Multiple sequence alignment - TraesCS4B01G273400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G273400 chr4B 100.000 6605 0 0 993 7597 551065047 551071651 0.000000e+00 12198.0
1 TraesCS4B01G273400 chr4B 100.000 740 0 0 1 740 551064055 551064794 0.000000e+00 1367.0
2 TraesCS4B01G273400 chr4B 96.260 508 18 1 6871 7377 624575515 624575008 0.000000e+00 832.0
3 TraesCS4B01G273400 chr4B 84.463 354 36 9 3886 4235 362881210 362881548 1.580000e-86 331.0
4 TraesCS4B01G273400 chr4B 96.571 175 5 1 1 175 588827828 588828001 9.650000e-74 289.0
5 TraesCS4B01G273400 chr4B 94.350 177 8 2 1 175 310260100 310260276 3.490000e-68 270.0
6 TraesCS4B01G273400 chr4B 83.803 142 23 0 151 292 310255083 310254942 1.330000e-27 135.0
7 TraesCS4B01G273400 chr4B 95.161 62 2 1 266 326 588828142 588828203 6.270000e-16 97.1
8 TraesCS4B01G273400 chr4D 93.073 5457 240 66 993 6371 442730635 442736031 0.000000e+00 7856.0
9 TraesCS4B01G273400 chr4D 92.222 270 15 5 6407 6672 442736113 442736380 2.000000e-100 377.0
10 TraesCS4B01G273400 chr4D 82.038 373 35 15 4248 4613 329662908 329663255 9.650000e-74 289.0
11 TraesCS4B01G273400 chr4D 91.626 203 16 1 4658 4859 329663278 329663480 5.800000e-71 279.0
12 TraesCS4B01G273400 chr4D 92.632 190 14 0 6012 6201 411045225 411045414 2.700000e-69 274.0
13 TraesCS4B01G273400 chr4D 93.514 185 4 4 6667 6850 442736434 442736611 1.260000e-67 268.0
14 TraesCS4B01G273400 chr4D 87.200 250 11 6 411 657 442729965 442730196 1.630000e-66 265.0
15 TraesCS4B01G273400 chr4D 97.849 93 2 0 6407 6499 411045905 411045997 2.190000e-35 161.0
16 TraesCS4B01G273400 chr4D 100.000 39 0 0 6241 6279 411045424 411045462 1.060000e-08 73.1
17 TraesCS4B01G273400 chr4D 100.000 37 0 0 6371 6407 442736049 442736085 1.370000e-07 69.4
18 TraesCS4B01G273400 chr4A 93.345 5244 229 53 1000 6201 24835842 24830677 0.000000e+00 7640.0
19 TraesCS4B01G273400 chr4A 87.458 598 31 12 6309 6868 24830627 24830036 0.000000e+00 649.0
20 TraesCS4B01G273400 chr4A 82.493 337 11 16 411 740 24836160 24835865 1.270000e-62 252.0
21 TraesCS4B01G273400 chr4A 94.231 52 2 1 276 326 676487275 676487224 2.270000e-10 78.7
22 TraesCS4B01G273400 chr4A 93.878 49 3 0 6229 6277 24830676 24830628 2.940000e-09 75.0
23 TraesCS4B01G273400 chr3A 98.627 510 7 0 6871 7380 435780243 435780752 0.000000e+00 904.0
24 TraesCS4B01G273400 chr3A 96.347 219 8 0 7379 7597 435780782 435781000 2.020000e-95 361.0
25 TraesCS4B01G273400 chr3B 97.864 515 10 1 6866 7380 15809391 15809904 0.000000e+00 889.0
26 TraesCS4B01G273400 chr3B 98.039 510 10 0 6871 7380 531805020 531805529 0.000000e+00 887.0
27 TraesCS4B01G273400 chr3B 96.693 514 17 0 6867 7380 99089189 99089702 0.000000e+00 856.0
28 TraesCS4B01G273400 chr3B 97.260 219 6 0 7379 7597 15809934 15810152 9.310000e-99 372.0
29 TraesCS4B01G273400 chr3B 96.347 219 8 0 7379 7597 531805559 531805777 2.020000e-95 361.0
30 TraesCS4B01G273400 chr3B 95.392 217 9 1 7379 7594 99089732 99089948 2.030000e-90 344.0
31 TraesCS4B01G273400 chr3B 95.455 176 7 1 1 175 420917102 420916927 5.800000e-71 279.0
32 TraesCS4B01G273400 chr3B 90.678 118 10 1 151 268 604249281 604249165 1.020000e-33 156.0
33 TraesCS4B01G273400 chr3B 90.598 117 10 1 151 266 420916874 420916758 3.670000e-33 154.0
34 TraesCS4B01G273400 chr3B 93.878 49 2 1 278 325 445245347 445245299 1.060000e-08 73.1
35 TraesCS4B01G273400 chr3B 92.157 51 3 1 276 325 708509008 708508958 3.800000e-08 71.3
36 TraesCS4B01G273400 chr7B 97.471 514 13 0 6867 7380 376384513 376385026 0.000000e+00 878.0
37 TraesCS4B01G273400 chr7B 97.260 219 6 0 7379 7597 376385056 376385274 9.310000e-99 372.0
38 TraesCS4B01G273400 chr6D 95.331 514 21 3 6867 7380 456687650 456687140 0.000000e+00 813.0
39 TraesCS4B01G273400 chr6D 96.347 219 8 0 7379 7597 456687111 456686893 2.020000e-95 361.0
40 TraesCS4B01G273400 chr6D 94.737 190 10 0 6012 6201 332314482 332314671 5.760000e-76 296.0
41 TraesCS4B01G273400 chr5A 95.098 510 24 1 6870 7379 437404092 437403584 0.000000e+00 802.0
42 TraesCS4B01G273400 chr7D 94.521 511 27 1 6871 7380 480008520 480009030 0.000000e+00 787.0
43 TraesCS4B01G273400 chr7D 91.667 336 27 1 4204 4538 529899838 529899503 1.490000e-126 464.0
44 TraesCS4B01G273400 chr7D 95.890 219 9 0 7379 7597 480009060 480009278 9.380000e-94 355.0
45 TraesCS4B01G273400 chr7D 87.170 265 22 1 3880 4144 529900088 529899836 2.680000e-74 291.0
46 TraesCS4B01G273400 chr3D 90.305 361 31 3 4204 4560 578630723 578631083 3.210000e-128 470.0
47 TraesCS4B01G273400 chr3D 85.347 389 37 10 4230 4613 226697942 226698315 1.200000e-102 385.0
48 TraesCS4B01G273400 chr3D 94.211 190 11 0 6012 6201 614021791 614021980 2.680000e-74 291.0
49 TraesCS4B01G273400 chr3D 86.792 265 25 2 3880 4144 578630471 578630725 3.470000e-73 287.0
50 TraesCS4B01G273400 chr3D 90.686 204 17 1 4658 4859 226698338 226698541 3.490000e-68 270.0
51 TraesCS4B01G273400 chr3D 96.774 93 3 0 6407 6499 614022471 614022563 1.020000e-33 156.0
52 TraesCS4B01G273400 chr3D 92.405 79 6 0 4066 4144 350784715 350784793 6.230000e-21 113.0
53 TraesCS4B01G273400 chr3D 100.000 39 0 0 6241 6279 614021990 614022028 1.060000e-08 73.1
54 TraesCS4B01G273400 chr2A 87.812 361 13 4 6012 6372 248353998 248353669 1.990000e-105 394.0
55 TraesCS4B01G273400 chr2A 81.841 391 38 11 4230 4613 603936471 603936835 1.600000e-76 298.0
56 TraesCS4B01G273400 chr2A 88.725 204 21 1 4658 4859 603936858 603937061 1.640000e-61 248.0
57 TraesCS4B01G273400 chr2D 84.794 388 38 12 4230 4613 268725474 268725844 3.350000e-98 370.0
58 TraesCS4B01G273400 chr2D 95.775 213 9 0 7379 7591 369696328 369696540 2.030000e-90 344.0
59 TraesCS4B01G273400 chr2D 83.110 373 33 16 4247 4613 281707164 281707512 5.720000e-81 313.0
60 TraesCS4B01G273400 chr2D 91.176 204 16 1 4658 4859 281707535 281707738 7.510000e-70 276.0
61 TraesCS4B01G273400 chr2D 85.821 268 24 3 3880 4143 188859795 188859538 9.710000e-69 272.0
62 TraesCS4B01G273400 chr2D 89.706 204 19 1 4658 4859 268725867 268726070 7.560000e-65 259.0
63 TraesCS4B01G273400 chr1B 84.367 371 39 10 4248 4613 559950981 559950625 5.640000e-91 346.0
64 TraesCS4B01G273400 chr1B 89.109 202 21 1 4658 4858 559950602 559950401 4.550000e-62 250.0
65 TraesCS4B01G273400 chr1A 94.521 219 11 1 7379 7597 56909513 56909296 3.400000e-88 337.0
66 TraesCS4B01G273400 chr1A 84.848 330 34 7 4249 4576 235836264 235835949 1.230000e-82 318.0
67 TraesCS4B01G273400 chr2B 96.571 175 4 2 1 175 454453036 454453208 9.650000e-74 289.0
68 TraesCS4B01G273400 chr2B 96.571 175 5 1 1 175 454477169 454477342 9.650000e-74 289.0
69 TraesCS4B01G273400 chr2B 94.886 176 7 2 1 175 549356872 549357046 2.700000e-69 274.0
70 TraesCS4B01G273400 chr2B 86.014 143 19 1 151 293 68142581 68142440 1.320000e-32 152.0
71 TraesCS4B01G273400 chr2B 91.228 57 4 1 279 334 170779796 170779852 8.170000e-10 76.8
72 TraesCS4B01G273400 chr6B 96.045 177 4 2 1 175 181107204 181107029 1.250000e-72 285.0
73 TraesCS4B01G273400 chr6B 95.429 175 8 0 1 175 679255538 679255712 5.800000e-71 279.0
74 TraesCS4B01G273400 chr6B 94.915 177 7 2 1 175 26495408 26495232 7.510000e-70 276.0
75 TraesCS4B01G273400 chr6B 84.722 144 22 0 151 294 26500366 26500509 2.210000e-30 145.0
76 TraesCS4B01G273400 chr6B 84.615 143 20 2 151 292 679248674 679248533 2.860000e-29 141.0
77 TraesCS4B01G273400 chr6B 83.916 143 23 0 151 293 679255765 679255907 3.700000e-28 137.0
78 TraesCS4B01G273400 chr6B 89.231 65 6 1 263 326 644390529 644390465 6.320000e-11 80.5
79 TraesCS4B01G273400 chr6B 90.196 51 5 0 276 326 89119835 89119785 4.920000e-07 67.6
80 TraesCS4B01G273400 chr6B 85.246 61 8 1 267 326 637853680 637853740 2.290000e-05 62.1
81 TraesCS4B01G273400 chr5B 91.525 118 7 3 151 266 506969724 506969840 7.890000e-35 159.0
82 TraesCS4B01G273400 chr5B 89.916 119 11 1 151 269 709188813 709188930 1.320000e-32 152.0
83 TraesCS4B01G273400 chr5D 93.671 79 5 0 4066 4144 310568977 310569055 1.340000e-22 119.0
84 TraesCS4B01G273400 chr1D 93.506 77 5 0 4066 4142 471613654 471613578 1.730000e-21 115.0
85 TraesCS4B01G273400 chr7A 90.566 53 4 1 276 327 728528034 728527982 1.370000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G273400 chr4B 551064055 551071651 7596 False 6782.50 12198 100.0000 1 7597 2 chr4B.!!$F3 7596
1 TraesCS4B01G273400 chr4B 624575008 624575515 507 True 832.00 832 96.2600 6871 7377 1 chr4B.!!$R2 506
2 TraesCS4B01G273400 chr4D 442729965 442736611 6646 False 1767.08 7856 93.2018 411 6850 5 chr4D.!!$F3 6439
