Multiple sequence alignment - TraesCS4B01G271700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G271700 chr4B 100.000 5804 0 0 1 5804 548106666 548100863 0.000000e+00 10719.0
1 TraesCS4B01G271700 chr4B 85.154 586 69 10 2095 2667 547579398 547578818 8.380000e-163 584.0
2 TraesCS4B01G271700 chr4B 81.197 117 19 3 3330 3445 72975236 72975350 2.230000e-14 91.6
3 TraesCS4B01G271700 chr4D 90.766 2090 99 46 1 2051 441640220 441638186 0.000000e+00 2704.0
4 TraesCS4B01G271700 chr4D 88.771 2066 184 24 2096 4133 441638183 441636138 0.000000e+00 2486.0
5 TraesCS4B01G271700 chr4D 85.545 1605 132 39 4257 5802 441636139 441634576 0.000000e+00 1587.0
6 TraesCS4B01G271700 chr4D 82.659 1113 169 10 928 2021 441494724 441493617 0.000000e+00 965.0
7 TraesCS4B01G271700 chr4D 84.394 660 83 11 2095 2740 441513610 441512957 1.060000e-176 630.0
8 TraesCS4B01G271700 chr4D 87.079 534 64 5 934 1464 441514851 441514320 2.990000e-167 599.0
9 TraesCS4B01G271700 chr4A 92.672 1774 94 25 293 2040 25802231 25803994 0.000000e+00 2523.0
10 TraesCS4B01G271700 chr4A 91.845 1214 77 9 2118 3313 25804104 25805313 0.000000e+00 1674.0
11 TraesCS4B01G271700 chr4A 85.316 1614 144 42 4257 5804 25806717 25808303 0.000000e+00 1581.0
12 TraesCS4B01G271700 chr4A 84.244 1098 161 12 928 2016 26012550 26013644 0.000000e+00 1059.0
13 TraesCS4B01G271700 chr4A 81.108 1101 185 9 939 2021 26064743 26065838 0.000000e+00 859.0
14 TraesCS4B01G271700 chr4A 82.882 701 111 7 3441 4133 25806019 25806718 6.390000e-174 621.0
15 TraesCS4B01G271700 chr4A 87.248 298 28 9 1 291 25801868 25802162 1.210000e-86 331.0
16 TraesCS4B01G271700 chr2A 79.406 1112 194 24 929 2021 705527889 705526794 0.000000e+00 752.0
17 TraesCS4B01G271700 chr2A 81.988 855 113 27 2095 2923 705526801 705525962 0.000000e+00 688.0
18 TraesCS4B01G271700 chr2A 88.764 89 6 1 2012 2096 694471444 694471532 7.950000e-19 106.0
19 TraesCS4B01G271700 chr2B 82.800 843 116 20 2095 2923 676193591 676192764 0.000000e+00 726.0
20 TraesCS4B01G271700 chr2B 79.057 1103 193 21 937 2021 676680330 676679248 0.000000e+00 723.0
21 TraesCS4B01G271700 chr2B 78.546 1114 197 22 929 2021 676477837 676476745 0.000000e+00 695.0
22 TraesCS4B01G271700 chr2B 82.878 695 86 18 2095 2764 676589855 676589169 1.390000e-165 593.0
23 TraesCS4B01G271700 chr2D 81.395 817 106 31 2095 2875 564702386 564701580 4.940000e-175 625.0
24 TraesCS4B01G271700 chr2D 83.261 693 85 18 2095 2764 564922507 564921823 4.970000e-170 608.0
25 TraesCS4B01G271700 chr2D 93.893 131 8 0 4132 4262 340252868 340252738 1.280000e-46 198.0
26 TraesCS4B01G271700 chr3D 92.199 141 10 1 4126 4265 280386968 280387108 1.280000e-46 198.0
27 TraesCS4B01G271700 chr3D 92.199 141 10 1 4126 4265 365000963 365000823 1.280000e-46 198.0
28 TraesCS4B01G271700 chr3D 93.233 133 9 0 4132 4264 371366889 371367021 4.590000e-46 196.0
29 TraesCS4B01G271700 chr3D 81.081 185 31 3 3314 3495 80919483 80919666 1.690000e-30 145.0
30 TraesCS4B01G271700 chr1D 94.531 128 7 0 4132 4259 55657990 55657863 1.280000e-46 198.0
31 TraesCS4B01G271700 chr1D 87.778 90 8 2 2014 2103 164421624 164421710 1.030000e-17 102.0
32 TraesCS4B01G271700 chr1B 92.199 141 10 1 4132 4271 683747960 683748100 1.280000e-46 198.0
33 TraesCS4B01G271700 chr1B 88.535 157 15 3 4105 4258 585331017 585330861 2.760000e-43 187.0
34 TraesCS4B01G271700 chr1B 77.358 159 26 10 515 671 478899215 478899365 1.040000e-12 86.1
35 TraesCS4B01G271700 chrUn 92.593 135 10 0 4128 4262 64149698 64149832 1.650000e-45 195.0
36 TraesCS4B01G271700 chr5D 91.971 137 11 0 4125 4261 447459583 447459719 5.940000e-45 193.0
37 TraesCS4B01G271700 chr5D 80.000 160 17 12 515 671 560377964 560378111 2.860000e-18 104.0
38 TraesCS4B01G271700 chr5D 82.524 103 12 4 527 629 268691647 268691551 1.040000e-12 86.1
39 TraesCS4B01G271700 chr5D 81.395 86 13 3 4531 4613 327467121 327467036 3.750000e-07 67.6
40 TraesCS4B01G271700 chr3A 82.530 166 26 3 3337 3500 94860765 94860929 6.060000e-30 143.0
41 TraesCS4B01G271700 chr5A 78.977 176 27 9 497 671 534068754 534068920 1.710000e-20 111.0
42 TraesCS4B01G271700 chr7A 89.655 87 5 2 2011 2093 121396019 121396105 2.210000e-19 108.0
43 TraesCS4B01G271700 chr7A 86.957 92 9 3 2015 2106 504220500 504220412 3.700000e-17 100.0
44 TraesCS4B01G271700 chr6D 80.952 147 19 8 515 657 283758002 283758143 2.210000e-19 108.0
45 TraesCS4B01G271700 chr6D 77.889 199 21 8 3205 3381 62431064 62431261 1.030000e-17 102.0
46 TraesCS4B01G271700 chr6D 90.244 82 1 4 2026 2103 93644474 93644396 3.700000e-17 100.0
47 TraesCS4B01G271700 chr1A 89.535 86 5 3 2007 2090 581594144 581594227 7.950000e-19 106.0
48 TraesCS4B01G271700 chr1A 87.778 90 8 2 2014 2103 235687560 235687474 1.030000e-17 102.0
49 TraesCS4B01G271700 chr1A 80.000 125 15 8 4524 4646 428996787 428996671 3.730000e-12 84.2
50 TraesCS4B01G271700 chr3B 88.764 89 5 1 2015 2098 99080213 99080301 2.860000e-18 104.0
51 TraesCS4B01G271700 chr7D 88.506 87 6 1 2011 2093 117234485 117234571 1.030000e-17 102.0
52 TraesCS4B01G271700 chr5B 75.771 227 34 17 527 747 710729560 710729771 1.720000e-15 95.3
53 TraesCS4B01G271700 chr7B 79.545 132 20 7 527 657 619132830 619132705 2.880000e-13 87.9
54 TraesCS4B01G271700 chr7B 78.788 132 22 6 527 657 619142677 619142551 3.730000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G271700 chr4B 548100863 548106666 5803 True 10719.0 10719 100.000000 1 5804 1 chr4B.!!$R2 5803
1 TraesCS4B01G271700 chr4B 547578818 547579398 580 True 584.0 584 85.154000 2095 2667 1 chr4B.!!$R1 572
2 TraesCS4B01G271700 chr4D 441634576 441640220 5644 True 2259.0 2704 88.360667 1 5802 3 chr4D.!!$R3 5801
3 TraesCS4B01G271700 chr4D 441493617 441494724 1107 True 965.0 965 82.659000 928 2021 1 chr4D.!!$R1 1093
4 TraesCS4B01G271700 chr4D 441512957 441514851 1894 True 614.5 630 85.736500 934 2740 2 chr4D.!!$R2 1806
5 TraesCS4B01G271700 chr4A 25801868 25808303 6435 False 1346.0 2523 87.992600 1 5804 5 chr4A.!!$F3 5803
6 TraesCS4B01G271700 chr4A 26012550 26013644 1094 False 1059.0 1059 84.244000 928 2016 1 chr4A.!!$F1 1088
7 TraesCS4B01G271700 chr4A 26064743 26065838 1095 False 859.0 859 81.108000 939 2021 1 chr4A.!!$F2 1082
