Multiple sequence alignment - TraesCS4B01G273000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G273000 chr4B 100.000 2915 0 0 1 2915 550524811 550521897 0.000000e+00 5384.0
1 TraesCS4B01G273000 chr4B 92.950 1078 65 6 746 1819 550592781 550591711 0.000000e+00 1559.0
2 TraesCS4B01G273000 chr4B 88.917 794 62 15 1036 1820 550677204 550676428 0.000000e+00 955.0
3 TraesCS4B01G273000 chr4D 88.066 2296 171 35 657 2913 442438786 442436555 0.000000e+00 2627.0
4 TraesCS4B01G273000 chr4D 84.393 1038 85 41 1041 2024 442443749 442442735 0.000000e+00 948.0
5 TraesCS4B01G273000 chr4D 76.000 150 28 6 489 633 101650887 101651033 1.450000e-08 71.3
6 TraesCS4B01G273000 chr4A 85.592 2103 204 47 27 2060 24905772 24907844 0.000000e+00 2113.0
7 TraesCS4B01G273000 chr4A 80.537 1192 129 68 795 1940 24903003 24904137 0.000000e+00 821.0
8 TraesCS4B01G273000 chr4A 100.000 31 0 0 2115 2145 527115039 527115009 1.130000e-04 58.4
9 TraesCS4B01G273000 chr6A 77.731 238 47 6 468 701 480305024 480305259 1.090000e-29 141.0
10 TraesCS4B01G273000 chr3B 77.885 208 39 7 469 672 24016141 24016345 3.940000e-24 122.0
11 TraesCS4B01G273000 chr5D 78.667 150 16 13 2117 2265 344402954 344403088 5.180000e-13 86.1
12 TraesCS4B01G273000 chr2D 75.936 187 30 9 2109 2295 477994507 477994336 6.700000e-12 82.4
13 TraesCS4B01G273000 chr7B 84.932 73 7 4 2113 2185 513297763 513297831 1.450000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G273000 chr4B 550521897 550524811 2914 True 5384.0 5384 100.0000 1 2915 1 chr4B.!!$R1 2914
1 TraesCS4B01G273000 chr4B 550591711 550592781 1070 True 1559.0 1559 92.9500 746 1819 1 chr4B.!!$R2 1073
2 TraesCS4B01G273000 chr4B 550676428 550677204 776 True 955.0 955 88.9170 1036 1820 1 chr4B.!!$R3 784
3 TraesCS4B01G273000 chr4D 442436555 442443749 7194 True 1787.5 2627 86.2295 657 2913 2 chr4D.!!$R1 2256
4 TraesCS4B01G273000 chr4A 24903003 24907844 4841 False 1467.0 2113 83.0645 27 2060 2 chr4A.!!$F1 2033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 570 0.036765 ATGCCTGCGGTAACTTCGAA 60.037 50.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2419 7575 0.178932 CCGGGGTGATAGATGGAGGA 60.179 60.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.468746 CACTTGGTTTTCTCTCATTAACCGA 59.531 40.000 0.00 0.00 42.29 4.69
26 27 5.477607 TGGTTTTCTCTCATTAACCGAGA 57.522 39.130 6.33 6.33 42.29 4.04
28 29 6.472887 TGGTTTTCTCTCATTAACCGAGAAT 58.527 36.000 11.47 0.00 41.73 2.40
30 31 6.371825 GGTTTTCTCTCATTAACCGAGAATGT 59.628 38.462 11.47 0.00 41.73 2.71
31 32 7.094762 GGTTTTCTCTCATTAACCGAGAATGTT 60.095 37.037 11.47 0.00 41.73 2.71
32 33 8.932791 GTTTTCTCTCATTAACCGAGAATGTTA 58.067 33.333 11.47 0.00 41.73 2.41
34 35 6.806751 TCTCTCATTAACCGAGAATGTTAGG 58.193 40.000 7.61 0.00 38.99 2.69
35 36 6.380274 TCTCTCATTAACCGAGAATGTTAGGT 59.620 38.462 7.61 0.00 38.99 3.08
37 38 7.391620 TCTCATTAACCGAGAATGTTAGGTTT 58.608 34.615 3.98 0.00 43.72 3.27
38 39 7.881232 TCTCATTAACCGAGAATGTTAGGTTTT 59.119 33.333 3.98 0.00 43.72 2.43
39 40 8.398878 TCATTAACCGAGAATGTTAGGTTTTT 57.601 30.769 3.98 0.00 43.72 1.94
40 41 8.293867 TCATTAACCGAGAATGTTAGGTTTTTG 58.706 33.333 3.98 3.58 43.72 2.44
41 42 7.804843 TTAACCGAGAATGTTAGGTTTTTGA 57.195 32.000 3.98 0.00 43.72 2.69
45 46 6.021596 CCGAGAATGTTAGGTTTTTGATTCG 58.978 40.000 0.00 0.00 0.00 3.34
46 47 6.021596 CGAGAATGTTAGGTTTTTGATTCGG 58.978 40.000 0.00 0.00 0.00 4.30
47 48 6.348213 CGAGAATGTTAGGTTTTTGATTCGGT 60.348 38.462 0.00 0.00 0.00 4.69
48 49 7.284919 AGAATGTTAGGTTTTTGATTCGGTT 57.715 32.000 0.00 0.00 0.00 4.44
49 50 7.722363 AGAATGTTAGGTTTTTGATTCGGTTT 58.278 30.769 0.00 0.00 0.00 3.27
50 51 8.201464 AGAATGTTAGGTTTTTGATTCGGTTTT 58.799 29.630 0.00 0.00 0.00 2.43
51 52 8.725405 AATGTTAGGTTTTTGATTCGGTTTTT 57.275 26.923 0.00 0.00 0.00 1.94
75 76 9.427821 TTTTCTTATAAGCTAGACCATCTCTCT 57.572 33.333 7.67 0.00 0.00 3.10
78 79 8.444783 TCTTATAAGCTAGACCATCTCTCTTCT 58.555 37.037 7.67 0.00 0.00 2.85
79 80 9.077885 CTTATAAGCTAGACCATCTCTCTTCTT 57.922 37.037 0.00 0.00 0.00 2.52
81 82 5.129368 AGCTAGACCATCTCTCTTCTTCT 57.871 43.478 0.00 0.00 0.00 2.85
82 83 5.518865 AGCTAGACCATCTCTCTTCTTCTT 58.481 41.667 0.00 0.00 0.00 2.52
83 84 6.668645 AGCTAGACCATCTCTCTTCTTCTTA 58.331 40.000 0.00 0.00 0.00 2.10
84 85 7.297614 AGCTAGACCATCTCTCTTCTTCTTAT 58.702 38.462 0.00 0.00 0.00 1.73
85 86 7.231317 AGCTAGACCATCTCTCTTCTTCTTATG 59.769 40.741 0.00 0.00 0.00 1.90
86 87 7.230510 GCTAGACCATCTCTCTTCTTCTTATGA 59.769 40.741 0.00 0.00 0.00 2.15
87 88 7.969690 AGACCATCTCTCTTCTTCTTATGAA 57.030 36.000 0.00 0.00 0.00 2.57
88 89 7.781056 AGACCATCTCTCTTCTTCTTATGAAC 58.219 38.462 0.00 0.00 0.00 3.18
89 90 7.619302 AGACCATCTCTCTTCTTCTTATGAACT 59.381 37.037 0.00 0.00 0.00 3.01
92 93 6.596309 TCTCTCTTCTTCTTATGAACTGCA 57.404 37.500 0.00 0.00 0.00 4.41
93 94 6.997655 TCTCTCTTCTTCTTATGAACTGCAA 58.002 36.000 0.00 0.00 0.00 4.08
95 96 7.933577 TCTCTCTTCTTCTTATGAACTGCAAAA 59.066 33.333 0.00 0.00 0.00 2.44
96 97 8.450578 TCTCTTCTTCTTATGAACTGCAAAAA 57.549 30.769 0.00 0.00 0.00 1.94
114 115 1.601166 AAAAACCTACCCTCGCACAC 58.399 50.000 0.00 0.00 0.00 3.82
117 118 2.151049 AACCTACCCTCGCACACGAC 62.151 60.000 0.00 0.00 45.12 4.34
118 119 2.341101 CCTACCCTCGCACACGACT 61.341 63.158 0.00 0.00 45.12 4.18
119 120 1.136984 CTACCCTCGCACACGACTC 59.863 63.158 0.00 0.00 45.12 3.36
120 121 1.303074 TACCCTCGCACACGACTCT 60.303 57.895 0.00 0.00 45.12 3.24
121 122 0.892358 TACCCTCGCACACGACTCTT 60.892 55.000 0.00 0.00 45.12 2.85
122 123 0.892358 ACCCTCGCACACGACTCTTA 60.892 55.000 0.00 0.00 45.12 2.10
123 124 0.242825 CCCTCGCACACGACTCTTAA 59.757 55.000 0.00 0.00 45.12 1.85
124 125 1.336517 CCCTCGCACACGACTCTTAAA 60.337 52.381 0.00 0.00 45.12 1.52
125 126 2.400399 CCTCGCACACGACTCTTAAAA 58.600 47.619 0.00 0.00 45.12 1.52
126 127 2.408704 CCTCGCACACGACTCTTAAAAG 59.591 50.000 0.00 0.00 45.12 2.27
129 130 2.033236 CGCACACGACTCTTAAAAGCAA 60.033 45.455 0.00 0.00 43.93 3.91
130 131 3.545228 CGCACACGACTCTTAAAAGCAAA 60.545 43.478 0.00 0.00 43.93 3.68
133 134 5.729454 GCACACGACTCTTAAAAGCAAAGAA 60.729 40.000 0.00 0.00 32.77 2.52
134 135 6.255215 CACACGACTCTTAAAAGCAAAGAAA 58.745 36.000 0.00 0.00 32.77 2.52
135 136 6.745450 CACACGACTCTTAAAAGCAAAGAAAA 59.255 34.615 0.00 0.00 32.77 2.29
136 137 6.745907 ACACGACTCTTAAAAGCAAAGAAAAC 59.254 34.615 0.00 0.00 32.77 2.43
137 138 6.967199 CACGACTCTTAAAAGCAAAGAAAACT 59.033 34.615 0.00 0.00 32.77 2.66
138 139 6.967199 ACGACTCTTAAAAGCAAAGAAAACTG 59.033 34.615 0.00 0.00 32.77 3.16
139 140 6.075362 CGACTCTTAAAAGCAAAGAAAACTGC 60.075 38.462 0.00 0.00 38.91 4.40
148 149 5.273944 AGCAAAGAAAACTGCTAAGAAACG 58.726 37.500 0.00 0.00 46.92 3.60
149 150 5.034797 GCAAAGAAAACTGCTAAGAAACGT 58.965 37.500 0.00 0.00 35.62 3.99
152 153 7.627340 CAAAGAAAACTGCTAAGAAACGTAGA 58.373 34.615 0.00 0.00 0.00 2.59
153 154 7.781548 AAGAAAACTGCTAAGAAACGTAGAA 57.218 32.000 0.00 0.00 0.00 2.10
155 156 8.205131 AGAAAACTGCTAAGAAACGTAGAAAA 57.795 30.769 0.00 0.00 0.00 2.29
156 157 8.671028 AGAAAACTGCTAAGAAACGTAGAAAAA 58.329 29.630 0.00 0.00 0.00 1.94
157 158 8.610855 AAAACTGCTAAGAAACGTAGAAAAAC 57.389 30.769 0.00 0.00 0.00 2.43
158 159 6.296365 ACTGCTAAGAAACGTAGAAAAACC 57.704 37.500 0.00 0.00 0.00 3.27
160 161 5.124645 TGCTAAGAAACGTAGAAAAACCCA 58.875 37.500 0.00 0.00 0.00 4.51
161 162 5.589452 TGCTAAGAAACGTAGAAAAACCCAA 59.411 36.000 0.00 0.00 0.00 4.12
162 163 6.095160 TGCTAAGAAACGTAGAAAAACCCAAA 59.905 34.615 0.00 0.00 0.00 3.28
163 164 6.974048 GCTAAGAAACGTAGAAAAACCCAAAA 59.026 34.615 0.00 0.00 0.00 2.44
164 165 7.488792 GCTAAGAAACGTAGAAAAACCCAAAAA 59.511 33.333 0.00 0.00 0.00 1.94
181 182 1.642728 AAAAACCGGCGAAACAAACC 58.357 45.000 9.30 0.00 0.00 3.27
183 184 0.531200 AAACCGGCGAAACAAACCAA 59.469 45.000 9.30 0.00 0.00 3.67
184 185 0.531200 AACCGGCGAAACAAACCAAA 59.469 45.000 9.30 0.00 0.00 3.28
185 186 0.101579 ACCGGCGAAACAAACCAAAG 59.898 50.000 9.30 0.00 0.00 2.77
186 187 0.382515 CCGGCGAAACAAACCAAAGA 59.617 50.000 9.30 0.00 0.00 2.52
188 189 2.531206 CGGCGAAACAAACCAAAGAAA 58.469 42.857 0.00 0.00 0.00 2.52
189 190 2.280445 CGGCGAAACAAACCAAAGAAAC 59.720 45.455 0.00 0.00 0.00 2.78
190 191 2.280445 GGCGAAACAAACCAAAGAAACG 59.720 45.455 0.00 0.00 0.00 3.60
191 192 3.172824 GCGAAACAAACCAAAGAAACGA 58.827 40.909 0.00 0.00 0.00 3.85
192 193 3.608939 GCGAAACAAACCAAAGAAACGAA 59.391 39.130 0.00 0.00 0.00 3.85
193 194 4.489682 GCGAAACAAACCAAAGAAACGAAC 60.490 41.667 0.00 0.00 0.00 3.95
194 195 4.854839 CGAAACAAACCAAAGAAACGAACT 59.145 37.500 0.00 0.00 0.00 3.01
195 196 5.219951 CGAAACAAACCAAAGAAACGAACTG 60.220 40.000 0.00 0.00 0.00 3.16
196 197 5.379732 AACAAACCAAAGAAACGAACTGA 57.620 34.783 0.00 0.00 0.00 3.41
198 199 5.774630 ACAAACCAAAGAAACGAACTGAAA 58.225 33.333 0.00 0.00 0.00 2.69
199 200 6.217294 ACAAACCAAAGAAACGAACTGAAAA 58.783 32.000 0.00 0.00 0.00 2.29