3 TraesCS4B01G273400 chr4D 329662908 329663480 572 False 284.00 289 86.8320 4248 4859 2 chr4D.!!$F1 611
4 TraesCS4B01G273400 chr4A 24830036 24836160 6124 True 2154.00 7640 89.2935 411 6868 4 chr4A.!!$R2 6457
5 TraesCS4B01G273400 chr3A 435780243 435781000 757 False 632.50 904 97.4870 6871 7597 2 chr3A.!!$F1 726
6 TraesCS4B01G273400 chr3B 15809391 15810152 761 False 630.50 889 97.5620 6866 7597 2 chr3B.!!$F1 731
7 TraesCS4B01G273400 chr3B 531805020 531805777 757 False 624.00 887 97.1930 6871 7597 2 chr3B.!!$F3 726
8 TraesCS4B01G273400 chr3B 99089189 99089948 759 False 600.00 856 96.0425 6867 7594 2 chr3B.!!$F2 727
9 TraesCS4B01G273400 chr7B 376384513 376385274 761 False 625.00 878 97.3655 6867 7597 2 chr7B.!!$F1 730
10 TraesCS4B01G273400 chr6D 456686893 456687650 757 True 587.00 813 95.8390 6867 7597 2 chr6D.!!$R1 730
11 TraesCS4B01G273400 chr5A 437403584 437404092 508 True 802.00 802 95.0980 6870 7379 1 chr5A.!!$R1 509
12 TraesCS4B01G273400 chr7D 480008520 480009278 758 False 571.00 787 95.2055 6871 7597 2 chr7D.!!$F1 726
13 TraesCS4B01G273400 chr7D 529899503 529900088 585 True 377.50 464 89.4185 3880 4538 2 chr7D.!!$R1 658
14 TraesCS4B01G273400 chr3D 578630471 578631083 612 False 378.50 470 88.5485 3880 4560 2 chr3D.!!$F3 680
15 TraesCS4B01G273400 chr3D 226697942 226698541 599 False 327.50 385 88.0165 4230 4859 2 chr3D.!!$F2 629
16 TraesCS4B01G273400 chr2A 603936471 603937061 590 False 273.00 298 85.2830 4230 4859 2 chr2A.!!$F1 629
17 TraesCS4B01G273400 chr2D 268725474 268726070 596 False 314.50 370 87.2500 4230 4859 2 chr2D.!!$F2 629
18 TraesCS4B01G273400 chr2D 281707164 281707738 574 False 294.50 313 87.1430 4247 4859 2 chr2D.!!$F3 612
19 TraesCS4B01G273400 chr1B 559950401 559950981 580 True 298.00 346 86.7380 4248 4858 2 chr1B.!!$R1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.030092 CCCTCCCCACCTTATCCAGA 60.030 60.000 0.00 0.00 0.00 3.86 F
387 388 0.031994 GCAAAGCAAATGTGTCCCGT 59.968 50.000 0.00 0.00 0.00 5.28 F
1083 1193 0.605589 GGACGGGAACAAGGACAAGG 60.606 60.000 0.00 0.00 0.00 3.61 F
2102 2236 0.960861 GTGAACCAGTAAGGCCAGCC 60.961 60.000 5.01 0.00 43.14 4.85 F
2584 2722 1.414919 TGTTTCCGTCTTACCTGCTGT 59.585 47.619 0.00 0.00 0.00 4.40 F
3185 3324 0.478507 AGTAGGTAATGCATGGGGCC 59.521 55.000 0.00 0.00 43.89 5.80 F
3699 3838 1.398390 CCCGCTGCTATTTCTGTCAAC 59.602 52.381 0.00 0.00 0.00 3.18 F
5343 5543 1.202627 GGAGCTTATCAGGCCTGACTG 60.203 57.143 37.39 27.56 43.11 3.51 F
6140 6376 0.548989 ATTACGGGCATGGCTACCAA 59.451 50.000 19.78 8.66 36.95 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 1834 2.430465 TCCACTCTTCTGATTGCAAGC 58.570 47.619 7.99 7.99 0.00 4.01 R
2102 2236 1.233019 ACGGGGTATCGTCTACATCG 58.767 55.000 0.00 0.00 39.34 3.84 R
2584 2722 2.655090 TTGTGGCTGGAGTTTGATGA 57.345 45.000 0.00 0.00 0.00 2.92 R
3167 3306 0.889186 CGGCCCCATGCATTACCTAC 60.889 60.000 0.00 0.00 43.89 3.18 R
3676 3815 2.189499 CAGAAATAGCAGCGGGGGC 61.189 63.158 0.00 0.00 0.00 5.80 R
5117 5317 2.368439 TCCAAAGGAGCCATTTCGATG 58.632 47.619 0.00 0.00 0.00 3.84 R
5443 5643 0.607489 GCCTGTGTCTCCTGCACAAT 60.607 55.000 0.00 0.00 44.86 2.71 R
6152 6388 0.321671 GACCTGTTCCTGTGCTGCTA 59.678 55.000 0.00 0.00 0.00 3.49 R
7479 7870 0.732571 GAACGACGGGGTATACACGA 59.267 55.000 21.22 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.900154 GAGTTGAGCTCGGTGGAG 57.100 61.111 9.64 0.00 43.46 3.86
35 36 2.268022 GAGTTGAGCTCGGTGGAGA 58.732 57.895 9.64 0.00 43.27 3.71
36 37 0.172352 GAGTTGAGCTCGGTGGAGAG 59.828 60.000 9.64 0.00 43.27 3.20
37 38 1.216710 GTTGAGCTCGGTGGAGAGG 59.783 63.158 9.64 0.00 43.27 3.69
40 41 2.441051 AGCTCGGTGGAGAGGTGA 59.559 61.111 0.00 0.00 45.93 4.02
41 42 1.000993 AGCTCGGTGGAGAGGTGAT 59.999 57.895 0.00 0.00 45.93 3.06
42 43 1.142748 GCTCGGTGGAGAGGTGATG 59.857 63.158 0.00 0.00 43.27 3.07
43 44 1.608717 GCTCGGTGGAGAGGTGATGT 61.609 60.000 0.00 0.00 43.27 3.06
44 45 0.174389 CTCGGTGGAGAGGTGATGTG 59.826 60.000 0.00 0.00 43.27 3.21
45 46 1.219124 CGGTGGAGAGGTGATGTGG 59.781 63.158 0.00 0.00 0.00 4.17
46 47 1.604378 GGTGGAGAGGTGATGTGGG 59.396 63.158 0.00 0.00 0.00 4.61
47 48 1.078143 GTGGAGAGGTGATGTGGGC 60.078 63.158 0.00 0.00 0.00 5.36
48 49 1.229625 TGGAGAGGTGATGTGGGCT 60.230 57.895 0.00 0.00 0.00 5.19
49 50 1.222936 GGAGAGGTGATGTGGGCTG 59.777 63.158 0.00 0.00 0.00 4.85
50 51 1.267574 GGAGAGGTGATGTGGGCTGA 61.268 60.000 0.00 0.00 0.00 4.26
51 52 0.615331 GAGAGGTGATGTGGGCTGAA 59.385 55.000 0.00 0.00 0.00 3.02
52 53 1.211457 GAGAGGTGATGTGGGCTGAAT 59.789 52.381 0.00 0.00 0.00 2.57
53 54 1.064906 AGAGGTGATGTGGGCTGAATG 60.065 52.381 0.00 0.00 0.00 2.67
54 55 0.994247 AGGTGATGTGGGCTGAATGA 59.006 50.000 0.00 0.00 0.00 2.57
55 56 1.064906 AGGTGATGTGGGCTGAATGAG 60.065 52.381 0.00 0.00 0.00 2.90
56 57 1.340405 GGTGATGTGGGCTGAATGAGT 60.340 52.381 0.00 0.00 0.00 3.41
57 58 1.741706 GTGATGTGGGCTGAATGAGTG 59.258 52.381 0.00 0.00 0.00 3.51
58 59 1.340308 TGATGTGGGCTGAATGAGTGG 60.340 52.381 0.00 0.00 0.00 4.00
59 60 0.700564 ATGTGGGCTGAATGAGTGGT 59.299 50.000 0.00 0.00 0.00 4.16
60 61 0.478072 TGTGGGCTGAATGAGTGGTT 59.522 50.000 0.00 0.00 0.00 3.67
61 62 0.883833 GTGGGCTGAATGAGTGGTTG 59.116 55.000 0.00 0.00 0.00 3.77
62 63 0.770499 TGGGCTGAATGAGTGGTTGA 59.230 50.000 0.00 0.00 0.00 3.18
63 64 1.271543 TGGGCTGAATGAGTGGTTGAG 60.272 52.381 0.00 0.00 0.00 3.02
64 65 1.457346 GGCTGAATGAGTGGTTGAGG 58.543 55.000 0.00 0.00 0.00 3.86
65 66 1.003580 GGCTGAATGAGTGGTTGAGGA 59.996 52.381 0.00 0.00 0.00 3.71
66 67 2.354259 GCTGAATGAGTGGTTGAGGAG 58.646 52.381 0.00 0.00 0.00 3.69
67 68 2.938756 GCTGAATGAGTGGTTGAGGAGG 60.939 54.545 0.00 0.00 0.00 4.30
68 69 2.568956 CTGAATGAGTGGTTGAGGAGGA 59.431 50.000 0.00 0.00 0.00 3.71
69 70 2.568956 TGAATGAGTGGTTGAGGAGGAG 59.431 50.000 0.00 0.00 0.00 3.69
70 71 1.577736 ATGAGTGGTTGAGGAGGAGG 58.422 55.000 0.00 0.00 0.00 4.30
71 72 0.545309 TGAGTGGTTGAGGAGGAGGG 60.545 60.000 0.00 0.00 0.00 4.30
72 73 1.229658 AGTGGTTGAGGAGGAGGGG 60.230 63.158 0.00 0.00 0.00 4.79
73 74 1.229529 GTGGTTGAGGAGGAGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
74 75 0.840722 GTGGTTGAGGAGGAGGGGAA 60.841 60.000 0.00 0.00 0.00 3.97
75 76 0.121197 TGGTTGAGGAGGAGGGGAAT 59.879 55.000 0.00 0.00 0.00 3.01
76 77 1.368203 TGGTTGAGGAGGAGGGGAATA 59.632 52.381 0.00 0.00 0.00 1.75
77 78 2.021042 TGGTTGAGGAGGAGGGGAATAT 60.021 50.000 0.00 0.00 0.00 1.28
78 79 3.056832 GGTTGAGGAGGAGGGGAATATT 58.943 50.000 0.00 0.00 0.00 1.28
79 80 3.073209 GGTTGAGGAGGAGGGGAATATTC 59.927 52.174 6.93 6.93 0.00 1.75
80 81 3.716872 GTTGAGGAGGAGGGGAATATTCA 59.283 47.826 17.07 0.00 0.00 2.57
81 82 3.591789 TGAGGAGGAGGGGAATATTCAG 58.408 50.000 17.07 0.00 0.00 3.02
82 83 2.304470 GAGGAGGAGGGGAATATTCAGC 59.696 54.545 17.07 0.72 0.00 4.26
83 84 1.352687 GGAGGAGGGGAATATTCAGCC 59.647 57.143 17.07 9.61 0.00 4.85
84 85 1.352687 GAGGAGGGGAATATTCAGCCC 59.647 57.143 17.73 17.73 41.28 5.19
89 90 0.405973 GGGAATATTCAGCCCCTCCC 59.594 60.000 17.07 3.52 35.76 4.30
90 91 0.405973 GGAATATTCAGCCCCTCCCC 59.594 60.000 17.07 0.00 0.00 4.81
91 92 1.149101 GAATATTCAGCCCCTCCCCA 58.851 55.000 10.68 0.00 0.00 4.96
92 93 0.853530 AATATTCAGCCCCTCCCCAC 59.146 55.000 0.00 0.00 0.00 4.61
93 94 1.068352 ATATTCAGCCCCTCCCCACC 61.068 60.000 0.00 0.00 0.00 4.61
94 95 2.208562 TATTCAGCCCCTCCCCACCT 62.209 60.000 0.00 0.00 0.00 4.00
95 96 3.705709 TATTCAGCCCCTCCCCACCTT 62.706 57.143 0.00 0.00 0.00 3.50
96 97 2.286121 CAGCCCCTCCCCACCTTA 60.286 66.667 0.00 0.00 0.00 2.69
97 98 1.697754 CAGCCCCTCCCCACCTTAT 60.698 63.158 0.00 0.00 0.00 1.73
98 99 1.386057 AGCCCCTCCCCACCTTATC 60.386 63.158 0.00 0.00 0.00 1.75
99 100 2.461739 GCCCCTCCCCACCTTATCC 61.462 68.421 0.00 0.00 0.00 2.59
100 101 1.005556 CCCCTCCCCACCTTATCCA 59.994 63.158 0.00 0.00 0.00 3.41
101 102 1.062488 CCCCTCCCCACCTTATCCAG 61.062 65.000 0.00 0.00 0.00 3.86
102 103 0.030092 CCCTCCCCACCTTATCCAGA 60.030 60.000 0.00 0.00 0.00 3.86
103 104 1.628043 CCCTCCCCACCTTATCCAGAA 60.628 57.143 0.00 0.00 0.00 3.02
104 105 1.490910 CCTCCCCACCTTATCCAGAAC 59.509 57.143 0.00 0.00 0.00 3.01
105 106 2.196595 CTCCCCACCTTATCCAGAACA 58.803 52.381 0.00 0.00 0.00 3.18
106 107 1.913419 TCCCCACCTTATCCAGAACAC 59.087 52.381 0.00 0.00 0.00 3.32
107 108 1.633432 CCCCACCTTATCCAGAACACA 59.367 52.381 0.00 0.00 0.00 3.72
108 109 2.356125 CCCCACCTTATCCAGAACACAG 60.356 54.545 0.00 0.00 0.00 3.66
109 110 2.356125 CCCACCTTATCCAGAACACAGG 60.356 54.545 0.00 0.00 0.00 4.00
110 111 2.571653 CCACCTTATCCAGAACACAGGA 59.428 50.000 0.00 0.00 38.50 3.86