8 TraesCS4B01G271700 chr2A 705525962 705527889 1927 True 720.0 752 80.697000 929 2923 2 chr2A.!!$R1 1994
9 TraesCS4B01G271700 chr2B 676192764 676193591 827 True 726.0 726 82.800000 2095 2923 1 chr2B.!!$R1 828
10 TraesCS4B01G271700 chr2B 676679248 676680330 1082 True 723.0 723 79.057000 937 2021 1 chr2B.!!$R4 1084
11 TraesCS4B01G271700 chr2B 676476745 676477837 1092 True 695.0 695 78.546000 929 2021 1 chr2B.!!$R2 1092
12 TraesCS4B01G271700 chr2B 676589169 676589855 686 True 593.0 593 82.878000 2095 2764 1 chr2B.!!$R3 669
13 TraesCS4B01G271700 chr2D 564701580 564702386 806 True 625.0 625 81.395000 2095 2875 1 chr2D.!!$R2 780
14 TraesCS4B01G271700 chr2D 564921823 564922507 684 True 608.0 608 83.261000 2095 2764 1 chr2D.!!$R3 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 1010 1.001641 CTCAAGCCCCAGGGTGAAG 60.002 63.158 4.22 0.0 37.65 3.02 F
982 1107 1.027357 TCTACCGAATACCGCTCCAC 58.973 55.000 0.00 0.0 36.84 4.02 F
1884 2209 1.178276 CTACGGACTTGGAGCTGTCT 58.822 55.000 0.00 0.0 34.01 3.41 F
3271 3790 0.033503 CCCGCCCCAGAAAAGGTTAT 60.034 55.000 0.00 0.0 0.00 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 2410 2.232941 GTGAAGTACTCCATCCGTTCCA 59.767 50.000 0.0 0.0 0.00 3.53 R
2084 2414 2.244695 TGTGTGAAGTACTCCATCCGT 58.755 47.619 0.0 0.0 0.00 4.69 R
3631 4727 0.033781 CCGACCGTGGGACAAGTTTA 59.966 55.000 0.0 0.0 44.16 2.01 R
4865 5998 0.755686 GCCACATCACAACCCCAAAA 59.244 50.000 0.0 0.0 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.544564 CCAATATAGTGTTTTATTCCCACCGT 59.455 38.462 0.00 0.00 0.00 4.83
30 31 5.593968 AGTGTTTTATTCCCACCGTTTTTC 58.406 37.500 0.00 0.00 0.00 2.29
57 59 4.680171 GTTTAGAACCTTCCATGAACCG 57.320 45.455 0.00 0.00 0.00 4.44
142 159 5.603596 TCTGCTTTGCAAACATCTTTCAAT 58.396 33.333 8.05 0.00 38.41 2.57
151 168 7.462731 TGCAAACATCTTTCAATTTTGTGAAC 58.537 30.769 0.00 0.00 37.24 3.18
337 424 9.524106 AATTTTAAACACTTTTAAACTCGGGAG 57.476 29.630 0.00 0.00 43.66 4.30
338 425 6.622833 TTAAACACTTTTAAACTCGGGAGG 57.377 37.500 0.00 0.00 34.80 4.30
360 451 7.645735 GGAGGATTTTCTGAGCGAATAATTTTC 59.354 37.037 0.00 0.00 0.00 2.29
370 461 8.514136 TGAGCGAATAATTTTCGAAAATTGTT 57.486 26.923 39.75 38.44 45.85 2.83
447 538 9.599866 AAATGAACCTTTTTCTTTAAGGAACAG 57.400 29.630 8.53 0.00 44.01 3.16
605 700 4.096382 ACAGTTTTTCTGAATGTGCGAACT 59.904 37.500 0.00 0.00 46.27 3.01
606 701 5.295787 ACAGTTTTTCTGAATGTGCGAACTA 59.704 36.000 0.00 0.00 46.27 2.24
661 762 8.855110 TCCAGTAAGCATTTTGTGATTTCTTTA 58.145 29.630 0.00 0.00 37.64 1.85
662 763 9.474920 CCAGTAAGCATTTTGTGATTTCTTTAA 57.525 29.630 0.00 0.00 37.64 1.52
819 933 2.819550 CCTAATAGGGCGTGCGGT 59.180 61.111 0.00 0.00 0.00 5.68
872 989 4.989588 CGTCACGCGCTGTATAGA 57.010 55.556 5.73 0.00 0.00 1.98
889 1006 2.860971 AAGCTCAAGCCCCAGGGT 60.861 61.111 4.22 0.00 43.38 4.34
893 1010 1.001641 CTCAAGCCCCAGGGTGAAG 60.002 63.158 4.22 0.00 37.65 3.02
982 1107 1.027357 TCTACCGAATACCGCTCCAC 58.973 55.000 0.00 0.00 36.84 4.02
1056 1181 2.683859 CGACGTCCTCCACAGCGTA 61.684 63.158 10.58 0.00 37.71 4.42
1260 1394 3.036429 GCCGCCTCTGGATTCCTGT 62.036 63.158 3.95 0.00 0.00 4.00
1398 1541 1.779061 TTGAGCAGGAACCCTCACCC 61.779 60.000 0.00 0.00 37.03 4.61
1497 1798 1.586154 ATTTTTCAGGCTGTCCGGCG 61.586 55.000 15.27 0.00 44.22 6.46
1566 1867 2.479566 TGTCTCCATCCTTGAAGCAC 57.520 50.000 0.00 0.00 0.00 4.40
1884 2209 1.178276 CTACGGACTTGGAGCTGTCT 58.822 55.000 0.00 0.00 34.01 3.41
1940 2265 7.174080 GCACCTCTCTTAATCCCTCAAATTATC 59.826 40.741 0.00 0.00 0.00 1.75
2041 2371 4.935205 CACTCCGTTCCATAATTCTTGTCA 59.065 41.667 0.00 0.00 0.00 3.58
2051 2381 8.877864 TCCATAATTCTTGTCATGGTTTTAGT 57.122 30.769 3.23 0.00 39.21 2.24
2059 2389 9.959749 TTCTTGTCATGGTTTTAGTATTTGAAC 57.040 29.630 0.00 0.00 0.00 3.18
2060 2390 9.349713 TCTTGTCATGGTTTTAGTATTTGAACT 57.650 29.630 0.00 0.00 0.00 3.01
2072 2402 8.659925 TTAGTATTTGAACTAAAACCACGACA 57.340 30.769 0.00 0.00 38.64 4.35
2073 2403 7.556733 AGTATTTGAACTAAAACCACGACAA 57.443 32.000 0.00 0.00 0.00 3.18
2074 2404 7.636326 AGTATTTGAACTAAAACCACGACAAG 58.364 34.615 0.00 0.00 0.00 3.16
2075 2405 6.687081 ATTTGAACTAAAACCACGACAAGA 57.313 33.333 0.00 0.00 0.00 3.02
2076 2406 6.497785 TTTGAACTAAAACCACGACAAGAA 57.502 33.333 0.00 0.00 0.00 2.52
2077 2407 6.687081 TTGAACTAAAACCACGACAAGAAT 57.313 33.333 0.00 0.00 0.00 2.40
2078 2408 6.687081 TGAACTAAAACCACGACAAGAATT 57.313 33.333 0.00 0.00 0.00 2.17
2079 2409 7.789273 TGAACTAAAACCACGACAAGAATTA 57.211 32.000 0.00 0.00 0.00 1.40
2080 2410 8.385898 TGAACTAAAACCACGACAAGAATTAT 57.614 30.769 0.00 0.00 0.00 1.28
2081 2411 8.286800 TGAACTAAAACCACGACAAGAATTATG 58.713 33.333 0.00 0.00 0.00 1.90
2082 2412 7.141100 ACTAAAACCACGACAAGAATTATGG 57.859 36.000 0.00 0.00 0.00 2.74
2083 2413 6.938030 ACTAAAACCACGACAAGAATTATGGA 59.062 34.615 0.00 0.00 0.00 3.41
2084 2414 6.642707 AAAACCACGACAAGAATTATGGAA 57.357 33.333 0.00 0.00 0.00 3.53
2085 2415 5.622770 AACCACGACAAGAATTATGGAAC 57.377 39.130 0.00 0.00 0.00 3.62
2086 2416 3.682858 ACCACGACAAGAATTATGGAACG 59.317 43.478 0.00 0.00 0.00 3.95
2087 2417 3.063452 CCACGACAAGAATTATGGAACGG 59.937 47.826 0.00 0.00 0.00 4.44
2088 2418 3.930229 CACGACAAGAATTATGGAACGGA 59.070 43.478 0.00 0.00 0.00 4.69
2089 2419 4.570772 CACGACAAGAATTATGGAACGGAT 59.429 41.667 0.00 0.00 0.00 4.18
2090 2420 4.570772 ACGACAAGAATTATGGAACGGATG 59.429 41.667 0.00 0.00 0.00 3.51
2091 2421 4.024893 CGACAAGAATTATGGAACGGATGG 60.025 45.833 0.00 0.00 0.00 3.51
2092 2422 5.110814 ACAAGAATTATGGAACGGATGGA 57.889 39.130 0.00 0.00 0.00 3.41
2093 2423 5.126067 ACAAGAATTATGGAACGGATGGAG 58.874 41.667 0.00 0.00 0.00 3.86
2204 2655 5.200368 TCTTTTTGACAGGGATTTGAAGC 57.800 39.130 0.00 0.00 0.00 3.86
2230 2681 6.015265 GGTGCCCTACATTTACCAAGTTAAAA 60.015 38.462 0.00 0.00 0.00 1.52
2390 2862 4.999950 GTGACCATCCATGATTACCTGATC 59.000 45.833 0.00 0.00 0.00 2.92
2475 2960 0.678048 GGGACAGTCAGTTGCATCCC 60.678 60.000 2.17 2.08 39.16 3.85
2477 2962 1.340405 GGACAGTCAGTTGCATCCCAT 60.340 52.381 2.17 0.00 0.00 4.00
2583 3068 2.446435 GCCTTGAGCAAATTAGGGTCA 58.554 47.619 7.59 7.59 42.97 4.02
2633 3120 4.771590 ATGTGAGTTATTGTTGGCACTG 57.228 40.909 0.00 0.00 0.00 3.66
2691 3182 3.058914 GCTACTGCATTATTAACCAGGCG 60.059 47.826 9.46 0.00 39.41 5.52