200 201 6.144886 ACAAACCAAAGAAACGAACTGAAAAC 59.855 34.615 0.00 0.00 0.00 2.43
201 202 5.638596 ACCAAAGAAACGAACTGAAAACT 57.361 34.783 0.00 0.00 0.00 2.66
202 203 5.399013 ACCAAAGAAACGAACTGAAAACTG 58.601 37.500 0.00 0.00 0.00 3.16
203 204 5.182380 ACCAAAGAAACGAACTGAAAACTGA 59.818 36.000 0.00 0.00 0.00 3.41
204 205 6.090129 CCAAAGAAACGAACTGAAAACTGAA 58.910 36.000 0.00 0.00 0.00 3.02
205 206 6.584563 CCAAAGAAACGAACTGAAAACTGAAA 59.415 34.615 0.00 0.00 0.00 2.69
206 207 7.115663 CCAAAGAAACGAACTGAAAACTGAAAA 59.884 33.333 0.00 0.00 0.00 2.29
207 208 8.647226 CAAAGAAACGAACTGAAAACTGAAAAT 58.353 29.630 0.00 0.00 0.00 1.82
208 209 9.849166 AAAGAAACGAACTGAAAACTGAAAATA 57.151 25.926 0.00 0.00 0.00 1.40
209 210 9.849166 AAGAAACGAACTGAAAACTGAAAATAA 57.151 25.926 0.00 0.00 0.00 1.40
214 215 9.673454 ACGAACTGAAAACTGAAAATAATAACC 57.327 29.630 0.00 0.00 0.00 2.85
215 216 9.672086 CGAACTGAAAACTGAAAATAATAACCA 57.328 29.630 0.00 0.00 0.00 3.67
219 220 9.329913 CTGAAAACTGAAAATAATAACCAGACG 57.670 33.333 0.00 0.00 0.00 4.18
220 221 8.293867 TGAAAACTGAAAATAATAACCAGACGG 58.706 33.333 0.00 0.00 38.77 4.79
221 222 7.989416 AAACTGAAAATAATAACCAGACGGA 57.011 32.000 0.00 0.00 35.59 4.69
222 223 7.989416 AACTGAAAATAATAACCAGACGGAA 57.011 32.000 0.00 0.00 35.59 4.30
223 224 7.989416 ACTGAAAATAATAACCAGACGGAAA 57.011 32.000 0.00 0.00 35.59 3.13
224 225 8.040716 ACTGAAAATAATAACCAGACGGAAAG 57.959 34.615 0.00 0.00 35.59 2.62
225 226 6.848451 TGAAAATAATAACCAGACGGAAAGC 58.152 36.000 0.00 0.00 35.59 3.51
226 227 6.431543 TGAAAATAATAACCAGACGGAAAGCA 59.568 34.615 0.00 0.00 35.59 3.91
227 228 6.827586 AAATAATAACCAGACGGAAAGCAA 57.172 33.333 0.00 0.00 35.59 3.91
229 230 6.827586 ATAATAACCAGACGGAAAGCAAAA 57.172 33.333 0.00 0.00 35.59 2.44
230 231 5.523438 AATAACCAGACGGAAAGCAAAAA 57.477 34.783 0.00 0.00 35.59 1.94
231 232 3.436700 AACCAGACGGAAAGCAAAAAG 57.563 42.857 0.00 0.00 35.59 2.27
232 233 1.681264 ACCAGACGGAAAGCAAAAAGG 59.319 47.619 0.00 0.00 35.59 3.11
233 234 1.953686 CCAGACGGAAAGCAAAAAGGA 59.046 47.619 0.00 0.00 0.00 3.36
234 235 2.360801 CCAGACGGAAAGCAAAAAGGAA 59.639 45.455 0.00 0.00 0.00 3.36
235 236 3.181480 CCAGACGGAAAGCAAAAAGGAAA 60.181 43.478 0.00 0.00 0.00 3.13
236 237 4.429108 CAGACGGAAAGCAAAAAGGAAAA 58.571 39.130 0.00 0.00 0.00 2.29
237 238 5.049828 CAGACGGAAAGCAAAAAGGAAAAT 58.950 37.500 0.00 0.00 0.00 1.82
238 239 6.212955 CAGACGGAAAGCAAAAAGGAAAATA 58.787 36.000 0.00 0.00 0.00 1.40
239 240 6.363357 CAGACGGAAAGCAAAAAGGAAAATAG 59.637 38.462 0.00 0.00 0.00 1.73
240 241 6.264518 AGACGGAAAGCAAAAAGGAAAATAGA 59.735 34.615 0.00 0.00 0.00 1.98
242 243 5.863935 CGGAAAGCAAAAAGGAAAATAGAGG 59.136 40.000 0.00 0.00 0.00 3.69
244 245 7.441836 GGAAAGCAAAAAGGAAAATAGAGGAA 58.558 34.615 0.00 0.00 0.00 3.36
245 246 7.931407 GGAAAGCAAAAAGGAAAATAGAGGAAA 59.069 33.333 0.00 0.00 0.00 3.13
246 247 9.325198 GAAAGCAAAAAGGAAAATAGAGGAAAA 57.675 29.630 0.00 0.00 0.00 2.29
247 248 8.662781 AAGCAAAAAGGAAAATAGAGGAAAAC 57.337 30.769 0.00 0.00 0.00 2.43
248 249 7.791029 AGCAAAAAGGAAAATAGAGGAAAACA 58.209 30.769 0.00 0.00 0.00 2.83
250 251 7.494298 GCAAAAAGGAAAATAGAGGAAAACACA 59.506 33.333 0.00 0.00 0.00 3.72
252 253 9.952030 AAAAAGGAAAATAGAGGAAAACACAAA 57.048 25.926 0.00 0.00 0.00 2.83
253 254 8.942338 AAAGGAAAATAGAGGAAAACACAAAC 57.058 30.769 0.00 0.00 0.00 2.93
256 257 7.559897 AGGAAAATAGAGGAAAACACAAACTCA 59.440 33.333 0.00 0.00 0.00 3.41
259 260 7.639113 AATAGAGGAAAACACAAACTCAACA 57.361 32.000 0.00 0.00 0.00 3.33
260 261 5.310720 AGAGGAAAACACAAACTCAACAC 57.689 39.130 0.00 0.00 0.00 3.32
261 262 4.091453 AGGAAAACACAAACTCAACACG 57.909 40.909 0.00 0.00 0.00 4.49
262 263 2.596862 GGAAAACACAAACTCAACACGC 59.403 45.455 0.00 0.00 0.00 5.34
265 266 1.732941 ACACAAACTCAACACGCTGA 58.267 45.000 0.00 0.00 0.00 4.26
266 267 2.080693 ACACAAACTCAACACGCTGAA 58.919 42.857 0.00 0.00 0.00 3.02
267 268 2.159572 ACACAAACTCAACACGCTGAAC 60.160 45.455 0.00 0.00 0.00 3.18
268 269 2.080693 ACAAACTCAACACGCTGAACA 58.919 42.857 0.00 0.00 0.00 3.18
269 270 2.486203 ACAAACTCAACACGCTGAACAA 59.514 40.909 0.00 0.00 0.00 2.83
270 271 3.057876 ACAAACTCAACACGCTGAACAAA 60.058 39.130 0.00 0.00 0.00 2.83
271 272 3.840890 AACTCAACACGCTGAACAAAA 57.159 38.095 0.00 0.00 0.00 2.44
300 301 4.160736 GCATAGTTGCGAAAGAAAAGGT 57.839 40.909 0.00 0.00 39.49 3.50
301 302 4.546570 GCATAGTTGCGAAAGAAAAGGTT 58.453 39.130 0.00 0.00 39.49 3.50
302 303 4.982295 GCATAGTTGCGAAAGAAAAGGTTT 59.018 37.500 0.00 0.00 39.49 3.27
303 304 5.107875 GCATAGTTGCGAAAGAAAAGGTTTG 60.108 40.000 0.00 0.00 39.49 2.93
305 306 2.217429 TGCGAAAGAAAAGGTTTGCC 57.783 45.000 0.00 0.00 0.00 4.52
306 307 1.478510 TGCGAAAGAAAAGGTTTGCCA 59.521 42.857 0.00 0.00 37.19 4.92
308 309 2.127251 CGAAAGAAAAGGTTTGCCAGC 58.873 47.619 0.00 0.00 37.19 4.85
310 311 1.494960 AAGAAAAGGTTTGCCAGCCA 58.505 45.000 0.00 0.00 37.19 4.75
311 312 1.043022 AGAAAAGGTTTGCCAGCCAG 58.957 50.000 0.00 0.00 37.19 4.85
314 315 1.123246 AAAGGTTTGCCAGCCAGCAT 61.123 50.000 0.00 0.00 43.64 3.79
315 316 0.251742 AAGGTTTGCCAGCCAGCATA 60.252 50.000 0.00 0.00 43.64 3.14
316 317 0.682209 AGGTTTGCCAGCCAGCATAG 60.682 55.000 0.00 0.00 43.64 2.23
319 320 0.038021 TTTGCCAGCCAGCATAGTCA 59.962 50.000 0.00 0.00 43.64 3.41
320 321 0.256752 TTGCCAGCCAGCATAGTCAT 59.743 50.000 0.00 0.00 43.64 3.06
321 322 0.464916 TGCCAGCCAGCATAGTCATG 60.465 55.000 0.00 0.00 38.00 3.07
322 323 0.179037 GCCAGCCAGCATAGTCATGA 60.179 55.000 0.00 0.00 33.67 3.07
323 324 1.544982 GCCAGCCAGCATAGTCATGAT 60.545 52.381 0.00 0.00 33.67 2.45
325 326 2.812591 CCAGCCAGCATAGTCATGATTC 59.187 50.000 0.00 0.00 33.67 2.52
326 327 3.473625 CAGCCAGCATAGTCATGATTCA 58.526 45.455 0.00 0.00 33.67 2.57
328 329 3.390311 AGCCAGCATAGTCATGATTCAGA 59.610 43.478 0.00 0.00 33.67 3.27
329 330 4.132336 GCCAGCATAGTCATGATTCAGAA 58.868 43.478 0.00 0.00 33.67 3.02
331 332 5.366460 CCAGCATAGTCATGATTCAGAACT 58.634 41.667 0.00 8.33 33.67 3.01
332 333 6.519382 CCAGCATAGTCATGATTCAGAACTA 58.481 40.000 0.00 11.30 33.67 2.24
334 335 7.660617 CCAGCATAGTCATGATTCAGAACTAAT 59.339 37.037 0.00 3.35 33.67 1.73
335 336 9.053840 CAGCATAGTCATGATTCAGAACTAATT 57.946 33.333 0.00 0.00 33.67 1.40
363 364 8.387354 TGTTGATGCTATATACACAAAAGTTCG 58.613 33.333 0.00 0.00 0.00 3.95
364 365 6.943981 TGATGCTATATACACAAAAGTTCGC 58.056 36.000 0.00 0.00 0.00 4.70
365 366 6.761242 TGATGCTATATACACAAAAGTTCGCT 59.239 34.615 0.00 0.00 0.00 4.93
366 367 6.583912 TGCTATATACACAAAAGTTCGCTC 57.416 37.500 0.00 0.00 0.00 5.03
367 368 5.231357 TGCTATATACACAAAAGTTCGCTCG 59.769 40.000 0.00 0.00 0.00 5.03
368 369 5.231568 GCTATATACACAAAAGTTCGCTCGT 59.768 40.000 0.00 0.00 0.00 4.18
369 370 3.788434 ATACACAAAAGTTCGCTCGTG 57.212 42.857 0.00 0.00 0.00 4.35
393 394 4.304939 GGATACGTATAACCTTGACCTGC 58.695 47.826 8.34 0.00 0.00 4.85
394 395 4.038883 GGATACGTATAACCTTGACCTGCT 59.961 45.833 8.34 0.00 0.00 4.24
396 397 2.829720 ACGTATAACCTTGACCTGCTGA 59.170 45.455 0.00 0.00 0.00 4.26
397 398 3.259876 ACGTATAACCTTGACCTGCTGAA 59.740 43.478 0.00 0.00 0.00 3.02
398 399 3.617263 CGTATAACCTTGACCTGCTGAAC 59.383 47.826 0.00 0.00 0.00 3.18
399 400 3.788227 ATAACCTTGACCTGCTGAACA 57.212 42.857 0.00 0.00 0.00 3.18
400 401 1.680338 AACCTTGACCTGCTGAACAC 58.320 50.000 0.00 0.00 0.00 3.32
401 402 0.546122 ACCTTGACCTGCTGAACACA 59.454 50.000 0.00 0.00 0.00 3.72
402 403 1.064758 ACCTTGACCTGCTGAACACAA 60.065 47.619 0.00 0.00 0.00 3.33
403 404 1.334869 CCTTGACCTGCTGAACACAAC 59.665 52.381 0.00 0.00 0.00 3.32
404 405 2.016318 CTTGACCTGCTGAACACAACA 58.984 47.619 0.00 0.00 0.00 3.33
405 406 2.346766 TGACCTGCTGAACACAACAT 57.653 45.000 0.00 0.00 0.00 2.71
406 407 1.948834 TGACCTGCTGAACACAACATG 59.051 47.619 0.00 0.00 0.00 3.21
425 426 5.745227 ACATGTGGTTGGATAGTTAAGAGG 58.255 41.667 0.00 0.00 0.00 3.69
427 428 3.054655 TGTGGTTGGATAGTTAAGAGGGC 60.055 47.826 0.00 0.00 0.00 5.19
428 429 3.054655 GTGGTTGGATAGTTAAGAGGGCA 60.055 47.826 0.00 0.00 0.00 5.36
430 431 3.200165 GGTTGGATAGTTAAGAGGGCAGT 59.800 47.826 0.00 0.00 0.00 4.40
431 432 4.192317 GTTGGATAGTTAAGAGGGCAGTG 58.808 47.826 0.00 0.00 0.00 3.66
433 434 2.772515 GGATAGTTAAGAGGGCAGTGGT 59.227 50.000 0.00 0.00 0.00 4.16
434 435 3.965347 GGATAGTTAAGAGGGCAGTGGTA 59.035 47.826 0.00 0.00 0.00 3.25
436 437 5.778750 GGATAGTTAAGAGGGCAGTGGTATA 59.221 44.000 0.00 0.00 0.00 1.47
437 438 6.440965 GGATAGTTAAGAGGGCAGTGGTATAT 59.559 42.308 0.00 0.00 0.00 0.86
438 439 5.810080 AGTTAAGAGGGCAGTGGTATATC 57.190 43.478 0.00 0.00 0.00 1.63
439 440 4.593634 AGTTAAGAGGGCAGTGGTATATCC 59.406 45.833 0.00 0.00 0.00 2.59
440 441 2.795291 AGAGGGCAGTGGTATATCCA 57.205 50.000 0.00 0.00 45.01 3.41
452 453 7.618019 AGTGGTATATCCAGTACATCATGTT 57.382 36.000 0.00 0.00 46.99 2.71
453 454 8.034313 AGTGGTATATCCAGTACATCATGTTT 57.966 34.615 0.00 0.00 46.99 2.83
454 455 8.150945 AGTGGTATATCCAGTACATCATGTTTC 58.849 37.037 0.00 0.00 46.99 2.78