111 112 3.600388 CACCTTATCCAGAACACAGGAC 58.400 50.000 0.00 0.00 36.60 3.85
112 113 2.572104 ACCTTATCCAGAACACAGGACC 59.428 50.000 0.00 0.00 36.60 4.46
113 114 2.092914 CCTTATCCAGAACACAGGACCC 60.093 54.545 0.00 0.00 36.60 4.46
114 115 2.642171 TATCCAGAACACAGGACCCT 57.358 50.000 0.00 0.00 36.60 4.34
115 116 2.642171 ATCCAGAACACAGGACCCTA 57.358 50.000 0.00 0.00 36.60 3.53
116 117 1.640917 TCCAGAACACAGGACCCTAC 58.359 55.000 0.00 0.00 0.00 3.18
117 118 0.613777 CCAGAACACAGGACCCTACC 59.386 60.000 0.00 0.00 0.00 3.18
118 119 0.246635 CAGAACACAGGACCCTACCG 59.753 60.000 0.00 0.00 34.73 4.02
119 120 1.079336 GAACACAGGACCCTACCGC 60.079 63.158 0.00 0.00 34.73 5.68
120 121 2.517484 GAACACAGGACCCTACCGCC 62.517 65.000 0.00 0.00 34.73 6.13
121 122 3.000819 CACAGGACCCTACCGCCA 61.001 66.667 0.00 0.00 34.73 5.69
122 123 2.683933 ACAGGACCCTACCGCCAG 60.684 66.667 0.00 0.00 34.73 4.85
123 124 2.363795 CAGGACCCTACCGCCAGA 60.364 66.667 0.00 0.00 34.73 3.86
124 125 2.042843 AGGACCCTACCGCCAGAG 60.043 66.667 0.00 0.00 34.73 3.35
125 126 3.155167 GGACCCTACCGCCAGAGG 61.155 72.222 0.00 0.00 37.30 3.69
128 129 2.281091 CCCTACCGCCAGAGGGTA 59.719 66.667 3.70 0.00 46.57 3.69
129 130 1.152312 CCCTACCGCCAGAGGGTAT 60.152 63.158 3.70 0.00 46.57 2.73
130 131 1.472662 CCCTACCGCCAGAGGGTATG 61.473 65.000 3.70 0.00 46.57 2.39
131 132 1.472662 CCTACCGCCAGAGGGTATGG 61.473 65.000 0.00 0.00 39.22 2.74
136 137 4.288234 CCAGAGGGTATGGCGGTA 57.712 61.111 0.00 0.00 0.00 4.02
137 138 2.050269 CCAGAGGGTATGGCGGTAG 58.950 63.158 0.00 0.00 0.00 3.18
138 139 1.472662 CCAGAGGGTATGGCGGTAGG 61.473 65.000 0.00 0.00 0.00 3.18
139 140 1.837499 AGAGGGTATGGCGGTAGGC 60.837 63.158 0.00 0.00 44.11 3.93
140 141 1.837499 GAGGGTATGGCGGTAGGCT 60.837 63.158 0.00 0.00 44.18 4.58
141 142 1.817911 GAGGGTATGGCGGTAGGCTC 61.818 65.000 0.00 0.00 44.18 4.70
142 143 2.741747 GGTATGGCGGTAGGCTCC 59.258 66.667 0.00 0.00 44.18 4.70
143 144 2.138179 GGTATGGCGGTAGGCTCCA 61.138 63.158 0.00 0.00 44.18 3.86
144 145 1.367840 GTATGGCGGTAGGCTCCAG 59.632 63.158 0.00 0.00 44.18 3.86
145 146 1.075525 TATGGCGGTAGGCTCCAGT 60.076 57.895 0.00 0.00 44.18 4.00
146 147 0.186630 TATGGCGGTAGGCTCCAGTA 59.813 55.000 0.00 0.00 44.18 2.74
147 148 0.689745 ATGGCGGTAGGCTCCAGTAA 60.690 55.000 0.00 0.00 44.18 2.24
148 149 1.143401 GGCGGTAGGCTCCAGTAAC 59.857 63.158 0.00 0.00 42.94 2.50
149 150 1.226888 GCGGTAGGCTCCAGTAACG 60.227 63.158 0.00 0.00 39.11 3.18
150 151 1.941999 GCGGTAGGCTCCAGTAACGT 61.942 60.000 0.00 0.00 39.11 3.99
151 152 1.382522 CGGTAGGCTCCAGTAACGTA 58.617 55.000 0.00 0.00 0.00 3.57
152 153 1.064654 CGGTAGGCTCCAGTAACGTAC 59.935 57.143 0.00 0.00 0.00 3.67
153 154 1.406898 GGTAGGCTCCAGTAACGTACC 59.593 57.143 0.00 0.00 37.57 3.34
154 155 1.064654 GTAGGCTCCAGTAACGTACCG 59.935 57.143 0.00 0.00 0.00 4.02
155 156 1.517913 GGCTCCAGTAACGTACCGC 60.518 63.158 0.00 0.00 0.00 5.68
156 157 1.517913 GCTCCAGTAACGTACCGCC 60.518 63.158 0.00 0.00 0.00 6.13
157 158 1.226491 CTCCAGTAACGTACCGCCG 60.226 63.158 0.00 0.00 0.00 6.46
158 159 1.926511 CTCCAGTAACGTACCGCCGT 61.927 60.000 0.00 0.00 44.23 5.68
159 160 0.675208 TCCAGTAACGTACCGCCGTA 60.675 55.000 0.00 0.00 40.85 4.02
160 161 0.248215 CCAGTAACGTACCGCCGTAG 60.248 60.000 0.00 0.00 40.85 3.51
172 173 3.767816 CCGTAGGCTATGGCGGTA 58.232 61.111 19.41 0.00 46.14 4.02
173 174 1.585006 CCGTAGGCTATGGCGGTAG 59.415 63.158 19.41 0.00 46.14 3.18
174 175 1.585006 CGTAGGCTATGGCGGTAGG 59.415 63.158 5.81 0.00 39.81 3.18
175 176 1.874345 CGTAGGCTATGGCGGTAGGG 61.874 65.000 5.81 0.00 39.81 3.53
176 177 1.911766 TAGGCTATGGCGGTAGGGC 60.912 63.158 0.00 0.00 39.81 5.19
185 186 2.895372 CGGTAGGGCACGCAATCC 60.895 66.667 0.00 0.00 0.00 3.01
186 187 2.590092 GGTAGGGCACGCAATCCT 59.410 61.111 0.00 0.00 34.85 3.24
187 188 1.827394 GGTAGGGCACGCAATCCTA 59.173 57.895 0.00 0.00 32.46 2.94
188 189 2.987752 GTAGGGCACGCAATCCTAC 58.012 57.895 7.07 7.07 43.95 3.18
189 190 0.532196 GTAGGGCACGCAATCCTACC 60.532 60.000 10.29 0.00 44.29 3.18
190 191 2.023414 TAGGGCACGCAATCCTACCG 62.023 60.000 0.00 0.00 32.46 4.02
191 192 3.573491 GGCACGCAATCCTACCGC 61.573 66.667 0.00 0.00 0.00 5.68
192 193 3.573491 GCACGCAATCCTACCGCC 61.573 66.667 0.00 0.00 0.00 6.13
193 194 2.125310 CACGCAATCCTACCGCCA 60.125 61.111 0.00 0.00 0.00 5.69
194 195 2.173669 CACGCAATCCTACCGCCAG 61.174 63.158 0.00 0.00 0.00 4.85
195 196 2.588877 CGCAATCCTACCGCCAGG 60.589 66.667 0.00 0.00 45.13 4.45
196 197 2.902343 GCAATCCTACCGCCAGGC 60.902 66.667 0.00 0.00 42.76 4.85
197 198 2.203209 CAATCCTACCGCCAGGCC 60.203 66.667 5.63 0.00 42.76 5.19
198 199 3.489513 AATCCTACCGCCAGGCCC 61.490 66.667 5.63 0.00 42.76 5.80
199 200 4.499116 ATCCTACCGCCAGGCCCT 62.499 66.667 5.63 0.00 42.76 5.19
200 201 4.733725 TCCTACCGCCAGGCCCTT 62.734 66.667 5.63 0.00 42.76 3.95
201 202 3.728373 CCTACCGCCAGGCCCTTT 61.728 66.667 5.63 0.00 42.76 3.11
202 203 2.438434 CTACCGCCAGGCCCTTTG 60.438 66.667 5.63 0.00 42.76 2.77
203 204 2.931105 TACCGCCAGGCCCTTTGA 60.931 61.111 5.63 0.00 42.76 2.69
204 205 2.270874 CTACCGCCAGGCCCTTTGAT 62.271 60.000 5.63 0.00 42.76 2.57
205 206 2.550699 TACCGCCAGGCCCTTTGATG 62.551 60.000 5.63 0.00 42.76 3.07
206 207 3.142838 CGCCAGGCCCTTTGATGG 61.143 66.667 5.63 0.00 35.84 3.51
207 208 2.037847 GCCAGGCCCTTTGATGGT 59.962 61.111 0.00 0.00 35.17 3.55
208 209 1.306296 GCCAGGCCCTTTGATGGTA 59.694 57.895 0.00 0.00 35.17 3.25
209 210 0.753111 GCCAGGCCCTTTGATGGTAG 60.753 60.000 0.00 0.00 35.17 3.18
210 211 0.106519 CCAGGCCCTTTGATGGTAGG 60.107 60.000 0.00 0.00 0.00 3.18
211 212 0.753111 CAGGCCCTTTGATGGTAGGC 60.753 60.000 0.00 0.00 43.09 3.93
212 213 1.214305 AGGCCCTTTGATGGTAGGCA 61.214 55.000 0.00 0.00 45.72 4.75
213 214 0.324275 GGCCCTTTGATGGTAGGCAA 60.324 55.000 0.00 0.00 45.72 4.52
214 215 1.555967 GCCCTTTGATGGTAGGCAAA 58.444 50.000 0.00 0.00 43.32 3.68
215 216 1.899142 GCCCTTTGATGGTAGGCAAAA 59.101 47.619 0.00 0.00 43.32 2.44
216 217 2.094026 GCCCTTTGATGGTAGGCAAAAG 60.094 50.000 0.00 0.00 43.32 2.27
217 218 2.497273 CCCTTTGATGGTAGGCAAAAGG 59.503 50.000 5.67 5.67 34.01 3.11
218 219 3.430453 CCTTTGATGGTAGGCAAAAGGA 58.570 45.455 6.64 0.00 34.01 3.36
219 220 4.026052 CCTTTGATGGTAGGCAAAAGGAT 58.974 43.478 6.64 0.00 34.01 3.24
220 221 4.098501 CCTTTGATGGTAGGCAAAAGGATC 59.901 45.833 6.64 0.00 34.01 3.36
221 222 4.314522 TTGATGGTAGGCAAAAGGATCA 57.685 40.909 0.00 0.00 0.00 2.92
222 223 3.889815 TGATGGTAGGCAAAAGGATCAG 58.110 45.455 0.00 0.00 0.00 2.90
223 224 3.523157 TGATGGTAGGCAAAAGGATCAGA 59.477 43.478 0.00 0.00 0.00 3.27
224 225 4.166725 TGATGGTAGGCAAAAGGATCAGAT 59.833 41.667 0.00 0.00 0.00 2.90
225 226 4.156455 TGGTAGGCAAAAGGATCAGATC 57.844 45.455 1.18 1.18 0.00 2.75
254 255 7.468141 AAAAATTCTGAACTGGGGTTAGATC 57.532 36.000 0.00 0.00 35.58 2.75
255 256 4.779993 ATTCTGAACTGGGGTTAGATCC 57.220 45.455 0.00 0.00 35.58 3.36
256 257 2.478292 TCTGAACTGGGGTTAGATCCC 58.522 52.381 0.00 0.00 46.31 3.85
285 286 3.703001 TTTGAACTGAGGTCAGATCCC 57.297 47.619 13.99 0.96 46.59 3.85
286 287 1.186200 TGAACTGAGGTCAGATCCCG 58.814 55.000 13.99 0.00 46.59 5.14
287 288 1.272480 TGAACTGAGGTCAGATCCCGA 60.272 52.381 13.99 0.00 46.59 5.14
288 289 1.825474 GAACTGAGGTCAGATCCCGAA 59.175 52.381 13.99 0.00 46.59 4.30
289 290 1.938585 ACTGAGGTCAGATCCCGAAA 58.061 50.000 13.99 0.00 46.59 3.46
290 291 2.472029 ACTGAGGTCAGATCCCGAAAT 58.528 47.619 13.99 0.00 46.59 2.17
291 292 2.840651 ACTGAGGTCAGATCCCGAAATT 59.159 45.455 13.99 0.00 46.59 1.82
292 293 3.118592 ACTGAGGTCAGATCCCGAAATTC 60.119 47.826 13.99 0.00 46.59 2.17
293 294 3.107601 TGAGGTCAGATCCCGAAATTCT 58.892 45.455 0.00 0.00 0.00 2.40
294 295 3.519510 TGAGGTCAGATCCCGAAATTCTT 59.480 43.478 0.00 0.00 0.00 2.52
295 296 4.019321 TGAGGTCAGATCCCGAAATTCTTT 60.019 41.667 0.00 0.00 0.00 2.52
296 297 4.518249 AGGTCAGATCCCGAAATTCTTTC 58.482 43.478 0.00 0.00 36.32 2.62
297 298 4.019321 AGGTCAGATCCCGAAATTCTTTCA 60.019 41.667 0.00 0.00 39.63 2.69
298 299 4.700213 GGTCAGATCCCGAAATTCTTTCAA 59.300 41.667 0.00 0.00 39.63 2.69
299 300 5.183140 GGTCAGATCCCGAAATTCTTTCAAA 59.817 40.000 0.00 0.00 39.63 2.69
300 301 6.294508 GGTCAGATCCCGAAATTCTTTCAAAA 60.295 38.462 0.00 0.00 39.63 2.44
301 302 7.145323 GTCAGATCCCGAAATTCTTTCAAAAA 58.855 34.615 0.00 0.00 39.63 1.94
302 303 7.327032 GTCAGATCCCGAAATTCTTTCAAAAAG 59.673 37.037 0.00 0.00 39.63 2.27
303 304 6.587608 CAGATCCCGAAATTCTTTCAAAAAGG 59.412 38.462 0.00 0.00 39.63 3.11
304 305 5.208463 TCCCGAAATTCTTTCAAAAAGGG 57.792 39.130 0.00 2.80 39.63 3.95