2776 3270 0.384669 CGTTCAGACTCCCCGTATCC 59.615 60.000 0.00 0.00 0.00 2.59
2777 3271 1.481871 GTTCAGACTCCCCGTATCCA 58.518 55.000 0.00 0.00 0.00 3.41
2836 3343 9.125026 CATGTTTCTAACTGGCTTTATTATCCT 57.875 33.333 0.00 0.00 0.00 3.24
2869 3376 8.671384 ATGCTATCAATTTGGATTTTGGATTG 57.329 30.769 0.00 0.00 0.00 2.67
2942 3461 9.273137 CTATTATTATGGTCCCCAGTATTCTCT 57.727 37.037 0.00 0.00 36.75 3.10
3015 3534 5.947228 TTGAGCTTTGTTTTCATCTCGAT 57.053 34.783 0.00 0.00 0.00 3.59
3030 3549 5.185056 TCATCTCGATCCTGTACAAACTTGA 59.815 40.000 0.00 0.00 0.00 3.02
3071 3590 6.779049 TCTTATAAGCTACGATTCCCCTTGTA 59.221 38.462 7.67 0.00 0.00 2.41
3076 3595 2.622064 ACGATTCCCCTTGTAGATGC 57.378 50.000 0.00 0.00 0.00 3.91
3080 3599 0.255890 TTCCCCTTGTAGATGCTGCC 59.744 55.000 0.00 0.00 0.00 4.85
3099 3618 5.745227 CTGCCTATTCTTTTGTCCCTTCTA 58.255 41.667 0.00 0.00 0.00 2.10
3108 3627 6.180472 TCTTTTGTCCCTTCTATTTAGCTGG 58.820 40.000 0.00 0.00 0.00 4.85
3120 3639 6.159293 TCTATTTAGCTGGCATCTCATAACG 58.841 40.000 0.00 0.00 0.00 3.18
3170 3689 1.985159 TCACTCCATACTGTTGCCCTT 59.015 47.619 0.00 0.00 0.00 3.95
3210 3729 8.807948 AATCTTGTTATGTGTTATGTTAGGCT 57.192 30.769 0.00 0.00 0.00 4.58
3249 3768 6.467339 CCCCTAAACTTTAATCCCCTATCCTG 60.467 46.154 0.00 0.00 0.00 3.86
3254 3773 2.735259 TAATCCCCTATCCTGTCCCC 57.265 55.000 0.00 0.00 0.00 4.81
3259 3778 3.242291 CTATCCTGTCCCCGCCCC 61.242 72.222 0.00 0.00 0.00 5.80
3266 3785 2.361230 GTCCCCGCCCCAGAAAAG 60.361 66.667 0.00 0.00 0.00 2.27
3268 3787 3.979497 CCCCGCCCCAGAAAAGGT 61.979 66.667 0.00 0.00 0.00 3.50
3271 3790 0.033503 CCCGCCCCAGAAAAGGTTAT 60.034 55.000 0.00 0.00 0.00 1.89
3330 3849 5.337578 CCCCCAAAAATCGAACACATATT 57.662 39.130 0.00 0.00 0.00 1.28
3352 3871 6.406093 TTTTTGCACACAAACTCATTTCAG 57.594 33.333 0.00 0.00 45.29 3.02
3359 3878 6.092092 CACACAAACTCATTTCAGACACAAA 58.908 36.000 0.00 0.00 0.00 2.83
3378 3897 9.243637 GACACAAATTTAAACTAGTTCATTGCA 57.756 29.630 8.95 0.00 0.00 4.08
3394 3913 9.060347 AGTTCATTGCATAGTTAGATAATGGTG 57.940 33.333 0.00 0.00 0.00 4.17
3414 4090 5.067544 TGGTGCCACATTAACATCATACATG 59.932 40.000 0.00 0.00 0.00 3.21
3420 4096 6.476380 CCACATTAACATCATACATGGCAAAC 59.524 38.462 0.00 0.00 0.00 2.93
3426 4102 9.632807 TTAACATCATACATGGCAAACTTAAAC 57.367 29.630 0.00 0.00 0.00 2.01
3432 4108 5.186996 ACATGGCAAACTTAAACAGTCAG 57.813 39.130 0.00 0.00 32.94 3.51
3445 4541 8.355913 ACTTAAACAGTCAGTTACCTACTACAC 58.644 37.037 0.00 0.00 40.26 2.90
3458 4554 5.790593 ACCTACTACACAACACTACATTGG 58.209 41.667 0.00 0.00 0.00 3.16
3466 4562 5.163468 ACACAACACTACATTGGCATCAAAA 60.163 36.000 0.00 0.00 36.36 2.44
3467 4563 5.927689 CACAACACTACATTGGCATCAAAAT 59.072 36.000 0.00 0.00 36.36 1.82
3538 4634 3.067106 AGTCGTTTATGTCCTTGCAGTG 58.933 45.455 0.00 0.00 0.00 3.66
3541 4637 2.552315 CGTTTATGTCCTTGCAGTGGTT 59.448 45.455 7.55 0.00 0.00 3.67
3572 4668 0.264359 AGTCAGAGGAGGAGATGGGG 59.736 60.000 0.00 0.00 0.00 4.96
3577 4673 1.132881 AGAGGAGGAGATGGGGATCAC 60.133 57.143 0.00 0.00 0.00 3.06
3579 4675 2.110899 GAGGAGGAGATGGGGATCACTA 59.889 54.545 0.00 0.00 0.00 2.74
3580 4676 2.158234 AGGAGGAGATGGGGATCACTAC 60.158 54.545 0.00 0.00 0.00 2.73
3597 4693 3.733972 CCCCCGGGTGTTGCCATA 61.734 66.667 21.85 0.00 39.65 2.74
3645 4741 2.030007 TCTACCGTAAACTTGTCCCACG 60.030 50.000 0.00 0.00 0.00 4.94
3677 4773 3.682885 TTGCGGTACTTCGGCGGA 61.683 61.111 7.21 0.00 43.82 5.54
3684 4780 1.378911 TACTTCGGCGGAGGTAGCA 60.379 57.895 21.07 0.00 34.01 3.49
3706 4802 4.180946 CGGAGCTCGAGGTGACGG 62.181 72.222 23.97 9.10 42.43 4.79
3744 4841 2.204136 TGGGGAGGTGGCAGTGAT 60.204 61.111 0.00 0.00 0.00 3.06
3760 4857 2.353269 AGTGATAGAGAAGACGACGCAG 59.647 50.000 0.00 0.00 0.00 5.18
3764 4861 1.153997 GAGAAGACGACGCAGGACC 60.154 63.158 0.00 0.00 0.00 4.46
3765 4862 1.863662 GAGAAGACGACGCAGGACCA 61.864 60.000 0.00 0.00 0.00 4.02
3779 4876 0.836400 GGACCAAGAGGGAGGTGACA 60.836 60.000 0.00 0.00 38.50 3.58
3799 4896 2.752354 CAGTGTCAGAGTCGAGGAAGAT 59.248 50.000 0.00 0.00 0.00 2.40
3800 4897 2.752354 AGTGTCAGAGTCGAGGAAGATG 59.248 50.000 0.00 0.00 0.00 2.90
3801 4898 2.490115 GTGTCAGAGTCGAGGAAGATGT 59.510 50.000 0.00 0.00 0.00 3.06
3802 4899 3.057174 GTGTCAGAGTCGAGGAAGATGTT 60.057 47.826 0.00 0.00 0.00 2.71
3808 4905 0.320374 TCGAGGAAGATGTTGCGGTT 59.680 50.000 0.00 0.00 0.00 4.44
3818 4915 3.361158 TTGCGGTTCATGCACGGG 61.361 61.111 5.30 0.00 43.10 5.28
3853 4952 2.496817 GAGGCGTCGCAGGATCTT 59.503 61.111 20.50 0.00 0.00 2.40
3864 4963 0.250081 CAGGATCTTTAGGAGGCGGC 60.250 60.000 0.00 0.00 0.00 6.53
3869 4968 0.539986 TCTTTAGGAGGCGGCGAAAT 59.460 50.000 12.98 0.00 0.00 2.17
3879 4978 0.653636 GCGGCGAAATTCGATTGGTA 59.346 50.000 20.38 0.00 43.74 3.25
3884 4983 2.290641 GCGAAATTCGATTGGTAGCCAT 59.709 45.455 20.38 0.00 43.74 4.40
3892 4991 1.412710 GATTGGTAGCCATGACCTCGA 59.587 52.381 0.00 0.00 37.88 4.04
3908 5007 1.982938 CGAGTTCGAGGAAGGGGGT 60.983 63.158 0.00 0.00 43.02 4.95
3910 5009 0.822811 GAGTTCGAGGAAGGGGGTAC 59.177 60.000 0.00 0.00 0.00 3.34
3911 5010 0.412640 AGTTCGAGGAAGGGGGTACT 59.587 55.000 0.00 0.00 0.00 2.73
3922 5021 1.294068 AGGGGGTACTAGCCTGAATCA 59.706 52.381 4.29 0.00 35.71 2.57
3927 5026 2.485657 GGTACTAGCCTGAATCAAGGGC 60.486 54.545 5.47 5.47 45.57 5.19
3944 5043 2.770589 GCGGTGGCGGCATAAATGT 61.771 57.895 17.19 0.00 0.00 2.71
3945 5044 1.063972 CGGTGGCGGCATAAATGTG 59.936 57.895 17.19 0.00 0.00 3.21
3950 5049 0.525761 GGCGGCATAAATGTGTGTGT 59.474 50.000 3.07 0.00 0.00 3.72
3966 5065 3.728373 GTGGTGGGGTGGGCTAGG 61.728 72.222 0.00 0.00 0.00 3.02
3977 5076 2.554291 GGGCTAGGGTTTGGGGGTT 61.554 63.158 0.00 0.00 0.00 4.11
3979 5078 1.304962 GCTAGGGTTTGGGGGTTGG 60.305 63.158 0.00 0.00 0.00 3.77
3992 5091 1.422977 GGGTTGGGGCATTGGGTTTT 61.423 55.000 0.00 0.00 0.00 2.43
4001 5100 3.243401 GGGCATTGGGTTTTATAGCGAAG 60.243 47.826 0.00 0.00 0.00 3.79
4044 5143 1.597742 GGTCGCTATGCCATGAATGT 58.402 50.000 0.00 0.00 0.00 2.71
4079 5179 7.364144 GCAATCTCCCCATTTTTAGTGAGAATT 60.364 37.037 0.00 0.00 33.07 2.17
4081 5181 6.187682 TCTCCCCATTTTTAGTGAGAATTCC 58.812 40.000 0.65 0.00 0.00 3.01
4086 5186 6.889722 CCCATTTTTAGTGAGAATTCCCACTA 59.110 38.462 21.92 21.92 42.86 2.74
4087 5187 7.067494 CCCATTTTTAGTGAGAATTCCCACTAG 59.933 40.741 23.70 14.80 43.94 2.57
