.713895 ATGACGCCTCAGATATGTCG 57.286 50.000 0.00 0.00 32.32 4.35
482 484 0.668535 TGACGCCTCAGATATGTCGG 59.331 55.000 0.00 0.00 32.32 4.79
483 485 0.952280 GACGCCTCAGATATGTCGGA 59.048 55.000 3.22 0.00 0.00 4.55
484 486 1.542030 GACGCCTCAGATATGTCGGAT 59.458 52.381 3.22 0.00 0.00 4.18
506 525 1.662629 CCGATCGCATCCATAGCAATC 59.337 52.381 10.32 0.00 0.00 2.67
510 529 4.567959 CGATCGCATCCATAGCAATCAATA 59.432 41.667 0.26 0.00 0.00 1.90
540 559 5.467735 AGCTTGGCAATTTTTCTGTTGATTC 59.532 36.000 0.00 0.00 0.00 2.52
547 566 7.003648 GCAATTTTTCTGTTGATTCTTTACGC 58.996 34.615 0.00 0.00 0.00 4.42
549 568 9.393249 CAATTTTTCTGTTGATTCTTTACGCTA 57.607 29.630 0.00 0.00 0.00 4.26
552 571 7.667043 TTTCTGTTGATTCTTTACGCTACAT 57.333 32.000 0.00 0.00 0.00 2.29
554 573 6.394809 TCTGTTGATTCTTTACGCTACATGA 58.605 36.000 0.00 0.00 0.00 3.07
558 577 6.403333 TGATTCTTTACGCTACATGACAAC 57.597 37.500 0.00 0.00 0.00 3.32
559 578 5.929415 TGATTCTTTACGCTACATGACAACA 59.071 36.000 0.00 0.00 0.00 3.33
560 579 5.585500 TTCTTTACGCTACATGACAACAC 57.415 39.130 0.00 0.00 0.00 3.32
569 595 4.452114 GCTACATGACAACACAGAACATGA 59.548 41.667 0.00 0.00 40.13 3.07
574 600 5.635417 TGACAACACAGAACATGACAAAA 57.365 34.783 0.00 0.00 0.00 2.44
576 602 6.264832 TGACAACACAGAACATGACAAAATC 58.735 36.000 0.00 0.00 0.00 2.17
577 603 5.591099 ACAACACAGAACATGACAAAATCC 58.409 37.500 0.00 0.00 0.00 3.01
579 605 6.127366 ACAACACAGAACATGACAAAATCCTT 60.127 34.615 0.00 0.00 0.00 3.36
580 606 7.068103 ACAACACAGAACATGACAAAATCCTTA 59.932 33.333 0.00 0.00 0.00 2.69
581 607 6.970484 ACACAGAACATGACAAAATCCTTAC 58.030 36.000 0.00 0.00 0.00 2.34
593 619 4.789012 AAATCCTTACACACAAGCATGG 57.211 40.909 0.00 0.00 0.00 3.66
594 620 2.949177 TCCTTACACACAAGCATGGT 57.051 45.000 0.00 0.00 0.00 3.55
621 647 3.598019 ATCTGTTTTCGCATGGCAAAT 57.402 38.095 0.00 0.00 0.00 2.32
622 648 2.945278 TCTGTTTTCGCATGGCAAATC 58.055 42.857 0.00 0.00 0.00 2.17
624 650 2.664568 CTGTTTTCGCATGGCAAATCTG 59.335 45.455 0.00 0.00 0.00 2.90
625 651 2.295629 TGTTTTCGCATGGCAAATCTGA 59.704 40.909 0.00 0.00 0.00 3.27
629 655 5.518848 TTTCGCATGGCAAATCTGATTAT 57.481 34.783 2.85 0.00 0.00 1.28
632 658 4.214758 TCGCATGGCAAATCTGATTATCAG 59.785 41.667 15.53 15.53 45.59 2.90
633 659 4.235360 GCATGGCAAATCTGATTATCAGC 58.765 43.478 16.72 6.13 43.95 4.26
634 660 4.022242 GCATGGCAAATCTGATTATCAGCT 60.022 41.667 16.72 5.01 43.95 4.24
635 661 5.509163 GCATGGCAAATCTGATTATCAGCTT 60.509 40.000 16.72 11.07 43.95 3.74
636 662 6.513180 CATGGCAAATCTGATTATCAGCTTT 58.487 36.000 16.72 16.12 41.74 3.51
638 679 6.334989 TGGCAAATCTGATTATCAGCTTTTG 58.665 36.000 27.16 27.16 39.06 2.44
640 681 7.122501 TGGCAAATCTGATTATCAGCTTTTGTA 59.877 33.333 29.10 22.34 39.06 2.41
811 1168 1.259142 TATTTGACGCTCGGGGGTGA 61.259 55.000 10.87 0.00 38.76 4.02
814 1171 3.458163 GACGCTCGGGGGTGATCA 61.458 66.667 10.87 0.00 38.76 2.92
835 1222 0.108329 CATTAACCGCCTGAGACCGT 60.108 55.000 0.00 0.00 0.00 4.83
921 1312 7.415004 ACACAATATAATCCCCTCCCAAATA 57.585 36.000 0.00 0.00 0.00 1.40
1132 1530 2.206536 GCCTCATCCTCCTCCTCCG 61.207 68.421 0.00 0.00 0.00 4.63
1480 1907 0.394762 GCAAGATCCAGGCCATCACA 60.395 55.000 5.01 0.00 0.00 3.58
1669 2096 3.103742 AGGTCTCTTGACTTGATCCTCC 58.896 50.000 0.00 0.00 42.54 4.30
1670 2097 2.834549 GGTCTCTTGACTTGATCCTCCA 59.165 50.000 0.00 0.00 42.54 3.86
1878 2313 1.612676 TCCCGTCGTCTCAGAAAGAA 58.387 50.000 0.00 0.00 35.21 2.52
2068 2556 9.530633 CTCTTGTCTTACTGTTAGTTTAGTGTT 57.469 33.333 0.00 0.00 0.00 3.32
2128 2618 8.822805 GGATAATAAGGTCCATACTCATTACCA 58.177 37.037 0.00 0.00 34.57 3.25
