Multiple sequence alignment - TraesCS4B01G271500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G271500 chr4B 100.000 7288 0 0 1788 9075 547550970 547558257 0.000000e+00 13459.0
1 TraesCS4B01G271500 chr4B 100.000 1460 0 0 1 1460 547549183 547550642 0.000000e+00 2697.0
2 TraesCS4B01G271500 chr4B 100.000 30 0 0 4648 4677 547553585 547553614 1.000000e-03 56.5
3 TraesCS4B01G271500 chr4B 100.000 30 0 0 4403 4432 547553830 547553859 1.000000e-03 56.5
4 TraesCS4B01G271500 chr4D 95.812 1743 50 8 1788 3511 441482528 441484266 0.000000e+00 2793.0
5 TraesCS4B01G271500 chr4D 93.754 1713 83 15 4069 5763 441484567 441486273 0.000000e+00 2549.0
6 TraesCS4B01G271500 chr4D 95.018 1385 39 8 83 1459 441481136 441482498 0.000000e+00 2148.0
7 TraesCS4B01G271500 chr4D 93.361 1220 31 12 7388 8582 441488160 441489354 0.000000e+00 1759.0
8 TraesCS4B01G271500 chr4D 94.690 1130 48 6 6148 7273 441486812 441487933 0.000000e+00 1744.0
9 TraesCS4B01G271500 chr4D 96.907 388 12 0 5763 6150 441486322 441486709 0.000000e+00 651.0
10 TraesCS4B01G271500 chr4D 97.020 302 9 0 3622 3923 441484266 441484567 8.130000e-140 508.0
11 TraesCS4B01G271500 chr4D 82.245 490 46 14 8615 9075 441489460 441489937 1.430000e-102 385.0
12 TraesCS4B01G271500 chr4D 89.062 128 11 3 4320 4445 441485320 441485446 1.220000e-33 156.0
13 TraesCS4B01G271500 chr4D 100.000 30 0 0 4648 4677 441484902 441484931 1.000000e-03 56.5
14 TraesCS4B01G271500 chr4D 100.000 30 0 0 4403 4432 441485148 441485177 1.000000e-03 56.5
15 TraesCS4B01G271500 chr4D 100.000 30 0 0 4648 4677 441485404 441485433 1.000000e-03 56.5
16 TraesCS4B01G271500 chr4A 96.046 1669 52 5 1788 3443 26090012 26088345 0.000000e+00 2704.0
17 TraesCS4B01G271500 chr4A 94.151 1607 59 21 5763 7352 26080736 26079148 0.000000e+00 2414.0
18 TraesCS4B01G271500 chr4A 96.284 1238 29 4 226 1460 26091261 26090038 0.000000e+00 2015.0
19 TraesCS4B01G271500 chr4A 95.611 1253 30 8 7350 8582 26079017 26077770 0.000000e+00 1986.0
20 TraesCS4B01G271500 chr4A 93.429 837 41 7 4735 5568 26081754 26080929 0.000000e+00 1229.0
21 TraesCS4B01G271500 chr4A 93.166 439 26 4 3484 3922 26088346 26087912 7.680000e-180 641.0
22 TraesCS4B01G271500 chr4A 92.667 300 15 4 4390 4688 26082045 26081752 8.420000e-115 425.0
23 TraesCS4B01G271500 chr4A 81.385 462 49 21 8615 9074 26077646 26077220 8.730000e-90 342.0
24 TraesCS4B01G271500 chr4A 90.476 126 11 1 4321 4445 26081678 26081553 2.030000e-36 165.0
25 TraesCS4B01G271500 chr4A 95.122 82 4 0 5685 5766 26080863 26080782 7.390000e-26 130.0
26 TraesCS4B01G271500 chr4A 95.082 61 3 0 8583 8643 26077715 26077655 7.500000e-16 97.1
27 TraesCS4B01G271500 chr4A 100.000 30 0 0 4648 4677 26081595 26081566 1.000000e-03 56.5
28 TraesCS4B01G271500 chr4A 100.000 30 0 0 4648 4677 26082032 26082003 1.000000e-03 56.5
29 TraesCS4B01G271500 chrUn 82.955 88 13 2 4520 4607 339378023 339377938 2.720000e-10 78.7
30 TraesCS4B01G271500 chr2A 82.955 88 13 2 4520 4607 19939900 19939985 2.720000e-10 78.7
31 TraesCS4B01G271500 chr5B 82.759 87 13 2 4521 4607 381761092 381761008 9.770000e-10 76.8
32 TraesCS4B01G271500 chr2B 85.135 74 11 0 4520 4593 30620516 30620443 9.770000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G271500 chr4B 547549183 547558257 9074 False 8078.000000 13459 100.000000 1 9075 2 chr4B.!!$F1 9074
1 TraesCS4B01G271500 chr4D 441481136 441489937 8801 False 1071.875000 2793 94.822417 83 9075 12 chr4D.!!$F1 8992
2 TraesCS4B01G271500 chr4A 26087912 26091261 3349 True 1786.666667 2704 95.165333 226 3922 3 chr4A.!!$R2 3696