4088 5188 7.611855 CCATTTTTAGTGAGAATTCCCACTAGT 59.388 37.037 23.70 12.56 43.94 2.57
4095 5198 5.183904 GTGAGAATTCCCACTAGTGCAAAAT 59.816 40.000 17.86 12.44 0.00 1.82
4097 5200 6.945435 TGAGAATTCCCACTAGTGCAAAATTA 59.055 34.615 17.86 5.37 0.00 1.40
4124 5227 3.075134 AGAGAGGCAAAGTTTGGAGGATT 59.925 43.478 17.11 0.00 0.00 3.01
4129 5232 5.853936 AGGCAAAGTTTGGAGGATTAAAAC 58.146 37.500 17.11 0.00 34.68 2.43
4133 5236 6.866770 GCAAAGTTTGGAGGATTAAAACCTAC 59.133 38.462 17.11 7.19 37.93 3.18
4134 5237 7.255836 GCAAAGTTTGGAGGATTAAAACCTACT 60.256 37.037 17.11 7.31 39.02 2.57
4135 5238 7.997773 AAGTTTGGAGGATTAAAACCTACTC 57.002 36.000 13.22 0.00 39.02 2.59
4136 5239 6.482524 AGTTTGGAGGATTAAAACCTACTCC 58.517 40.000 13.22 6.91 43.63 3.85
4137 5240 5.446260 TTGGAGGATTAAAACCTACTCCC 57.554 43.478 13.22 7.71 42.90 4.30
4138 5241 4.706616 TGGAGGATTAAAACCTACTCCCT 58.293 43.478 13.22 0.00 42.90 4.20
4139 5242 4.720273 TGGAGGATTAAAACCTACTCCCTC 59.280 45.833 13.22 0.00 42.90 4.30
4140 5243 5.293319 GAGGATTAAAACCTACTCCCTCC 57.707 47.826 4.84 0.00 37.93 4.30
4141 5244 4.969999 GAGGATTAAAACCTACTCCCTCCT 59.030 45.833 4.84 0.00 37.93 3.69
4142 5245 5.360041 AGGATTAAAACCTACTCCCTCCTT 58.640 41.667 3.22 0.00 35.84 3.36
4143 5246 5.429109 AGGATTAAAACCTACTCCCTCCTTC 59.571 44.000 3.22 0.00 35.84 3.46
4144 5247 5.397672 GGATTAAAACCTACTCCCTCCTTCC 60.398 48.000 0.00 0.00 0.00 3.46
4145 5248 1.968278 AAACCTACTCCCTCCTTCCC 58.032 55.000 0.00 0.00 0.00 3.97
4146 5249 0.797579 AACCTACTCCCTCCTTCCCA 59.202 55.000 0.00 0.00 0.00 4.37
4147 5250 0.797579 ACCTACTCCCTCCTTCCCAA 59.202 55.000 0.00 0.00 0.00 4.12
4148 5251 1.153565 ACCTACTCCCTCCTTCCCAAA 59.846 52.381 0.00 0.00 0.00 3.28
4149 5252 2.275466 CCTACTCCCTCCTTCCCAAAA 58.725 52.381 0.00 0.00 0.00 2.44
4150 5253 2.853077 CCTACTCCCTCCTTCCCAAAAT 59.147 50.000 0.00 0.00 0.00 1.82
4151 5254 3.269643 CCTACTCCCTCCTTCCCAAAATT 59.730 47.826 0.00 0.00 0.00 1.82
4152 5255 3.458044 ACTCCCTCCTTCCCAAAATTC 57.542 47.619 0.00 0.00 0.00 2.17
4153 5256 2.721906 ACTCCCTCCTTCCCAAAATTCA 59.278 45.455 0.00 0.00 0.00 2.57
4154 5257 3.337909 ACTCCCTCCTTCCCAAAATTCAT 59.662 43.478 0.00 0.00 0.00 2.57
4155 5258 3.703052 CTCCCTCCTTCCCAAAATTCATG 59.297 47.826 0.00 0.00 0.00 3.07
4156 5259 3.077391 TCCCTCCTTCCCAAAATTCATGT 59.923 43.478 0.00 0.00 0.00 3.21
4157 5260 3.448660 CCCTCCTTCCCAAAATTCATGTC 59.551 47.826 0.00 0.00 0.00 3.06
4158 5261 4.347607 CCTCCTTCCCAAAATTCATGTCT 58.652 43.478 0.00 0.00 0.00 3.41
4159 5262 4.774200 CCTCCTTCCCAAAATTCATGTCTT 59.226 41.667 0.00 0.00 0.00 3.01
4160 5263 5.951747 CCTCCTTCCCAAAATTCATGTCTTA 59.048 40.000 0.00 0.00 0.00 2.10
4161 5264 6.608808 CCTCCTTCCCAAAATTCATGTCTTAT 59.391 38.462 0.00 0.00 0.00 1.73
4162 5265 7.779798 CCTCCTTCCCAAAATTCATGTCTTATA 59.220 37.037 0.00 0.00 0.00 0.98
4163 5266 9.359653 CTCCTTCCCAAAATTCATGTCTTATAT 57.640 33.333 0.00 0.00 0.00 0.86
4164 5267 9.713684 TCCTTCCCAAAATTCATGTCTTATATT 57.286 29.630 0.00 0.00 0.00 1.28
4193 5296 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
4194 5297 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
4195 5298 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
4196 5299 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
4197 5300 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
4198 5301 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
4199 5302 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
4200 5303 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
4201 5304 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
4202 5305 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
4248 5351 9.322776 CAAATCTAAGACAAGAATTTTGAGACG 57.677 33.333 7.18 0.00 31.51 4.18
4249 5352 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
4250 5353 5.932303 TCTAAGACAAGAATTTTGAGACGGG 59.068 40.000 7.18 0.00 0.00 5.28
4251 5354 3.412386 AGACAAGAATTTTGAGACGGGG 58.588 45.455 7.18 0.00 0.00 5.73
4252 5355 2.488153 GACAAGAATTTTGAGACGGGGG 59.512 50.000 7.18 0.00 0.00 5.40
4273 5376 5.366460 GGGGAGTATTTCTTAAGGCACTAC 58.634 45.833 1.85 2.07 38.49 2.73
4330 5434 0.849540 CCCTAAACAACCCCCTCCCT 60.850 60.000 0.00 0.00 0.00 4.20
4333 5437 1.282157 CTAAACAACCCCCTCCCTCAG 59.718 57.143 0.00 0.00 0.00 3.35
4337 5441 1.654997 ACAACCCCCTCCCTCAGTATA 59.345 52.381 0.00 0.00 0.00 1.47
4367 5471 2.301583 GGGATCTTCTAGACATGCCCTC 59.698 54.545 9.33 0.00 0.00 4.30
4427 5531 7.016268 TGGATATAAATGGTTACTCCCTCTGTC 59.984 40.741 0.00 0.00 34.77 3.51
4430 5534 0.113776 TGGTTACTCCCTCTGTCCGT 59.886 55.000 0.00 0.00 34.77 4.69
4441 5545 2.027561 CCTCTGTCCGTGTTTATTGGGA 60.028 50.000 0.00 0.00 0.00 4.37
4442 5546 3.558321 CCTCTGTCCGTGTTTATTGGGAA 60.558 47.826 0.00 0.00 0.00 3.97
4660 5774 5.731591 AGGTAGTATGTTACAAGTGAAGCC 58.268 41.667 0.00 0.00 0.00 4.35
4662 5776 3.951663 AGTATGTTACAAGTGAAGCCCC 58.048 45.455 0.00 0.00 0.00 5.80
4675 5790 6.388619 AGTGAAGCCCCTATTAGAAGAAAA 57.611 37.500 0.00 0.00 0.00 2.29
4726 5841 4.952071 TGAAAAATCCCATTTGTCTGCA 57.048 36.364 1.76 0.00 37.38 4.41
4736 5851 4.142534 CCCATTTGTCTGCAGTATGTTCTG 60.143 45.833 14.67 4.32 39.31 3.02
4740 5855 3.917988 TGTCTGCAGTATGTTCTGTCTG 58.082 45.455 14.67 0.00 39.31 3.51
4749 5864 7.148356 TGCAGTATGTTCTGTCTGAATTGATTC 60.148 37.037 0.00 0.00 39.31 2.52
4750 5865 7.065563 GCAGTATGTTCTGTCTGAATTGATTCT 59.934 37.037 5.42 0.00 39.31 2.40
4834 5967 9.607333 AGAGGTATGATTGTATGAAGATTAGGA 57.393 33.333 0.00 0.00 0.00 2.94
4856 5989 8.593492 AGGACTTTGTGATTTTTAAGAAATGC 57.407 30.769 0.00 0.00 0.00 3.56
4861 5994 8.954950 TTTGTGATTTTTAAGAAATGCTGGAA 57.045 26.923 0.00 0.00 0.00 3.53
4864 5997 7.984050 TGTGATTTTTAAGAAATGCTGGAACAA 59.016 29.630 0.00 0.00 38.70 2.83
4865 5998 8.992073 GTGATTTTTAAGAAATGCTGGAACAAT 58.008 29.630 0.00 0.00 38.70 2.71
4873 6006 1.799933 TGCTGGAACAATTTTGGGGT 58.200 45.000 0.00 0.00 38.70 4.95
4903 6040 3.131223 TGGCAGTAGCTATGTTCTGTCTC 59.869 47.826 13.08 4.65 41.70 3.36
4917 6054 6.673583 TGTTCTGTCTCTAGGGATCTTATGA 58.326 40.000 0.00 0.00 0.00 2.15
4951 6089 8.052748 ACTTACCATATTATCTTTGGCAAGTGA 58.947 33.333 0.00 3.73 42.70 3.41
4965 6103 3.304928 GGCAAGTGATTTTGTGTCTCAGG 60.305 47.826 0.00 0.00 0.00 3.86
4969 6107 6.294176 GCAAGTGATTTTGTGTCTCAGGTTAT 60.294 38.462 0.00 0.00 0.00 1.89