2143 2633 0.183014 TACCAAGTGTTTTCCGGGCA 59.817 50.000 0.00 0.00 0.00 5.36
2153 2643 2.351706 TTTCCGGGCAACTTACTGTT 57.648 45.000 0.00 0.00 39.92 3.16
2154 2644 3.488778 TTTCCGGGCAACTTACTGTTA 57.511 42.857 0.00 0.00 37.07 2.41
2155 2645 2.754946 TCCGGGCAACTTACTGTTAG 57.245 50.000 0.00 0.00 37.07 2.34
2158 2648 3.143728 CCGGGCAACTTACTGTTAGTTT 58.856 45.455 9.29 0.00 37.07 2.66
2159 2649 4.040217 TCCGGGCAACTTACTGTTAGTTTA 59.960 41.667 9.29 0.00 37.07 2.01
2160 2650 4.390909 CCGGGCAACTTACTGTTAGTTTAG 59.609 45.833 9.29 1.83 37.07 1.85
2161 2651 4.992951 CGGGCAACTTACTGTTAGTTTAGT 59.007 41.667 9.29 0.00 37.07 2.24
2162 2652 5.107220 CGGGCAACTTACTGTTAGTTTAGTG 60.107 44.000 9.29 1.44 37.07 2.74
2163 2653 5.761726 GGGCAACTTACTGTTAGTTTAGTGT 59.238 40.000 9.29 0.00 37.07 3.55
2197 2687 5.342866 GCTAATAGGGAAGGGAGAAGGATA 58.657 45.833 0.00 0.00 0.00 2.59
2198 2688 5.785940 GCTAATAGGGAAGGGAGAAGGATAA 59.214 44.000 0.00 0.00 0.00 1.75
2200 2690 7.624077 GCTAATAGGGAAGGGAGAAGGATAATA 59.376 40.741 0.00 0.00 0.00 0.98
2295 2785 6.591834 CGAGTCTTCATGTCCTTGTAAGAAAT 59.408 38.462 0.00 0.00 0.00 2.17
2296 2786 7.759886 CGAGTCTTCATGTCCTTGTAAGAAATA 59.240 37.037 0.00 0.00 0.00 1.40
2297 2787 8.779354 AGTCTTCATGTCCTTGTAAGAAATAC 57.221 34.615 0.00 0.00 34.92 1.89
2298 2788 8.375506 AGTCTTCATGTCCTTGTAAGAAATACA 58.624 33.333 0.00 0.00 42.75 2.29
2299 2789 8.660373 GTCTTCATGTCCTTGTAAGAAATACAG 58.340 37.037 0.00 0.00 45.00 2.74
2333 2823 5.299028 TGTTTCTTAGCAGCAAACAATGAGA 59.701 36.000 6.35 0.00 37.14 3.27
2413 2910 5.050091 CGATAACTATCCGCAAGAAGCAAAT 60.050 40.000 0.00 0.00 46.13 2.32
2528 3028 5.186021 ACCTTAGTCAAGTATGAGTCAGTGG 59.814 44.000 0.00 0.00 39.87 4.00
2648 3149 2.095718 GTGATGACCGAAAACTCTTGGC 60.096 50.000 0.00 0.00 0.00 4.52
2674 3175 5.997746 TCTGTTTGGTCTGAGTGGATAAAAG 59.002 40.000 0.00 0.00 0.00 2.27
2744 3251 8.738645 AGTTCCCAACAGTAGAAATATTCATC 57.261 34.615 0.00 0.00 0.00 2.92
2756 3267 9.832445 GTAGAAATATTCATCTAACTGGAACCA 57.168 33.333 0.00 0.00 30.39 3.67
2932 3485 1.375523 GGTGGCTGTCAGGTAACCG 60.376 63.158 1.14 0.00 37.17 4.44
3095 3682 4.627611 ATGCTTTGTATGTGCTCATGTC 57.372 40.909 11.46 5.40 35.70 3.06
3111 3698 4.713553 TCATGTCCTGCTTGTTGAACTTA 58.286 39.130 0.00 0.00 0.00 2.24
3187 3839 4.244862 GCAGTGGGTTGTATTCAATTTGG 58.755 43.478 0.00 0.00 35.92 3.28
3369 4135 4.974645 AATCTTATACCCAATCCGCTGA 57.025 40.909 0.00 0.00 0.00 4.26
3453 4219 0.322456 TAGCCTTGTCCATGTGGTGC 60.322 55.000 0.00 0.00 36.34 5.01
3482 4248 5.588246 TCTTTTGTGATGCTTGTAACTGTCA 59.412 36.000 0.00 0.00 0.00 3.58
3526 4295 5.645497 CCATTCAACTAGCCTTGGCTATATC 59.355 44.000 20.15 0.00 0.00 1.63
4058 4909 7.681939 TGACACACCAGTATAAATTTTCCTC 57.318 36.000 0.00 0.00 0.00 3.71
4235 5089 8.248253 CAGTCTATGTACATACACCACTGTAAA 58.752 37.037 15.27 0.00 39.30 2.01
4255 5191 1.132262 AGCATATTTTGTCAACGCCGG 59.868 47.619 0.00 0.00 0.00 6.13
4290 5272 9.955208 TTAATGCTGTTATCATTGATAAGCAAG 57.045 29.630 25.63 19.65 38.35 4.01
4306 5288 3.074412 AGCAAGCACGCTACATTTAGTT 58.926 40.909 0.00 0.00 41.55 2.24
4308 5290 4.330074 AGCAAGCACGCTACATTTAGTTAG 59.670 41.667 0.00 0.00 41.55 2.34
4313 5295 4.267928 GCACGCTACATTTAGTTAGTCCTG 59.732 45.833 0.00 0.00 0.00 3.86
4443 5431 4.402155 ACTGATGTGACCATTGTTTGTTGT 59.598 37.500 0.00 0.00 0.00 3.32
4448 5436 7.984050 TGATGTGACCATTGTTTGTTGTTTATT 59.016 29.630 0.00 0.00 0.00 1.40
4465 5457 2.330231 ATTGGCGTCATGTTTGTTCG 57.670 45.000 0.00 0.00 0.00 3.95
4471 5463 2.148569 GCGTCATGTTTGTTCGTTTTCG 59.851 45.455 0.00 0.00 45.64 3.46