455 456 7.450074 TGGTATATCCAGTACATCATGTTTCC 58.550 38.462 0.00 0.00 41.93 3.13
456 457 7.292356 TGGTATATCCAGTACATCATGTTTCCT 59.708 37.037 0.00 0.00 41.93 3.36
457 458 8.812972 GGTATATCCAGTACATCATGTTTCCTA 58.187 37.037 0.00 0.00 35.97 2.94
459 460 8.727100 ATATCCAGTACATCATGTTTCCTAGA 57.273 34.615 0.00 0.00 0.00 2.43
460 461 6.222038 TCCAGTACATCATGTTTCCTAGAC 57.778 41.667 0.00 0.00 0.00 2.59
461 462 5.958380 TCCAGTACATCATGTTTCCTAGACT 59.042 40.000 0.00 0.00 0.00 3.24
462 463 6.440647 TCCAGTACATCATGTTTCCTAGACTT 59.559 38.462 0.00 0.00 0.00 3.01
463 464 6.758886 CCAGTACATCATGTTTCCTAGACTTC 59.241 42.308 0.00 0.00 0.00 3.01
464 465 7.323420 CAGTACATCATGTTTCCTAGACTTCA 58.677 38.462 0.00 0.00 0.00 3.02
465 466 7.276658 CAGTACATCATGTTTCCTAGACTTCAC 59.723 40.741 0.00 0.00 0.00 3.18
467 468 6.715280 ACATCATGTTTCCTAGACTTCACAT 58.285 36.000 0.00 0.00 0.00 3.21
468 469 7.170965 ACATCATGTTTCCTAGACTTCACATT 58.829 34.615 0.00 0.00 0.00 2.71
469 470 7.120285 ACATCATGTTTCCTAGACTTCACATTG 59.880 37.037 0.00 0.00 0.00 2.82
470 471 5.939883 TCATGTTTCCTAGACTTCACATTGG 59.060 40.000 0.00 0.00 0.00 3.16
472 473 5.063204 TGTTTCCTAGACTTCACATTGGTG 58.937 41.667 0.00 0.00 46.66 4.17
490 491 9.857656 ACATTGGTGATCTCATTAATCTTGTAT 57.142 29.630 0.00 0.00 0.00 2.29
508 509 7.703328 TCTTGTATTTATTTCAGAATTCCGGC 58.297 34.615 0.65 0.00 0.00 6.13
510 511 5.818336 TGTATTTATTTCAGAATTCCGGCGA 59.182 36.000 9.30 0.00 0.00 5.54
511 512 6.485313 TGTATTTATTTCAGAATTCCGGCGAT 59.515 34.615 9.30 0.00 0.00 4.58
512 513 7.658167 TGTATTTATTTCAGAATTCCGGCGATA 59.342 33.333 9.30 0.00 0.00 2.92
513 514 7.687941 ATTTATTTCAGAATTCCGGCGATAT 57.312 32.000 9.30 0.00 0.00 1.63
514 515 7.504924 TTTATTTCAGAATTCCGGCGATATT 57.495 32.000 9.30 7.36 0.00 1.28
516 517 2.672714 TCAGAATTCCGGCGATATTCG 58.327 47.619 9.30 12.40 43.89 3.34
517 518 2.035449 TCAGAATTCCGGCGATATTCGT 59.965 45.455 9.30 4.61 42.81 3.85
518 519 2.800544 CAGAATTCCGGCGATATTCGTT 59.199 45.455 9.30 0.00 42.81 3.85
520 521 4.446385 CAGAATTCCGGCGATATTCGTTTA 59.554 41.667 9.30 0.00 42.81 2.01
522 523 3.441496 TTCCGGCGATATTCGTTTAGT 57.559 42.857 9.30 0.00 42.81 2.24
524 525 1.790623 CCGGCGATATTCGTTTAGTGG 59.209 52.381 9.30 0.00 42.81 4.00
525 526 1.790623 CGGCGATATTCGTTTAGTGGG 59.209 52.381 0.00 0.00 42.81 4.61
526 527 2.544277 CGGCGATATTCGTTTAGTGGGA 60.544 50.000 0.00 0.00 42.81 4.37
527 528 3.660865 GGCGATATTCGTTTAGTGGGAT 58.339 45.455 0.00 0.00 42.81 3.85
528 529 3.432252 GGCGATATTCGTTTAGTGGGATG 59.568 47.826 0.00 0.00 42.81 3.51
529 530 4.304110 GCGATATTCGTTTAGTGGGATGA 58.696 43.478 0.00 0.00 42.81 2.92
530 531 4.386049 GCGATATTCGTTTAGTGGGATGAG 59.614 45.833 0.00 0.00 42.81 2.90
531 532 5.769367 CGATATTCGTTTAGTGGGATGAGA 58.231 41.667 0.00 0.00 34.72 3.27
532 533 5.629849 CGATATTCGTTTAGTGGGATGAGAC 59.370 44.000 0.00 0.00 34.72 3.36
533 534 2.933495 TCGTTTAGTGGGATGAGACG 57.067 50.000 0.00 0.00 0.00 4.18
534 535 2.165167 TCGTTTAGTGGGATGAGACGT 58.835 47.619 0.00 0.00 0.00 4.34
535 536 2.163010 TCGTTTAGTGGGATGAGACGTC 59.837 50.000 7.70 7.70 0.00 4.34
536 537 2.734492 CGTTTAGTGGGATGAGACGTCC 60.734 54.545 13.01 4.42 34.92 4.79
541 542 1.153628 GGGATGAGACGTCCCGTTG 60.154 63.158 13.01 0.00 45.47 4.10
542 543 1.601419 GGGATGAGACGTCCCGTTGA 61.601 60.000 13.01 0.00 45.47 3.18
544 545 0.526662 GATGAGACGTCCCGTTGACT 59.473 55.000 13.01 0.00 41.37 3.41
546 547 1.733399 GAGACGTCCCGTTGACTGC 60.733 63.158 13.01 0.00 41.37 4.40
547 548 3.103911 GACGTCCCGTTGACTGCG 61.104 66.667 3.51 0.00 41.37 5.18
548 549 3.547249 GACGTCCCGTTGACTGCGA 62.547 63.158 3.51 0.00 41.37 5.10
549 550 2.805353 CGTCCCGTTGACTGCGAG 60.805 66.667 0.00 0.00 42.13 5.03
550 551 2.649034 GTCCCGTTGACTGCGAGA 59.351 61.111 0.00 0.00 41.03 4.04
551 552 1.215647 GTCCCGTTGACTGCGAGAT 59.784 57.895 0.00 0.00 41.03 2.75
553 554 2.456119 CCCGTTGACTGCGAGATGC 61.456 63.158 0.00 0.00 46.70 3.91
554 555 2.456119 CCGTTGACTGCGAGATGCC 61.456 63.158 0.00 0.00 45.60 4.40
555 556 1.446792 CGTTGACTGCGAGATGCCT 60.447 57.895 0.00 0.00 45.60 4.75
558 559 3.260483 GACTGCGAGATGCCTGCG 61.260 66.667 0.00 0.00 45.60 5.18
560 561 4.827087 CTGCGAGATGCCTGCGGT 62.827 66.667 0.00 0.00 45.60 5.68
561 562 3.430565 CTGCGAGATGCCTGCGGTA 62.431 63.158 0.00 0.00 45.60 4.02
564 565 1.141881 CGAGATGCCTGCGGTAACT 59.858 57.895 0.00 0.00 0.00 2.24
565 566 0.460284 CGAGATGCCTGCGGTAACTT 60.460 55.000 0.00 0.00 0.00 2.66
568 569 0.459585 GATGCCTGCGGTAACTTCGA 60.460 55.000 0.00 0.00 0.00 3.71
569 570 0.036765 ATGCCTGCGGTAACTTCGAA 60.037 50.000 0.00 0.00 0.00 3.71
570 571 0.249953 TGCCTGCGGTAACTTCGAAA 60.250 50.000 0.00 0.00 0.00 3.46
571 572 0.869730 GCCTGCGGTAACTTCGAAAA 59.130 50.000 0.00 0.00 0.00 2.29
572 573 1.264826 GCCTGCGGTAACTTCGAAAAA 59.735 47.619 0.00 0.00 0.00 1.94
573 574 2.095415 GCCTGCGGTAACTTCGAAAAAT 60.095 45.455 0.00 0.00 0.00 1.82
574 575 3.743886 CCTGCGGTAACTTCGAAAAATC 58.256 45.455 0.00 0.00 0.00 2.17
575 576 3.435671 CCTGCGGTAACTTCGAAAAATCT 59.564 43.478 0.00 0.00 0.00 2.40
577 578 4.059511 TGCGGTAACTTCGAAAAATCTCA 58.940 39.130 0.00 0.00 0.00 3.27
578 579 4.512198 TGCGGTAACTTCGAAAAATCTCAA 59.488 37.500 0.00 0.00 0.00 3.02
580 581 5.107220 GCGGTAACTTCGAAAAATCTCAAGA 60.107 40.000 0.00 0.00 0.00 3.02
581 582 6.402226 GCGGTAACTTCGAAAAATCTCAAGAT 60.402 38.462 0.00 0.00 36.07 2.40
583 584 8.108782 CGGTAACTTCGAAAAATCTCAAGATAC 58.891 37.037 0.00 0.00 33.73 2.24
584 585 9.152595 GGTAACTTCGAAAAATCTCAAGATACT 57.847 33.333 0.00 0.00 33.73 2.12
591 592 7.648112 TCGAAAAATCTCAAGATACTATGACGG 59.352 37.037 0.00 0.00 33.73 4.79
592 593 7.484035 AAAAATCTCAAGATACTATGACGGC 57.516 36.000 0.00 0.00 33.73 5.68
593 594 6.412362 AAATCTCAAGATACTATGACGGCT 57.588 37.500 0.00 0.00 33.73 5.52
594 595 5.637006 ATCTCAAGATACTATGACGGCTC 57.363 43.478 0.00 0.00 32.01 4.70
596 597 4.517075 TCTCAAGATACTATGACGGCTCAG 59.483 45.833 0.00 0.00 0.00 3.35
597 598 4.207955 TCAAGATACTATGACGGCTCAGT 58.792 43.478 0.00 0.00 0.00 3.41
598 599 4.276183 TCAAGATACTATGACGGCTCAGTC 59.724 45.833 0.00 1.58 41.30 3.51
599 600 4.093472 AGATACTATGACGGCTCAGTCT 57.907 45.455 0.00 0.00 41.47 3.24
600 601 4.069304 AGATACTATGACGGCTCAGTCTC 58.931 47.826 0.00 0.11 41.47 3.36
602 603 2.729194 ACTATGACGGCTCAGTCTCTT 58.271 47.619 0.00 0.00 41.47 2.85
603 604 2.425312 ACTATGACGGCTCAGTCTCTTG 59.575 50.000 0.00 2.09 41.47 3.02
604 605 1.550327 ATGACGGCTCAGTCTCTTGA 58.450 50.000 0.00 0.00 41.47 3.02
605 606 1.328279 TGACGGCTCAGTCTCTTGAA 58.672 50.000 0.00 0.00 41.47 2.69
606 607 1.270826 TGACGGCTCAGTCTCTTGAAG 59.729 52.381 0.00 0.00 41.47 3.02
607 608 0.605589 ACGGCTCAGTCTCTTGAAGG 59.394 55.000 0.00 0.00 0.00 3.46
608 609 0.605589 CGGCTCAGTCTCTTGAAGGT 59.394 55.000 0.00 0.00 0.00 3.50
610 611 1.620819 GGCTCAGTCTCTTGAAGGTGA 59.379 52.381 0.00 0.00 0.00 4.02
611 612 2.235898 GGCTCAGTCTCTTGAAGGTGAT 59.764 50.000 0.00 0.00 0.00 3.06
612 613 3.307339 GGCTCAGTCTCTTGAAGGTGATT 60.307 47.826 0.00 0.00 0.00 2.57
613 614 4.081420 GGCTCAGTCTCTTGAAGGTGATTA 60.081 45.833 0.00 0.00 0.00 1.75
614 615 5.396213 GGCTCAGTCTCTTGAAGGTGATTAT 60.396 44.000 0.00 0.00 0.00 1.28
616 617 6.922957 GCTCAGTCTCTTGAAGGTGATTATAG 59.077 42.308 0.00 0.00 0.00 1.31
617 618 7.201866 GCTCAGTCTCTTGAAGGTGATTATAGA 60.202 40.741 0.00 0.00 0.00 1.98
618 619 8.231692 TCAGTCTCTTGAAGGTGATTATAGAG 57.768 38.462 0.00 0.00 33.13 2.43
619 620 8.055790 TCAGTCTCTTGAAGGTGATTATAGAGA 58.944 37.037 0.00 0.00 36.18 3.10
620 621 8.859090 CAGTCTCTTGAAGGTGATTATAGAGAT 58.141 37.037 0.00 0.00 38.64 2.75
621 622 9.432982 AGTCTCTTGAAGGTGATTATAGAGATT 57.567 33.333 0.00 0.00 38.64 2.40
624 625 8.553085 TCTTGAAGGTGATTATAGAGATTGGA 57.447 34.615 0.00 0.00 0.00 3.53
626 627 9.217278 CTTGAAGGTGATTATAGAGATTGGATG 57.783 37.037 0.00 0.00 0.00 3.51
627 628 8.267620 TGAAGGTGATTATAGAGATTGGATGT 57.732 34.615 0.00 0.00 0.00 3.06
628 629 8.152898 TGAAGGTGATTATAGAGATTGGATGTG 58.847 37.037 0.00 0.00 0.00 3.21
629 630 6.471146 AGGTGATTATAGAGATTGGATGTGC 58.529 40.000 0.00 0.00 0.00 4.57
630 631 5.349817 GGTGATTATAGAGATTGGATGTGCG 59.650 44.000 0.00 0.00 0.00 5.34
631 632 5.928839 GTGATTATAGAGATTGGATGTGCGT 59.071 40.000 0.00 0.00 0.00 5.24
632 633 5.928264 TGATTATAGAGATTGGATGTGCGTG 59.072 40.000 0.00 0.00 0.00 5.34
633 634 3.827008 ATAGAGATTGGATGTGCGTGT 57.173 42.857 0.00 0.00 0.00 4.49
634 635 1.730501 AGAGATTGGATGTGCGTGTG 58.269 50.000 0.00 0.00 0.00 3.82
635 636 1.002430 AGAGATTGGATGTGCGTGTGT 59.998 47.619 0.00 0.00 0.00 3.72
636 637 1.129251 GAGATTGGATGTGCGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
637 638 0.454957 GATTGGATGTGCGTGTGTGC 60.455 55.000 0.00 0.00 0.00 4.57
638 639 1.171549 ATTGGATGTGCGTGTGTGCA 61.172 50.000 0.00 0.00 43.95 4.57
646 647 2.898181 TGCGTGTGTGCATTCATAAG 57.102 45.000 0.00 0.00 40.62 1.73
647 648 1.468127 TGCGTGTGTGCATTCATAAGG 59.532 47.619 0.00 0.00 40.62 2.69