4977 6115 9.965824 ATTTTGTGTCTCAGGTTATACTTTTTG 57.034 29.630 0.00 0.00 0.00 2.44
5017 6155 2.875933 TCGTAGGTGTTTGCCTTTTCTG 59.124 45.455 0.00 0.00 39.94 3.02
5026 6164 4.644685 TGTTTGCCTTTTCTGCTTCTTACT 59.355 37.500 0.00 0.00 0.00 2.24
5081 6231 6.041523 TCAACATTTTAAAACCCCTTCTCCTG 59.958 38.462 1.97 0.00 0.00 3.86
5099 6249 2.492088 CCTGCTACCAAAACCTTTAGGC 59.508 50.000 0.00 0.00 39.32 3.93
5112 6262 4.740902 ACCTTTAGGCTTGAGAAATGGTT 58.259 39.130 0.00 0.00 39.32 3.67
5132 6282 2.259012 TGCTTGGGCATTCAGGATTTT 58.741 42.857 0.00 0.00 44.28 1.82
5133 6283 2.027929 TGCTTGGGCATTCAGGATTTTG 60.028 45.455 0.00 0.00 44.28 2.44
5148 6298 2.031258 TTTTGTCCTCTCGTGCACAA 57.969 45.000 18.64 0.00 0.00 3.33
5160 6313 1.338337 CGTGCACAAAATTACCACCCA 59.662 47.619 18.64 0.00 0.00 4.51
5181 6334 5.412904 CCCATTCTCCTTTCACTTCTGTTAC 59.587 44.000 0.00 0.00 0.00 2.50
5188 6341 5.105106 TCCTTTCACTTCTGTTACTGACACA 60.105 40.000 0.00 0.00 33.82 3.72
5201 6354 7.144661 TGTTACTGACACATGGCAATTTAAAG 58.855 34.615 0.00 0.00 32.00 1.85
5246 6399 8.373981 AGATGTGAGGATGGAGTATCAATTTAG 58.626 37.037 0.00 0.00 37.54 1.85
5249 6402 7.345653 TGTGAGGATGGAGTATCAATTTAGAGT 59.654 37.037 0.00 0.00 37.54 3.24
5250 6403 7.870445 GTGAGGATGGAGTATCAATTTAGAGTC 59.130 40.741 0.00 0.00 37.54 3.36
5253 6406 7.786943 AGGATGGAGTATCAATTTAGAGTCTGA 59.213 37.037 1.86 0.00 37.54 3.27
5286 6445 8.622948 AAGAAAAGATCTACTCCACGAATTTT 57.377 30.769 0.00 0.00 37.42 1.82
5329 6495 8.213679 TCTGTAAAATATGATTTCTCCTGAGGG 58.786 37.037 0.00 0.00 0.00 4.30
5389 6556 4.257731 GACATTTGGAGGAAGGAAGAGAC 58.742 47.826 0.00 0.00 0.00 3.36
5390 6557 3.913163 ACATTTGGAGGAAGGAAGAGACT 59.087 43.478 0.00 0.00 0.00 3.24
5400 6567 0.326264 GGAAGAGACTGCCATGTGGT 59.674 55.000 0.35 0.00 37.57 4.16
5419 6586 9.513906 CATGTGGTAGAGATCTAGAGATAGAAA 57.486 37.037 0.00 0.00 34.37 2.52
5455 6623 8.486210 AGGTGACTAGAATACTGCATATTTTCA 58.514 33.333 0.00 0.00 40.61 2.69
5475 6643 1.822615 GCAGTGGCAACCCAAAGTT 59.177 52.632 0.00 0.00 44.33 2.66
5496 6664 5.074515 AGTTGGAGGAAAACCCATCTTTCTA 59.925 40.000 0.00 0.00 37.41 2.10
5518 6686 7.811282 TCTATTTTAAATAGTCCAGATGGCCA 58.189 34.615 20.12 8.56 34.44 5.36
5535 6703 3.260380 TGGCCATGTTTATTCCACCAAAG 59.740 43.478 0.00 0.00 0.00 2.77
5555 6723 3.966979 AGATATGTTGGATGTTGCCACA 58.033 40.909 0.00 0.00 37.75 4.17
5557 6725 4.957954 AGATATGTTGGATGTTGCCACAAT 59.042 37.500 0.00 0.00 37.75 2.71
5607 6775 6.215841 TGAACCTAAACCCAATATACACCTGA 59.784 38.462 0.00 0.00 0.00 3.86
5633 6801 4.778213 CCATATTTGGTCTGAGGAGGAA 57.222 45.455 0.00 0.00 38.30 3.36
5634 6802 5.316158 CCATATTTGGTCTGAGGAGGAAT 57.684 43.478 0.00 0.00 38.30 3.01
5635 6803 5.699143 CCATATTTGGTCTGAGGAGGAATT 58.301 41.667 0.00 0.00 38.30 2.17
5636 6804 6.841601 CCATATTTGGTCTGAGGAGGAATTA 58.158 40.000 0.00 0.00 38.30 1.40
5637 6805 7.290061 CCATATTTGGTCTGAGGAGGAATTAA 58.710 38.462 0.00 0.00 38.30 1.40
5638 6806 7.946776 CCATATTTGGTCTGAGGAGGAATTAAT 59.053 37.037 0.00 0.00 38.30 1.40
5639 6807 9.359653 CATATTTGGTCTGAGGAGGAATTAATT 57.640 33.333 0.00 0.00 0.00 1.40
5669 6855 9.674068 AGGAGGAGAATATCAACTTAGAAAAAC 57.326 33.333 0.00 0.00 0.00 2.43
5701 6889 5.622346 AGGAAGAGATTAAGGACACCATC 57.378 43.478 0.00 0.00 0.00 3.51
5702 6890 4.100189 AGGAAGAGATTAAGGACACCATCG 59.900 45.833 0.00 0.00 0.00 3.84
5707 6895 1.646912 TTAAGGACACCATCGTGGGA 58.353 50.000 8.57 0.00 44.86 4.37
5723 6911 1.852309 TGGGATCATATGCAAGTGGGT 59.148 47.619 0.00 0.00 0.00 4.51
5725 6913 2.508526 GGATCATATGCAAGTGGGTCC 58.491 52.381 0.00 1.19 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 215 7.269937 CGCAAATTTGAAAACAATGTTCACAAA 59.730 29.630 22.31 22.22 34.78 2.83
201 218 6.473521 TCGCAAATTTGAAAACAATGTTCAC 58.526 32.000 22.31 0.00 34.78 3.18
203 220 6.958193 TGTTCGCAAATTTGAAAACAATGTTC 59.042 30.769 24.65 5.53 33.87 3.18
204 221 6.835914 TGTTCGCAAATTTGAAAACAATGTT 58.164 28.000 24.65 0.00 33.87 2.71
206 223 7.895582 AATGTTCGCAAATTTGAAAACAATG 57.104 28.000 27.81 3.91 37.53 2.82
207 224 8.908172 AAAATGTTCGCAAATTTGAAAACAAT 57.092 23.077 27.81 21.80 37.53 2.71
208 225 9.994432 ATAAAATGTTCGCAAATTTGAAAACAA 57.006 22.222 27.81 18.51 37.53 2.83
337 424 7.186804 TCGAAAATTATTCGCTCAGAAAATCC 58.813 34.615 14.12 0.00 42.91 3.01
338 425 8.601243 TTCGAAAATTATTCGCTCAGAAAATC 57.399 30.769 14.12 0.00 42.91 2.17
494 585 8.840321 CGTGTATCCTAATTTTCTCCATGAATT 58.160 33.333 0.00 0.00 34.24 2.17
496 587 7.561251 TCGTGTATCCTAATTTTCTCCATGAA 58.439 34.615 0.00 0.00 0.00 2.57
498 589 7.279981 TGTTCGTGTATCCTAATTTTCTCCATG 59.720 37.037 0.00 0.00 0.00 3.66
499 590 7.280205 GTGTTCGTGTATCCTAATTTTCTCCAT 59.720 37.037 0.00 0.00 0.00 3.41
500 591 6.592607 GTGTTCGTGTATCCTAATTTTCTCCA 59.407 38.462 0.00 0.00 0.00 3.86
501 592 6.817140 AGTGTTCGTGTATCCTAATTTTCTCC 59.183 38.462 0.00 0.00 0.00 3.71
564 658 9.980780 AAAAACTGTTCATAATTTTGGAAAACG 57.019 25.926 0.00 0.00 0.00 3.60
577 672 6.017523 TCGCACATTCAGAAAAACTGTTCATA 60.018 34.615 0.00 0.00 45.86 2.15
597 692 8.280909 TCTTGATTTTGAAAAATAGTTCGCAC 57.719 30.769 0.00 0.00 38.64 5.34
744 850 7.851387 TTCTTTTTCCGCCTTTTGTTATTTT 57.149 28.000 0.00 0.00 0.00 1.82
745 851 7.851387 TTTCTTTTTCCGCCTTTTGTTATTT 57.149 28.000 0.00 0.00 0.00 1.40
746 852 7.851387 TTTTCTTTTTCCGCCTTTTGTTATT 57.149 28.000 0.00 0.00 0.00 1.40
747 853 7.851387 TTTTTCTTTTTCCGCCTTTTGTTAT 57.149 28.000 0.00 0.00 0.00 1.89
792 906 1.767692 CCTATTAGGCCGGCCCATT 59.232 57.895 41.72 26.66 36.58 3.16
872 989 2.860971 ACCCTGGGGCTTGAGCTT 60.861 61.111 18.88 0.00 41.70 3.74
889 1006 2.602676 CGGAAAGGGAGGGGCTTCA 61.603 63.158 0.00 0.00 0.00 3.02
893 1010 1.228769 AAAACGGAAAGGGAGGGGC 60.229 57.895 0.00 0.00 0.00 5.80
1398 1541 1.876799 ACGAGACGCAGATCAGATAGG 59.123 52.381 0.00 0.00 0.00 2.57
1497 1798 3.600388 CTCCATACTCAGTTCCACCAAC 58.400 50.000 0.00 0.00 34.86 3.77
1884 2209 4.492494 ACATACCACATCAGAATCAGCA 57.508 40.909 0.00 0.00 0.00 4.41
1948 2278 8.911965 TGGTTGCTGCATGAGAAATAATAATTA 58.088 29.630 1.84 0.00 0.00 1.40
2051 2381 7.789273 TCTTGTCGTGGTTTTAGTTCAAATA 57.211 32.000 0.00 0.00 0.00 1.40
2053 2383 6.497785 TTCTTGTCGTGGTTTTAGTTCAAA 57.502 33.333 0.00 0.00 0.00 2.69
2054 2384 6.687081 ATTCTTGTCGTGGTTTTAGTTCAA 57.313 33.333 0.00 0.00 0.00 2.69