305 306 4.651962 TCCCGAAATTCTTTCAAAAAGGGT 59.348 37.500 8.45 0.00 39.63 4.34
306 307 4.988540 CCCGAAATTCTTTCAAAAAGGGTC 59.011 41.667 0.00 0.00 39.63 4.46
307 308 5.452636 CCCGAAATTCTTTCAAAAAGGGTCA 60.453 40.000 0.00 0.00 39.63 4.02
308 309 6.045955 CCGAAATTCTTTCAAAAAGGGTCAA 58.954 36.000 0.00 0.00 39.63 3.18
309 310 6.536941 CCGAAATTCTTTCAAAAAGGGTCAAA 59.463 34.615 0.00 0.00 39.63 2.69
310 311 7.065204 CCGAAATTCTTTCAAAAAGGGTCAAAA 59.935 33.333 0.00 0.00 39.63 2.44
311 312 7.902917 CGAAATTCTTTCAAAAAGGGTCAAAAC 59.097 33.333 0.00 0.00 39.63 2.43
312 313 8.628630 AAATTCTTTCAAAAAGGGTCAAAACA 57.371 26.923 0.00 0.00 0.00 2.83
313 314 7.609760 ATTCTTTCAAAAAGGGTCAAAACAC 57.390 32.000 0.00 0.00 0.00 3.32
314 315 5.164954 TCTTTCAAAAAGGGTCAAAACACG 58.835 37.500 0.00 0.00 32.44 4.49
315 316 4.785511 TTCAAAAAGGGTCAAAACACGA 57.214 36.364 0.00 0.00 32.44 4.35
316 317 4.785511 TCAAAAAGGGTCAAAACACGAA 57.214 36.364 0.00 0.00 32.44 3.85
317 318 5.135508 TCAAAAAGGGTCAAAACACGAAA 57.864 34.783 0.00 0.00 32.44 3.46
318 319 5.725362 TCAAAAAGGGTCAAAACACGAAAT 58.275 33.333 0.00 0.00 32.44 2.17
319 320 6.166982 TCAAAAAGGGTCAAAACACGAAATT 58.833 32.000 0.00 0.00 32.44 1.82
320 321 6.311690 TCAAAAAGGGTCAAAACACGAAATTC 59.688 34.615 0.00 0.00 32.44 2.17
321 322 3.619233 AGGGTCAAAACACGAAATTCG 57.381 42.857 14.35 14.35 46.93 3.34
322 323 2.292292 AGGGTCAAAACACGAAATTCGG 59.708 45.455 19.95 10.81 45.59 4.30
323 324 2.048498 GGTCAAAACACGAAATTCGGC 58.952 47.619 19.95 0.00 45.59 5.54
324 325 2.048498 GTCAAAACACGAAATTCGGCC 58.952 47.619 19.95 0.00 45.59 6.13
325 326 1.049251 CAAAACACGAAATTCGGCCG 58.951 50.000 22.12 22.12 45.59 6.13
326 327 0.039888 AAAACACGAAATTCGGCCGG 60.040 50.000 27.83 10.66 45.59 6.13
327 328 1.858372 AAACACGAAATTCGGCCGGG 61.858 55.000 27.83 10.30 45.59 5.73
328 329 2.435234 CACGAAATTCGGCCGGGA 60.435 61.111 27.83 15.39 45.59 5.14
329 330 2.125269 ACGAAATTCGGCCGGGAG 60.125 61.111 27.83 13.35 45.59 4.30
330 331 2.185867 CGAAATTCGGCCGGGAGA 59.814 61.111 27.83 9.69 36.00 3.71
331 332 1.448893 CGAAATTCGGCCGGGAGAA 60.449 57.895 27.83 12.99 36.00 2.87
332 333 1.429148 CGAAATTCGGCCGGGAGAAG 61.429 60.000 27.83 9.74 36.00 2.85
333 334 0.107848 GAAATTCGGCCGGGAGAAGA 60.108 55.000 27.83 0.00 0.00 2.87
334 335 0.546598 AAATTCGGCCGGGAGAAGAT 59.453 50.000 27.83 2.36 0.00 2.40
335 336 0.179045 AATTCGGCCGGGAGAAGATG 60.179 55.000 27.83 0.00 0.00 2.90
336 337 1.338136 ATTCGGCCGGGAGAAGATGT 61.338 55.000 27.83 0.00 0.00 3.06
337 338 1.550130 TTCGGCCGGGAGAAGATGTT 61.550 55.000 27.83 0.00 0.00 2.71
338 339 1.815421 CGGCCGGGAGAAGATGTTG 60.815 63.158 20.10 0.00 0.00 3.33
339 340 1.452108 GGCCGGGAGAAGATGTTGG 60.452 63.158 2.18 0.00 0.00 3.77
340 341 1.299976 GCCGGGAGAAGATGTTGGT 59.700 57.895 2.18 0.00 0.00 3.67
341 342 0.322546 GCCGGGAGAAGATGTTGGTT 60.323 55.000 2.18 0.00 0.00 3.67
342 343 1.739067 CCGGGAGAAGATGTTGGTTC 58.261 55.000 0.00 0.00 0.00 3.62
343 344 1.359848 CGGGAGAAGATGTTGGTTCG 58.640 55.000 0.00 0.00 0.00 3.95
344 345 1.067142 CGGGAGAAGATGTTGGTTCGA 60.067 52.381 0.00 0.00 0.00 3.71
345 346 2.418746 CGGGAGAAGATGTTGGTTCGAT 60.419 50.000 0.00 0.00 0.00 3.59
346 347 2.939103 GGGAGAAGATGTTGGTTCGATG 59.061 50.000 0.00 0.00 0.00 3.84
347 348 3.369471 GGGAGAAGATGTTGGTTCGATGA 60.369 47.826 0.00 0.00 0.00 2.92
348 349 4.253685 GGAGAAGATGTTGGTTCGATGAA 58.746 43.478 0.00 0.00 0.00 2.57
349 350 4.093556 GGAGAAGATGTTGGTTCGATGAAC 59.906 45.833 1.09 1.09 41.32 3.18
350 351 4.641396 AGAAGATGTTGGTTCGATGAACA 58.359 39.130 11.39 6.81 43.54 3.18
351 352 4.692625 AGAAGATGTTGGTTCGATGAACAG 59.307 41.667 11.39 0.00 43.54 3.16
352 353 4.271696 AGATGTTGGTTCGATGAACAGA 57.728 40.909 11.39 0.00 43.54 3.41
353 354 4.248859 AGATGTTGGTTCGATGAACAGAG 58.751 43.478 11.39 0.00 43.54 3.35
354 355 2.143122 TGTTGGTTCGATGAACAGAGC 58.857 47.619 11.39 1.17 43.54 4.09
355 356 2.143122 GTTGGTTCGATGAACAGAGCA 58.857 47.619 11.39 0.00 43.54 4.26
356 357 2.542020 TGGTTCGATGAACAGAGCAA 57.458 45.000 11.39 0.00 43.54 3.91
357 358 2.844946 TGGTTCGATGAACAGAGCAAA 58.155 42.857 11.39 0.00 43.54 3.68
358 359 2.807967 TGGTTCGATGAACAGAGCAAAG 59.192 45.455 11.39 0.00 43.54 2.77
359 360 2.413371 GGTTCGATGAACAGAGCAAAGC 60.413 50.000 11.39 0.00 43.54 3.51
360 361 2.168326 TCGATGAACAGAGCAAAGCA 57.832 45.000 0.00 0.00 0.00 3.91
361 362 2.493035 TCGATGAACAGAGCAAAGCAA 58.507 42.857 0.00 0.00 0.00 3.91
362 363 2.877786 TCGATGAACAGAGCAAAGCAAA 59.122 40.909 0.00 0.00 0.00 3.68
363 364 3.058708 TCGATGAACAGAGCAAAGCAAAG 60.059 43.478 0.00 0.00 0.00 2.77
364 365 2.497107 TGAACAGAGCAAAGCAAAGC 57.503 45.000 0.00 0.00 0.00 3.51
365 366 1.750206 TGAACAGAGCAAAGCAAAGCA 59.250 42.857 0.00 0.00 0.00 3.91
366 367 2.166050 TGAACAGAGCAAAGCAAAGCAA 59.834 40.909 0.00 0.00 0.00 3.91
367 368 2.965572 ACAGAGCAAAGCAAAGCAAA 57.034 40.000 0.00 0.00 0.00 3.68
368 369 2.817901 ACAGAGCAAAGCAAAGCAAAG 58.182 42.857 0.00 0.00 0.00 2.77
369 370 1.525619 CAGAGCAAAGCAAAGCAAAGC 59.474 47.619 0.00 0.00 0.00 3.51
370 371 1.137479 AGAGCAAAGCAAAGCAAAGCA 59.863 42.857 0.00 0.00 0.00 3.91
371 372 1.935199 GAGCAAAGCAAAGCAAAGCAA 59.065 42.857 0.00 0.00 0.00 3.91
372 373 2.352342 GAGCAAAGCAAAGCAAAGCAAA 59.648 40.909 0.00 0.00 0.00 3.68
373 374 2.353579 AGCAAAGCAAAGCAAAGCAAAG 59.646 40.909 0.00 0.00 0.00 2.77
374 375 2.711885 CAAAGCAAAGCAAAGCAAAGC 58.288 42.857 0.00 0.00 0.00 3.51
375 376 2.027003 AAGCAAAGCAAAGCAAAGCA 57.973 40.000 0.00 0.00 0.00 3.91
376 377 2.027003 AGCAAAGCAAAGCAAAGCAA 57.973 40.000 0.00 0.00 0.00 3.91
377 378 2.358015 AGCAAAGCAAAGCAAAGCAAA 58.642 38.095 0.00 0.00 0.00 3.68
378 379 2.946990 AGCAAAGCAAAGCAAAGCAAAT 59.053 36.364 0.00 0.00 0.00 2.32
379 380 3.040099 GCAAAGCAAAGCAAAGCAAATG 58.960 40.909 0.00 0.00 0.00 2.32
380 381 3.487879 GCAAAGCAAAGCAAAGCAAATGT 60.488 39.130 0.00 0.00 0.00 2.71
381 382 3.955771 AAGCAAAGCAAAGCAAATGTG 57.044 38.095 0.00 0.00 0.00 3.21
382 383 2.908916 AGCAAAGCAAAGCAAATGTGT 58.091 38.095 0.00 0.00 0.00 3.72
383 384 2.867975 AGCAAAGCAAAGCAAATGTGTC 59.132 40.909 0.00 0.00 0.00 3.67
384 385 2.032636 GCAAAGCAAAGCAAATGTGTCC 60.033 45.455 0.00 0.00 0.00 4.02
385 386 2.531522 AAGCAAAGCAAATGTGTCCC 57.468 45.000 0.00 0.00 0.00 4.46
386 387 0.314935 AGCAAAGCAAATGTGTCCCG 59.685 50.000 0.00 0.00 0.00 5.14
387 388 0.031994 GCAAAGCAAATGTGTCCCGT 59.968 50.000 0.00 0.00 0.00 5.28
388 389 1.930371 GCAAAGCAAATGTGTCCCGTC 60.930 52.381 0.00 0.00 0.00 4.79
389 390 1.336440 CAAAGCAAATGTGTCCCGTCA 59.664 47.619 0.00 0.00 0.00 4.35
390 391 0.951558 AAGCAAATGTGTCCCGTCAC 59.048 50.000 0.00 0.00 38.63 3.67
391 392 1.206578 GCAAATGTGTCCCGTCACG 59.793 57.895 0.00 0.00 40.74 4.35
392 393 1.206578 CAAATGTGTCCCGTCACGC 59.793 57.895 0.00 0.00 40.74 5.34
393 394 2.314647 AAATGTGTCCCGTCACGCG 61.315 57.895 3.53 3.53 40.74 6.01
394 395 2.981977 AAATGTGTCCCGTCACGCGT 62.982 55.000 5.58 5.58 40.74 6.01
395 396 4.934942 TGTGTCCCGTCACGCGTG 62.935 66.667 32.76 32.76 40.74 5.34
483 484 6.625081 GCTCGGGTCAAGCAATAAATAAAACT 60.625 38.462 0.00 0.00 39.61 2.66
484 485 7.222000 TCGGGTCAAGCAATAAATAAAACTT 57.778 32.000 0.00 0.00 0.00 2.66
564 565 1.477295 GGAGTAGCGGCAGTAGAAACT 59.523 52.381 1.45 0.00 35.91 2.66
615 622 2.438763 CTCAATTCTCATCTCCCCTGCT 59.561 50.000 0.00 0.00 0.00 4.24
664 671 2.362963 CCCAAAACCCTAGCCCCC 59.637 66.667 0.00 0.00 0.00 5.40
683 690 4.514577 CGGAAGCAGACCGCCGAT 62.515 66.667 0.00 0.00 46.29 4.18
1081 1191 1.452801 GGGACGGGAACAAGGACAA 59.547 57.895 0.00 0.00 0.00 3.18
1083 1193 0.605589 GGACGGGAACAAGGACAAGG 60.606 60.000 0.00 0.00 0.00 3.61
1155 1265 2.501610 GGTCGCTCAGGATCACCC 59.498 66.667 0.00 0.00 36.73 4.61
1343 1453 3.252284 CACCCCCTGGTCAGTGCT 61.252 66.667 0.00 0.00 45.57 4.40
1442 1554 5.360649 AATGGACTAAAAGAGCTCTACCC 57.639 43.478 18.59 12.00 0.00 3.69
1497 1612 7.039313 TCACTGCGTCATCAGTAATTACTAT 57.961 36.000 17.62 9.19 44.81 2.12
1502 1617 7.718525 TGCGTCATCAGTAATTACTATAACCA 58.281 34.615 17.62 10.48 34.13 3.67
1589 1705 2.760634 TGCACTTTCGAAGCTATCCA 57.239 45.000 9.02 0.00 0.00 3.41
1680 1796 4.194640 CAGAAGATGGGTTCATGGTACTG 58.805 47.826 0.00 0.00 32.98 2.74
1718 1834 4.082190 TCTGGAGAAAAGTGTAGGATGACG 60.082 45.833 0.00 0.00 0.00 4.35
1725 1841 1.001974 AGTGTAGGATGACGCTTGCAA 59.998 47.619 0.00 0.00 36.81 4.08
1909 2032 1.137872 AGGCTAAATCTCCTCACTGCG 59.862 52.381 0.00 0.00 0.00 5.18
2102 2236 0.960861 GTGAACCAGTAAGGCCAGCC 60.961 60.000 5.01 0.00 43.14 4.85
2262 2396 1.815003 AGACTTGTTTGCTGCCTATGC 59.185 47.619 0.00 0.00 38.26 3.14