4634 5671 5.705609 TCTTGTGGCCTAACTGAATTTTC 57.294 39.130 3.32 0.00 0.00 2.29
4685 5730 4.437930 GCTATGTGGTCAAACTGATGAAGC 60.438 45.833 0.00 0.00 0.00 3.86
4791 5836 4.120589 CTCTTAAGGATGCGGGTTTACTC 58.879 47.826 1.85 0.00 0.00 2.59
4848 5895 5.663773 GCAAATGCGCGCTTATTTGATTATC 60.664 40.000 39.14 25.91 43.51 1.75
4874 5921 0.961753 CCAGCACTTGGGTTCTTTCC 59.038 55.000 0.00 0.00 43.75 3.13
4879 5926 2.803133 GCACTTGGGTTCTTTCCTTTGC 60.803 50.000 0.00 0.00 0.00 3.68
4910 5962 3.266510 TGTGTCTGGAGTGGATTATGC 57.733 47.619 0.00 0.00 0.00 3.14
4937 5989 4.928020 GCTGATGCGATGAATTCTATGAGA 59.072 41.667 7.05 0.00 0.00 3.27
4942 5994 5.527033 TGCGATGAATTCTATGAGAGAGTG 58.473 41.667 7.05 0.00 34.93 3.51
4943 5995 5.068329 TGCGATGAATTCTATGAGAGAGTGT 59.932 40.000 7.05 0.00 34.93 3.55
5008 6080 1.816224 ACACACGCCCATGTAATTTCC 59.184 47.619 0.00 0.00 0.00 3.13
5039 6111 9.762933 AAAATTCATTTGTATGTTACTTGTGCT 57.237 25.926 0.00 0.00 33.34 4.40
5041 6113 9.840427 AATTCATTTGTATGTTACTTGTGCTAC 57.160 29.630 0.00 0.00 33.34 3.58
5043 6115 6.869388 TCATTTGTATGTTACTTGTGCTACGA 59.131 34.615 0.00 0.00 33.34 3.43
5046 6118 6.203808 TGTATGTTACTTGTGCTACGAGAT 57.796 37.500 9.64 0.00 33.76 2.75
5047 6119 6.033966 TGTATGTTACTTGTGCTACGAGATG 58.966 40.000 9.64 0.00 33.76 2.90
5048 6120 3.250744 TGTTACTTGTGCTACGAGATGC 58.749 45.455 9.64 0.00 33.76 3.91
5078 6154 5.731406 GCATGTGTACAGATTGATCGCAATT 60.731 40.000 2.09 0.00 44.47 2.32
5096 6172 4.622740 GCAATTGGCAGTTACAAGATTCAC 59.377 41.667 7.72 0.00 43.97 3.18
5097 6173 5.565439 GCAATTGGCAGTTACAAGATTCACT 60.565 40.000 7.72 0.00 43.97 3.41
5125 6201 6.741992 TGTGTGAGAATGTACATGATTTCC 57.258 37.500 9.63 0.00 0.00 3.13
5127 6203 6.595326 TGTGTGAGAATGTACATGATTTCCTC 59.405 38.462 9.63 9.63 0.00 3.71
5140 6216 5.560722 TGATTTCCTCCTTGTGTAACTCA 57.439 39.130 0.00 0.00 38.04 3.41
5141 6217 5.935945 TGATTTCCTCCTTGTGTAACTCAA 58.064 37.500 0.00 0.00 38.04 3.02
5142 6218 6.361433 TGATTTCCTCCTTGTGTAACTCAAA 58.639 36.000 0.00 0.00 38.04 2.69
5143 6219 6.831353 TGATTTCCTCCTTGTGTAACTCAAAA 59.169 34.615 0.00 0.00 38.04 2.44
5174 6269 2.181777 TCGTGCTCGATGACCTGC 59.818 61.111 6.80 0.00 41.35 4.85
5318 6413 1.264749 CCTCGAACCCCATCCTCACA 61.265 60.000 0.00 0.00 0.00 3.58
5330 6425 1.672356 CCTCACAAGCCTGAACCCG 60.672 63.158 0.00 0.00 0.00 5.28
5361 6456 3.953612 AGACTGTCCAAGCAAATCACAAA 59.046 39.130 3.76 0.00 0.00 2.83
5362 6457 4.037208 AGACTGTCCAAGCAAATCACAAAG 59.963 41.667 3.76 0.00 0.00 2.77
5373 6470 6.270815 AGCAAATCACAAAGCATATCATCAC 58.729 36.000 0.00 0.00 0.00 3.06
5385 6482 1.306148 ATCATCACTGAGCAATGCGG 58.694 50.000 0.00 0.00 34.12 5.69
5386 6483 1.063649 CATCACTGAGCAATGCGGC 59.936 57.895 0.00 0.00 0.00 6.53
5390 6487 2.037136 ACTGAGCAATGCGGCTGAC 61.037 57.895 12.83 0.00 45.99 3.51
5398 6495 0.659427 AATGCGGCTGACGAATGATG 59.341 50.000 7.31 0.00 40.93 3.07
5414 6511 5.959618 AATGATGATCATTCATGCACGAT 57.040 34.783 14.57 0.00 43.03 3.73
5415 6512 4.742438 TGATGATCATTCATGCACGATG 57.258 40.909 10.14 0.00 42.73 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.100503 GCTAGAGGACCCAGCAGCC 62.101 68.421 0.00 0.00 35.35 4.85
1 2 2.503546 GCTAGAGGACCCAGCAGC 59.496 66.667 0.00 0.00 35.35 5.25
2 3 2.439104 GGGCTAGAGGACCCAGCAG 61.439 68.421 11.32 0.00 46.22 4.24
7 8 3.851128 GTGCGGGCTAGAGGACCC 61.851 72.222 0.00 0.00 41.04 4.46
8 9 4.208686 CGTGCGGGCTAGAGGACC 62.209 72.222 0.00 0.00 40.58 4.46
9 10 3.412879 GACGTGCGGGCTAGAGGAC 62.413 68.421 0.00 0.00 0.00 3.85
10 11 3.138798 GACGTGCGGGCTAGAGGA 61.139 66.667 0.00 0.00 0.00 3.71