2055 2385 6.687081 AATTCTTGTCGTGGTTTTAGTTCA 57.313 33.333 0.00 0.00 0.00 3.18
2056 2386 7.749126 CCATAATTCTTGTCGTGGTTTTAGTTC 59.251 37.037 0.00 0.00 0.00 3.01
2057 2387 7.446013 TCCATAATTCTTGTCGTGGTTTTAGTT 59.554 33.333 0.00 0.00 0.00 2.24
2058 2388 6.938030 TCCATAATTCTTGTCGTGGTTTTAGT 59.062 34.615 0.00 0.00 0.00 2.24
2059 2389 7.372451 TCCATAATTCTTGTCGTGGTTTTAG 57.628 36.000 0.00 0.00 0.00 1.85
2060 2390 7.571613 CGTTCCATAATTCTTGTCGTGGTTTTA 60.572 37.037 0.00 0.00 0.00 1.52
2061 2391 6.443792 GTTCCATAATTCTTGTCGTGGTTTT 58.556 36.000 0.00 0.00 0.00 2.43
2062 2392 5.334569 CGTTCCATAATTCTTGTCGTGGTTT 60.335 40.000 0.00 0.00 0.00 3.27
2063 2393 4.153475 CGTTCCATAATTCTTGTCGTGGTT 59.847 41.667 0.00 0.00 0.00 3.67
2064 2394 3.682858 CGTTCCATAATTCTTGTCGTGGT 59.317 43.478 0.00 0.00 0.00 4.16
2065 2395 3.063452 CCGTTCCATAATTCTTGTCGTGG 59.937 47.826 0.00 0.00 0.00 4.94
2066 2396 3.930229 TCCGTTCCATAATTCTTGTCGTG 59.070 43.478 0.00 0.00 0.00 4.35
2067 2397 4.196626 TCCGTTCCATAATTCTTGTCGT 57.803 40.909 0.00 0.00 0.00 4.34
2068 2398 4.024893 CCATCCGTTCCATAATTCTTGTCG 60.025 45.833 0.00 0.00 0.00 4.35
2069 2399 5.123227 TCCATCCGTTCCATAATTCTTGTC 58.877 41.667 0.00 0.00 0.00 3.18
2070 2400 5.110814 TCCATCCGTTCCATAATTCTTGT 57.889 39.130 0.00 0.00 0.00 3.16
2071 2401 5.126067 ACTCCATCCGTTCCATAATTCTTG 58.874 41.667 0.00 0.00 0.00 3.02
2072 2402 5.373812 ACTCCATCCGTTCCATAATTCTT 57.626 39.130 0.00 0.00 0.00 2.52
2073 2403 5.602978 AGTACTCCATCCGTTCCATAATTCT 59.397 40.000 0.00 0.00 0.00 2.40
2074 2404 5.855045 AGTACTCCATCCGTTCCATAATTC 58.145 41.667 0.00 0.00 0.00 2.17
2075 2405 5.888982 AGTACTCCATCCGTTCCATAATT 57.111 39.130 0.00 0.00 0.00 1.40
2076 2406 5.365605 TGAAGTACTCCATCCGTTCCATAAT 59.634 40.000 0.00 0.00 0.00 1.28
2077 2407 4.712829 TGAAGTACTCCATCCGTTCCATAA 59.287 41.667 0.00 0.00 0.00 1.90
2078 2408 4.098960 GTGAAGTACTCCATCCGTTCCATA 59.901 45.833 0.00 0.00 0.00 2.74
2079 2409 3.104512 TGAAGTACTCCATCCGTTCCAT 58.895 45.455 0.00 0.00 0.00 3.41
2080 2410 2.232941 GTGAAGTACTCCATCCGTTCCA 59.767 50.000 0.00 0.00 0.00 3.53
2081 2411 2.232941 TGTGAAGTACTCCATCCGTTCC 59.767 50.000 0.00 0.00 0.00 3.62
2082 2412 3.251571 GTGTGAAGTACTCCATCCGTTC 58.748 50.000 0.00 0.00 0.00 3.95
2083 2413 2.631062 TGTGTGAAGTACTCCATCCGTT 59.369 45.455 0.00 0.00 0.00 4.44
2084 2414 2.244695 TGTGTGAAGTACTCCATCCGT 58.755 47.619 0.00 0.00 0.00 4.69
2085 2415 3.526931 ATGTGTGAAGTACTCCATCCG 57.473 47.619 0.00 0.00 0.00 4.18
2086 2416 4.740934 GCCTATGTGTGAAGTACTCCATCC 60.741 50.000 0.00 0.00 0.00 3.51
2087 2417 4.141937 TGCCTATGTGTGAAGTACTCCATC 60.142 45.833 0.00 0.00 0.00 3.51
2088 2418 3.774766 TGCCTATGTGTGAAGTACTCCAT 59.225 43.478 0.00 0.00 0.00 3.41
2089 2419 3.169908 TGCCTATGTGTGAAGTACTCCA 58.830 45.455 0.00 0.00 0.00 3.86
2090 2420 3.447586 TCTGCCTATGTGTGAAGTACTCC 59.552 47.826 0.00 0.00 0.00 3.85
2091 2421 4.720649 TCTGCCTATGTGTGAAGTACTC 57.279 45.455 0.00 0.00 0.00 2.59
2092 2422 5.423015 CAATCTGCCTATGTGTGAAGTACT 58.577 41.667 0.00 0.00 0.00 2.73
2093 2423 4.034510 GCAATCTGCCTATGTGTGAAGTAC 59.965 45.833 0.00 0.00 37.42 2.73
2230 2681 5.221048 GCACCAGTCATTGAGTAACAAAGTT 60.221 40.000 0.00 0.00 42.03 2.66
2405 2890 7.181305 TCACTTACATATGAAGGTCCCTAACAA 59.819 37.037 10.38 0.00 0.00 2.83
2583 3068 6.959639 TCCAGAAATTCTGCTAGTTTGTTT 57.040 33.333 17.03 0.00 42.98 2.83
2633 3120 6.446318 TGGAAGAAATGTAAGTTGCATGAAC 58.554 36.000 7.25 0.00 34.40 3.18
2668 3155 3.253432 GCCTGGTTAATAATGCAGTAGCC 59.747 47.826 0.00 0.46 41.13 3.93
2670 3157 3.498397 CCGCCTGGTTAATAATGCAGTAG 59.502 47.826 0.00 0.00 0.00 2.57
2732 3226 9.878599 CGTTTCTCCACATATATCCAAATTTAC 57.121 33.333 0.00 0.00 0.00 2.01
2733 3227 9.621629 ACGTTTCTCCACATATATCCAAATTTA 57.378 29.630 0.00 0.00 0.00 1.40
2744 3238 5.407407 AGTCTGAACGTTTCTCCACATAT 57.593 39.130 0.46 0.00 0.00 1.78
2776 3270 6.481313 TGTTGTCTCTCACTTTCTCTTCATTG 59.519 38.462 0.00 0.00 0.00 2.82
2777 3271 6.586344 TGTTGTCTCTCACTTTCTCTTCATT 58.414 36.000 0.00 0.00 0.00 2.57
2938 3457 9.454859 CGCCTGTATGGATGATATATATAGAGA 57.545 37.037 0.00 0.00 38.35 3.10
2943 3462 7.821359 GCATTCGCCTGTATGGATGATATATAT 59.179 37.037 0.00 0.00 38.35 0.86
3015 3534 5.680619 AGTCACATTCAAGTTTGTACAGGA 58.319 37.500 0.00 0.00 0.00 3.86
3071 3590 3.950395 GGACAAAAGAATAGGCAGCATCT 59.050 43.478 0.00 0.00 0.00 2.90
3076 3595 4.593956 AGAAGGGACAAAAGAATAGGCAG 58.406 43.478 0.00 0.00 0.00 4.85
3080 3599 9.620259 AGCTAAATAGAAGGGACAAAAGAATAG 57.380 33.333 0.00 0.00 0.00 1.73
3099 3618 4.960938 TCGTTATGAGATGCCAGCTAAAT 58.039 39.130 0.00 0.00 0.00 1.40
3146 3665 3.763897 GGGCAACAGTATGGAGTGAAAAT 59.236 43.478 0.00 0.00 43.62 1.82
3162 3681 3.862845 CACAAACAAGTACAAAGGGCAAC 59.137 43.478 0.00 0.00 0.00 4.17
3170 3689 9.729023 CATAACAAGATTCACAAACAAGTACAA 57.271 29.630 0.00 0.00 0.00 2.41
3210 3729 6.220881 AGTTTAGGGGATCTGCTAGAGATA 57.779 41.667 0.00 0.00 41.91 1.98
3249 3768 2.361230 CTTTTCTGGGGCGGGGAC 60.361 66.667 0.00 0.00 0.00 4.46
3254 3773 3.953712 AAAATAACCTTTTCTGGGGCG 57.046 42.857 0.00 0.00 0.00 6.13
3287 3806 6.488715 GGGGGATCTGCTATATGAAGAAAAT 58.511 40.000 0.00 0.00 33.23 1.82
3321 3840 6.815641 TGAGTTTGTGTGCAAAAATATGTGTT 59.184 30.769 0.00 0.00 45.01 3.32
3322 3841 6.336566 TGAGTTTGTGTGCAAAAATATGTGT 58.663 32.000 0.00 0.00 45.01 3.72
3323 3842 6.825284 TGAGTTTGTGTGCAAAAATATGTG 57.175 33.333 0.00 0.00 45.01 3.21
3324 3843 8.436046 AAATGAGTTTGTGTGCAAAAATATGT 57.564 26.923 0.00 0.00 45.01 2.29
3325 3844 8.549548 TGAAATGAGTTTGTGTGCAAAAATATG 58.450 29.630 0.00 0.00 45.01 1.78
3326 3845 8.659925 TGAAATGAGTTTGTGTGCAAAAATAT 57.340 26.923 0.00 0.00 45.01 1.28
3327 3846 7.978414 TCTGAAATGAGTTTGTGTGCAAAAATA 59.022 29.630 0.00 0.00 45.01 1.40
3328 3847 6.817641 TCTGAAATGAGTTTGTGTGCAAAAAT 59.182 30.769 0.00 0.00 45.01 1.82
3329 3848 6.090628 GTCTGAAATGAGTTTGTGTGCAAAAA 59.909 34.615 0.00 0.00 45.01 1.94
3330 3849 5.576384 GTCTGAAATGAGTTTGTGTGCAAAA 59.424 36.000 0.00 0.00 45.01 2.44
3352 3871 9.243637 TGCAATGAACTAGTTTAAATTTGTGTC 57.756 29.630 10.02 0.00 0.00 3.67
3369 3888 7.805071 GCACCATTATCTAACTATGCAATGAAC 59.195 37.037 0.00 0.00 0.00 3.18
3378 3897 9.284968 GTTAATGTGGCACCATTATCTAACTAT 57.715 33.333 16.26 0.00 37.20 2.12