2270 2404 4.335315 TGTTTGCTGCCTATGCTGTATTAC 59.665 41.667 0.00 0.00 38.57 1.89
2271 2405 4.422073 TTGCTGCCTATGCTGTATTACT 57.578 40.909 0.00 0.00 38.57 2.24
2282 2416 8.398665 CCTATGCTGTATTACTTTCCAACTTTC 58.601 37.037 0.00 0.00 0.00 2.62
2348 2483 4.697352 AGTTGACATTGTTCCTGCTATCAC 59.303 41.667 0.00 0.00 0.00 3.06
2351 2486 4.696877 TGACATTGTTCCTGCTATCACTTG 59.303 41.667 0.00 0.00 0.00 3.16
2386 2521 7.417612 CACATAAGTTTTGTGCACTTAAGTCT 58.582 34.615 19.41 11.02 39.58 3.24
2584 2722 1.414919 TGTTTCCGTCTTACCTGCTGT 59.585 47.619 0.00 0.00 0.00 4.40
2621 2759 5.807011 GCCACAAATCCAGTGAATTATGTTC 59.193 40.000 0.00 0.00 39.30 3.18
3075 3214 8.414003 GGTTCCTACTTGAAAGAACTTTTCAAT 58.586 33.333 13.53 8.24 44.41 2.57
3131 3270 2.793278 ATTTTGTCGGTCTTTGTGCC 57.207 45.000 0.00 0.00 0.00 5.01
3167 3306 2.106511 TCCTCACTTGTTCTTGGGGAAG 59.893 50.000 0.00 0.00 39.59 3.46
3185 3324 0.478507 AGTAGGTAATGCATGGGGCC 59.521 55.000 0.00 0.00 43.89 5.80
3337 3476 4.985538 TGCATTCTCCTTTGAAACCTACT 58.014 39.130 0.00 0.00 0.00 2.57
3418 3557 3.067684 AGGGTTTTACAGATGGAACGG 57.932 47.619 0.00 0.00 0.00 4.44
3519 3658 9.905713 TTTTTAGATATACTCATGCTGACCTTT 57.094 29.630 0.00 0.00 0.00 3.11
3557 3696 6.377327 TGAGATTTGTTTCTCACCAAAGTC 57.623 37.500 0.17 0.00 45.49 3.01
3559 3698 6.038603 TGAGATTTGTTTCTCACCAAAGTCAG 59.961 38.462 0.17 0.00 45.49 3.51
3565 3704 5.592282 TGTTTCTCACCAAAGTCAGCATTTA 59.408 36.000 0.00 0.00 0.00 1.40
3627 3766 7.224362 CCACTCTCTGATGAAATGATCAAGTAC 59.776 40.741 0.00 0.00 42.54 2.73
3685 3824 1.978617 ATTGTTCTTGCCCCCGCTG 60.979 57.895 0.00 0.00 35.36 5.18
3699 3838 1.398390 CCCGCTGCTATTTCTGTCAAC 59.602 52.381 0.00 0.00 0.00 3.18
3700 3839 2.350522 CCGCTGCTATTTCTGTCAACT 58.649 47.619 0.00 0.00 0.00 3.16
3874 4022 6.107901 TCCTTTTGGTTTTGATTGGTATGG 57.892 37.500 0.00 0.00 41.38 2.74
4060 4208 4.890088 ACGTATAGCCACTTTTGACTGAA 58.110 39.130 0.00 0.00 0.00 3.02
4198 4346 3.117398 ACCTCCACATATACGGGTCTGTA 60.117 47.826 0.00 0.00 0.00 2.74
4220 4368 9.587772 CTGTATGCTGTTACTTCAATTACTACT 57.412 33.333 0.00 0.00 0.00 2.57
4441 4593 7.466746 AGTAACATATGATGTGGCACTTTTT 57.533 32.000 19.83 6.77 44.07 1.94
4518 4693 7.079182 TGGCGTTATTTCATTACTTTCGATT 57.921 32.000 0.00 0.00 0.00 3.34
4538 4713 6.093495 TCGATTATTTTGACTCCGAAAAGCAT 59.907 34.615 0.00 0.00 0.00 3.79
4539 4714 7.279090 TCGATTATTTTGACTCCGAAAAGCATA 59.721 33.333 0.00 0.00 0.00 3.14
4774 4964 3.784338 ACTTGATGTGTTGTTTTGGCTG 58.216 40.909 0.00 0.00 0.00 4.85
4778 4968 2.937469 TGTGTTGTTTTGGCTGACTG 57.063 45.000 0.00 0.00 0.00 3.51
4976 5168 2.483013 CGACTTGGTGAGGTCAGTTTGA 60.483 50.000 0.00 0.00 33.19 2.69
5054 5254 4.642429 AGCACTGGTGTTTAAGGACTTAG 58.358 43.478 2.64 0.00 0.00 2.18
5117 5317 3.963428 ATACTGGACACTGGTGAAGTC 57.037 47.619 7.78 0.00 36.83 3.01
5134 5334 3.356529 AGTCATCGAAATGGCTCCTTT 57.643 42.857 0.00 0.00 44.61 3.11
5164 5364 6.528537 TGATAATGTTGGGATCAGTTTTGG 57.471 37.500 0.00 0.00 0.00 3.28
5167 5367 2.226330 TGTTGGGATCAGTTTTGGTCG 58.774 47.619 0.00 0.00 35.16 4.79
5317 5517 9.872684 AACCATACCATCATCTGAAAATAAGAT 57.127 29.630 0.00 0.00 34.66 2.40
5343 5543 1.202627 GGAGCTTATCAGGCCTGACTG 60.203 57.143 37.39 27.56 43.11 3.51
5361 5561 5.139727 TGACTGGACAATCAAACAAGGAAT 58.860 37.500 0.00 0.00 0.00 3.01
5387 5587 4.454678 TGAGCAATAATAAGCAGGTGAGG 58.545 43.478 0.00 0.00 0.00 3.86
5489 5689 6.672266 TGTTCAAGAACTGAAGAGACCTAT 57.328 37.500 13.49 0.00 44.83 2.57
5724 5960 6.966021 TCTGCCTGTAGTTTTTGTTGATTAC 58.034 36.000 0.00 0.00 0.00 1.89
5725 5961 6.770785 TCTGCCTGTAGTTTTTGTTGATTACT 59.229 34.615 0.00 0.00 0.00 2.24
5726 5962 6.734137 TGCCTGTAGTTTTTGTTGATTACTG 58.266 36.000 0.00 0.00 0.00 2.74
5727 5963 6.544197 TGCCTGTAGTTTTTGTTGATTACTGA 59.456 34.615 0.00 0.00 0.00 3.41
5728 5964 7.230510 TGCCTGTAGTTTTTGTTGATTACTGAT 59.769 33.333 0.00 0.00 0.00 2.90
5729 5965 8.082242 GCCTGTAGTTTTTGTTGATTACTGATT 58.918 33.333 0.00 0.00 0.00 2.57
5845 6081 6.040729 TCCTTTCATTTTTGCTCAACTCATCA 59.959 34.615 0.00 0.00 0.00 3.07
5848 6084 8.665643 TTTCATTTTTGCTCAACTCATCAAAT 57.334 26.923 0.00 0.00 0.00 2.32
5893 6129 9.880157 CACCATTCCTTTCATTGATTTCTTATT 57.120 29.630 0.00 0.00 0.00 1.40
5927 6163 9.585099 TCACAAATTTATATTTTCCATCTGTGC 57.415 29.630 0.00 0.00 31.63 4.57
5933 6169 1.896220 TTTTCCATCTGTGCTTCGCT 58.104 45.000 0.00 0.00 0.00 4.93
5939 6175 0.604780 ATCTGTGCTTCGCTGCAAGT 60.605 50.000 0.00 0.00 45.12 3.16
5957 6193 4.889995 GCAAGTATTTTATCTTCCCCTGCT 59.110 41.667 0.00 0.00 0.00 4.24
5966 6202 2.376109 TCTTCCCCTGCTAGTAACTCG 58.624 52.381 0.00 0.00 0.00 4.18
6140 6376 0.548989 ATTACGGGCATGGCTACCAA 59.451 50.000 19.78 8.66 36.95 3.67
6143 6379 1.898574 CGGGCATGGCTACCAATCC 60.899 63.158 19.78 0.00 36.95 3.01
6152 6388 4.534647 TGGCTACCAATCCATAAACCAT 57.465 40.909 0.00 0.00 0.00 3.55
6158 6394 3.891366 ACCAATCCATAAACCATAGCAGC 59.109 43.478 0.00 0.00 0.00 5.25
6201 6437 3.581332 CGCTAGAAATAATGGAGGGGGTA 59.419 47.826 0.00 0.00 0.00 3.69
6242 6478 2.951642 CCAGGACTTGAAGAAGCAACAA 59.048 45.455 0.00 0.00 31.68 2.83
6243 6479 3.243201 CCAGGACTTGAAGAAGCAACAAC 60.243 47.826 0.00 0.00 31.68 3.32
6244 6480 3.378112 CAGGACTTGAAGAAGCAACAACA 59.622 43.478 0.00 0.00 31.68 3.33
6420 6702 3.173599 CGCTGGACATAGCATTTGTTTG 58.826 45.455 0.00 0.00 43.87 2.93
6463 6745 1.002468 GTGTGCTGTCATGTGGTGAAC 60.002 52.381 0.00 0.00 38.90 3.18
6467 6749 1.527034 CTGTCATGTGGTGAACTGGG 58.473 55.000 0.00 0.00 38.90 4.45
6592 6874 8.250332 AGCAAAGACTTGAAGACAAAAACATTA 58.750 29.630 0.00 0.00 35.49 1.90
6756 7115 2.037772 GCTTCTCTGAGTGGACCAAAGA 59.962 50.000 4.32 0.00 0.00 2.52
6764 7123 5.483937 TCTGAGTGGACCAAAGATAGCTTAA 59.516 40.000 0.00 0.00 32.98 1.85
6873 7233 8.616598 CCAGGGGGTGGTATGTATATTTATTTA 58.383 37.037 0.00 0.00 42.17 1.40
7235 7595 1.611491 TCGGATGTATCTATGTGCGCA 59.389 47.619 5.66 5.66 0.00 6.09
7402 7793 4.690748 GCAAAGAATTTAACCTTTGGAGGC 59.309 41.667 18.21 7.09 45.53 4.70
7470 7861 3.118738 CCTAGGAATTGAGCCTTGTACGT 60.119 47.826 1.05 0.00 36.96 3.57
7479 7870 1.588082 CCTTGTACGTAGTGGCCGT 59.412 57.895 0.00 0.00 45.73 5.68
7517 7908 0.807275 CGCGTGCTTCCAGATGATGA 60.807 55.000 0.00 0.00 0.00 2.92
7551 7942 2.877168 GCTCATGAAGGTGGACATCATC 59.123 50.000 0.00 0.00 31.65 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.726351 CCGAGCTCAACTCTCCCCC 61.726 68.421 15.40 0.00 43.85 5.40
12 13 1.985116 ACCGAGCTCAACTCTCCCC 60.985 63.158 15.40 0.00 43.85 4.81
13 14 1.216710 CACCGAGCTCAACTCTCCC 59.783 63.158 15.40 0.00 43.85 4.30
14 15 1.216710 CCACCGAGCTCAACTCTCC 59.783 63.158 15.40 0.00 43.85 3.71
15 16 0.172352 CTCCACCGAGCTCAACTCTC 59.828 60.000 15.40 0.00 43.85 3.20
16 17 0.251386 TCTCCACCGAGCTCAACTCT 60.251 55.000 15.40 0.00 43.85 3.24
17 18 0.172352 CTCTCCACCGAGCTCAACTC 59.828 60.000 15.40 0.00 42.47 3.01
18 19 1.254284 CCTCTCCACCGAGCTCAACT 61.254 60.000 15.40 0.00 35.94 3.16
19 20 1.216710 CCTCTCCACCGAGCTCAAC 59.783 63.158 15.40 0.00 35.94 3.18
20 21 1.228894 ACCTCTCCACCGAGCTCAA 60.229 57.895 15.40 0.00 35.94 3.02
21 22 1.979155 CACCTCTCCACCGAGCTCA 60.979 63.158 15.40 0.00 35.94 4.26
22 23 1.040339 ATCACCTCTCCACCGAGCTC 61.040 60.000 2.73 2.73 35.94 4.09
23 24 1.000993 ATCACCTCTCCACCGAGCT 59.999 57.895 0.00 0.00 35.94 4.09
24 25 1.142748 CATCACCTCTCCACCGAGC 59.857 63.158 0.00 0.00 35.94 5.03
25 26 0.174389 CACATCACCTCTCCACCGAG 59.826 60.000 0.00 0.00 37.48 4.63
26 27 1.257750 CCACATCACCTCTCCACCGA 61.258 60.000 0.00 0.00 0.00 4.69
27 28 1.219124 CCACATCACCTCTCCACCG 59.781 63.158 0.00 0.00 0.00 4.94
28 29 1.604378 CCCACATCACCTCTCCACC 59.396 63.158 0.00 0.00 0.00 4.61
29 30 1.078143 GCCCACATCACCTCTCCAC 60.078 63.158 0.00 0.00 0.00 4.02
30 31 1.229625 AGCCCACATCACCTCTCCA 60.230 57.895 0.00 0.00 0.00 3.86
31 32 1.222936 CAGCCCACATCACCTCTCC 59.777 63.158 0.00 0.00 0.00 3.71
32 33 0.615331 TTCAGCCCACATCACCTCTC 59.385 55.000 0.00 0.00 0.00 3.20
33 34 1.064906 CATTCAGCCCACATCACCTCT 60.065 52.381 0.00 0.00 0.00 3.69
34 35 1.065199 TCATTCAGCCCACATCACCTC 60.065 52.381 0.00 0.00 0.00 3.85
35 36 0.994247 TCATTCAGCCCACATCACCT 59.006 50.000 0.00 0.00 0.00 4.00
36 37 1.340405 ACTCATTCAGCCCACATCACC 60.340 52.381 0.00 0.00 0.00 4.02
37 38 1.741706 CACTCATTCAGCCCACATCAC 59.258 52.381 0.00 0.00 0.00 3.06
38 39 1.340308 CCACTCATTCAGCCCACATCA 60.340 52.381 0.00 0.00 0.00 3.07
39 40 1.340405 ACCACTCATTCAGCCCACATC 60.340 52.381 0.00 0.00 0.00 3.06
40 41 0.700564 ACCACTCATTCAGCCCACAT 59.299 50.000 0.00 0.00 0.00 3.21
41 42 0.478072 AACCACTCATTCAGCCCACA 59.522 50.000 0.00 0.00 0.00 4.17