11 12 4.208686 GGACGTGCGGGCTAGAGG 62.209 72.222 0.00 0.00 0.00 3.69
12 13 3.417275 CTGGACGTGCGGGCTAGAG 62.417 68.421 8.21 0.00 0.00 2.43
13 14 3.449227 CTGGACGTGCGGGCTAGA 61.449 66.667 8.21 0.00 0.00 2.43
14 15 3.449227 TCTGGACGTGCGGGCTAG 61.449 66.667 16.45 0.12 0.00 3.42
15 16 3.755628 GTCTGGACGTGCGGGCTA 61.756 66.667 13.81 0.00 0.00 3.93
25 26 2.110213 TGGCAACACCGTCTGGAC 59.890 61.111 0.00 0.00 46.17 4.02
36 37 3.645975 CGTCCGGTGTGTGGCAAC 61.646 66.667 0.00 0.00 0.00 4.17
37 38 4.164087 ACGTCCGGTGTGTGGCAA 62.164 61.111 0.00 0.00 0.00 4.52
38 39 4.901123 CACGTCCGGTGTGTGGCA 62.901 66.667 17.74 0.00 41.89 4.92
84 85 3.656045 CAACCAACCCGCACGACC 61.656 66.667 0.00 0.00 0.00 4.79
85 86 4.322385 GCAACCAACCCGCACGAC 62.322 66.667 0.00 0.00 0.00 4.34
86 87 4.555709 AGCAACCAACCCGCACGA 62.556 61.111 0.00 0.00 0.00 4.35
87 88 4.326766 CAGCAACCAACCCGCACG 62.327 66.667 0.00 0.00 0.00 5.34
88 89 3.194272 GACAGCAACCAACCCGCAC 62.194 63.158 0.00 0.00 0.00 5.34
89 90 2.904866 GACAGCAACCAACCCGCA 60.905 61.111 0.00 0.00 0.00 5.69
90 91 3.670377 GGACAGCAACCAACCCGC 61.670 66.667 0.00 0.00 0.00 6.13
91 92 1.603455 ATGGACAGCAACCAACCCG 60.603 57.895 0.00 0.00 40.93 5.28
92 93 1.966762 CATGGACAGCAACCAACCC 59.033 57.895 0.00 0.00 40.93 4.11
93 94 1.290009 GCATGGACAGCAACCAACC 59.710 57.895 0.00 0.00 40.93 3.77
94 95 1.290009 GGCATGGACAGCAACCAAC 59.710 57.895 0.00 0.00 40.93 3.77
95 96 1.152589 TGGCATGGACAGCAACCAA 60.153 52.632 0.00 0.00 40.93 3.67
96 97 1.902918 GTGGCATGGACAGCAACCA 60.903 57.895 0.00 0.00 41.83 3.67
97 98 1.902918 TGTGGCATGGACAGCAACC 60.903 57.895 0.00 0.00 35.00 3.77
98 99 1.286880 GTGTGGCATGGACAGCAAC 59.713 57.895 0.00 0.00 36.45 4.17
99 100 2.260154 CGTGTGGCATGGACAGCAA 61.260 57.895 0.00 0.00 0.00 3.91
100 101 2.669229 CGTGTGGCATGGACAGCA 60.669 61.111 0.00 0.00 0.00 4.41
101 102 2.358615 TCGTGTGGCATGGACAGC 60.359 61.111 0.00 0.00 0.00 4.40
102 103 1.742880 CCTCGTGTGGCATGGACAG 60.743 63.158 0.00 0.00 0.00 3.51
103 104 2.347114 CCTCGTGTGGCATGGACA 59.653 61.111 0.00 0.00 0.00 4.02
129 130 2.070039 TAGGGTGGGCAGGAATCCG 61.070 63.158 0.00 0.00 0.00 4.18
130 131 1.279025 TGTAGGGTGGGCAGGAATCC 61.279 60.000 0.00 0.00 0.00 3.01
131 132 0.107165 GTGTAGGGTGGGCAGGAATC 60.107 60.000 0.00 0.00 0.00 2.52
132 133 1.910580 CGTGTAGGGTGGGCAGGAAT 61.911 60.000 0.00 0.00 0.00 3.01
133 134 2.589157 CGTGTAGGGTGGGCAGGAA 61.589 63.158 0.00 0.00 0.00 3.36
134 135 3.000819 CGTGTAGGGTGGGCAGGA 61.001 66.667 0.00 0.00 0.00 3.86
135 136 3.319198 ACGTGTAGGGTGGGCAGG 61.319 66.667 0.00 0.00 0.00 4.85
136 137 2.047274 CACGTGTAGGGTGGGCAG 60.047 66.667 7.58 0.00 0.00 4.85
137 138 2.845317 ACACGTGTAGGGTGGGCA 60.845 61.111 21.98 0.00 39.69 5.36
142 143 1.692173 AACTGCCACACGTGTAGGGT 61.692 55.000 27.31 19.03 36.52 4.34
143 144 0.319083 TAACTGCCACACGTGTAGGG 59.681 55.000 27.31 23.42 0.00 3.53
144 145 2.268298 GATAACTGCCACACGTGTAGG 58.732 52.381 22.90 23.75 0.00 3.18
145 146 1.917955 CGATAACTGCCACACGTGTAG 59.082 52.381 22.90 17.80 0.00 2.74
146 147 1.403116 CCGATAACTGCCACACGTGTA 60.403 52.381 22.90 5.00 0.00 2.90
147 148 0.669318 CCGATAACTGCCACACGTGT 60.669 55.000 17.22 17.22 0.00 4.49
148 149 1.358725 CCCGATAACTGCCACACGTG 61.359 60.000 15.48 15.48 0.00 4.49
149 150 1.079405 CCCGATAACTGCCACACGT 60.079 57.895 0.00 0.00 0.00 4.49
150 151 1.082117 GTCCCGATAACTGCCACACG 61.082 60.000 0.00 0.00 0.00 4.49
151 152 0.743345 GGTCCCGATAACTGCCACAC 60.743 60.000 0.00 0.00 0.00 3.82
152 153 1.600107 GGTCCCGATAACTGCCACA 59.400 57.895 0.00 0.00 0.00 4.17