648 649 1.202177 GCGTGTGTGCATTCATAAGGG 60.202 52.381 0.00 0.00 34.15 3.95
649 650 2.083774 CGTGTGTGCATTCATAAGGGT 58.916 47.619 0.00 0.00 0.00 4.34
652 653 1.750778 GTGTGCATTCATAAGGGTGGG 59.249 52.381 0.00 0.00 0.00 4.61
653 654 1.357420 TGTGCATTCATAAGGGTGGGT 59.643 47.619 0.00 0.00 0.00 4.51
655 656 1.357420 TGCATTCATAAGGGTGGGTGT 59.643 47.619 0.00 0.00 0.00 4.16
656 657 2.578480 TGCATTCATAAGGGTGGGTGTA 59.422 45.455 0.00 0.00 0.00 2.90
657 658 3.204158 TGCATTCATAAGGGTGGGTGTAT 59.796 43.478 0.00 0.00 0.00 2.29
658 659 4.413851 TGCATTCATAAGGGTGGGTGTATA 59.586 41.667 0.00 0.00 0.00 1.47
659 660 4.760204 GCATTCATAAGGGTGGGTGTATAC 59.240 45.833 0.00 0.00 0.00 1.47
660 661 5.456186 GCATTCATAAGGGTGGGTGTATACT 60.456 44.000 4.17 0.00 0.00 2.12
673 5747 4.201950 GGGTGTATACTCGTGTACGTGAAT 60.202 45.833 12.65 4.10 40.80 2.57
689 5763 5.946298 ACGTGAATGACTTCGATTGTACTA 58.054 37.500 0.00 0.00 33.86 1.82
728 5806 1.077212 GATGGATGCACCTGTGGCT 60.077 57.895 0.00 0.00 39.86 4.75
730 5808 2.034687 GGATGCACCTGTGGCTGT 59.965 61.111 0.00 0.00 35.41 4.40
731 5809 2.338015 GGATGCACCTGTGGCTGTG 61.338 63.158 0.00 0.00 35.41 3.66
732 5810 2.282674 ATGCACCTGTGGCTGTGG 60.283 61.111 0.00 0.00 33.08 4.17
735 5813 2.282674 CACCTGTGGCTGTGGCAT 60.283 61.111 0.00 0.00 40.92 4.40
742 5820 1.256812 GTGGCTGTGGCATTAAACCT 58.743 50.000 0.00 0.00 40.92 3.50
744 5822 2.823154 GTGGCTGTGGCATTAAACCTAA 59.177 45.455 0.00 0.00 40.92 2.69
776 5854 1.069090 GCCAGAAGTCCACGACACA 59.931 57.895 0.00 0.00 34.60 3.72
818 5896 4.085158 CGATCGATTGCTTGCTTCTCTTAG 60.085 45.833 10.26 0.00 0.00 2.18
915 5993 1.402456 CCGAGGCCAGCACGTATATAC 60.402 57.143 5.01 2.53 0.00 1.47
935 6013 0.388520 TGGACGCAGAACACATCGAG 60.389 55.000 0.00 0.00 0.00 4.04
989 6068 2.980233 AGCTCGCACCACCTTTGC 60.980 61.111 0.00 0.00 36.57 3.68
1009 6091 1.405526 CGATCACCTTCACCCGTTCAT 60.406 52.381 0.00 0.00 0.00 2.57
1012 6094 1.375523 ACCTTCACCCGTTCATCGC 60.376 57.895 0.00 0.00 38.35 4.58
1056 6140 4.559063 CAGCTAGCCATGGCCGCT 62.559 66.667 33.66 33.66 45.04 5.52
1131 6215 1.112113 AGCATACCCTCGTCGTCAAT 58.888 50.000 0.00 0.00 0.00 2.57
1178 6271 3.951037 TGCTTCTGTTCTTTAAGCCACAA 59.049 39.130 0.00 0.00 43.93 3.33
1270 6366 0.684535 TGAGGGTGCAGATCGACAAA 59.315 50.000 0.00 0.00 0.00 2.83
1536 6638 1.893919 AAGAAGCGCCAGGAGGAGAC 61.894 60.000 2.29 0.00 36.74 3.36
1556 6658 2.035940 AGGAGGACGCGAGGAAGT 59.964 61.111 15.93 0.00 0.00 3.01
1724 6847 4.892965 TGGTTGGCGTTGCTGGCT 62.893 61.111 0.00 0.00 35.06 4.75
1865 7001 0.731417 AGTGACGAAGATACCGGACG 59.269 55.000 9.46 6.42 0.00 4.79
2035 7186 4.652421 AAATGTGATTGTTCTGTGCACA 57.348 36.364 20.37 20.37 42.79 4.57
2112 7264 8.953368 AACTATATACTCCCTTTTTGGTAACG 57.047 34.615 0.00 0.00 42.51 3.18
2113 7265 8.310122 ACTATATACTCCCTTTTTGGTAACGA 57.690 34.615 0.00 0.00 42.51 3.85
2114 7266 8.419442 ACTATATACTCCCTTTTTGGTAACGAG 58.581 37.037 0.00 0.00 42.51 4.18
2119 7271 4.721132 TCCCTTTTTGGTAACGAGATTGT 58.279 39.130 0.00 0.00 42.51 2.71
2161 7313 8.417780 AAGACTTAATCAATTCTCAGTCGATG 57.582 34.615 0.00 0.00 36.56 3.84
2163 7315 6.344500 ACTTAATCAATTCTCAGTCGATGCT 58.656 36.000 0.00 0.00 0.00 3.79
2164 7316 6.820656 ACTTAATCAATTCTCAGTCGATGCTT 59.179 34.615 0.00 0.00 0.00 3.91
2165 7317 7.335422 ACTTAATCAATTCTCAGTCGATGCTTT 59.665 33.333 0.00 0.00 0.00 3.51
2166 7318 8.716646 TTAATCAATTCTCAGTCGATGCTTTA 57.283 30.769 0.00 0.00 0.00 1.85
2176 7328 9.578439 TCTCAGTCGATGCTTTATATATTCATG 57.422 33.333 0.00 0.00 0.00 3.07
2201 7353 0.179059 TTATGTGGCGATCCGTGCAT 60.179 50.000 0.00 0.00 34.14 3.96
2202 7354 0.179059 TATGTGGCGATCCGTGCATT 60.179 50.000 0.00 0.00 34.14 3.56
2203 7355 1.031571 ATGTGGCGATCCGTGCATTT 61.032 50.000 0.00 0.00 34.14 2.32
2204 7356 1.240641 TGTGGCGATCCGTGCATTTT 61.241 50.000 0.00 0.00 34.14 1.82
2206 7358 1.333619 GTGGCGATCCGTGCATTTTAT 59.666 47.619 0.00 0.00 34.14 1.40
2207 7359 2.020720 TGGCGATCCGTGCATTTTATT 58.979 42.857 0.00 0.00 34.14 1.40
2208 7360 2.425312 TGGCGATCCGTGCATTTTATTT 59.575 40.909 0.00 0.00 34.14 1.40
2209 7361 3.119316 TGGCGATCCGTGCATTTTATTTT 60.119 39.130 0.00 0.00 34.14 1.82
2210 7362 3.862845 GGCGATCCGTGCATTTTATTTTT 59.137 39.130 0.00 0.00 0.00 1.94
2346 7498 4.100963 TGAATTGCTTCTATCCGCTCCTAA 59.899 41.667 0.00 0.00 32.29 2.69
2361 7513 1.006639 TCCTAATCCCCAAACAAGGCC 59.993 52.381 0.00 0.00 0.00 5.19
2365 7517 2.459555 ATCCCCAAACAAGGCCATAG 57.540 50.000 5.01 0.00 0.00 2.23
2376 7528 2.908015 GCCATAGGGGACAAGCGA 59.092 61.111 0.00 0.00 40.01 4.93
2377 7529 1.223487 GCCATAGGGGACAAGCGAA 59.777 57.895 0.00 0.00 40.01 4.70
2378 7530 0.179018 GCCATAGGGGACAAGCGAAT 60.179 55.000 0.00 0.00 40.01 3.34
2391 7547 3.008049 ACAAGCGAATCTGTTCTACCCTT 59.992 43.478 0.00 0.00 32.00 3.95
2392 7548 4.222145 ACAAGCGAATCTGTTCTACCCTTA 59.778 41.667 0.00 0.00 32.00 2.69
2393 7549 4.388378 AGCGAATCTGTTCTACCCTTAC 57.612 45.455 0.00 0.00 32.00 2.34
2394 7550 4.024670 AGCGAATCTGTTCTACCCTTACT 58.975 43.478 0.00 0.00 32.00 2.24
2400 7556 1.117994 GTTCTACCCTTACTCCCGGG 58.882 60.000 16.85 16.85 46.26 5.73
2401 7557 1.009997 TTCTACCCTTACTCCCGGGA 58.990 55.000 25.06 25.06 43.44 5.14
2402 7558 1.009997 TCTACCCTTACTCCCGGGAA 58.990 55.000 26.68 7.95 43.44 3.97
2417 7573 2.759795 GAAAGACTGCAGGCCCCT 59.240 61.111 18.28 0.00 0.00 4.79
2419 7575 0.540597 GAAAGACTGCAGGCCCCTTT 60.541 55.000 18.28 18.60 0.00 3.11
2432 7588 2.057922 GCCCCTTTCCTCCATCTATCA 58.942 52.381 0.00 0.00 0.00 2.15
2434 7590 2.373502 CCCCTTTCCTCCATCTATCACC 59.626 54.545 0.00 0.00 0.00 4.02
2446 7603 2.684943 TCTATCACCCCGGCAATAGAA 58.315 47.619 0.00 0.00 29.96 2.10
2451 7608 2.203351 CCCGGCAATAGAAGGGGC 60.203 66.667 0.00 0.00 40.18 5.80
2473 7630 1.214673 GGGACCCCAGGAATTTAGTCC 59.785 57.143 0.00 0.00 42.48 3.85
2475 7632 0.916809 ACCCCAGGAATTTAGTCCGG 59.083 55.000 0.00 0.00 43.03 5.14
2480 7637 3.962718 CCCAGGAATTTAGTCCGGTAGTA 59.037 47.826 0.00 0.00 43.03 1.82
2519 7676 9.790344 ATAAATTTAGGATCTGTCTCCATTCAG 57.210 33.333 3.94 0.00 37.81 3.02
2530 7687 1.746615 CCATTCAGTGGTGGCGAGG 60.747 63.158 3.06 0.00 43.44 4.63
2541 7698 4.408821 GGCGAGGTGATGGTGCCA 62.409 66.667 0.00 0.00 45.06 4.92
2542 7699 2.124570 GCGAGGTGATGGTGCCAT 60.125 61.111 2.95 2.95 39.69 4.40
2543 7700 1.750399 GCGAGGTGATGGTGCCATT 60.750 57.895 5.08 0.00 36.70 3.16
2575 7732 2.596851 GGTCTCTCTGCCTTGCCCA 61.597 63.158 0.00 0.00 0.00 5.36
2602 7759 3.738281 CGGAGATGCTTCCTCGTAATGTT 60.738 47.826 0.00 0.00 34.96 2.71
2609 7766 3.939066 CTTCCTCGTAATGTTGGAAGGT 58.061 45.455 11.52 0.00 46.96 3.50
2612 7769 3.325425 TCCTCGTAATGTTGGAAGGTTGA 59.675 43.478 0.00 0.00 0.00 3.18
2635 7792 3.601443 AACAGGTCTGATTCTTCGAGG 57.399 47.619 4.84 0.00 0.00 4.63
2649 7806 2.561373 GAGGCCGGCGTTTTCTTG 59.439 61.111 24.48 0.00 0.00 3.02
2651 7808 2.050442 GGCCGGCGTTTTCTTGTG 60.050 61.111 22.54 0.00 0.00 3.33
2665 7822 2.832563 TCTTGTGCATGTTTGTCTCGA 58.167 42.857 0.00 0.00 0.00 4.04
2666 7823 2.543848 TCTTGTGCATGTTTGTCTCGAC 59.456 45.455 0.00 0.00 0.00 4.20
2668 7825 0.517316 GTGCATGTTTGTCTCGACCC 59.483 55.000 0.00 0.00 0.00 4.46
2670 7827 1.621317 TGCATGTTTGTCTCGACCCTA 59.379 47.619 0.00 0.00 0.00 3.53
2679 7836 2.508716 TGTCTCGACCCTACTGTCCTAT 59.491 50.000 0.00 0.00 31.35 2.57
2680 7837 3.713248 TGTCTCGACCCTACTGTCCTATA 59.287 47.826 0.00 0.00 31.35 1.31
2690 7848 5.394738 CCTACTGTCCTATATGTCCTCCAA 58.605 45.833 0.00 0.00 0.00 3.53
2694 7852 6.071984 ACTGTCCTATATGTCCTCCAACTAG 58.928 44.000 0.00 0.00 0.00 2.57
2702 7860 3.165875 TGTCCTCCAACTAGAGTTCTGG 58.834 50.000 0.00 0.00 35.83 3.86
2707 7865 1.404315 CCAACTAGAGTTCTGGCCGAC 60.404 57.143 0.00 0.00 35.83 4.79
2718 7876 1.202879 TCTGGCCGACAAAGTTTGGAT 60.203 47.619 19.45 0.00 34.12 3.41
2726 7884 3.612860 CGACAAAGTTTGGATAGTCTCGG 59.387 47.826 19.45 0.62 34.12 4.63
2733 7891 1.621992 TGGATAGTCTCGGCCTCATC 58.378 55.000 0.00 0.00 0.00 2.92
2742 7900 1.908793 CGGCCTCATCGGGGTATCT 60.909 63.158 0.00 0.00 0.00 1.98
2754 7912 3.517901 TCGGGGTATCTGAGATTTGTGTT 59.482 43.478 0.00 0.00 0.00 3.32
2755 7913 3.871594 CGGGGTATCTGAGATTTGTGTTC 59.128 47.826 0.00 0.00 0.00 3.18
2759 7917 6.098409 GGGGTATCTGAGATTTGTGTTCTCTA 59.902 42.308 0.00 0.00 40.26 2.43
2775 7933 2.312140 TCTCTAACTCTGTAGGGCAGGT 59.688 50.000 0.00 0.00 45.08 4.00
2776 7934 3.100671 CTCTAACTCTGTAGGGCAGGTT 58.899 50.000 0.00 0.00 45.08 3.50
2789 7947 1.744320 GCAGGTTCTGGGGCGTTTTT 61.744 55.000 0.00 0.00 31.21 1.94
2817 7975 2.937149 GCCCTCTCGTACATTTTCTTCC 59.063 50.000 0.00 0.00 0.00 3.46
2828 7986 0.034337 TTTTCTTCCTCGGGGTGACG 59.966 55.000 0.00 0.00 0.00 4.35
2833 7991 0.248289 TTCCTCGGGGTGACGATTTC 59.752 55.000 0.00 0.00 42.62 2.17
2839 7997 1.479323 CGGGGTGACGATTTCCTAAGA 59.521 52.381 0.00 0.00 35.47 2.10
2844 8002 5.066117 GGGGTGACGATTTCCTAAGAAAATC 59.934 44.000 0.00 0.00 44.91 2.17