42 43 0.883833 CAACCACTCATTCAGCCCAC 59.116 55.000 0.00 0.00 0.00 4.61
43 44 0.770499 TCAACCACTCATTCAGCCCA 59.230 50.000 0.00 0.00 0.00 5.36
44 45 1.457346 CTCAACCACTCATTCAGCCC 58.543 55.000 0.00 0.00 0.00 5.19
45 46 1.003580 TCCTCAACCACTCATTCAGCC 59.996 52.381 0.00 0.00 0.00 4.85
46 47 2.354259 CTCCTCAACCACTCATTCAGC 58.646 52.381 0.00 0.00 0.00 4.26
47 48 2.568956 TCCTCCTCAACCACTCATTCAG 59.431 50.000 0.00 0.00 0.00 3.02
48 49 2.568956 CTCCTCCTCAACCACTCATTCA 59.431 50.000 0.00 0.00 0.00 2.57
49 50 2.093235 CCTCCTCCTCAACCACTCATTC 60.093 54.545 0.00 0.00 0.00 2.67
50 51 1.912043 CCTCCTCCTCAACCACTCATT 59.088 52.381 0.00 0.00 0.00 2.57
51 52 1.577736 CCTCCTCCTCAACCACTCAT 58.422 55.000 0.00 0.00 0.00 2.90
52 53 0.545309 CCCTCCTCCTCAACCACTCA 60.545 60.000 0.00 0.00 0.00 3.41
53 54 1.268283 CCCCTCCTCCTCAACCACTC 61.268 65.000 0.00 0.00 0.00 3.51
54 55 1.229658 CCCCTCCTCCTCAACCACT 60.230 63.158 0.00 0.00 0.00 4.00
55 56 0.840722 TTCCCCTCCTCCTCAACCAC 60.841 60.000 0.00 0.00 0.00 4.16
56 57 0.121197 ATTCCCCTCCTCCTCAACCA 59.879 55.000 0.00 0.00 0.00 3.67
57 58 2.191981 TATTCCCCTCCTCCTCAACC 57.808 55.000 0.00 0.00 0.00 3.77
58 59 3.716872 TGAATATTCCCCTCCTCCTCAAC 59.283 47.826 12.90 0.00 0.00 3.18
59 60 3.976654 CTGAATATTCCCCTCCTCCTCAA 59.023 47.826 12.90 0.00 0.00 3.02
60 61 3.591789 CTGAATATTCCCCTCCTCCTCA 58.408 50.000 12.90 0.00 0.00 3.86
61 62 2.304470 GCTGAATATTCCCCTCCTCCTC 59.696 54.545 12.90 0.00 0.00 3.71
62 63 2.343625 GCTGAATATTCCCCTCCTCCT 58.656 52.381 12.90 0.00 0.00 3.69
63 64 1.352687 GGCTGAATATTCCCCTCCTCC 59.647 57.143 12.90 0.63 0.00 4.30
64 65 1.352687 GGGCTGAATATTCCCCTCCTC 59.647 57.143 18.01 2.91 34.59 3.71
65 66 1.450360 GGGCTGAATATTCCCCTCCT 58.550 55.000 18.01 0.00 34.59 3.69
70 71 0.405973 GGGAGGGGCTGAATATTCCC 59.594 60.000 12.90 7.52 37.68 3.97
71 72 0.405973 GGGGAGGGGCTGAATATTCC 59.594 60.000 12.90 0.00 0.00 3.01
72 73 1.149101 TGGGGAGGGGCTGAATATTC 58.851 55.000 8.60 8.60 0.00 1.75
73 74 0.853530 GTGGGGAGGGGCTGAATATT 59.146 55.000 0.00 0.00 0.00 1.28
74 75 1.068352 GGTGGGGAGGGGCTGAATAT 61.068 60.000 0.00 0.00 0.00 1.28
75 76 1.696314 GGTGGGGAGGGGCTGAATA 60.696 63.158 0.00 0.00 0.00 1.75
76 77 3.023735 GGTGGGGAGGGGCTGAAT 61.024 66.667 0.00 0.00 0.00 2.57
77 78 2.424989 TAAGGTGGGGAGGGGCTGAA 62.425 60.000 0.00 0.00 0.00 3.02
78 79 2.208562 ATAAGGTGGGGAGGGGCTGA 62.209 60.000 0.00 0.00 0.00 4.26
79 80 1.697754 ATAAGGTGGGGAGGGGCTG 60.698 63.158 0.00 0.00 0.00 4.85
80 81 1.386057 GATAAGGTGGGGAGGGGCT 60.386 63.158 0.00 0.00 0.00 5.19
81 82 2.461739 GGATAAGGTGGGGAGGGGC 61.462 68.421 0.00 0.00 0.00 5.80
82 83 1.005556 TGGATAAGGTGGGGAGGGG 59.994 63.158 0.00 0.00 0.00 4.79
83 84 0.030092 TCTGGATAAGGTGGGGAGGG 60.030 60.000 0.00 0.00 0.00 4.30
84 85 1.490910 GTTCTGGATAAGGTGGGGAGG 59.509 57.143 0.00 0.00 0.00 4.30
85 86 2.092914 GTGTTCTGGATAAGGTGGGGAG 60.093 54.545 0.00 0.00 0.00 4.30
86 87 1.913419 GTGTTCTGGATAAGGTGGGGA 59.087 52.381 0.00 0.00 0.00 4.81
87 88 1.633432 TGTGTTCTGGATAAGGTGGGG 59.367 52.381 0.00 0.00 0.00 4.96
88 89 2.356125 CCTGTGTTCTGGATAAGGTGGG 60.356 54.545 0.00 0.00 35.11 4.61
89 90 2.571653 TCCTGTGTTCTGGATAAGGTGG 59.428 50.000 0.00 0.00 36.89 4.61
90 91 3.600388 GTCCTGTGTTCTGGATAAGGTG 58.400 50.000 0.00 0.00 42.18 4.00
91 92 2.572104 GGTCCTGTGTTCTGGATAAGGT 59.428 50.000 0.00 0.00 42.18 3.50
92 93 2.092914 GGGTCCTGTGTTCTGGATAAGG 60.093 54.545 0.00 0.00 42.18 2.69
93 94 2.840651 AGGGTCCTGTGTTCTGGATAAG 59.159 50.000 0.00 0.00 42.18 1.73
94 95 2.915869 AGGGTCCTGTGTTCTGGATAA 58.084 47.619 0.00 0.00 42.18 1.75
95 96 2.642171 AGGGTCCTGTGTTCTGGATA 57.358 50.000 0.00 0.00 42.18 2.59
96 97 2.188817 GTAGGGTCCTGTGTTCTGGAT 58.811 52.381 0.00 0.00 42.18 3.41
97 98 1.640917 GTAGGGTCCTGTGTTCTGGA 58.359 55.000 0.00 0.00 38.94 3.86
98 99 0.613777 GGTAGGGTCCTGTGTTCTGG 59.386 60.000 0.00 0.00 0.00 3.86
99 100 0.246635 CGGTAGGGTCCTGTGTTCTG 59.753 60.000 0.00 0.00 0.00 3.02
100 101 1.542187 GCGGTAGGGTCCTGTGTTCT 61.542 60.000 0.00 0.00 0.00 3.01
101 102 1.079336 GCGGTAGGGTCCTGTGTTC 60.079 63.158 0.00 0.00 0.00 3.18
102 103 2.590114 GGCGGTAGGGTCCTGTGTT 61.590 63.158 0.00 0.00 0.00 3.32
103 104 3.001406 GGCGGTAGGGTCCTGTGT 61.001 66.667 0.00 0.00 0.00 3.72
104 105 3.000819 TGGCGGTAGGGTCCTGTG 61.001 66.667 0.00 0.00 0.00 3.66
105 106 2.683933 CTGGCGGTAGGGTCCTGT 60.684 66.667 0.00 0.00 0.00 4.00
106 107 2.363795 TCTGGCGGTAGGGTCCTG 60.364 66.667 0.00 0.00 0.00 3.86
107 108 2.042843 CTCTGGCGGTAGGGTCCT 60.043 66.667 0.00 0.00 0.00 3.85
108 109 3.155167 CCTCTGGCGGTAGGGTCC 61.155 72.222 0.00 0.00 0.00 4.46
109 110 3.155167 CCCTCTGGCGGTAGGGTC 61.155 72.222 17.83 0.00 46.45 4.46
112 113 1.472662 CCATACCCTCTGGCGGTAGG 61.473 65.000 0.00 0.00 39.21 3.18
113 114 2.050269 CCATACCCTCTGGCGGTAG 58.950 63.158 0.00 0.00 39.21 3.18
114 115 4.288234 CCATACCCTCTGGCGGTA 57.712 61.111 0.00 0.00 40.12 4.02
119 120 1.472662 CCTACCGCCATACCCTCTGG 61.473 65.000 0.00 0.00 36.81 3.86
120 121 2.050269 CCTACCGCCATACCCTCTG 58.950 63.158 0.00 0.00 0.00 3.35
121 122 1.837499 GCCTACCGCCATACCCTCT 60.837 63.158 0.00 0.00 0.00 3.69
122 123 1.817911 GAGCCTACCGCCATACCCTC 61.818 65.000 0.00 0.00 38.78 4.30
123 124 1.837499 GAGCCTACCGCCATACCCT 60.837 63.158 0.00 0.00 38.78 4.34
124 125 2.741747 GAGCCTACCGCCATACCC 59.258 66.667 0.00 0.00 38.78 3.69
125 126 2.100879 CTGGAGCCTACCGCCATACC 62.101 65.000 0.00 0.00 42.82 2.73
126 127 1.367840 CTGGAGCCTACCGCCATAC 59.632 63.158 0.00 0.00 42.82 2.39
127 128 0.186630 TACTGGAGCCTACCGCCATA 59.813 55.000 0.00 0.00 42.82 2.74
128 129 0.689745 TTACTGGAGCCTACCGCCAT 60.690 55.000 0.00 0.00 42.82 4.40
129 130 1.305465 TTACTGGAGCCTACCGCCA 60.305 57.895 0.00 0.00 41.46 5.69
130 131 1.143401 GTTACTGGAGCCTACCGCC 59.857 63.158 0.00 0.00 38.78 6.13
131 132 1.226888 CGTTACTGGAGCCTACCGC 60.227 63.158 0.00 0.00 37.98 5.68
132 133 1.064654 GTACGTTACTGGAGCCTACCG 59.935 57.143 0.00 0.00 0.00 4.02
133 134 1.406898 GGTACGTTACTGGAGCCTACC 59.593 57.143 0.00 0.00 0.00 3.18
134 135 2.859526 GGTACGTTACTGGAGCCTAC 57.140 55.000 0.00 0.00 0.00 3.18
156 157 1.585006 CCTACCGCCATAGCCTACG 59.415 63.158 0.00 0.00 34.57 3.51
157 158 1.972978 CCCTACCGCCATAGCCTAC 59.027 63.158 0.00 0.00 34.57 3.18
158 159 1.911766 GCCCTACCGCCATAGCCTA 60.912 63.158 0.00 0.00 34.57 3.93
159 160 3.242291 GCCCTACCGCCATAGCCT 61.242 66.667 0.00 0.00 34.57 4.58
160 161 3.556306 TGCCCTACCGCCATAGCC 61.556 66.667 0.00 0.00 34.57 3.93
161 162 2.280865 GTGCCCTACCGCCATAGC 60.281 66.667 0.00 0.00 0.00 2.97
162 163 2.029073 CGTGCCCTACCGCCATAG 59.971 66.667 0.00 0.00 0.00 2.23
163 164 4.230002 GCGTGCCCTACCGCCATA 62.230 66.667 0.00 0.00 43.96 2.74
168 169 2.023414 TAGGATTGCGTGCCCTACCG 62.023 60.000 0.00 0.00 0.00 4.02
169 170 0.532196 GTAGGATTGCGTGCCCTACC 60.532 60.000 12.22 1.84 44.02 3.18
170 171 2.987752 GTAGGATTGCGTGCCCTAC 58.012 57.895 9.15 9.15 43.66 3.18
171 172 1.827394 GGTAGGATTGCGTGCCCTA 59.173 57.895 0.00 0.00 0.00 3.53
172 173 2.590092 GGTAGGATTGCGTGCCCT 59.410 61.111 0.00 0.00 0.00 5.19
173 174 2.895372 CGGTAGGATTGCGTGCCC 60.895 66.667 0.00 0.00 31.92 5.36
174 175 3.573491 GCGGTAGGATTGCGTGCC 61.573 66.667 0.00 0.00 0.00 5.01
175 176 3.573491 GGCGGTAGGATTGCGTGC 61.573 66.667 0.00 0.00 0.00 5.34
176 177 2.125310 TGGCGGTAGGATTGCGTG 60.125 61.111 0.00 0.00 0.00 5.34
177 178 2.186903 CTGGCGGTAGGATTGCGT 59.813 61.111 0.00 0.00 0.00 5.24
178 179 2.588877 CCTGGCGGTAGGATTGCG 60.589 66.667 0.00 0.00 40.42 4.85
179 180 2.902343 GCCTGGCGGTAGGATTGC 60.902 66.667 1.35 0.00 40.42 3.56
180 181 2.203209 GGCCTGGCGGTAGGATTG 60.203 66.667 13.40 0.00 40.42 2.67
181 182 3.489513 GGGCCTGGCGGTAGGATT 61.490 66.667 13.40 0.00 40.42 3.01
182 183 4.499116 AGGGCCTGGCGGTAGGAT 62.499 66.667 13.40 0.00 40.42 3.24
183 184 4.733725 AAGGGCCTGGCGGTAGGA 62.734 66.667 6.92 0.00 40.42 2.94
184 185 3.728373 AAAGGGCCTGGCGGTAGG 61.728 66.667 6.92 0.00 40.95 3.18
185 186 2.270874 ATCAAAGGGCCTGGCGGTAG 62.271 60.000 6.92 1.49 0.00 3.18
186 187 2.305607 ATCAAAGGGCCTGGCGGTA 61.306 57.895 6.92 0.00 0.00 4.02
187 188 3.661648 ATCAAAGGGCCTGGCGGT 61.662 61.111 6.92 0.00 0.00 5.68
188 189 3.142838 CATCAAAGGGCCTGGCGG 61.143 66.667 6.92 0.00 0.00 6.13
189 190 2.550699 TACCATCAAAGGGCCTGGCG 62.551 60.000 6.92 0.00 31.72 5.69
190 191 0.753111 CTACCATCAAAGGGCCTGGC 60.753 60.000 6.92 11.05 31.72 4.85
191 192 0.106519 CCTACCATCAAAGGGCCTGG 60.107 60.000 6.92 7.08 34.84 4.45
192 193 0.753111 GCCTACCATCAAAGGGCCTG 60.753 60.000 6.92 0.00 37.12 4.85
193 194 1.214305 TGCCTACCATCAAAGGGCCT 61.214 55.000 0.00 0.00 41.84 5.19