153 154 1.153229 GGGTCCCGATAACTGCCAC 60.153 63.158 0.00 0.00 0.00 5.01
154 155 0.031917 TAGGGTCCCGATAACTGCCA 60.032 55.000 0.99 0.00 0.00 4.92
155 156 0.680061 CTAGGGTCCCGATAACTGCC 59.320 60.000 0.99 0.00 0.00 4.85
156 157 1.700955 TCTAGGGTCCCGATAACTGC 58.299 55.000 0.99 0.00 0.00 4.40
157 158 4.957684 AAATCTAGGGTCCCGATAACTG 57.042 45.455 0.99 0.00 0.00 3.16
158 159 5.970501 AAAAATCTAGGGTCCCGATAACT 57.029 39.130 0.99 0.00 0.00 2.24
159 160 6.228995 CCTAAAAATCTAGGGTCCCGATAAC 58.771 44.000 0.99 0.00 35.67 1.89
160 161 5.221783 GCCTAAAAATCTAGGGTCCCGATAA 60.222 44.000 0.99 0.00 39.20 1.75
161 162 4.285260 GCCTAAAAATCTAGGGTCCCGATA 59.715 45.833 0.99 0.00 39.20 2.92
162 163 3.072622 GCCTAAAAATCTAGGGTCCCGAT 59.927 47.826 0.99 0.00 39.20 4.18
163 164 2.436911 GCCTAAAAATCTAGGGTCCCGA 59.563 50.000 0.99 0.00 39.20 5.14
164 165 2.438392 AGCCTAAAAATCTAGGGTCCCG 59.562 50.000 0.99 0.00 44.73 5.14
165 166 4.202440 GGTAGCCTAAAAATCTAGGGTCCC 60.202 50.000 0.00 0.00 44.73 4.46
166 167 4.202440 GGGTAGCCTAAAAATCTAGGGTCC 60.202 50.000 2.95 6.69 44.73 4.46
167 168 4.202440 GGGGTAGCCTAAAAATCTAGGGTC 60.202 50.000 11.48 0.00 44.73 4.46
169 170 3.981375 AGGGGTAGCCTAAAAATCTAGGG 59.019 47.826 11.48 0.00 39.20 3.53
170 171 5.279356 CGTAGGGGTAGCCTAAAAATCTAGG 60.279 48.000 11.48 4.00 41.40 3.02
171 172 5.537674 TCGTAGGGGTAGCCTAAAAATCTAG 59.462 44.000 11.48 0.00 0.00 2.43
172 173 5.457686 TCGTAGGGGTAGCCTAAAAATCTA 58.542 41.667 11.48 0.00 0.00 1.98
173 174 4.292643 TCGTAGGGGTAGCCTAAAAATCT 58.707 43.478 11.48 0.00 0.00 2.40
174 175 4.677673 TCGTAGGGGTAGCCTAAAAATC 57.322 45.455 11.48 0.00 0.00 2.17
175 176 5.641789 ATTCGTAGGGGTAGCCTAAAAAT 57.358 39.130 11.48 2.57 0.00 1.82
176 177 5.187687 CAATTCGTAGGGGTAGCCTAAAAA 58.812 41.667 11.48 0.22 0.00 1.94
177 178 4.773013 CAATTCGTAGGGGTAGCCTAAAA 58.227 43.478 11.48 0.00 0.00 1.52
178 179 3.432608 GCAATTCGTAGGGGTAGCCTAAA 60.433 47.826 11.48 0.00 0.00 1.85
179 180 2.103601 GCAATTCGTAGGGGTAGCCTAA 59.896 50.000 11.48 0.00 0.00 2.69
185 186 2.234414 AGTTTCGCAATTCGTAGGGGTA 59.766 45.455 0.00 0.00 39.67 3.69
188 189 2.073816 ACAGTTTCGCAATTCGTAGGG 58.926 47.619 0.00 0.00 39.67 3.53
195 196 4.499019 CCAAGGTACAACAGTTTCGCAATT 60.499 41.667 0.00 0.00 0.00 2.32
206 207 5.042463 TCTCAATCAACCAAGGTACAACA 57.958 39.130 0.00 0.00 0.00 3.33
207 208 6.575162 ATTCTCAATCAACCAAGGTACAAC 57.425 37.500 0.00 0.00 0.00 3.32
220 221 9.187996 TGCATAGAAATAACCAATTCTCAATCA 57.812 29.630 0.00 0.00 37.16 2.57
223 224 9.241919 TCTTGCATAGAAATAACCAATTCTCAA 57.758 29.630 0.00 0.00 37.16 3.02
225 226 7.852945 CGTCTTGCATAGAAATAACCAATTCTC 59.147 37.037 0.00 0.00 37.16 2.87
229 231 7.552687 TCTTCGTCTTGCATAGAAATAACCAAT 59.447 33.333 0.00 0.00 33.81 3.16
245 247 5.348997 GGTCTTTTAGATGGTCTTCGTCTTG 59.651 44.000 0.00 0.00 41.62 3.02
246 248 5.011738 TGGTCTTTTAGATGGTCTTCGTCTT 59.988 40.000 0.00 0.00 41.62 3.01
248 250 4.817517 TGGTCTTTTAGATGGTCTTCGTC 58.182 43.478 0.00 0.00 0.00 4.20
250 252 4.392138 GGTTGGTCTTTTAGATGGTCTTCG 59.608 45.833 0.00 0.00 0.00 3.79
251 253 5.313712 TGGTTGGTCTTTTAGATGGTCTTC 58.686 41.667 0.00 0.00 0.00 2.87
252 254 5.319043 TGGTTGGTCTTTTAGATGGTCTT 57.681 39.130 0.00 0.00 0.00 3.01
253 255 4.993705 TGGTTGGTCTTTTAGATGGTCT 57.006 40.909 0.00 0.00 0.00 3.85
254 256 7.556275 TCATATTGGTTGGTCTTTTAGATGGTC 59.444 37.037 0.00 0.00 0.00 4.02
255 257 7.410174 TCATATTGGTTGGTCTTTTAGATGGT 58.590 34.615 0.00 0.00 0.00 3.55
256 258 7.880160 TCATATTGGTTGGTCTTTTAGATGG 57.120 36.000 0.00 0.00 0.00 3.51
286 288 7.881643 TGGGTTTTTGATAAAATCATGAACG 57.118 32.000 0.00 0.00 39.39 3.95