3387 3906 6.830838 TGTATGATGTTAATGTGGCACCATTA 59.169 34.615 16.26 15.09 36.48 1.90
3394 3913 4.549458 GCCATGTATGATGTTAATGTGGC 58.451 43.478 0.00 0.00 42.19 5.01
3414 4090 5.516996 GGTAACTGACTGTTTAAGTTTGCC 58.483 41.667 2.84 8.52 40.07 4.52
3432 4108 7.330208 CCAATGTAGTGTTGTGTAGTAGGTAAC 59.670 40.741 0.00 0.00 0.00 2.50
3445 4541 6.753279 CCTATTTTGATGCCAATGTAGTGTTG 59.247 38.462 0.00 0.00 31.46 3.33
3458 4554 6.017934 TCTCGATGCTTAACCTATTTTGATGC 60.018 38.462 0.00 0.00 0.00 3.91
3506 4602 5.762218 GGACATAAACGACTAGAGCTACCTA 59.238 44.000 0.00 0.00 0.00 3.08
3509 4605 5.754543 AGGACATAAACGACTAGAGCTAC 57.245 43.478 0.00 0.00 0.00 3.58
3518 4614 2.159627 CCACTGCAAGGACATAAACGAC 59.840 50.000 0.00 0.00 39.30 4.34
3522 4618 2.890311 CCAACCACTGCAAGGACATAAA 59.110 45.455 11.56 0.00 39.30 1.40
3523 4619 2.107378 TCCAACCACTGCAAGGACATAA 59.893 45.455 11.56 0.00 39.30 1.90
3524 4620 1.702401 TCCAACCACTGCAAGGACATA 59.298 47.619 11.56 0.00 39.30 2.29
3525 4621 0.478072 TCCAACCACTGCAAGGACAT 59.522 50.000 11.56 0.00 39.30 3.06
3538 4634 0.966920 TGACTCGGACTTCTCCAACC 59.033 55.000 0.00 0.00 36.12 3.77
3541 4637 1.614583 CCTCTGACTCGGACTTCTCCA 60.615 57.143 0.00 0.00 36.12 3.86
3557 4653 1.132881 GTGATCCCCATCTCCTCCTCT 60.133 57.143 0.00 0.00 0.00 3.69
3611 4707 0.456221 CGGTAGAGATCCGCAACACT 59.544 55.000 0.00 0.00 41.48 3.55
3631 4727 0.033781 CCGACCGTGGGACAAGTTTA 59.966 55.000 0.00 0.00 44.16 2.01
3663 4759 2.056481 CTACCTCCGCCGAAGTACCG 62.056 65.000 0.00 0.00 0.00 4.02
3690 4786 4.500116 GCCGTCACCTCGAGCTCC 62.500 72.222 6.99 0.00 0.00 4.70
3726 4823 1.271840 TATCACTGCCACCTCCCCAC 61.272 60.000 0.00 0.00 0.00 4.61
3744 4841 1.085091 GTCCTGCGTCGTCTTCTCTA 58.915 55.000 0.00 0.00 0.00 2.43
3760 4857 0.836400 TGTCACCTCCCTCTTGGTCC 60.836 60.000 0.00 0.00 33.75 4.46
3764 4861 1.001406 GACACTGTCACCTCCCTCTTG 59.999 57.143 4.17 0.00 32.09 3.02
3765 4862 1.343069 GACACTGTCACCTCCCTCTT 58.657 55.000 4.17 0.00 32.09 2.85
3779 4876 2.570415 TCTTCCTCGACTCTGACACT 57.430 50.000 0.00 0.00 0.00 3.55
3799 4896 2.636462 CGTGCATGAACCGCAACA 59.364 55.556 0.00 0.00 41.97 3.33
3800 4897 2.126888 CCGTGCATGAACCGCAAC 60.127 61.111 7.72 0.00 41.97 4.17
3801 4898 3.361158 CCCGTGCATGAACCGCAA 61.361 61.111 7.72 0.00 41.97 4.85
3808 4905 4.343323 CCACCACCCCGTGCATGA 62.343 66.667 7.72 0.00 32.10 3.07
3842 4941 0.753262 GCCTCCTAAAGATCCTGCGA 59.247 55.000 0.00 0.00 0.00 5.10
3845 4944 0.250081 GCCGCCTCCTAAAGATCCTG 60.250 60.000 0.00 0.00 0.00 3.86
3846 4945 1.749334 CGCCGCCTCCTAAAGATCCT 61.749 60.000 0.00 0.00 0.00 3.24
3853 4952 0.808453 CGAATTTCGCCGCCTCCTAA 60.808 55.000 5.78 0.00 31.14 2.69
3864 4963 3.559655 TCATGGCTACCAATCGAATTTCG 59.440 43.478 12.54 12.54 38.01 3.46
3869 4968 1.837439 AGGTCATGGCTACCAATCGAA 59.163 47.619 0.00 0.00 39.64 3.71
3879 4978 0.965866 TCGAACTCGAGGTCATGGCT 60.966 55.000 28.94 0.00 44.22 4.75
3892 4991 0.412640 AGTACCCCCTTCCTCGAACT 59.587 55.000 0.00 0.00 0.00 3.01
3905 5004 2.104963 CCCTTGATTCAGGCTAGTACCC 59.895 54.545 0.00 0.00 31.69 3.69
3908 5007 1.412710 CGCCCTTGATTCAGGCTAGTA 59.587 52.381 13.32 0.00 44.84 1.82
3910 5009 0.533755 CCGCCCTTGATTCAGGCTAG 60.534 60.000 13.32 3.40 44.84 3.42
3911 5010 1.271840 ACCGCCCTTGATTCAGGCTA 61.272 55.000 13.32 0.00 44.84 3.93
3927 5026 1.063972 CACATTTATGCCGCCACCG 59.936 57.895 0.00 0.00 0.00 4.94
3928 5027 0.179140 CACACATTTATGCCGCCACC 60.179 55.000 0.00 0.00 0.00 4.61
3937 5036 2.158385 ACCCCACCACACACACATTTAT 60.158 45.455 0.00 0.00 0.00 1.40
3944 5043 3.814906 CCCACCCCACCACACACA 61.815 66.667 0.00 0.00 0.00 3.72
3966 5065 3.863114 ATGCCCCAACCCCCAAACC 62.863 63.158 0.00 0.00 0.00 3.27
3977 5076 2.393646 GCTATAAAACCCAATGCCCCA 58.606 47.619 0.00 0.00 0.00 4.96
3979 5078 2.303175 TCGCTATAAAACCCAATGCCC 58.697 47.619 0.00 0.00 0.00 5.36
3992 5091 0.764890 ATTGGCCTGCCTTCGCTATA 59.235 50.000 9.97 0.00 36.94 1.31
4022 5121 3.349006 CATGGCATAGCGACCGGC 61.349 66.667 0.00 0.00 44.05 6.13
4071 5171 3.334583 TGCACTAGTGGGAATTCTCAC 57.665 47.619 27.85 27.85 0.00 3.51
4079 5179 3.010138 AGCCTAATTTTGCACTAGTGGGA 59.990 43.478 23.95 3.81 0.00 4.37
4081 5181 5.428253 TCTAGCCTAATTTTGCACTAGTGG 58.572 41.667 23.95 5.41 0.00 4.00
4086 5186 4.775236 CCTCTCTAGCCTAATTTTGCACT 58.225 43.478 0.00 0.00 0.00 4.40
4087 5187 3.313803 GCCTCTCTAGCCTAATTTTGCAC 59.686 47.826 0.00 0.00 0.00 4.57
4088 5188 3.054434 TGCCTCTCTAGCCTAATTTTGCA 60.054 43.478 2.28 0.00 0.00 4.08
4095 5198 4.565652 CCAAACTTTGCCTCTCTAGCCTAA 60.566 45.833 0.00 0.00 0.00 2.69
4097 5200 2.290577 CCAAACTTTGCCTCTCTAGCCT 60.291 50.000 0.00 0.00 0.00 4.58
4124 5227 3.181392 TGGGAAGGAGGGAGTAGGTTTTA 60.181 47.826 0.00 0.00 0.00 1.52
4129 5232 1.966845 TTTGGGAAGGAGGGAGTAGG 58.033 55.000 0.00 0.00 0.00 3.18
4133 5236 3.456380 TGAATTTTGGGAAGGAGGGAG 57.544 47.619 0.00 0.00 0.00 4.30
4134 5237 3.077391 ACATGAATTTTGGGAAGGAGGGA 59.923 43.478 0.00 0.00 0.00 4.20
4135 5238 3.444029 ACATGAATTTTGGGAAGGAGGG 58.556 45.455 0.00 0.00 0.00 4.30
4136 5239 4.347607 AGACATGAATTTTGGGAAGGAGG 58.652 43.478 0.00 0.00 0.00 4.30
4137 5240 5.990120 AAGACATGAATTTTGGGAAGGAG 57.010 39.130 0.00 0.00 0.00 3.69
4138 5241 9.713684 AATATAAGACATGAATTTTGGGAAGGA 57.286 29.630 0.00 0.00 0.00 3.36
4172 5275 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
4173 5276 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
4174 5277 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
4175 5278 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
4176 5279 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
4222 5325 9.322776 CGTCTCAAAATTCTTGTCTTAGATTTG 57.677 33.333 0.00 0.00 30.65 2.32
4223 5326 8.507249 CCGTCTCAAAATTCTTGTCTTAGATTT 58.493 33.333 0.00 0.00 0.00 2.17
4224 5327 7.119846 CCCGTCTCAAAATTCTTGTCTTAGATT 59.880 37.037 0.00 0.00 0.00 2.40
4225 5328 6.595716 CCCGTCTCAAAATTCTTGTCTTAGAT 59.404 38.462 0.00 0.00 0.00 1.98
4226 5329 5.932303 CCCGTCTCAAAATTCTTGTCTTAGA 59.068 40.000 0.00 0.00 0.00 2.10
4227 5330 5.122396 CCCCGTCTCAAAATTCTTGTCTTAG 59.878 44.000 0.00 0.00 0.00 2.18
4228 5331 5.001232 CCCCGTCTCAAAATTCTTGTCTTA 58.999 41.667 0.00 0.00 0.00 2.10
4229 5332 3.821033 CCCCGTCTCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