2870 8028 7.850982 CGTGGTTATTATAAAATGACACTCAGC 59.149 37.037 0.00 0.00 34.19 4.26
2881 8039 1.326852 GACACTCAGCTGATGCGATTG 59.673 52.381 18.63 6.08 45.42 2.67
2913 8072 7.621832 TCAATTTGAACTTTTGTATTGAGCG 57.378 32.000 0.00 0.00 32.13 5.03
2914 8073 7.421599 TCAATTTGAACTTTTGTATTGAGCGA 58.578 30.769 0.00 0.00 32.13 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.468746 TCGGTTAATGAGAGAAAACCAAGTG 59.531 40.000 4.18 0.00 41.20 3.16
1 2 5.617252 TCGGTTAATGAGAGAAAACCAAGT 58.383 37.500 4.18 0.00 41.20 3.16
3 4 5.860611 TCTCGGTTAATGAGAGAAAACCAA 58.139 37.500 6.35 0.00 41.20 3.67
10 11 6.380274 ACCTAACATTCTCGGTTAATGAGAGA 59.620 38.462 9.48 6.86 42.97 3.10
13 14 7.611213 AAACCTAACATTCTCGGTTAATGAG 57.389 36.000 10.81 2.19 38.72 2.90
14 15 7.989416 AAAACCTAACATTCTCGGTTAATGA 57.011 32.000 10.81 0.00 38.72 2.57
16 17 8.398878 TCAAAAACCTAACATTCTCGGTTAAT 57.601 30.769 0.00 0.00 38.72 1.40
18 19 7.989416 ATCAAAAACCTAACATTCTCGGTTA 57.011 32.000 0.00 0.00 38.72 2.85
19 20 6.894339 ATCAAAAACCTAACATTCTCGGTT 57.106 33.333 0.00 0.00 41.25 4.44
20 21 6.348213 CGAATCAAAAACCTAACATTCTCGGT 60.348 38.462 0.00 0.00 0.00 4.69
22 23 6.021596 CCGAATCAAAAACCTAACATTCTCG 58.978 40.000 0.00 0.00 0.00 4.04
24 25 6.894339 ACCGAATCAAAAACCTAACATTCT 57.106 33.333 0.00 0.00 0.00 2.40
26 27 8.725405 AAAAACCGAATCAAAAACCTAACATT 57.275 26.923 0.00 0.00 0.00 2.71
49 50 9.427821 AGAGAGATGGTCTAGCTTATAAGAAAA 57.572 33.333 16.85 0.00 34.71 2.29
50 51 9.427821 AAGAGAGATGGTCTAGCTTATAAGAAA 57.572 33.333 16.85 2.10 34.71 2.52
51 52 9.073475 GAAGAGAGATGGTCTAGCTTATAAGAA 57.927 37.037 16.85 2.46 34.71 2.52
52 53 8.444783 AGAAGAGAGATGGTCTAGCTTATAAGA 58.555 37.037 16.85 0.00 34.71 2.10
54 55 9.073475 GAAGAAGAGAGATGGTCTAGCTTATAA 57.927 37.037 0.00 0.00 34.71 0.98
55 56 8.444783 AGAAGAAGAGAGATGGTCTAGCTTATA 58.555 37.037 0.00 0.00 34.71 0.98
56 57 7.297614 AGAAGAAGAGAGATGGTCTAGCTTAT 58.702 38.462 0.00 0.00 34.71 1.73
58 59 5.518865 AGAAGAAGAGAGATGGTCTAGCTT 58.481 41.667 0.00 0.00 34.71 3.74
59 60 5.129368 AGAAGAAGAGAGATGGTCTAGCT 57.871 43.478 0.00 0.00 34.71 3.32
60 61 5.852282 AAGAAGAAGAGAGATGGTCTAGC 57.148 43.478 0.00 0.00 34.71 3.42
62 63 8.908903 GTTCATAAGAAGAAGAGAGATGGTCTA 58.091 37.037 0.00 0.00 32.35 2.59
63 64 7.619302 AGTTCATAAGAAGAAGAGAGATGGTCT 59.381 37.037 0.00 0.00 34.12 3.85
64 65 7.706179 CAGTTCATAAGAAGAAGAGAGATGGTC 59.294 40.741 0.00 0.00 33.63 4.02
65 66 7.555087 CAGTTCATAAGAAGAAGAGAGATGGT 58.445 38.462 0.00 0.00 33.63 3.55
67 68 7.040494 TGCAGTTCATAAGAAGAAGAGAGATG 58.960 38.462 0.00 0.00 33.63 2.90
68 69 7.180322 TGCAGTTCATAAGAAGAAGAGAGAT 57.820 36.000 0.00 0.00 33.63 2.75
69 70 6.596309 TGCAGTTCATAAGAAGAAGAGAGA 57.404 37.500 0.00 0.00 33.63 3.10
71 72 8.450578 TTTTTGCAGTTCATAAGAAGAAGAGA 57.549 30.769 0.00 0.00 33.63 3.10
95 96 1.601166 GTGTGCGAGGGTAGGTTTTT 58.399 50.000 0.00 0.00 0.00 1.94
96 97 0.601841 CGTGTGCGAGGGTAGGTTTT 60.602 55.000 0.00 0.00 41.33 2.43
97 98 1.005394 CGTGTGCGAGGGTAGGTTT 60.005 57.895 0.00 0.00 41.33 3.27
98 99 1.904865 TCGTGTGCGAGGGTAGGTT 60.905 57.895 0.00 0.00 42.81 3.50
108 109 1.525197 TGCTTTTAAGAGTCGTGTGCG 59.475 47.619 0.00 0.00 39.92 5.34
109 110 3.602390 TTGCTTTTAAGAGTCGTGTGC 57.398 42.857 0.00 0.00 0.00 4.57
110 111 5.403897 TCTTTGCTTTTAAGAGTCGTGTG 57.596 39.130 0.00 0.00 0.00 3.82
111 112 6.431198 TTTCTTTGCTTTTAAGAGTCGTGT 57.569 33.333 0.00 0.00 33.49 4.49
112 113 6.967199 AGTTTTCTTTGCTTTTAAGAGTCGTG 59.033 34.615 0.00 0.00 33.49 4.35
113 114 6.967199 CAGTTTTCTTTGCTTTTAAGAGTCGT 59.033 34.615 0.00 0.00 33.49 4.34
114 115 6.075362 GCAGTTTTCTTTGCTTTTAAGAGTCG 60.075 38.462 0.00 0.00 37.35 4.18
126 127 5.034797 ACGTTTCTTAGCAGTTTTCTTTGC 58.965 37.500 0.00 0.00 40.57 3.68
129 130 7.781548 TTCTACGTTTCTTAGCAGTTTTCTT 57.218 32.000 0.00 0.00 0.00 2.52
130 131 7.781548 TTTCTACGTTTCTTAGCAGTTTTCT 57.218 32.000 0.00 0.00 0.00 2.52
133 134 7.191551 GGTTTTTCTACGTTTCTTAGCAGTTT 58.808 34.615 0.00 0.00 0.00 2.66
134 135 6.238566 GGGTTTTTCTACGTTTCTTAGCAGTT 60.239 38.462 0.00 0.00 0.00 3.16
135 136 5.237996 GGGTTTTTCTACGTTTCTTAGCAGT 59.762 40.000 0.00 0.00 0.00 4.40
136 137 5.237779 TGGGTTTTTCTACGTTTCTTAGCAG 59.762 40.000 0.00 0.00 0.00 4.24
137 138 5.124645 TGGGTTTTTCTACGTTTCTTAGCA 58.875 37.500 0.00 0.00 0.00 3.49
138 139 5.678132 TGGGTTTTTCTACGTTTCTTAGC 57.322 39.130 0.00 0.00 0.00 3.09
139 140 8.914328 TTTTTGGGTTTTTCTACGTTTCTTAG 57.086 30.769 0.00 0.00 0.00 2.18
162 163 1.067071 TGGTTTGTTTCGCCGGTTTTT 60.067 42.857 1.90 0.00 0.00 1.94
163 164 0.531200 TGGTTTGTTTCGCCGGTTTT 59.469 45.000 1.90 0.00 0.00 2.43
164 165 0.531200 TTGGTTTGTTTCGCCGGTTT 59.469 45.000 1.90 0.00 0.00 3.27
165 166 0.531200 TTTGGTTTGTTTCGCCGGTT 59.469 45.000 1.90 0.00 0.00 4.44
166 167 0.101579 CTTTGGTTTGTTTCGCCGGT 59.898 50.000 1.90 0.00 0.00 5.28
167 168 0.382515 TCTTTGGTTTGTTTCGCCGG 59.617 50.000 0.00 0.00 0.00 6.13
168 169 2.196295 TTCTTTGGTTTGTTTCGCCG 57.804 45.000 0.00 0.00 0.00 6.46
169 170 2.280445 CGTTTCTTTGGTTTGTTTCGCC 59.720 45.455 0.00 0.00 0.00 5.54
170 171 3.172824 TCGTTTCTTTGGTTTGTTTCGC 58.827 40.909 0.00 0.00 0.00 4.70
171 172 4.854839 AGTTCGTTTCTTTGGTTTGTTTCG 59.145 37.500 0.00 0.00 0.00 3.46
172 173 5.859648 TCAGTTCGTTTCTTTGGTTTGTTTC 59.140 36.000 0.00 0.00 0.00 2.78
174 175 5.379732 TCAGTTCGTTTCTTTGGTTTGTT 57.620 34.783 0.00 0.00 0.00 2.83
175 176 5.379732 TTCAGTTCGTTTCTTTGGTTTGT 57.620 34.783 0.00 0.00 0.00 2.83
177 178 6.364976 CAGTTTTCAGTTCGTTTCTTTGGTTT 59.635 34.615 0.00 0.00 0.00 3.27
178 179 5.861787 CAGTTTTCAGTTCGTTTCTTTGGTT 59.138 36.000 0.00 0.00 0.00 3.67
179 180 5.182380 TCAGTTTTCAGTTCGTTTCTTTGGT 59.818 36.000 0.00 0.00 0.00 3.67
180 181 5.636837 TCAGTTTTCAGTTCGTTTCTTTGG 58.363 37.500 0.00 0.00 0.00 3.28
181 182 7.561237 TTTCAGTTTTCAGTTCGTTTCTTTG 57.439 32.000 0.00 0.00 0.00 2.77
183 184 9.849166 TTATTTTCAGTTTTCAGTTCGTTTCTT 57.151 25.926 0.00 0.00 0.00 2.52
188 189 9.673454 GGTTATTATTTTCAGTTTTCAGTTCGT 57.327 29.630 0.00 0.00 0.00 3.85
189 190 9.672086 TGGTTATTATTTTCAGTTTTCAGTTCG 57.328 29.630 0.00 0.00 0.00 3.95
193 194 9.329913 CGTCTGGTTATTATTTTCAGTTTTCAG 57.670 33.333 0.00 0.00 0.00 3.02
194 195 8.293867 CCGTCTGGTTATTATTTTCAGTTTTCA 58.706 33.333 0.00 0.00 0.00 2.69
195 196 8.508875 TCCGTCTGGTTATTATTTTCAGTTTTC 58.491 33.333 0.00 0.00 36.30 2.29
196 197 8.398878 TCCGTCTGGTTATTATTTTCAGTTTT 57.601 30.769 0.00 0.00 36.30 2.43
198 199 7.989416 TTCCGTCTGGTTATTATTTTCAGTT 57.011 32.000 0.00 0.00 36.30 3.16
199 200 7.361799 GCTTTCCGTCTGGTTATTATTTTCAGT 60.362 37.037 0.00 0.00 36.30 3.41
200 201 6.967199 GCTTTCCGTCTGGTTATTATTTTCAG 59.033 38.462 0.00 0.00 36.30 3.02
201 202 6.431543 TGCTTTCCGTCTGGTTATTATTTTCA 59.568 34.615 0.00 0.00 36.30 2.69
202 203 6.848451 TGCTTTCCGTCTGGTTATTATTTTC 58.152 36.000 0.00 0.00 36.30 2.29
203 204 6.827586 TGCTTTCCGTCTGGTTATTATTTT 57.172 33.333 0.00 0.00 36.30 1.82
204 205 6.827586 TTGCTTTCCGTCTGGTTATTATTT 57.172 33.333 0.00 0.00 36.30 1.40
205 206 6.827586 TTTGCTTTCCGTCTGGTTATTATT 57.172 33.333 0.00 0.00 36.30 1.40
206 207 6.827586 TTTTGCTTTCCGTCTGGTTATTAT 57.172 33.333 0.00 0.00 36.30 1.28
207 208 6.294286 CCTTTTTGCTTTCCGTCTGGTTATTA 60.294 38.462 0.00 0.00 36.30 0.98
208 209 5.508994 CCTTTTTGCTTTCCGTCTGGTTATT 60.509 40.000 0.00 0.00 36.30 1.40
209 210 4.022329 CCTTTTTGCTTTCCGTCTGGTTAT 60.022 41.667 0.00 0.00 36.30 1.89
210 211 3.316868 CCTTTTTGCTTTCCGTCTGGTTA 59.683 43.478 0.00 0.00 36.30 2.85
211 212 2.100749 CCTTTTTGCTTTCCGTCTGGTT 59.899 45.455 0.00 0.00 36.30 3.67
212 213 1.681264 CCTTTTTGCTTTCCGTCTGGT 59.319 47.619 0.00 0.00 36.30 4.00
213 214 1.953686 TCCTTTTTGCTTTCCGTCTGG 59.046 47.619 0.00 0.00 0.00 3.86
214 215 3.708563 TTCCTTTTTGCTTTCCGTCTG 57.291 42.857 0.00 0.00 0.00 3.51
215 216 4.729227 TTTTCCTTTTTGCTTTCCGTCT 57.271 36.364 0.00 0.00 0.00 4.18
216 217 6.443792 TCTATTTTCCTTTTTGCTTTCCGTC 58.556 36.000 0.00 0.00 0.00 4.79
217 218 6.399639 TCTATTTTCCTTTTTGCTTTCCGT 57.600 33.333 0.00 0.00 0.00 4.69
218 219 5.863935 CCTCTATTTTCCTTTTTGCTTTCCG 59.136 40.000 0.00 0.00 0.00 4.30
219 220 6.993079 TCCTCTATTTTCCTTTTTGCTTTCC 58.007 36.000 0.00 0.00 0.00 3.13
220 221 8.887036 TTTCCTCTATTTTCCTTTTTGCTTTC 57.113 30.769 0.00 0.00 0.00 2.62
221 222 9.109393 GTTTTCCTCTATTTTCCTTTTTGCTTT 57.891 29.630 0.00 0.00 0.00 3.51
222 223 8.264347 TGTTTTCCTCTATTTTCCTTTTTGCTT 58.736 29.630 0.00 0.00 0.00 3.91
223 224 7.710907 GTGTTTTCCTCTATTTTCCTTTTTGCT 59.289 33.333 0.00 0.00 0.00 3.91
224 225 7.494298 TGTGTTTTCCTCTATTTTCCTTTTTGC 59.506 33.333 0.00 0.00 0.00 3.68
225 226 8.940768 TGTGTTTTCCTCTATTTTCCTTTTTG 57.059 30.769 0.00 0.00 0.00 2.44
226 227 9.952030 TTTGTGTTTTCCTCTATTTTCCTTTTT 57.048 25.926 0.00 0.00 0.00 1.94
227 228 9.378551 GTTTGTGTTTTCCTCTATTTTCCTTTT 57.621 29.630 0.00 0.00 0.00 2.27
229 230 8.306313 AGTTTGTGTTTTCCTCTATTTTCCTT 57.694 30.769 0.00 0.00 0.00 3.36