294 296 8.704668 ACTCTTGAGTTGGGTTTTTGATAAAAT 58.295 29.630 0.00 0.00 35.80 1.82
296 298 7.654022 ACTCTTGAGTTGGGTTTTTGATAAA 57.346 32.000 0.00 0.00 0.00 1.40
297 299 7.488322 CAACTCTTGAGTTGGGTTTTTGATAA 58.512 34.615 26.86 0.00 43.78 1.75
298 300 7.038154 CAACTCTTGAGTTGGGTTTTTGATA 57.962 36.000 26.86 0.00 43.78 2.15
315 317 2.750350 CCTCGGCCCACAACTCTT 59.250 61.111 0.00 0.00 0.00 2.85
323 325 2.045045 CAAGAATGCCTCGGCCCA 60.045 61.111 5.33 0.00 41.09 5.36
328 330 2.802667 CGCCGACAAGAATGCCTCG 61.803 63.158 0.00 0.00 0.00 4.63
329 331 1.019278 TTCGCCGACAAGAATGCCTC 61.019 55.000 0.00 0.00 0.00 4.70
335 337 0.958382 CCCCATTTCGCCGACAAGAA 60.958 55.000 0.00 0.00 0.00 2.52
339 341 0.542333 TAATCCCCATTTCGCCGACA 59.458 50.000 0.00 0.00 0.00 4.35
343 345 3.132111 ACAATGTTAATCCCCATTTCGCC 59.868 43.478 0.00 0.00 0.00 5.54
345 347 5.576384 CACAACAATGTTAATCCCCATTTCG 59.424 40.000 0.00 0.00 37.82 3.46
350 352 4.474394 TGACACAACAATGTTAATCCCCA 58.526 39.130 0.00 0.00 37.82 4.96
369 371 1.136000 GCATTTTGCCGGCAATTTGAC 60.136 47.619 40.32 27.46 37.42 3.18
395 397 1.448985 ATAGAACCGTTTGCGCATGT 58.551 45.000 12.75 3.44 36.67 3.21
404 406 6.850752 ATTGAAATCCCAAATAGAACCGTT 57.149 33.333 0.00 0.00 0.00 4.44
405 407 9.635404 TTATATTGAAATCCCAAATAGAACCGT 57.365 29.630 0.00 0.00 0.00 4.83
454 456 8.539770 ACATATCTGAGGCGTCATATTTTTAG 57.460 34.615 9.94 0.00 30.18 1.85
460 462 3.129462 CCGACATATCTGAGGCGTCATAT 59.871 47.826 9.94 10.79 30.18 1.78
462 464 1.270826 CCGACATATCTGAGGCGTCAT 59.729 52.381 9.94 0.00 30.18 3.06
463 465 0.668535 CCGACATATCTGAGGCGTCA 59.331 55.000 9.07 9.07 0.00 4.35
465 467 1.542030 GATCCGACATATCTGAGGCGT 59.458 52.381 0.00 0.00 0.00 5.68
466 468 1.135257 GGATCCGACATATCTGAGGCG 60.135 57.143 0.00 0.00 0.00 5.52
467 469 1.205893 GGGATCCGACATATCTGAGGC 59.794 57.143 5.45 0.00 0.00 4.70
482 484 1.804372 GCTATGGATGCGATCGGGATC 60.804 57.143 18.30 12.96 42.32 3.36
483 485 0.176680 GCTATGGATGCGATCGGGAT 59.823 55.000 18.30 4.21 0.00 3.85
484 486 1.184970 TGCTATGGATGCGATCGGGA 61.185 55.000 18.30 0.00 0.00 5.14
491 510 5.388111 CAACTATTGATTGCTATGGATGCG 58.612 41.667 0.00 0.00 0.00 4.73
506 525 2.728690 TTGCCAAGCTGCAACTATTG 57.271 45.000 7.34 0.00 45.77 1.90
516 535 4.405116 TCAACAGAAAAATTGCCAAGCT 57.595 36.364 0.00 0.00 0.00 3.74
519 538 7.862512 AAAGAATCAACAGAAAAATTGCCAA 57.137 28.000 0.00 0.00 0.00 4.52
522 541 7.003648 GCGTAAAGAATCAACAGAAAAATTGC 58.996 34.615 0.00 0.00 0.00 3.56
540 559 4.684242 TCTGTGTTGTCATGTAGCGTAAAG 59.316 41.667 0.00 0.00 0.00 1.85
547 566 5.466393 TGTCATGTTCTGTGTTGTCATGTAG 59.534 40.000 0.00 0.00 37.64 2.74
549 568 4.198530 TGTCATGTTCTGTGTTGTCATGT 58.801 39.130 0.00 0.00 37.64 3.21
552 571 5.635417 TTTTGTCATGTTCTGTGTTGTCA 57.365 34.783 0.00 0.00 0.00 3.58
554 573 5.360714 AGGATTTTGTCATGTTCTGTGTTGT 59.639 36.000 0.00 0.00 0.00 3.32
558 577 6.857964 GTGTAAGGATTTTGTCATGTTCTGTG 59.142 38.462 0.00 0.00 0.00 3.66
559 578 6.545666 TGTGTAAGGATTTTGTCATGTTCTGT 59.454 34.615 0.00 0.00 0.00 3.41
560 579 6.857964 GTGTGTAAGGATTTTGTCATGTTCTG 59.142 38.462 0.00 0.00 0.00 3.02
569 595 5.509501 CCATGCTTGTGTGTAAGGATTTTGT 60.510 40.000 0.00 0.00 36.72 2.83
574 600 3.439857 ACCATGCTTGTGTGTAAGGAT 57.560 42.857 0.00 0.00 38.98 3.24
576 602 5.643379 AATTACCATGCTTGTGTGTAAGG 57.357 39.130 0.00 0.00 0.00 2.69
577 603 9.289303 GATAAAATTACCATGCTTGTGTGTAAG 57.711 33.333 0.00 0.00 0.00 2.34
579 605 8.458052 CAGATAAAATTACCATGCTTGTGTGTA 58.542 33.333 0.00 0.00 0.00 2.90
580 606 7.039784 ACAGATAAAATTACCATGCTTGTGTGT 60.040 33.333 0.00 0.00 0.00 3.72