194 195 0.324275 TTGCCTACCATCAAAGGGCC 60.324 55.000 0.00 0.00 41.84 5.80
195 196 1.555967 TTTGCCTACCATCAAAGGGC 58.444 50.000 0.00 0.00 42.73 5.19
196 197 2.497273 CCTTTTGCCTACCATCAAAGGG 59.503 50.000 0.00 2.31 41.06 3.95
197 198 3.430453 TCCTTTTGCCTACCATCAAAGG 58.570 45.455 3.05 3.05 34.21 3.11
198 199 4.706476 TGATCCTTTTGCCTACCATCAAAG 59.294 41.667 0.00 0.00 34.21 2.77
199 200 4.671831 TGATCCTTTTGCCTACCATCAAA 58.328 39.130 0.00 0.00 0.00 2.69
200 201 4.018506 TCTGATCCTTTTGCCTACCATCAA 60.019 41.667 0.00 0.00 0.00 2.57
201 202 3.523157 TCTGATCCTTTTGCCTACCATCA 59.477 43.478 0.00 0.00 0.00 3.07
202 203 4.156455 TCTGATCCTTTTGCCTACCATC 57.844 45.455 0.00 0.00 0.00 3.51
203 204 4.446889 GGATCTGATCCTTTTGCCTACCAT 60.447 45.833 25.93 0.00 46.19 3.55
204 205 3.117888 GGATCTGATCCTTTTGCCTACCA 60.118 47.826 25.93 0.00 46.19 3.25
205 206 3.481453 GGATCTGATCCTTTTGCCTACC 58.519 50.000 25.93 0.00 46.19 3.18
230 231 6.437477 GGATCTAACCCCAGTTCAGAATTTTT 59.563 38.462 0.00 0.00 37.42 1.94
231 232 5.952347 GGATCTAACCCCAGTTCAGAATTTT 59.048 40.000 0.00 0.00 37.42 1.82
232 233 5.510430 GGATCTAACCCCAGTTCAGAATTT 58.490 41.667 0.00 0.00 37.42 1.82
233 234 4.079730 GGGATCTAACCCCAGTTCAGAATT 60.080 45.833 0.00 0.00 43.81 2.17
234 235 3.459969 GGGATCTAACCCCAGTTCAGAAT 59.540 47.826 0.00 0.00 43.81 2.40
235 236 2.844348 GGGATCTAACCCCAGTTCAGAA 59.156 50.000 0.00 0.00 43.81 3.02
236 237 2.478292 GGGATCTAACCCCAGTTCAGA 58.522 52.381 0.00 0.00 43.81 3.27
263 264 4.398319 GGGATCTGACCTCAGTTCAAAAA 58.602 43.478 13.10 0.00 41.90 1.94
264 265 3.557054 CGGGATCTGACCTCAGTTCAAAA 60.557 47.826 13.10 0.00 41.90 2.44
265 266 2.028112 CGGGATCTGACCTCAGTTCAAA 60.028 50.000 13.10 0.00 41.90 2.69
266 267 1.550524 CGGGATCTGACCTCAGTTCAA 59.449 52.381 13.10 0.00 41.90 2.69
267 268 1.186200 CGGGATCTGACCTCAGTTCA 58.814 55.000 13.10 0.00 41.90 3.18
268 269 1.475403 TCGGGATCTGACCTCAGTTC 58.525 55.000 2.25 3.89 44.12 3.01
269 270 1.938585 TTCGGGATCTGACCTCAGTT 58.061 50.000 2.25 0.00 44.12 3.16
270 271 1.938585 TTTCGGGATCTGACCTCAGT 58.061 50.000 2.25 0.00 44.12 3.41
271 272 3.133721 AGAATTTCGGGATCTGACCTCAG 59.866 47.826 0.00 0.00 45.08 3.35
272 273 3.107601 AGAATTTCGGGATCTGACCTCA 58.892 45.455 0.00 0.00 0.00 3.86
273 274 3.828875 AGAATTTCGGGATCTGACCTC 57.171 47.619 0.00 0.00 0.00 3.85
274 275 4.518249 GAAAGAATTTCGGGATCTGACCT 58.482 43.478 0.00 0.00 46.13 3.85
275 276 4.884458 GAAAGAATTTCGGGATCTGACC 57.116 45.455 0.00 0.00 46.13 4.02
287 288 8.511321 GTGTTTTGACCCTTTTTGAAAGAATTT 58.489 29.630 2.15 0.00 43.98 1.82
288 289 7.148490 CGTGTTTTGACCCTTTTTGAAAGAATT 60.148 33.333 2.15 0.00 0.00 2.17
289 290 6.312672 CGTGTTTTGACCCTTTTTGAAAGAAT 59.687 34.615 2.15 0.00 0.00 2.40
290 291 5.635700 CGTGTTTTGACCCTTTTTGAAAGAA 59.364 36.000 2.15 0.00 0.00 2.52
291 292 5.047943 TCGTGTTTTGACCCTTTTTGAAAGA 60.048 36.000 2.15 0.00 0.00 2.52
292 293 5.164954 TCGTGTTTTGACCCTTTTTGAAAG 58.835 37.500 0.00 0.00 0.00 2.62
293 294 5.135508 TCGTGTTTTGACCCTTTTTGAAA 57.864 34.783 0.00 0.00 0.00 2.69
294 295 4.785511 TCGTGTTTTGACCCTTTTTGAA 57.214 36.364 0.00 0.00 0.00 2.69
295 296 4.785511 TTCGTGTTTTGACCCTTTTTGA 57.214 36.364 0.00 0.00 0.00 2.69
296 297 6.415798 AATTTCGTGTTTTGACCCTTTTTG 57.584 33.333 0.00 0.00 0.00 2.44
297 298 5.289917 CGAATTTCGTGTTTTGACCCTTTTT 59.710 36.000 10.61 0.00 34.72 1.94
298 299 4.801516 CGAATTTCGTGTTTTGACCCTTTT 59.198 37.500 10.61 0.00 34.72 2.27
299 300 4.356289 CGAATTTCGTGTTTTGACCCTTT 58.644 39.130 10.61 0.00 34.72 3.11
300 301 3.243267 CCGAATTTCGTGTTTTGACCCTT 60.243 43.478 16.89 0.00 38.40 3.95
301 302 2.292292 CCGAATTTCGTGTTTTGACCCT 59.708 45.455 16.89 0.00 38.40 4.34
302 303 2.657184 CCGAATTTCGTGTTTTGACCC 58.343 47.619 16.89 0.00 38.40 4.46
303 304 2.048498 GCCGAATTTCGTGTTTTGACC 58.952 47.619 16.89 0.00 38.40 4.02
304 305 2.048498 GGCCGAATTTCGTGTTTTGAC 58.952 47.619 16.89 0.00 38.40 3.18
305 306 1.334239 CGGCCGAATTTCGTGTTTTGA 60.334 47.619 24.07 0.00 38.40 2.69
306 307 1.049251 CGGCCGAATTTCGTGTTTTG 58.951 50.000 24.07 2.55 38.40 2.44
307 308 0.039888 CCGGCCGAATTTCGTGTTTT 60.040 50.000 30.73 0.00 38.40 2.43
308 309 1.577421 CCGGCCGAATTTCGTGTTT 59.423 52.632 30.73 0.00 38.40 2.83
309 310 2.329614 CCCGGCCGAATTTCGTGTT 61.330 57.895 30.73 0.00 38.40 3.32
310 311 2.744709 CCCGGCCGAATTTCGTGT 60.745 61.111 30.73 0.00 38.40 4.49
311 312 2.435234 TCCCGGCCGAATTTCGTG 60.435 61.111 30.73 6.78 38.40 4.35
312 313 2.125269 CTCCCGGCCGAATTTCGT 60.125 61.111 30.73 0.00 38.40 3.85
313 314 1.429148 CTTCTCCCGGCCGAATTTCG 61.429 60.000 30.73 11.81 40.07 3.46
314 315 0.107848 TCTTCTCCCGGCCGAATTTC 60.108 55.000 30.73 0.00 0.00 2.17
315 316 0.546598 ATCTTCTCCCGGCCGAATTT 59.453 50.000 30.73 0.00 0.00 1.82
316 317 0.179045 CATCTTCTCCCGGCCGAATT 60.179 55.000 30.73 0.09 0.00 2.17
317 318 1.338136 ACATCTTCTCCCGGCCGAAT 61.338 55.000 30.73 5.10 0.00 3.34
318 319 1.550130 AACATCTTCTCCCGGCCGAA 61.550 55.000 30.73 12.32 0.00 4.30
319 320 1.987855 AACATCTTCTCCCGGCCGA 60.988 57.895 30.73 6.52 0.00 5.54
320 321 1.815421 CAACATCTTCTCCCGGCCG 60.815 63.158 21.04 21.04 0.00 6.13
321 322 1.452108 CCAACATCTTCTCCCGGCC 60.452 63.158 0.00 0.00 0.00 6.13
322 323 0.322546 AACCAACATCTTCTCCCGGC 60.323 55.000 0.00 0.00 0.00 6.13
323 324 1.739067 GAACCAACATCTTCTCCCGG 58.261 55.000 0.00 0.00 0.00 5.73
324 325 1.067142 TCGAACCAACATCTTCTCCCG 60.067 52.381 0.00 0.00 0.00 5.14
325 326 2.762535 TCGAACCAACATCTTCTCCC 57.237 50.000 0.00 0.00 0.00 4.30
326 327 3.861840 TCATCGAACCAACATCTTCTCC 58.138 45.455 0.00 0.00 0.00 3.71
327 328 4.690748 TGTTCATCGAACCAACATCTTCTC 59.309 41.667 4.51 0.00 41.35 2.87
328 329 4.641396 TGTTCATCGAACCAACATCTTCT 58.359 39.130 4.51 0.00 41.35 2.85
329 330 4.690748 TCTGTTCATCGAACCAACATCTTC 59.309 41.667 7.42 0.00 41.35 2.87
330 331 4.641396 TCTGTTCATCGAACCAACATCTT 58.359 39.130 7.42 0.00 41.35 2.40
331 332 4.248859 CTCTGTTCATCGAACCAACATCT 58.751 43.478 7.42 0.00 41.35 2.90
332 333 3.181516 GCTCTGTTCATCGAACCAACATC 60.182 47.826 7.42 0.00 41.35 3.06
333 334 2.744202 GCTCTGTTCATCGAACCAACAT 59.256 45.455 7.42 0.00 41.35 2.71
334 335 2.143122 GCTCTGTTCATCGAACCAACA 58.857 47.619 4.51 0.00 41.35 3.33
335 336 2.143122 TGCTCTGTTCATCGAACCAAC 58.857 47.619 4.51 0.00 41.35 3.77
336 337 2.542020 TGCTCTGTTCATCGAACCAA 57.458 45.000 4.51 0.00 41.35 3.67
337 338 2.542020 TTGCTCTGTTCATCGAACCA 57.458 45.000 4.51 0.00 41.35 3.67
338 339 2.413371 GCTTTGCTCTGTTCATCGAACC 60.413 50.000 4.51 0.00 41.35 3.62
339 340 2.224079 TGCTTTGCTCTGTTCATCGAAC 59.776 45.455 0.00 0.00 42.26 3.95
340 341 2.493035 TGCTTTGCTCTGTTCATCGAA 58.507 42.857 0.00 0.00 0.00 3.71
341 342 2.168326 TGCTTTGCTCTGTTCATCGA 57.832 45.000 0.00 0.00 0.00 3.59
342 343 2.975410 TTGCTTTGCTCTGTTCATCG 57.025 45.000 0.00 0.00 0.00 3.84
343 344 2.985139 GCTTTGCTTTGCTCTGTTCATC 59.015 45.455 0.00 0.00 0.00 2.92
344 345 2.363038 TGCTTTGCTTTGCTCTGTTCAT 59.637 40.909 0.00 0.00 0.00 2.57
345 346 1.750206 TGCTTTGCTTTGCTCTGTTCA 59.250 42.857 0.00 0.00 0.00 3.18
346 347 2.497107 TGCTTTGCTTTGCTCTGTTC 57.503 45.000 0.00 0.00 0.00 3.18
347 348 2.965572 TTGCTTTGCTTTGCTCTGTT 57.034 40.000 0.00 0.00 0.00 3.16
348 349 2.817901 CTTTGCTTTGCTTTGCTCTGT 58.182 42.857 0.00 0.00 0.00 3.41
349 350 1.525619 GCTTTGCTTTGCTTTGCTCTG 59.474 47.619 0.00 0.00 0.00 3.35
350 351 1.137479 TGCTTTGCTTTGCTTTGCTCT 59.863 42.857 0.00 0.00 0.00 4.09
351 352 1.574134 TGCTTTGCTTTGCTTTGCTC 58.426 45.000 0.00 0.00 0.00 4.26
352 353 2.027003 TTGCTTTGCTTTGCTTTGCT 57.973 40.000 0.00 0.00 0.00 3.91
353 354 2.711885 CTTTGCTTTGCTTTGCTTTGC 58.288 42.857 0.00 0.00 0.00 3.68
354 355 2.096174 TGCTTTGCTTTGCTTTGCTTTG 59.904 40.909 0.00 0.00 0.00 2.77
355 356 2.358015 TGCTTTGCTTTGCTTTGCTTT 58.642 38.095 0.00 0.00 0.00 3.51
356 357 2.027003 TGCTTTGCTTTGCTTTGCTT 57.973 40.000 0.00 0.00 0.00 3.91
357 358 2.027003 TTGCTTTGCTTTGCTTTGCT 57.973 40.000 0.00 0.00 0.00 3.91
358 359 2.828874 TTTGCTTTGCTTTGCTTTGC 57.171 40.000 0.00 0.00 0.00 3.68
359 360 4.032355 CACATTTGCTTTGCTTTGCTTTG 58.968 39.130 0.00 0.00 0.00 2.77
360 361 3.690628 ACACATTTGCTTTGCTTTGCTTT 59.309 34.783 0.00 0.00 0.00 3.51
361 362 3.272581 ACACATTTGCTTTGCTTTGCTT 58.727 36.364 0.00 0.00 0.00 3.91
362 363 2.867975 GACACATTTGCTTTGCTTTGCT 59.132 40.909 0.00 0.00 0.00 3.91
363 364 2.032636 GGACACATTTGCTTTGCTTTGC 60.033 45.455 0.00 0.00 0.00 3.68
364 365 2.545106 GGGACACATTTGCTTTGCTTTG 59.455 45.455 0.00 0.00 0.00 2.77
365 366 2.802774 CGGGACACATTTGCTTTGCTTT 60.803 45.455 0.00 0.00 0.00 3.51