4230 5333 3.412386 CCCCGTCTCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4231 5334 2.488153 CCCCCGTCTCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4232 5335 2.514803 CCCCCGTCTCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4249 5352 3.202373 AGTGCCTTAAGAAATACTCCCCC 59.798 47.826 3.36 0.00 0.00 5.40
4250 5353 4.505324 AGTGCCTTAAGAAATACTCCCC 57.495 45.455 3.36 0.00 0.00 4.81
4251 5354 6.236558 AGTAGTGCCTTAAGAAATACTCCC 57.763 41.667 3.36 0.00 0.00 4.30
4252 5355 8.563123 AAAAGTAGTGCCTTAAGAAATACTCC 57.437 34.615 14.55 2.55 0.00 3.85
4287 5390 7.339482 GGGATTAAACCCCATCTAGCTAATAG 58.661 42.308 9.69 0.00 43.81 1.73
4288 5391 7.266905 GGGATTAAACCCCATCTAGCTAATA 57.733 40.000 9.69 0.00 43.81 0.98
4289 5392 6.140968 GGGATTAAACCCCATCTAGCTAAT 57.859 41.667 9.69 0.00 43.81 1.73
4290 5393 5.578157 GGGATTAAACCCCATCTAGCTAA 57.422 43.478 9.69 0.00 43.81 3.09
4330 5434 4.307259 AGATCCCCCAAAAGCTATACTGA 58.693 43.478 0.00 0.00 0.00 3.41
4333 5437 5.311844 AGAAGATCCCCCAAAAGCTATAC 57.688 43.478 0.00 0.00 0.00 1.47
4337 5441 3.201045 GTCTAGAAGATCCCCCAAAAGCT 59.799 47.826 0.00 0.00 0.00 3.74
4414 5518 2.005370 AACACGGACAGAGGGAGTAA 57.995 50.000 0.00 0.00 0.00 2.24
4421 5525 3.328382 TCCCAATAAACACGGACAGAG 57.672 47.619 0.00 0.00 0.00 3.35
4427 5531 2.089201 GAGGGTTCCCAATAAACACGG 58.911 52.381 10.73 0.00 35.16 4.94
4430 5534 7.185565 TGAAATATGAGGGTTCCCAATAAACA 58.814 34.615 10.73 6.98 0.00 2.83
4441 5545 7.410174 TGGTCATACTTTGAAATATGAGGGTT 58.590 34.615 9.01 0.00 38.24 4.11
4442 5546 6.969043 TGGTCATACTTTGAAATATGAGGGT 58.031 36.000 9.01 0.00 38.24 4.34
4505 5614 5.933617 TCCAAAGAGGATTCTCACCATATG 58.066 41.667 3.21 0.00 43.07 1.78
4701 5816 5.391203 GCAGACAAATGGGATTTTTCAATGC 60.391 40.000 0.00 0.00 32.75 3.56
4726 5841 8.538701 AGAGAATCAATTCAGACAGAACATACT 58.461 33.333 5.59 0.00 36.84 2.12
4749 5864 5.860716 GCCTGCAAAGATAAGAAAAACAGAG 59.139 40.000 0.00 0.00 0.00 3.35
4750 5865 5.536161 AGCCTGCAAAGATAAGAAAAACAGA 59.464 36.000 0.00 0.00 0.00 3.41
4834 5967 8.203485 TCCAGCATTTCTTAAAAATCACAAAGT 58.797 29.630 0.00 0.00 0.00 2.66
4837 5970 7.984050 TGTTCCAGCATTTCTTAAAAATCACAA 59.016 29.630 0.00 0.00 0.00 3.33
4856 5989 3.133721 TCACAACCCCAAAATTGTTCCAG 59.866 43.478 0.00 0.00 36.92 3.86
4861 5994 3.181456 CCACATCACAACCCCAAAATTGT 60.181 43.478 0.00 0.00 39.63 2.71
4864 5997 1.347378 GCCACATCACAACCCCAAAAT 59.653 47.619 0.00 0.00 0.00 1.82
4865 5998 0.755686 GCCACATCACAACCCCAAAA 59.244 50.000 0.00 0.00 0.00 2.44
4873 6006 3.055167 ACATAGCTACTGCCACATCACAA 60.055 43.478 0.00 0.00 40.80 3.33
4951 6089 9.965824 CAAAAAGTATAACCTGAGACACAAAAT 57.034 29.630 0.00 0.00 0.00 1.82
4986 6124 7.603651 AGGCAAACACCTACGATAGATATTAG 58.396 38.462 0.00 0.00 38.67 1.73
4994 6132 4.693566 CAGAAAAGGCAAACACCTACGATA 59.306 41.667 0.00 0.00 39.93 2.92
4998 6136 2.623416 AGCAGAAAAGGCAAACACCTAC 59.377 45.455 0.00 0.00 39.93 3.18
5057 6206 6.223120 CAGGAGAAGGGGTTTTAAAATGTTG 58.777 40.000 3.52 0.00 0.00 3.33
5081 6231 3.824443 TCAAGCCTAAAGGTTTTGGTAGC 59.176 43.478 12.45 0.00 36.44 3.58
5099 6249 2.611224 GCCCAAGCAACCATTTCTCAAG 60.611 50.000 0.00 0.00 39.53 3.02
5127 6277 2.143122 TGTGCACGAGAGGACAAAATC 58.857 47.619 13.13 0.00 36.89 2.17
5132 6282 2.254546 ATTTTGTGCACGAGAGGACA 57.745 45.000 13.13 0.00 38.11 4.02
5133 6283 3.120304 GGTAATTTTGTGCACGAGAGGAC 60.120 47.826 13.13 7.63 0.00 3.85
5140 6290 1.338337 TGGGTGGTAATTTTGTGCACG 59.662 47.619 13.13 0.00 0.00 5.34
5148 6298 5.480422 GTGAAAGGAGAATGGGTGGTAATTT 59.520 40.000 0.00 0.00 0.00 1.82
5160 6313 6.931840 GTCAGTAACAGAAGTGAAAGGAGAAT 59.068 38.462 0.00 0.00 30.77 2.40
5181 6334 8.487176 GTTTAACTTTAAATTGCCATGTGTCAG 58.513 33.333 0.00 0.00 35.35 3.51
5214 6367 4.583871 ACTCCATCCTCACATCTTTTGTC 58.416 43.478 0.00 0.00 36.00 3.18
5222 6375 8.267620 TCTAAATTGATACTCCATCCTCACAT 57.732 34.615 0.00 0.00 32.09 3.21
5327 6493 4.417426 TTCTTTCATTCCGAGGATACCC 57.583 45.455 0.00 0.00 37.17 3.69
5329 6495 9.937175 CTTTAATTTCTTTCATTCCGAGGATAC 57.063 33.333 0.00 0.00 0.00 2.24
5363 6530 4.104738 TCTTCCTTCCTCCAAATGTCACTT 59.895 41.667 0.00 0.00 0.00 3.16
5377 6544 1.280421 ACATGGCAGTCTCTTCCTTCC 59.720 52.381 0.00 0.00 0.00 3.46
5389 6556 4.148079 TCTAGATCTCTACCACATGGCAG 58.852 47.826 0.00 0.00 39.32 4.85
5390 6557 4.141158 TCTCTAGATCTCTACCACATGGCA 60.141 45.833 0.00 0.00 39.32 4.92
5419 6586 9.838339 CAGTATTCTAGTCACCTTCCAAATTAT 57.162 33.333 0.00 0.00 0.00 1.28
5421 6588 6.599638 GCAGTATTCTAGTCACCTTCCAAATT 59.400 38.462 0.00 0.00 0.00 1.82
5422 6589 6.116126 GCAGTATTCTAGTCACCTTCCAAAT 58.884 40.000 0.00 0.00 0.00 2.32
5464 6632 6.490403 GGGTTTTCCTCCAACTTTGGGTTG 62.490 50.000 8.17 1.98 45.46 3.77
5467 6635 1.691976 GGGTTTTCCTCCAACTTTGGG 59.308 52.381 8.17 0.00 41.82 4.12
5472 6640 3.903530 AAGATGGGTTTTCCTCCAACT 57.096 42.857 0.00 0.00 37.70 3.16
5473 6641 4.152647 AGAAAGATGGGTTTTCCTCCAAC 58.847 43.478 0.00 0.00 40.46 3.77
5475 6643 5.796502 ATAGAAAGATGGGTTTTCCTCCA 57.203 39.130 0.00 0.00 40.46 3.86
5496 6664 6.840705 ACATGGCCATCTGGACTATTTAAAAT 59.159 34.615 17.61 0.00 45.91 1.82
5506 6674 3.319122 GGAATAAACATGGCCATCTGGAC 59.681 47.826 17.61 4.38 45.93 4.02
5616 6784 9.359653 CATAATTAATTCCTCCTCAGACCAAAT 57.640 33.333 3.39 0.00 0.00 2.32
5624 6792 7.082316 TCCTCCTCATAATTAATTCCTCCTCA 58.918 38.462 3.39 0.00 0.00 3.86
5625 6793 7.456269 TCTCCTCCTCATAATTAATTCCTCCTC 59.544 40.741 3.39 0.00 0.00 3.71
5626 6794 7.316841 TCTCCTCCTCATAATTAATTCCTCCT 58.683 38.462 3.39 0.00 0.00 3.69
5627 6795 7.560796 TCTCCTCCTCATAATTAATTCCTCC 57.439 40.000 3.39 0.00 0.00 4.30
5638 6806 9.883293 TCTAAGTTGATATTCTCCTCCTCATAA 57.117 33.333 0.00 0.00 0.00 1.90
5639 6807 9.883293 TTCTAAGTTGATATTCTCCTCCTCATA 57.117 33.333 0.00 0.00 0.00 2.15
5640 6808 8.789767 TTCTAAGTTGATATTCTCCTCCTCAT 57.210 34.615 0.00 0.00 0.00 2.90
5695 6883 2.079158 GCATATGATCCCACGATGGTG 58.921 52.381 6.97 0.03 43.99 4.17
5701 6889 1.875514 CCACTTGCATATGATCCCACG 59.124 52.381 6.97 0.00 0.00 4.94
5702 6890 2.233271 CCCACTTGCATATGATCCCAC 58.767 52.381 6.97 0.00 0.00 4.61
5707 6895 2.664402 GGGACCCACTTGCATATGAT 57.336 50.000 5.33 0.00 0.00 2.45
5723 6911 2.308722 GGCCATCAGGACAAGGGGA 61.309 63.158 0.00 0.00 45.05 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.