581 607 7.315142 ACAGATAAAATTACCATGCTTGTGTG 58.685 34.615 0.00 0.00 0.00 3.82
593 619 6.529829 TGCCATGCGAAAACAGATAAAATTAC 59.470 34.615 0.00 0.00 0.00 1.89
594 620 6.625362 TGCCATGCGAAAACAGATAAAATTA 58.375 32.000 0.00 0.00 0.00 1.40
745 786 2.025321 CCCACAGCCCAATAACCTTAGT 60.025 50.000 0.00 0.00 0.00 2.24
811 1168 1.486310 TCTCAGGCGGTTAATGCTGAT 59.514 47.619 0.00 0.00 0.00 2.90
814 1171 0.107654 GGTCTCAGGCGGTTAATGCT 60.108 55.000 3.14 0.00 0.00 3.79
835 1222 2.070028 TGCTTAAGATTTACGCGCACA 58.930 42.857 5.73 0.00 0.00 4.57
897 1284 5.742562 TTTGGGAGGGGATTATATTGTGT 57.257 39.130 0.00 0.00 0.00 3.72
1155 1553 3.306595 CTGCTTCGCCTGAGCCTCA 62.307 63.158 0.00 0.00 34.57 3.86
1161 1559 1.435105 CTCGATCTGCTTCGCCTGA 59.565 57.895 0.00 0.00 38.97 3.86
1299 1714 2.362369 ATCGAGGCCACTGGACAGG 61.362 63.158 5.01 0.00 34.13 4.00
1649 2076 2.834549 TGGAGGATCAAGTCAAGAGACC 59.165 50.000 0.00 0.00 40.97 3.85
1669 2096 0.817654 TCAGAGCGTGGGAGTGTATG 59.182 55.000 0.00 0.00 0.00 2.39
1670 2097 1.781786 ATCAGAGCGTGGGAGTGTAT 58.218 50.000 0.00 0.00 0.00 2.29
1878 2313 4.081309 GCCATTTTGCTGATGGGCATATAT 60.081 41.667 13.11 0.00 43.45 0.86
2069 2557 9.102757 CTTCACTGTTAGCATGTGTCTTAATAT 57.897 33.333 0.00 0.00 33.82 1.28
2070 2558 7.064609 GCTTCACTGTTAGCATGTGTCTTAATA 59.935 37.037 6.76 0.00 37.35 0.98
2071 2559 6.128172 GCTTCACTGTTAGCATGTGTCTTAAT 60.128 38.462 6.76 0.00 37.35 1.40
2072 2560 5.179368 GCTTCACTGTTAGCATGTGTCTTAA 59.821 40.000 6.76 0.00 37.35 1.85
2073 2561 4.690748 GCTTCACTGTTAGCATGTGTCTTA 59.309 41.667 6.76 0.00 37.35 2.10
2128 2618 1.480789 AAGTTGCCCGGAAAACACTT 58.519 45.000 17.97 9.44 0.00 3.16
2161 2651 4.463539 TCCCTATTAGCGTGTGTCTTAACA 59.536 41.667 0.00 0.00 0.00 2.41
2162 2652 5.002464 TCCCTATTAGCGTGTGTCTTAAC 57.998 43.478 0.00 0.00 0.00 2.01
2163 2653 5.394883 CCTTCCCTATTAGCGTGTGTCTTAA 60.395 44.000 0.00 0.00 0.00 1.85
2173 2663 2.300437 CCTTCTCCCTTCCCTATTAGCG 59.700 54.545 0.00 0.00 0.00 4.26
2182 2672 5.013287 GGACCTTATTATCCTTCTCCCTTCC 59.987 48.000 0.00 0.00 31.75 3.46
2197 2687 7.569111 ACTCCTGTAATGAGTATGGACCTTATT 59.431 37.037 0.00 0.00 40.15 1.40
2198 2688 7.076446 ACTCCTGTAATGAGTATGGACCTTAT 58.924 38.462 0.00 0.00 40.15 1.73
2200 2690 5.281314 ACTCCTGTAATGAGTATGGACCTT 58.719 41.667 0.00 0.00 40.15 3.50
2295 2785 7.892609 TGCTAAGAAACATCTGTTCTACTGTA 58.107 34.615 0.00 0.00 37.25 2.74
2296 2786 6.759272 TGCTAAGAAACATCTGTTCTACTGT 58.241 36.000 0.00 0.00 37.25 3.55
2297 2787 6.183360 GCTGCTAAGAAACATCTGTTCTACTG 60.183 42.308 0.00 0.00 37.25 2.74
2298 2788 5.872070 GCTGCTAAGAAACATCTGTTCTACT 59.128 40.000 0.00 0.00 37.25 2.57
2299 2789 5.639506 TGCTGCTAAGAAACATCTGTTCTAC 59.360 40.000 0.00 0.00 37.25 2.59
2333 2823 4.790718 AGGGACTTAACCTCAAAACACT 57.209 40.909 0.00 0.00 27.25 3.55
2413 2910 2.028112 CCTAGCAAGTAAGTGCCACTGA 60.028 50.000 0.00 0.00 46.14 3.41
2513 3012 5.268387 ACTCTGATCCACTGACTCATACTT 58.732 41.667 0.00 0.00 0.00 2.24
2528 3028 4.084118 GCCGCATTCTTTCATACTCTGATC 60.084 45.833 0.00 0.00 32.72 2.92
2648 3149 3.407424 TCCACTCAGACCAAACAGATG 57.593 47.619 0.00 0.00 0.00 2.90
2744 3251 5.230182 GCCTCAAATTTTGGTTCCAGTTAG 58.770 41.667 9.18 0.00 0.00 2.34
3095 3682 9.079833 CAATTGATAATAAGTTCAACAAGCAGG 57.920 33.333 0.00 0.00 34.87 4.85
3357 4123 2.287788 GCAATAACATCAGCGGATTGGG 60.288 50.000 0.00 0.00 0.00 4.12
3364 4130 2.838736 ACTAGGGCAATAACATCAGCG 58.161 47.619 0.00 0.00 0.00 5.18
3453 4219 9.069078 CAGTTACAAGCATCACAAAAGATTATG 57.931 33.333 0.00 0.00 0.00 1.90