366 367 1.269726 CGGGACACATTTGCTTTGCTT 60.270 47.619 0.00 0.00 0.00 3.91
367 368 0.314935 CGGGACACATTTGCTTTGCT 59.685 50.000 0.00 0.00 0.00 3.91
368 369 0.031994 ACGGGACACATTTGCTTTGC 59.968 50.000 0.00 0.00 0.00 3.68
369 370 1.336440 TGACGGGACACATTTGCTTTG 59.664 47.619 0.00 0.00 0.00 2.77
370 371 1.336755 GTGACGGGACACATTTGCTTT 59.663 47.619 0.00 0.00 40.11 3.51
371 372 0.951558 GTGACGGGACACATTTGCTT 59.048 50.000 0.00 0.00 40.11 3.91
372 373 1.227999 CGTGACGGGACACATTTGCT 61.228 55.000 0.00 0.00 40.34 3.91
373 374 1.206578 CGTGACGGGACACATTTGC 59.793 57.895 0.00 0.00 40.34 3.68
374 375 1.206578 GCGTGACGGGACACATTTG 59.793 57.895 7.25 0.00 40.34 2.32
375 376 2.314647 CGCGTGACGGGACACATTT 61.315 57.895 17.47 0.00 42.31 2.32
376 377 2.736995 CGCGTGACGGGACACATT 60.737 61.111 17.47 0.00 42.31 2.71
583 584 0.725133 AGAATTGAGGGAGGGAGGGA 59.275 55.000 0.00 0.00 0.00 4.20
585 586 1.885049 TGAGAATTGAGGGAGGGAGG 58.115 55.000 0.00 0.00 0.00 4.30
667 674 1.591863 GTATCGGCGGTCTGCTTCC 60.592 63.158 7.21 0.00 45.43 3.46
668 675 1.591863 GGTATCGGCGGTCTGCTTC 60.592 63.158 7.21 0.00 45.43 3.86
669 676 2.499685 GGTATCGGCGGTCTGCTT 59.500 61.111 7.21 0.00 45.43 3.91
670 677 3.537874 GGGTATCGGCGGTCTGCT 61.538 66.667 7.21 0.00 45.43 4.24
671 678 4.603946 GGGGTATCGGCGGTCTGC 62.604 72.222 7.21 0.00 45.38 4.26
672 679 4.280494 CGGGGTATCGGCGGTCTG 62.280 72.222 7.21 0.00 0.00 3.51
712 719 2.329339 GATTGATTGCGGAGGCGC 59.671 61.111 0.00 0.00 44.10 6.53
1143 1253 2.914289 GCTGGGGGTGATCCTGAG 59.086 66.667 0.00 0.00 35.33 3.35
1191 1301 2.520968 GACCACCTTGGGCTTGGT 59.479 61.111 0.73 0.73 44.12 3.67
1332 1442 2.557920 AGGAAAGAAGCACTGACCAG 57.442 50.000 0.00 0.00 0.00 4.00
1343 1453 6.008960 AGAAAGAGGTAGTCGTAGGAAAGAA 58.991 40.000 0.00 0.00 0.00 2.52
1442 1554 8.182881 ACTACTACTAGTAAACAAATCTGAGCG 58.817 37.037 3.76 0.00 30.81 5.03
1527 1643 5.164620 AGGGCCACTAAAATTTCATTTGG 57.835 39.130 6.18 0.00 31.77 3.28
1529 1645 7.078249 AGAAAGGGCCACTAAAATTTCATTT 57.922 32.000 6.18 0.00 0.00 2.32
1538 1654 4.522789 GTGATCAAAGAAAGGGCCACTAAA 59.477 41.667 6.18 0.00 0.00 1.85
1542 1658 2.519013 AGTGATCAAAGAAAGGGCCAC 58.481 47.619 6.18 0.00 0.00 5.01
1669 1785 2.840038 AGAGACATGCCAGTACCATGAA 59.160 45.455 15.00 0.00 41.97 2.57
1680 1796 5.028549 TCTCCAGAATAAAGAGACATGCC 57.971 43.478 0.00 0.00 31.80 4.40
1718 1834 2.430465 TCCACTCTTCTGATTGCAAGC 58.570 47.619 7.99 7.99 0.00 4.01
1725 1841 4.813161 CGTATGCATTTCCACTCTTCTGAT 59.187 41.667 3.54 0.00 0.00 2.90
1909 2032 3.343941 TTATGTGGTACAGGTTGCTCC 57.656 47.619 0.00 0.00 41.80 4.70
2102 2236 1.233019 ACGGGGTATCGTCTACATCG 58.767 55.000 0.00 0.00 39.34 3.84
2379 2514 8.462811 TGTTGACAAAATTACTGCAAGACTTAA 58.537 29.630 0.00 0.00 37.43 1.85
2428 2563 7.739825 ACAGCTACCATATGACAATAACTCAT 58.260 34.615 3.65 0.00 32.91 2.90
2497 2632 5.542779 AGCACAGTCTAAGACTTTTACCAG 58.457 41.667 0.00 0.00 41.37 4.00
2584 2722 2.655090 TTGTGGCTGGAGTTTGATGA 57.345 45.000 0.00 0.00 0.00 2.92
2833 2972 3.711190 AGAAAGGCACAAATGGGTTCTTT 59.289 39.130 6.06 6.06 0.00 2.52
3075 3214 4.453480 AACCTTTCTCTTGGTTGGATCA 57.547 40.909 0.00 0.00 44.02 2.92
3115 3254 4.150994 GGGCACAAAGACCGACAA 57.849 55.556 0.00 0.00 34.00 3.18
3131 3270 8.581253 ACAAGTGAGGAAAAGGATATTAAAGG 57.419 34.615 0.00 0.00 0.00 3.11
3167 3306 0.889186 CGGCCCCATGCATTACCTAC 60.889 60.000 0.00 0.00 43.89 3.18
3185 3324 3.859961 GGAGCCACATTATATCACGATCG 59.140 47.826 14.88 14.88 0.00 3.69
3224 3363 5.976534 TGTGTCAAAAAGATTGCACACATAC 59.023 36.000 15.76 0.00 36.51 2.39
3271 3410 9.784531 AGTCACAATCAAGAATTATGGTATAGG 57.215 33.333 0.00 0.00 0.00 2.57
3418 3557 5.974108 TGTAATAGGTGTTCTAGGCTGTTC 58.026 41.667 0.00 0.00 0.00 3.18
3548 3687 5.186996 ACAAGTAAATGCTGACTTTGGTG 57.813 39.130 0.00 0.00 33.60 4.17
3559 3698 9.734620 TGCATTTTGATATCTACAAGTAAATGC 57.265 29.630 17.58 17.58 42.63 3.56
3565 3704 8.627403 CCAATCTGCATTTTGATATCTACAAGT 58.373 33.333 3.98 0.00 0.00 3.16
3676 3815 2.189499 CAGAAATAGCAGCGGGGGC 61.189 63.158 0.00 0.00 0.00 5.80
3685 3824 8.677300 TCAAATGGATAAGTTGACAGAAATAGC 58.323 33.333 0.00 0.00 0.00 2.97
3699 3838 7.337942 GCATAGGGGTAATCTCAAATGGATAAG 59.662 40.741 0.00 0.00 0.00 1.73
3700 3839 7.175104 GCATAGGGGTAATCTCAAATGGATAA 58.825 38.462 0.00 0.00 0.00 1.75
3874 4022 7.024340 ACAGTGCTCATTCATATGAATTCAC 57.976 36.000 27.54 27.54 42.41 3.18
4060 4208 5.564550 AGAATGCCTGTTCTGATACACTTT 58.435 37.500 0.00 0.00 37.08 2.66
4198 4346 9.155975 CAAGAGTAGTAATTGAAGTAACAGCAT 57.844 33.333 0.00 0.00 0.00 3.79
4220 4368 9.429109 AAGTTTTCCCTTAAAGATAAACCAAGA 57.571 29.630 0.00 0.00 0.00 3.02
4584 4763 7.254727 GGTCATGCAATTGAATAACTCTCTCTC 60.255 40.741 10.34 0.00 0.00 3.20
5015 5207 5.417811 CAGTGCTAAACTCATCATCAGTCT 58.582 41.667 0.00 0.00 36.83 3.24
5069 5269 8.846943 TTTTCAAGTCTAACTGCATAAGATCA 57.153 30.769 0.00 0.00 0.00 2.92
5076 5276 9.155975 CAGTATACTTTTCAAGTCTAACTGCAT 57.844 33.333 1.56 0.00 41.77 3.96
5117 5317 2.368439 TCCAAAGGAGCCATTTCGATG 58.632 47.619 0.00 0.00 0.00 3.84
5134 5334 3.949586 TCCCAACATTATCAGCATCCA 57.050 42.857 0.00 0.00 0.00 3.41
5164 5364 6.644592 AGCTAAAGAATATTGATCAGCTCGAC 59.355 38.462 0.00 0.00 32.93 4.20
5317 5517 1.210478 GGCCTGATAAGCTCCAAGACA 59.790 52.381 0.00 0.00 0.00 3.41
5343 5543 6.690530 TCATCAATTCCTTGTTTGATTGTCC 58.309 36.000 0.00 0.00 39.84 4.02
5361 5561 6.121590 TCACCTGCTTATTATTGCTCATCAA 58.878 36.000 0.00 0.00 39.32 2.57
5387 5587 4.023963 TGACTGCAGATACTACGAGTATGC 60.024 45.833 23.35 10.87 41.21 3.14
5443 5643 0.607489 GCCTGTGTCTCCTGCACAAT 60.607 55.000 0.00 0.00 44.86 2.71
5501 5701 4.095483 CAGATGTTGAATTGCCTACCAGAC 59.905 45.833 0.00 0.00 0.00 3.51
5636 5837 6.421801 GCAGTGCAAAAGAAAACAATACATCT 59.578 34.615 11.09 0.00 0.00 2.90
5691 5927 8.474831 ACAAAAACTACAGGCAGAAAAATAAGT 58.525 29.630 0.00 0.00 0.00 2.24
5845 6081 8.902806 TGGTGAATCGAGCATATTAAGAAATTT 58.097 29.630 0.00 0.00 0.00 1.82
5848 6084 8.450578 AATGGTGAATCGAGCATATTAAGAAA 57.549 30.769 0.00 0.00 32.89 2.52
5927 6163 6.195165 GGAAGATAAAATACTTGCAGCGAAG 58.805 40.000 0.00 3.77 35.22 3.79
5933 6169 4.644685 GCAGGGGAAGATAAAATACTTGCA 59.355 41.667 0.00 0.00 36.46 4.08
5939 6175 8.562949 AGTTACTAGCAGGGGAAGATAAAATA 57.437 34.615 0.00 0.00 0.00 1.40
5957 6193 4.990426 GCCACAACTTAAACCGAGTTACTA 59.010 41.667 0.00 0.00 35.68 1.82
5966 6202 1.268352 TGCGATGCCACAACTTAAACC 59.732 47.619 0.00 0.00 0.00 3.27
6000 6236 5.991861 AGCTGAAGACTGAATCTGATCAAT 58.008 37.500 0.00 0.00 37.88 2.57
6140 6376 4.139786 CTGTGCTGCTATGGTTTATGGAT 58.860 43.478 0.00 0.00 0.00 3.41
6143 6379 3.544684 TCCTGTGCTGCTATGGTTTATG 58.455 45.455 0.00 0.00 0.00 1.90
6152 6388 0.321671 GACCTGTTCCTGTGCTGCTA 59.678 55.000 0.00 0.00 0.00 3.49
6158 6394 1.302832 GGGCTGACCTGTTCCTGTG 60.303 63.158 0.00 0.00 35.85 3.66
6201 6437 3.600617 TGGAAACCCCCTCCATTATTTCT 59.399 43.478 0.00 0.00 38.07 2.52
6242 6478 1.562672 CCGAATGAGGGGGAGGTTGT 61.563 60.000 0.00 0.00 0.00 3.32
6243 6479 1.224592 CCGAATGAGGGGGAGGTTG 59.775 63.158 0.00 0.00 0.00 3.77
6244 6480 3.741325 CCGAATGAGGGGGAGGTT 58.259 61.111 0.00 0.00 0.00 3.50
6420 6702 6.257411 CACATGTCTTCCATCTACTGTCAATC 59.743 42.308 0.00 0.00 0.00 2.67
6463 6745 4.213270 CACTTGTTACATACACACACCCAG 59.787 45.833 0.00 0.00 36.21 4.45
6467 6749 5.977171 TGTCACTTGTTACATACACACAC 57.023 39.130 0.00 0.00 36.21 3.82
6592 6874 9.772973 AAGAAAAAGGTAACACAAAAGAAAAGT 57.227 25.926 0.00 0.00 41.41 2.66
6608 6890 6.177610 TGCGAGGTATGATAAAGAAAAAGGT 58.822 36.000 0.00 0.00 0.00 3.50
6616 6910 7.278868 ACTTCTCTTTTGCGAGGTATGATAAAG 59.721 37.037 0.00 0.00 0.00 1.85
6662 6961 1.585521 CAACTACTCCTACGCGCCG 60.586 63.158 5.73 0.00 0.00 6.46
6742 7099 5.755409 TTAAGCTATCTTTGGTCCACTCA 57.245 39.130 0.00 0.00 33.85 3.41
6868 7228 9.796120 CTTATGCCTCCGTTTTGAAAATAAATA 57.204 29.630 0.00 0.00 0.00 1.40
6869 7229 8.527810 TCTTATGCCTCCGTTTTGAAAATAAAT 58.472 29.630 0.00 0.00 0.00 1.40
6873 7233 5.975693 TCTTATGCCTCCGTTTTGAAAAT 57.024 34.783 0.00 0.00 0.00 1.82
7235 7595 2.909006 TCTCATTGAGAGGCTTGGTCTT 59.091 45.455 12.38 0.00 44.81 3.01
7402 7793 2.573340 GTTTGGAAGGCATGGGCG 59.427 61.111 0.00 0.00 42.47 6.13
7470 7861 1.024271 GGTATACACGACGGCCACTA 58.976 55.000 2.24 0.00 0.00 2.74
7479 7870 0.732571 GAACGACGGGGTATACACGA 59.267 55.000 21.22 0.00 0.00 4.35
7517 7908 4.818546 CCTTCATGAGCAAACCGAAGATAT 59.181 41.667 0.00 0.00 36.08 1.63
7551 7942 1.280133 TCACTCTTTGGATGCTCCTGG 59.720 52.381 4.21 0.00 37.46 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.