230 231 7.559897 TGAGTTTGTGTTTTCCTCTATTTTCCT 59.440 33.333 0.00 0.00 0.00 3.36
231 232 7.712797 TGAGTTTGTGTTTTCCTCTATTTTCC 58.287 34.615 0.00 0.00 0.00 3.13
232 233 9.020813 GTTGAGTTTGTGTTTTCCTCTATTTTC 57.979 33.333 0.00 0.00 0.00 2.29
233 234 8.527810 TGTTGAGTTTGTGTTTTCCTCTATTTT 58.472 29.630 0.00 0.00 0.00 1.82
234 235 7.973944 GTGTTGAGTTTGTGTTTTCCTCTATTT 59.026 33.333 0.00 0.00 0.00 1.40
235 236 7.480810 GTGTTGAGTTTGTGTTTTCCTCTATT 58.519 34.615 0.00 0.00 0.00 1.73
236 237 6.238374 CGTGTTGAGTTTGTGTTTTCCTCTAT 60.238 38.462 0.00 0.00 0.00 1.98
237 238 5.064198 CGTGTTGAGTTTGTGTTTTCCTCTA 59.936 40.000 0.00 0.00 0.00 2.43
238 239 4.142687 CGTGTTGAGTTTGTGTTTTCCTCT 60.143 41.667 0.00 0.00 0.00 3.69
239 240 4.095610 CGTGTTGAGTTTGTGTTTTCCTC 58.904 43.478 0.00 0.00 0.00 3.71
240 241 3.672241 GCGTGTTGAGTTTGTGTTTTCCT 60.672 43.478 0.00 0.00 0.00 3.36
242 243 3.300590 CAGCGTGTTGAGTTTGTGTTTTC 59.699 43.478 0.00 0.00 0.00 2.29
244 245 2.486203 TCAGCGTGTTGAGTTTGTGTTT 59.514 40.909 0.00 0.00 0.00 2.83
245 246 2.080693 TCAGCGTGTTGAGTTTGTGTT 58.919 42.857 0.00 0.00 0.00 3.32
246 247 1.732941 TCAGCGTGTTGAGTTTGTGT 58.267 45.000 0.00 0.00 0.00 3.72
247 248 2.159585 TGTTCAGCGTGTTGAGTTTGTG 60.160 45.455 0.00 0.00 0.00 3.33
248 249 2.080693 TGTTCAGCGTGTTGAGTTTGT 58.919 42.857 0.00 0.00 0.00 2.83
250 251 3.840890 TTTGTTCAGCGTGTTGAGTTT 57.159 38.095 0.00 0.00 0.00 2.66
252 253 3.840890 TTTTTGTTCAGCGTGTTGAGT 57.159 38.095 0.00 0.00 0.00 3.41
280 281 5.107875 GCAAACCTTTTCTTTCGCAACTATG 60.108 40.000 0.00 0.00 0.00 2.23
281 282 4.982295 GCAAACCTTTTCTTTCGCAACTAT 59.018 37.500 0.00 0.00 0.00 2.12
282 283 4.356289 GCAAACCTTTTCTTTCGCAACTA 58.644 39.130 0.00 0.00 0.00 2.24
283 284 3.186909 GCAAACCTTTTCTTTCGCAACT 58.813 40.909 0.00 0.00 0.00 3.16
284 285 2.284150 GGCAAACCTTTTCTTTCGCAAC 59.716 45.455 0.00 0.00 0.00 4.17
285 286 2.093973 TGGCAAACCTTTTCTTTCGCAA 60.094 40.909 0.00 0.00 36.63 4.85
286 287 1.478510 TGGCAAACCTTTTCTTTCGCA 59.521 42.857 0.00 0.00 36.63 5.10
287 288 2.127251 CTGGCAAACCTTTTCTTTCGC 58.873 47.619 0.00 0.00 36.63 4.70
290 291 1.836802 TGGCTGGCAAACCTTTTCTTT 59.163 42.857 0.00 0.00 36.63 2.52
291 292 1.413812 CTGGCTGGCAAACCTTTTCTT 59.586 47.619 5.14 0.00 36.63 2.52
292 293 1.043022 CTGGCTGGCAAACCTTTTCT 58.957 50.000 5.14 0.00 36.63 2.52
293 294 0.601046 GCTGGCTGGCAAACCTTTTC 60.601 55.000 5.14 0.00 36.63 2.29
294 295 1.336632 TGCTGGCTGGCAAACCTTTT 61.337 50.000 5.14 0.00 39.43 2.27
297 298 0.682209 CTATGCTGGCTGGCAAACCT 60.682 55.000 5.14 0.00 45.68 3.50
298 299 0.967380 ACTATGCTGGCTGGCAAACC 60.967 55.000 5.14 0.00 45.68 3.27
299 300 0.453390 GACTATGCTGGCTGGCAAAC 59.547 55.000 5.14 1.00 45.68 2.93
300 301 0.038021 TGACTATGCTGGCTGGCAAA 59.962 50.000 5.14 0.00 45.68 3.68
301 302 0.256752 ATGACTATGCTGGCTGGCAA 59.743 50.000 5.14 0.00 45.68 4.52
302 303 0.464916 CATGACTATGCTGGCTGGCA 60.465 55.000 3.18 3.18 46.63 4.92
303 304 0.179037 TCATGACTATGCTGGCTGGC 60.179 55.000 0.00 0.00 34.21 4.85
305 306 3.473625 TGAATCATGACTATGCTGGCTG 58.526 45.455 0.00 0.00 34.21 4.85
306 307 3.390311 TCTGAATCATGACTATGCTGGCT 59.610 43.478 0.00 0.00 34.21 4.75
308 309 5.366460 AGTTCTGAATCATGACTATGCTGG 58.634 41.667 0.00 0.00 34.21 4.85
320 321 9.399797 AGCATCAACATAATTAGTTCTGAATCA 57.600 29.630 0.00 0.00 0.00 2.57
337 338 8.387354 CGAACTTTTGTGTATATAGCATCAACA 58.613 33.333 0.00 0.00 0.00 3.33
338 339 7.373441 GCGAACTTTTGTGTATATAGCATCAAC 59.627 37.037 0.00 0.00 0.00 3.18
339 340 7.279981 AGCGAACTTTTGTGTATATAGCATCAA 59.720 33.333 0.00 0.00 0.00 2.57
340 341 6.761242 AGCGAACTTTTGTGTATATAGCATCA 59.239 34.615 0.00 0.00 0.00 3.07
341 342 7.178712 AGCGAACTTTTGTGTATATAGCATC 57.821 36.000 0.00 0.00 0.00 3.91
342 343 6.074302 CGAGCGAACTTTTGTGTATATAGCAT 60.074 38.462 0.00 0.00 0.00 3.79
343 344 5.231357 CGAGCGAACTTTTGTGTATATAGCA 59.769 40.000 0.00 0.00 0.00 3.49
344 345 5.231568 ACGAGCGAACTTTTGTGTATATAGC 59.768 40.000 0.00 0.00 0.00 2.97
345 346 6.628187 CACGAGCGAACTTTTGTGTATATAG 58.372 40.000 0.00 0.00 0.00 1.31
347 348 4.201685 GCACGAGCGAACTTTTGTGTATAT 60.202 41.667 0.00 0.00 0.00 0.86
348 349 3.122278 GCACGAGCGAACTTTTGTGTATA 59.878 43.478 0.00 0.00 0.00 1.47
349 350 2.096417 GCACGAGCGAACTTTTGTGTAT 60.096 45.455 0.00 0.00 0.00 2.29
351 352 0.027586 GCACGAGCGAACTTTTGTGT 59.972 50.000 0.00 0.00 0.00 3.72
352 353 2.770818 GCACGAGCGAACTTTTGTG 58.229 52.632 0.00 0.00 0.00 3.33
363 364 1.974680 GTTATACGTATCCGCACGAGC 59.025 52.381 12.24 0.00 44.69 5.03
364 365 2.225019 AGGTTATACGTATCCGCACGAG 59.775 50.000 12.24 0.00 44.69 4.18
365 366 2.221169 AGGTTATACGTATCCGCACGA 58.779 47.619 12.24 0.00 44.69 4.35
367 368 3.732721 GTCAAGGTTATACGTATCCGCAC 59.267 47.826 12.24 5.10 37.70 5.34
368 369 3.243501 GGTCAAGGTTATACGTATCCGCA 60.244 47.826 12.24 0.00 37.70 5.69
369 370 3.005155 AGGTCAAGGTTATACGTATCCGC 59.995 47.826 12.24 3.52 37.70 5.54
371 372 4.038883 AGCAGGTCAAGGTTATACGTATCC 59.961 45.833 12.24 8.28 0.00 2.59
372 373 4.982916 CAGCAGGTCAAGGTTATACGTATC 59.017 45.833 12.24 0.00 0.00 2.24
373 374 4.647853 TCAGCAGGTCAAGGTTATACGTAT 59.352 41.667 13.54 13.54 0.00 3.06
374 375 4.018490 TCAGCAGGTCAAGGTTATACGTA 58.982 43.478 0.00 0.00 0.00 3.57
375 376 2.829720 TCAGCAGGTCAAGGTTATACGT 59.170 45.455 0.00 0.00 0.00 3.57
376 377 3.520290 TCAGCAGGTCAAGGTTATACG 57.480 47.619 0.00 0.00 0.00 3.06
381 382 1.064758 TGTGTTCAGCAGGTCAAGGTT 60.065 47.619 0.00 0.00 0.00 3.50
382 383 0.546122 TGTGTTCAGCAGGTCAAGGT 59.454 50.000 0.00 0.00 0.00 3.50
385 386 2.121291 TGTTGTGTTCAGCAGGTCAA 57.879 45.000 0.00 0.00 31.54 3.18
386 387 1.948834 CATGTTGTGTTCAGCAGGTCA 59.051 47.619 0.00 0.00 38.11 4.02
387 388 1.949525 ACATGTTGTGTTCAGCAGGTC 59.050 47.619 0.00 0.00 43.80 3.85
388 389 1.677576 CACATGTTGTGTTCAGCAGGT 59.322 47.619 0.00 0.00 46.87 4.00
389 390 1.001048 CCACATGTTGTGTTCAGCAGG 60.001 52.381 0.00 0.00 46.45 4.85
391 392 1.761449 ACCACATGTTGTGTTCAGCA 58.239 45.000 1.02 0.00 46.45 4.41
401 402 6.180472 CCTCTTAACTATCCAACCACATGTT 58.820 40.000 0.00 0.00 37.80 2.71
402 403 5.339200 CCCTCTTAACTATCCAACCACATGT 60.339 44.000 0.00 0.00 0.00 3.21
403 404 5.126067 CCCTCTTAACTATCCAACCACATG 58.874 45.833 0.00 0.00 0.00 3.21
404 405 4.385310 GCCCTCTTAACTATCCAACCACAT 60.385 45.833 0.00 0.00 0.00 3.21
405 406 3.054655 GCCCTCTTAACTATCCAACCACA 60.055 47.826 0.00 0.00 0.00 4.17
406 407 3.054655 TGCCCTCTTAACTATCCAACCAC 60.055 47.826 0.00 0.00 0.00 4.16
409 410 4.192317 CACTGCCCTCTTAACTATCCAAC 58.808 47.826 0.00 0.00 0.00 3.77
410 411 3.199946 CCACTGCCCTCTTAACTATCCAA 59.800 47.826 0.00 0.00 0.00 3.53
413 414 5.810080 ATACCACTGCCCTCTTAACTATC 57.190 43.478 0.00 0.00 0.00 2.08
414 415 6.440965 GGATATACCACTGCCCTCTTAACTAT 59.559 42.308 0.00 0.00 38.79 2.12
415 416 5.778750 GGATATACCACTGCCCTCTTAACTA 59.221 44.000 0.00 0.00 38.79 2.24
416 417 4.593634 GGATATACCACTGCCCTCTTAACT 59.406 45.833 0.00 0.00 38.79 2.24
417 418 4.347000 TGGATATACCACTGCCCTCTTAAC 59.653 45.833 0.00 0.00 44.64 2.01
418 419 4.562767 TGGATATACCACTGCCCTCTTAA 58.437 43.478 0.00 0.00 44.64 1.85
419 420 4.160329 CTGGATATACCACTGCCCTCTTA 58.840 47.826 0.00 0.00 44.64 2.10
420 421 2.975489 CTGGATATACCACTGCCCTCTT 59.025 50.000 0.00 0.00 44.64 2.85
421 422 2.090494 ACTGGATATACCACTGCCCTCT 60.090 50.000 0.00 0.00 44.64 3.69
422 423 2.330216 ACTGGATATACCACTGCCCTC 58.670 52.381 0.00 0.00 44.64 4.30
423 424 2.496679 ACTGGATATACCACTGCCCT 57.503 50.000 0.00 0.00 44.64 5.19
424 425 2.969950 TGTACTGGATATACCACTGCCC 59.030 50.000 0.00 0.00 44.64 5.36
425 426 4.283467 TGATGTACTGGATATACCACTGCC 59.717 45.833 0.00 0.00 44.64 4.85
427 428 6.997655 ACATGATGTACTGGATATACCACTG 58.002 40.000 0.00 0.00 44.64 3.66
428 429 7.618019 AACATGATGTACTGGATATACCACT 57.382 36.000 0.00 0.00 44.64 4.00
431 432 7.680730 AGGAAACATGATGTACTGGATATACC 58.319 38.462 0.00 0.00 39.54 2.73
433 434 9.822727 TCTAGGAAACATGATGTACTGGATATA 57.177 33.333 0.00 0.00 0.00 0.86
434 435 8.589338 GTCTAGGAAACATGATGTACTGGATAT 58.411 37.037 0.00 0.00 0.00 1.63
436 437 6.613271 AGTCTAGGAAACATGATGTACTGGAT 59.387 38.462 0.00 0.00 0.00 3.41
437 438 5.958380 AGTCTAGGAAACATGATGTACTGGA 59.042 40.000 0.00 2.87 0.00 3.86
438 439 6.227298 AGTCTAGGAAACATGATGTACTGG 57.773 41.667 0.00 0.41 0.00 4.00
439 440 7.276658 GTGAAGTCTAGGAAACATGATGTACTG 59.723 40.741 0.00 0.00 0.00 2.74
440 441 7.039011 TGTGAAGTCTAGGAAACATGATGTACT 60.039 37.037 0.00 0.55 0.00 2.73
441 442 7.097192 TGTGAAGTCTAGGAAACATGATGTAC 58.903 38.462 0.00 0.00 0.00 2.90
442 443 7.239763 TGTGAAGTCTAGGAAACATGATGTA 57.760 36.000 0.00 0.00 0.00 2.29
443 444 6.114187 TGTGAAGTCTAGGAAACATGATGT 57.886 37.500 0.00 0.00 0.00 3.06
444 445 7.414873 CCAATGTGAAGTCTAGGAAACATGATG 60.415 40.741 0.00 0.00 0.00 3.07
446 447 5.939883 CCAATGTGAAGTCTAGGAAACATGA 59.060 40.000 0.00 0.00 0.00 3.07
450 451 5.613358 CACCAATGTGAAGTCTAGGAAAC 57.387 43.478 0.00 0.00 45.76 2.78