3482 4248 2.094675 GCACAGCCATGGAATTACACT 58.905 47.619 18.40 0.00 0.00 3.55
3526 4295 9.177608 TCACATCTAACCAAGAATTTAGGAATG 57.822 33.333 0.00 0.00 37.89 2.67
4020 4857 1.535028 TGTGTCAAAATAGCACAGCGG 59.465 47.619 0.00 0.00 38.09 5.52
4235 5089 1.132262 CCGGCGTTGACAAAATATGCT 59.868 47.619 6.01 0.00 0.00 3.79
4255 5191 8.810427 CAATGATAACAGCATTAATGTTTGTCC 58.190 33.333 20.57 15.24 41.08 4.02
4290 5272 4.267928 CAGGACTAACTAAATGTAGCGTGC 59.732 45.833 0.00 0.00 0.00 5.34
4306 5288 2.027192 GGACAAACAGGCATCAGGACTA 60.027 50.000 0.00 0.00 29.10 2.59
4308 5290 1.168714 GGACAAACAGGCATCAGGAC 58.831 55.000 0.00 0.00 0.00 3.85
4313 5295 1.065126 AGGCTAGGACAAACAGGCATC 60.065 52.381 0.00 0.00 37.32 3.91
4443 5431 4.222886 CGAACAAACATGACGCCAATAAA 58.777 39.130 0.00 0.00 0.00 1.40
4448 5436 1.018148 AACGAACAAACATGACGCCA 58.982 45.000 0.00 0.00 0.00 5.69
4481 5476 7.327214 ACAGAAATAGGAGATCACAACTTCTC 58.673 38.462 0.00 0.00 38.10 2.87
4563 5597 6.389906 AGCTGATAAACTGGCATAACAAAAC 58.610 36.000 0.00 0.00 0.00 2.43
4634 5671 2.433838 CAGCTCCTGTCACCAGCG 60.434 66.667 0.00 0.00 38.26 5.18
4685 5730 3.862267 GTCCTCGATCTTTGTCATCACAG 59.138 47.826 0.00 0.00 32.71 3.66
4791 5836 1.459592 CTGCCAGGAAACGTTTACTCG 59.540 52.381 23.01 17.77 0.00 4.18
4804 5850 1.097547 CGCCACCTATTTCTGCCAGG 61.098 60.000 0.00 0.00 35.45 4.45
4848 5895 0.466189 ACCCAAGTGCTGGTGACAAG 60.466 55.000 0.00 0.00 44.76 3.16
4910 5962 3.132160 AGAATTCATCGCATCAGCTCAG 58.868 45.455 8.44 0.00 39.10 3.35
4937 5989 4.393062 CGAGCATAAAAATGGACACACTCT 59.607 41.667 0.00 0.00 0.00 3.24
4942 5994 4.088648 CGAACGAGCATAAAAATGGACAC 58.911 43.478 0.00 0.00 0.00 3.67
4943 5995 3.749088 ACGAACGAGCATAAAAATGGACA 59.251 39.130 0.14 0.00 0.00 4.02
5049 6121 3.517602 TCAATCTGTACACATGCGGTAC 58.482 45.455 17.11 17.11 41.11 3.34
5050 6122 3.878160 TCAATCTGTACACATGCGGTA 57.122 42.857 0.00 0.00 0.00 4.02
5052 6124 2.219445 CGATCAATCTGTACACATGCGG 59.781 50.000 0.00 0.00 0.00 5.69
5078 6154 3.559171 GGGAGTGAATCTTGTAACTGCCA 60.559 47.826 7.26 0.00 46.91 4.92
5096 6172 4.206477 TGTACATTCTCACACATGGGAG 57.794 45.455 0.00 4.66 46.71 4.30
5097 6173 4.224818 TCATGTACATTCTCACACATGGGA 59.775 41.667 5.37 0.00 45.30 4.37
5123 6199 5.105567 TGTTTTGAGTTACACAAGGAGGA 57.894 39.130 0.00 0.00 0.00 3.71
5124 6200 4.881850 ACTGTTTTGAGTTACACAAGGAGG 59.118 41.667 0.00 0.00 0.00 4.30
5125 6201 6.436843 AACTGTTTTGAGTTACACAAGGAG 57.563 37.500 0.00 0.00 34.29 3.69
5140 6216 4.155280 AGCACGACAACTTGTAACTGTTTT 59.845 37.500 0.00 0.00 0.00 2.43
5141 6217 3.687698 AGCACGACAACTTGTAACTGTTT 59.312 39.130 0.00 0.00 0.00 2.83
5142 6218 3.267483 AGCACGACAACTTGTAACTGTT 58.733 40.909 0.00 0.00 0.00 3.16
5143 6219 2.864343 GAGCACGACAACTTGTAACTGT 59.136 45.455 0.00 0.00 0.00 3.55
5201 6296 4.695231 CTCGTGCCCGTCGTCGTT 62.695 66.667 0.71 0.00 35.01 3.85
5318 6413 4.035102 GGGCTCGGGTTCAGGCTT 62.035 66.667 0.00 0.00 36.67 4.35
5330 6425 1.605058 TTGGACAGTCTAGCGGGCTC 61.605 60.000 0.00 0.00 0.00 4.70
5361 6456 3.502595 GCATTGCTCAGTGATGATATGCT 59.497 43.478 16.25 0.00 0.00 3.79
5362 6457 3.667166 CGCATTGCTCAGTGATGATATGC 60.667 47.826 7.12 14.66 0.00 3.14
5373 6470 2.789917 GTCAGCCGCATTGCTCAG 59.210 61.111 7.12 0.00 40.32 3.35
5398 6495 3.669824 GCATCCATCGTGCATGAATGATC 60.670 47.826 18.93 11.35 42.08 2.92
5404 6501 4.959399 TGCATCCATCGTGCATGA 57.041 50.000 11.83 11.83 46.76 3.07
5415 6512 0.533755 CGTCTCCTTGGGATGCATCC 60.534 60.000 33.90 33.90 46.41 3.51
5607 6708 2.222013 GGAGGAGTCCGGGTGGTTT 61.222 63.158 0.00 0.00 36.30 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.