463 464 7.993101 ACAAGATTAATGAGATCACCAATGTG 58.007 34.615 0.00 0.00 44.18 3.21
464 465 9.857656 ATACAAGATTAATGAGATCACCAATGT 57.142 29.630 0.00 0.00 0.00 2.71
482 483 8.352942 GCCGGAATTCTGAAATAAATACAAGAT 58.647 33.333 16.17 0.00 0.00 2.40
483 484 7.466725 CGCCGGAATTCTGAAATAAATACAAGA 60.467 37.037 16.17 0.00 0.00 3.02
484 485 6.632834 CGCCGGAATTCTGAAATAAATACAAG 59.367 38.462 16.17 0.00 0.00 3.16
485 486 6.316640 TCGCCGGAATTCTGAAATAAATACAA 59.683 34.615 16.17 0.00 0.00 2.41
486 487 5.818336 TCGCCGGAATTCTGAAATAAATACA 59.182 36.000 16.17 0.00 0.00 2.29
487 488 6.295039 TCGCCGGAATTCTGAAATAAATAC 57.705 37.500 16.17 0.00 0.00 1.89
488 489 8.786826 ATATCGCCGGAATTCTGAAATAAATA 57.213 30.769 16.17 5.35 0.00 1.40
490 491 7.504924 AATATCGCCGGAATTCTGAAATAAA 57.495 32.000 16.17 0.00 0.00 1.40
491 492 6.128661 CGAATATCGCCGGAATTCTGAAATAA 60.129 38.462 16.17 0.00 31.14 1.40
492 493 5.347635 CGAATATCGCCGGAATTCTGAAATA 59.652 40.000 16.17 9.98 31.14 1.40
493 494 4.152402 CGAATATCGCCGGAATTCTGAAAT 59.848 41.667 16.17 8.23 31.14 2.17
494 495 3.493129 CGAATATCGCCGGAATTCTGAAA 59.507 43.478 16.17 1.03 31.14 2.69
495 496 3.057019 CGAATATCGCCGGAATTCTGAA 58.943 45.455 16.17 1.39 31.14 3.02
496 497 2.035449 ACGAATATCGCCGGAATTCTGA 59.965 45.455 16.17 4.48 45.12 3.27
497 498 2.404215 ACGAATATCGCCGGAATTCTG 58.596 47.619 5.05 7.35 45.12 3.02
498 499 2.814280 ACGAATATCGCCGGAATTCT 57.186 45.000 5.05 0.00 45.12 2.40
500 501 4.210537 CACTAAACGAATATCGCCGGAATT 59.789 41.667 5.05 0.00 45.12 2.17
501 502 3.739300 CACTAAACGAATATCGCCGGAAT 59.261 43.478 5.05 0.00 45.12 3.01
502 503 3.117794 CACTAAACGAATATCGCCGGAA 58.882 45.455 5.05 0.00 45.12 4.30
503 504 2.544277 CCACTAAACGAATATCGCCGGA 60.544 50.000 5.05 0.00 45.12 5.14
505 506 1.790623 CCCACTAAACGAATATCGCCG 59.209 52.381 0.00 0.00 45.12 6.46
506 507 3.102052 TCCCACTAAACGAATATCGCC 57.898 47.619 0.00 0.00 45.12 5.54
508 509 5.629849 GTCTCATCCCACTAAACGAATATCG 59.370 44.000 0.00 0.00 46.93 2.92
510 511 5.068723 ACGTCTCATCCCACTAAACGAATAT 59.931 40.000 0.00 0.00 33.25 1.28
511 512 4.400251 ACGTCTCATCCCACTAAACGAATA 59.600 41.667 0.00 0.00 33.25 1.75
512 513 3.194968 ACGTCTCATCCCACTAAACGAAT 59.805 43.478 0.00 0.00 33.25 3.34
513 514 2.559668 ACGTCTCATCCCACTAAACGAA 59.440 45.455 0.00 0.00 33.25 3.85
514 515 2.163010 GACGTCTCATCCCACTAAACGA 59.837 50.000 8.70 0.00 33.25 3.85
516 517 2.889852 GGACGTCTCATCCCACTAAAC 58.110 52.381 16.46 0.00 0.00 2.01
533 534 1.078759 CATCTCGCAGTCAACGGGAC 61.079 60.000 1.62 1.62 43.97 4.46
534 535 1.215382 CATCTCGCAGTCAACGGGA 59.785 57.895 0.00 0.00 45.49 5.14
535 536 2.456119 GCATCTCGCAGTCAACGGG 61.456 63.158 0.00 0.00 41.79 5.28
536 537 2.456119 GGCATCTCGCAGTCAACGG 61.456 63.158 0.00 0.00 45.17 4.44
537 538 1.446792 AGGCATCTCGCAGTCAACG 60.447 57.895 0.00 0.00 45.17 4.10
538 539 1.975363 GCAGGCATCTCGCAGTCAAC 61.975 60.000 0.00 0.00 45.17 3.18
539 540 1.742880 GCAGGCATCTCGCAGTCAA 60.743 57.895 0.00 0.00 45.17 3.18
541 542 3.260483 CGCAGGCATCTCGCAGTC 61.260 66.667 0.00 0.00 45.17 3.51
542 543 4.827087 CCGCAGGCATCTCGCAGT 62.827 66.667 0.00 0.00 46.14 4.40
554 555 4.151689 TGAGATTTTTCGAAGTTACCGCAG 59.848 41.667 0.00 0.00 0.00 5.18
555 556 4.059511 TGAGATTTTTCGAAGTTACCGCA 58.940 39.130 0.00 0.00 0.00 5.69
558 559 9.152595 AGTATCTTGAGATTTTTCGAAGTTACC 57.847 33.333 0.00 0.00 36.05 2.85
564 565 9.020813 CGTCATAGTATCTTGAGATTTTTCGAA 57.979 33.333 0.00 0.00 36.05 3.71
565 566 7.648112 CCGTCATAGTATCTTGAGATTTTTCGA 59.352 37.037 0.00 0.00 36.05 3.71
568 569 7.275920 AGCCGTCATAGTATCTTGAGATTTTT 58.724 34.615 0.00 0.00 36.05 1.94
569 570 6.821388 AGCCGTCATAGTATCTTGAGATTTT 58.179 36.000 0.00 0.00 36.05 1.82
570 571 6.040955 TGAGCCGTCATAGTATCTTGAGATTT 59.959 38.462 0.00 0.00 36.05 2.17
571 572 5.536538 TGAGCCGTCATAGTATCTTGAGATT 59.463 40.000 0.00 0.00 36.05 2.40
572 573 5.073428 TGAGCCGTCATAGTATCTTGAGAT 58.927 41.667 0.00 0.00 38.51 2.75
573 574 4.461198 TGAGCCGTCATAGTATCTTGAGA 58.539 43.478 0.00 0.00 0.00 3.27
574 575 4.277174 ACTGAGCCGTCATAGTATCTTGAG 59.723 45.833 0.00 0.00 30.18 3.02
575 576 4.207955 ACTGAGCCGTCATAGTATCTTGA 58.792 43.478 0.00 0.00 30.18 3.02
577 578 4.465886 AGACTGAGCCGTCATAGTATCTT 58.534 43.478 1.91 0.00 36.38 2.40
578 579 4.069304 GAGACTGAGCCGTCATAGTATCT 58.931 47.826 0.00 0.00 36.38 1.98
580 581 4.093472 AGAGACTGAGCCGTCATAGTAT 57.907 45.455 1.91 0.00 36.38 2.12
581 582 3.562343 AGAGACTGAGCCGTCATAGTA 57.438 47.619 1.91 0.00 36.38 1.82
583 584 2.685388 TCAAGAGACTGAGCCGTCATAG 59.315 50.000 1.91 0.00 36.38 2.23
584 585 2.723273 TCAAGAGACTGAGCCGTCATA 58.277 47.619 1.91 0.00 36.38 2.15
585 586 1.550327 TCAAGAGACTGAGCCGTCAT 58.450 50.000 1.91 0.00 36.38 3.06
587 588 1.403514 CCTTCAAGAGACTGAGCCGTC 60.404 57.143 0.00 0.00 0.00 4.79
588 589 0.605589 CCTTCAAGAGACTGAGCCGT 59.394 55.000 0.00 0.00 0.00 5.68
589 590 0.605589 ACCTTCAAGAGACTGAGCCG 59.394 55.000 0.00 0.00 0.00 5.52
591 592 3.608316 ATCACCTTCAAGAGACTGAGC 57.392 47.619 0.00 0.00 0.00 4.26
592 593 8.231692 TCTATAATCACCTTCAAGAGACTGAG 57.768 38.462 0.00 0.00 0.00 3.35
593 594 8.055790 TCTCTATAATCACCTTCAAGAGACTGA 58.944 37.037 0.00 0.00 33.32 3.41
594 595 8.231692 TCTCTATAATCACCTTCAAGAGACTG 57.768 38.462 0.00 0.00 33.32 3.51
596 597 9.474920 CAATCTCTATAATCACCTTCAAGAGAC 57.525 37.037 1.54 0.00 37.54 3.36
597 598 8.646004 CCAATCTCTATAATCACCTTCAAGAGA 58.354 37.037 0.00 0.00 38.36 3.10
598 599 8.646004 TCCAATCTCTATAATCACCTTCAAGAG 58.354 37.037 0.00 0.00 31.59 2.85
599 600 8.553085 TCCAATCTCTATAATCACCTTCAAGA 57.447 34.615 0.00 0.00 0.00 3.02
600 601 9.217278 CATCCAATCTCTATAATCACCTTCAAG 57.783 37.037 0.00 0.00 0.00 3.02
602 603 8.152898 CACATCCAATCTCTATAATCACCTTCA 58.847 37.037 0.00 0.00 0.00 3.02
603 604 7.118971 GCACATCCAATCTCTATAATCACCTTC 59.881 40.741 0.00 0.00 0.00 3.46
604 605 6.939163 GCACATCCAATCTCTATAATCACCTT 59.061 38.462 0.00 0.00 0.00 3.50
605 606 6.471146 GCACATCCAATCTCTATAATCACCT 58.529 40.000 0.00 0.00 0.00 4.00
606 607 5.349817 CGCACATCCAATCTCTATAATCACC 59.650 44.000 0.00 0.00 0.00 4.02
607 608 5.928839 ACGCACATCCAATCTCTATAATCAC 59.071 40.000 0.00 0.00 0.00 3.06
608 609 5.928264 CACGCACATCCAATCTCTATAATCA 59.072 40.000 0.00 0.00 0.00 2.57
610 611 5.698089 CACACGCACATCCAATCTCTATAAT 59.302 40.000 0.00 0.00 0.00 1.28
611 612 5.049828 CACACGCACATCCAATCTCTATAA 58.950 41.667 0.00 0.00 0.00 0.98
612 613 4.099419 ACACACGCACATCCAATCTCTATA 59.901 41.667 0.00 0.00 0.00 1.31
613 614 3.118629 ACACACGCACATCCAATCTCTAT 60.119 43.478 0.00 0.00 0.00 1.98
614 615 2.233676 ACACACGCACATCCAATCTCTA 59.766 45.455 0.00 0.00 0.00 2.43
616 617 1.129251 CACACACGCACATCCAATCTC 59.871 52.381 0.00 0.00 0.00 2.75
617 618 1.159285 CACACACGCACATCCAATCT 58.841 50.000 0.00 0.00 0.00 2.40
618 619 0.454957 GCACACACGCACATCCAATC 60.455 55.000 0.00 0.00 0.00 2.67
619 620 1.171549 TGCACACACGCACATCCAAT 61.172 50.000 0.00 0.00 36.86 3.16
620 621 1.171549 ATGCACACACGCACATCCAA 61.172 50.000 0.00 0.00 46.56 3.53
621 622 1.171549 AATGCACACACGCACATCCA 61.172 50.000 0.00 0.00 46.56 3.41
624 625 0.883153 ATGAATGCACACACGCACAT 59.117 45.000 0.00 0.00 46.56 3.21
626 627 2.508867 CTTATGAATGCACACACGCAC 58.491 47.619 0.00 0.00 46.56 5.34
628 629 1.202177 CCCTTATGAATGCACACACGC 60.202 52.381 0.00 0.00 0.00 5.34
629 630 2.083774 ACCCTTATGAATGCACACACG 58.916 47.619 0.00 0.00 0.00 4.49
630 631 2.164219 CCACCCTTATGAATGCACACAC 59.836 50.000 0.00 0.00 0.00 3.82
631 632 2.445427 CCACCCTTATGAATGCACACA 58.555 47.619 0.00 0.00 0.00 3.72
632 633 1.750778 CCCACCCTTATGAATGCACAC 59.249 52.381 0.00 0.00 0.00 3.82
633 634 1.357420 ACCCACCCTTATGAATGCACA 59.643 47.619 0.00 0.00 0.00 4.57
634 635 1.750778 CACCCACCCTTATGAATGCAC 59.249 52.381 0.00 0.00 0.00 4.57
635 636 1.357420 ACACCCACCCTTATGAATGCA 59.643 47.619 0.00 0.00 0.00 3.96
636 637 2.143876 ACACCCACCCTTATGAATGC 57.856 50.000 0.00 0.00 0.00 3.56
637 638 6.187727 AGTATACACCCACCCTTATGAATG 57.812 41.667 5.50 0.00 0.00 2.67
638 639 5.011738 CGAGTATACACCCACCCTTATGAAT 59.988 44.000 5.50 0.00 0.00 2.57
639 640 4.342951 CGAGTATACACCCACCCTTATGAA 59.657 45.833 5.50 0.00 0.00 2.57
640 641 3.893200 CGAGTATACACCCACCCTTATGA 59.107 47.826 5.50 0.00 0.00 2.15
642 643 3.640029 CACGAGTATACACCCACCCTTAT 59.360 47.826 5.50 0.00 0.00 1.73
643 644 3.025978 CACGAGTATACACCCACCCTTA 58.974 50.000 5.50 0.00 0.00 2.69
644 645 1.829222 CACGAGTATACACCCACCCTT 59.171 52.381 5.50 0.00 0.00 3.95
645 646 1.272872 ACACGAGTATACACCCACCCT 60.273 52.381 5.50 0.00 0.00 4.34
646 647 1.188863 ACACGAGTATACACCCACCC 58.811 55.000 5.50 0.00 0.00 4.61
647 648 2.223340 CGTACACGAGTATACACCCACC 60.223 54.545 5.50 0.00 43.02 4.61
648 649 2.420022 ACGTACACGAGTATACACCCAC 59.580 50.000 9.04 0.00 43.02 4.61
649 650 2.419673 CACGTACACGAGTATACACCCA 59.580 50.000 9.04 0.00 43.02 4.51
652 653 5.450385 GTCATTCACGTACACGAGTATACAC 59.550 44.000 9.04 0.00 43.02 2.90
653 654 5.352293 AGTCATTCACGTACACGAGTATACA 59.648 40.000 9.04 0.00 43.02 2.29
655 656 6.426980 AAGTCATTCACGTACACGAGTATA 57.573 37.500 9.04 0.00 43.02 1.47
656 657 4.959596 AGTCATTCACGTACACGAGTAT 57.040 40.909 9.04 0.00 43.02 2.12
657 658 4.667415 CGAAGTCATTCACGTACACGAGTA 60.667 45.833 9.04 0.00 43.39 2.59
658 659 3.562505 GAAGTCATTCACGTACACGAGT 58.437 45.455 9.04 0.00 43.39 4.18
659 660 2.588539 CGAAGTCATTCACGTACACGAG 59.411 50.000 9.04 0.23 43.39 4.18
660 661 2.223845 TCGAAGTCATTCACGTACACGA 59.776 45.455 9.04 0.00 43.39 4.35
710 5788 1.077212 AGCCACAGGTGCATCCATC 60.077 57.895 0.00 0.00 39.02 3.51
714 5792 2.338015 CCACAGCCACAGGTGCATC 61.338 63.158 0.00 0.00 45.66 3.91
728 5806 3.060736 TCGCTTAGGTTTAATGCCACA 57.939 42.857 0.33 0.00 0.00 4.17
730 5808 3.945346 TCTTCGCTTAGGTTTAATGCCA 58.055 40.909 0.33 0.00 0.00 4.92
731 5809 5.526111 TGTATCTTCGCTTAGGTTTAATGCC 59.474 40.000 0.00 0.00 0.00 4.40
732 5810 6.598753 TGTATCTTCGCTTAGGTTTAATGC 57.401 37.500 0.00 0.00 0.00 3.56
733 5811 7.117454 CGTTGTATCTTCGCTTAGGTTTAATG 58.883 38.462 0.00 0.00 0.00 1.90
734 5812 6.238022 GCGTTGTATCTTCGCTTAGGTTTAAT 60.238 38.462 0.00 0.00 45.29 1.40
735 5813 5.062558 GCGTTGTATCTTCGCTTAGGTTTAA 59.937 40.000 0.00 0.00 45.29 1.52
776 5854 4.451900 ATCGAGATAATCGGTTTGCCTTT 58.548 39.130 0.00 0.00 44.13 3.11
865 5943 2.146724 TGTGGGTGGGTGGAGTCAG 61.147 63.158 0.00 0.00 0.00 3.51
915 5993 0.388520 TCGATGTGTTCTGCGTCCAG 60.389 55.000 0.00 0.00 40.54 3.86
918 5996 1.419374 AACTCGATGTGTTCTGCGTC 58.581 50.000 0.00 0.00 0.00 5.19
935 6013 5.238214 GGATTGATGAAGCTGATGGAGTAAC 59.762 44.000 0.00 0.00 0.00 2.50
989 6068 0.037697 TGAACGGGTGAAGGTGATCG 60.038 55.000 0.00 0.00 0.00 3.69
1009 6091 1.669115 GCTTGCAGAACTCAGGCGA 60.669 57.895 0.00 0.00 0.00 5.54
1012 6094 2.684843 GCCGCTTGCAGAACTCAGG 61.685 63.158 0.00 0.00 40.77 3.86
1056 6140 1.154169 GTCGACATACGTCCGTGCA 60.154 57.895 11.55 0.00 43.13 4.57
1092 6176 4.477975 CGGGTGTCCTCGACGAGC 62.478 72.222 19.55 7.41 34.95 5.03
1131 6215 2.044555 CGCAGTCGTACCTGGGAGA 61.045 63.158 9.64 0.00 45.43 3.71
1178 6271 2.289694 CGGTCAGTGGAAATTCAGTCCT 60.290 50.000 0.00 0.00 36.03 3.85
1210 6303 1.685302 CTTTGCACACACGCATAACC 58.315 50.000 0.00 0.00 42.62 2.85
1270 6366 2.524394 ATCCTCAGCCGGCCGTAT 60.524 61.111 26.15 9.27 0.00 3.06
1504 6606 1.805869 GCTTCTTCTCTTCTGCAGCA 58.194 50.000 9.47 0.00 0.00 4.41
1505 6607 0.720590 CGCTTCTTCTCTTCTGCAGC 59.279 55.000 9.47 0.00 0.00 5.25
1506 6608 0.720590 GCGCTTCTTCTCTTCTGCAG 59.279 55.000 7.63 7.63 0.00 4.41
1507 6609 0.671781 GGCGCTTCTTCTCTTCTGCA 60.672 55.000 7.64 0.00 0.00 4.41
1724 6847 1.206132 CCACCTGTACCGAGCATACAA 59.794 52.381 0.00 0.00 32.27 2.41
1923 7071 9.607988 ATGTACAAGAACCGATTGATTATGTAA 57.392 29.630 0.00 0.00 0.00 2.41
1928 7076 7.659799 CCCATATGTACAAGAACCGATTGATTA 59.340 37.037 0.00 0.00 0.00 1.75
2035 7186 8.433421 TTTCGTAGATTGTTTCAAGTTCTTCT 57.567 30.769 0.00 0.00 35.04 2.85
2099 7251 9.124807 GATTTAACAATCTCGTTACCAAAAAGG 57.875 33.333 0.00 0.00 38.69 3.11
2114 7266 8.800031 GTCTTAGTCGACTGAGATTTAACAATC 58.200 37.037 34.18 18.89 40.13 2.67
2141 7293 7.615582 AAAGCATCGACTGAGAATTGATTAA 57.384 32.000 0.00 0.00 0.00 1.40
2165 7317 9.971922 CGCCACATAAGATCTCATGAATATATA 57.028 33.333 13.09 0.00 0.00 0.86
2166 7318 8.699130 TCGCCACATAAGATCTCATGAATATAT 58.301 33.333 13.09 0.00 0.00 0.86
2176 7328 2.029828 ACGGATCGCCACATAAGATCTC 60.030 50.000 0.00 0.00 40.28 2.75
2267 7419 8.697292 GGTCTGGTTAGATCTTAGTCAACTAAT 58.303 37.037 0.00 0.00 35.29 1.73
2269 7421 6.606395 GGGTCTGGTTAGATCTTAGTCAACTA 59.394 42.308 0.00 0.00 34.35 2.24
2273 7425 5.208294 AGGGTCTGGTTAGATCTTAGTCA 57.792 43.478 0.00 0.00 34.35 3.41
2274 7426 6.547930 AAAGGGTCTGGTTAGATCTTAGTC 57.452 41.667 0.00 0.00 34.35 2.59
2278 7430 4.923415 CCAAAAGGGTCTGGTTAGATCTT 58.077 43.478 0.00 0.00 34.35 2.40
2279 7431 4.576330 CCAAAAGGGTCTGGTTAGATCT 57.424 45.455 0.00 0.00 34.35 2.75
2307 7459 7.116075 AGCAATTCACAATTATATGCACCTT 57.884 32.000 0.00 0.00 0.00 3.50
2328 7480 2.563179 GGATTAGGAGCGGATAGAAGCA 59.437 50.000 0.00 0.00 35.48 3.91
2346 7498 1.062962 CCTATGGCCTTGTTTGGGGAT 60.063 52.381 3.32 0.00 0.00 3.85
2361 7513 2.158900 ACAGATTCGCTTGTCCCCTATG 60.159 50.000 0.00 0.00 0.00 2.23
2365 7517 1.087501 GAACAGATTCGCTTGTCCCC 58.912 55.000 0.00 0.00 0.00 4.81
2375 7527 4.202131 CGGGAGTAAGGGTAGAACAGATTC 60.202 50.000 0.00 0.00 34.78 2.52
2376 7528 3.705072 CGGGAGTAAGGGTAGAACAGATT 59.295 47.826 0.00 0.00 0.00 2.40
2377 7529 3.297736 CGGGAGTAAGGGTAGAACAGAT 58.702 50.000 0.00 0.00 0.00 2.90
2378 7530 2.622452 CCGGGAGTAAGGGTAGAACAGA 60.622 54.545 0.00 0.00 0.00 3.41
2391 7547 0.543410 TGCAGTCTTTCCCGGGAGTA 60.543 55.000 25.26 15.11 0.00 2.59
2392 7548 1.831652 CTGCAGTCTTTCCCGGGAGT 61.832 60.000 25.26 1.55 0.00 3.85
2393 7549 1.078848 CTGCAGTCTTTCCCGGGAG 60.079 63.158 25.26 13.89 0.00 4.30
2394 7550 2.592993 CCTGCAGTCTTTCCCGGGA 61.593 63.158 22.63 22.63 0.00 5.14
2400 7556 0.540597 AAAGGGGCCTGCAGTCTTTC 60.541 55.000 13.81 0.00 0.00 2.62
2401 7557 0.540597 GAAAGGGGCCTGCAGTCTTT 60.541 55.000 13.81 15.33 0.00 2.52
2402 7558 1.075659 GAAAGGGGCCTGCAGTCTT 59.924 57.895 13.81 7.87 0.00 3.01
2417 7573 2.047061 CGGGGTGATAGATGGAGGAAA 58.953 52.381 0.00 0.00 0.00 3.13
2419 7575 0.178932 CCGGGGTGATAGATGGAGGA 60.179 60.000 0.00 0.00 0.00 3.71
2432 7588 3.331293 CCCTTCTATTGCCGGGGT 58.669 61.111 2.18 0.00 32.91 4.95
2434 7590 2.203351 GCCCCTTCTATTGCCGGG 60.203 66.667 2.18 0.00 36.78 5.73
2464 7621 5.770919 ACCCTACTACTACCGGACTAAATT 58.229 41.667 9.46 0.00 0.00 1.82
2470 7627 4.423625 TCTAACCCTACTACTACCGGAC 57.576 50.000 9.46 0.00 0.00 4.79
2471 7628 5.450818 TTTCTAACCCTACTACTACCGGA 57.549 43.478 9.46 0.00 0.00 5.14
2519 7676 2.436646 CCATCACCTCGCCACCAC 60.437 66.667 0.00 0.00 0.00 4.16
2523 7680 4.408821 GGCACCATCACCTCGCCA 62.409 66.667 0.00 0.00 42.50 5.69
2524 7681 3.704231 ATGGCACCATCACCTCGCC 62.704 63.158 0.00 0.00 43.28 5.54
2541 7698 3.464833 AGAGACCTTATTCCATGCCCAAT 59.535 43.478 0.00 0.00 0.00 3.16
2542 7699 2.852449 AGAGACCTTATTCCATGCCCAA 59.148 45.455 0.00 0.00 0.00 4.12
2543 7700 2.439507 GAGAGACCTTATTCCATGCCCA 59.560 50.000 0.00 0.00 0.00 5.36
2548 7705 3.663198 AGGCAGAGAGACCTTATTCCAT 58.337 45.455 0.00 0.00 29.74 3.41
2575 7732 1.339610 CGAGGAAGCATCTCCGAATCT 59.660 52.381 0.00 0.00 40.75 2.40
2602 7759 2.777692 AGACCTGTTTCTCAACCTTCCA 59.222 45.455 0.00 0.00 31.02 3.53
2609 7766 4.991056 CGAAGAATCAGACCTGTTTCTCAA 59.009 41.667 18.32 0.00 44.38 3.02
2612 7769 4.322349 CCTCGAAGAATCAGACCTGTTTCT 60.322 45.833 14.36 14.36 46.03 2.52
2630 7787 3.524648 AAGAAAACGCCGGCCTCGA 62.525 57.895 23.46 0.00 39.00 4.04
2635 7792 2.729491 GCACAAGAAAACGCCGGC 60.729 61.111 19.07 19.07 0.00 6.13
2649 7806 0.517316 GGGTCGAGACAAACATGCAC 59.483 55.000 5.55 0.00 0.00 4.57
2651 7808 2.000447 GTAGGGTCGAGACAAACATGC 59.000 52.381 5.55 0.00 0.00 4.06
2665 7822 4.202695 GGAGGACATATAGGACAGTAGGGT 60.203 50.000 0.00 0.00 0.00 4.34
2666 7823 4.202684 TGGAGGACATATAGGACAGTAGGG 60.203 50.000 0.00 0.00 0.00 3.53
2668 7825 6.071984 AGTTGGAGGACATATAGGACAGTAG 58.928 44.000 0.00 0.00 0.00 2.57
2670 7827 4.884961 AGTTGGAGGACATATAGGACAGT 58.115 43.478 0.00 0.00 0.00 3.55
2679 7836 4.956700 CCAGAACTCTAGTTGGAGGACATA 59.043 45.833 0.00 0.00 38.56 2.29
2680 7837 3.772025 CCAGAACTCTAGTTGGAGGACAT 59.228 47.826 0.00 0.00 38.56 3.06
2690 7848 1.629043 TTGTCGGCCAGAACTCTAGT 58.371 50.000 2.24 0.00 0.00 2.57
2694 7852 1.594331 AACTTTGTCGGCCAGAACTC 58.406 50.000 2.24 0.00 0.00 3.01
2702 7860 3.335579 AGACTATCCAAACTTTGTCGGC 58.664 45.455 0.88 0.00 0.00 5.54
2707 7865 2.678336 GGCCGAGACTATCCAAACTTTG 59.322 50.000 0.00 0.00 0.00 2.77
2718 7876 1.528542 CCCGATGAGGCCGAGACTA 60.529 63.158 0.00 0.00 39.21 2.59
2726 7884 0.605589 CTCAGATACCCCGATGAGGC 59.394 60.000 0.00 0.00 39.21 4.70
2733 7891 3.543680 ACACAAATCTCAGATACCCCG 57.456 47.619 0.00 0.00 0.00 5.73
2742 7900 7.055667 ACAGAGTTAGAGAACACAAATCTCA 57.944 36.000 6.35 0.00 44.64 3.27
2789 7947 2.519771 TGTACGAGAGGGCCTCTAAA 57.480 50.000 35.17 20.33 41.35 1.85
2790 7948 2.750141 ATGTACGAGAGGGCCTCTAA 57.250 50.000 35.17 20.69 41.35 2.10
2791 7949 2.750141 AATGTACGAGAGGGCCTCTA 57.250 50.000 35.17 20.29 41.35 2.43
2804 7962 3.007635 CACCCCGAGGAAGAAAATGTAC 58.992 50.000 0.00 0.00 36.73 2.90
2817 7975 1.108776 TAGGAAATCGTCACCCCGAG 58.891 55.000 0.00 0.00 40.68 4.63
2844 8002 7.850982 GCTGAGTGTCATTTTATAATAACCACG 59.149 37.037 0.00 0.00 0.00 4.94
2854 8012 4.034858 CGCATCAGCTGAGTGTCATTTTAT 59.965 41.667 22.96 0.00 39.10 1.40
2863 8021 1.366679 ACAATCGCATCAGCTGAGTG 58.633 50.000 22.96 19.37 41.49 3.51
2870 8028 2.931969 TGAAGCACTACAATCGCATCAG 59.068 45.455 0.00 0.00 30.62 2.90
2881 8039 7.755582 ACAAAAGTTCAAATTGAAGCACTAC 57.244 32.000 8.88 0.00 37.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.