3 TraesCS4B01G271500 chr4A 26077220 26082045 4825 True 690.110000 2414 93.792300 4321 9074 10 chr4A.!!$R1 4753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.039617 CGCCGCTTTTCAATCCAACA 60.040 50.000 0.00 0.0 0.00 3.33 F
192 193 0.109365 CAGACGAGACTGGCTGACTG 60.109 60.000 0.67 0.0 34.64 3.51 F
658 666 0.253044 CGGGATGGTGTGAATGGACT 59.747 55.000 0.00 0.0 0.00 3.85 F
2518 2531 0.592637 TGAGAACATGGCTTTGTGCG 59.407 50.000 0.00 0.0 44.05 5.34 F
4178 4216 0.877071 GGACGGACTTAGACACGACA 59.123 55.000 0.00 0.0 0.00 4.35 F
4325 4363 2.884320 TCACACTAAGGACTGCCACTA 58.116 47.619 0.00 0.0 36.29 2.74 F
5458 5514 0.320050 TTTTGCGATCCCCAAAAGCC 59.680 50.000 12.42 0.0 37.28 4.35 F
6480 6694 0.748005 GCCAGGTGTATTGTGCGGAT 60.748 55.000 0.00 0.0 0.00 4.18 F
7189 7406 1.001974 CAGCGGGGCATAGCTTGTATA 59.998 52.381 0.00 0.0 42.52 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 1839 0.461961 GAGACGGGATCCAACTCCTG 59.538 60.000 15.23 0.0 45.70 3.86 R
2518 2531 8.986477 AAGCAAATTAAGGTGACATAACAATC 57.014 30.769 0.00 0.0 0.00 2.67 R
2743 2756 1.392589 CTCAGTGGTGGCAAACTGTT 58.607 50.000 23.41 0.0 43.49 3.16 R
4566 4605 1.069978 TCACTCATTTCAGTCCGCACA 59.930 47.619 0.00 0.0 0.00 4.57 R
5045 5098 0.036732 GATGGCTTGTGGAGTGGTGA 59.963 55.000 0.00 0.0 0.00 4.02 R
6480 6694 0.106918 AGAACAAGGGCAAACCGTCA 60.107 50.000 0.00 0.0 46.96 4.35 R
7280 7499 0.259938 GGTTGGCCATCAAGGAGGAT 59.740 55.000 6.09 0.0 41.22 3.24 R
7595 8102 1.909532 CGTGTACGACTAAGGAAAGCG 59.090 52.381 0.00 0.0 43.02 4.68 R
8925 9593 0.098728 CGCACCATCCTTTTTAGGCG 59.901 55.000 0.00 0.0 37.17 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.757699 CTGACCTAGCCAGTAAGTCCC 59.242 57.143 3.10 0.00 0.00 4.46
28 29 1.121378 GACCTAGCCAGTAAGTCCCC 58.879 60.000 0.00 0.00 0.00 4.81
29 30 0.686769 ACCTAGCCAGTAAGTCCCCG 60.687 60.000 0.00 0.00 0.00 5.73
30 31 1.442148 CTAGCCAGTAAGTCCCCGC 59.558 63.158 0.00 0.00 0.00 6.13
31 32 2.029307 CTAGCCAGTAAGTCCCCGCC 62.029 65.000 0.00 0.00 0.00 6.13
32 33 4.832608 GCCAGTAAGTCCCCGCCG 62.833 72.222 0.00 0.00 0.00 6.46
33 34 4.832608 CCAGTAAGTCCCCGCCGC 62.833 72.222 0.00 0.00 0.00 6.53
34 35 4.832608 CAGTAAGTCCCCGCCGCC 62.833 72.222 0.00 0.00 0.00 6.13
36 37 4.091939 GTAAGTCCCCGCCGCCTT 62.092 66.667 0.00 0.00 0.00 4.35
37 38 3.324108 TAAGTCCCCGCCGCCTTT 61.324 61.111 0.00 0.00 0.00 3.11
38 39 3.615509 TAAGTCCCCGCCGCCTTTG 62.616 63.158 0.00 0.00 0.00 2.77
47 48 2.361610 CCGCCTTTGCCACTGGAT 60.362 61.111 0.00 0.00 0.00 3.41
48 49 2.409870 CCGCCTTTGCCACTGGATC 61.410 63.158 0.00 0.00 0.00 3.36
49 50 1.675310 CGCCTTTGCCACTGGATCA 60.675 57.895 0.00 0.00 0.00 2.92
50 51 1.651240 CGCCTTTGCCACTGGATCAG 61.651 60.000 0.00 0.00 37.52 2.90
51 52 1.318158 GCCTTTGCCACTGGATCAGG 61.318 60.000 0.00 0.98 35.51 3.86
52 53 0.329261 CCTTTGCCACTGGATCAGGA 59.671 55.000 0.00 0.00 35.51 3.86
53 54 1.272092 CCTTTGCCACTGGATCAGGAA 60.272 52.381 0.00 0.00 35.51 3.36
54 55 2.622452 CCTTTGCCACTGGATCAGGAAT 60.622 50.000 0.00 0.00 35.51 3.01
55 56 2.425143 TTGCCACTGGATCAGGAATC 57.575 50.000 0.00 0.00 35.51 2.52
56 57 0.178767 TGCCACTGGATCAGGAATCG 59.821 55.000 0.00 0.00 35.51 3.34
57 58 0.179000 GCCACTGGATCAGGAATCGT 59.821 55.000 0.00 0.00 35.51 3.73
58 59 1.412710 GCCACTGGATCAGGAATCGTA 59.587 52.381 0.00 0.00 35.51 3.43
59 60 2.546795 GCCACTGGATCAGGAATCGTAG 60.547 54.545 0.00 0.00 35.51 3.51
60 61 2.036475 CCACTGGATCAGGAATCGTAGG 59.964 54.545 0.00 0.00 35.51 3.18
61 62 1.689273 ACTGGATCAGGAATCGTAGGC 59.311 52.381 0.00 0.00 35.51 3.93
62 63 1.967066 CTGGATCAGGAATCGTAGGCT 59.033 52.381 0.00 0.00 34.99 4.58
63 64 1.688735 TGGATCAGGAATCGTAGGCTG 59.311 52.381 0.00 0.00 34.99 4.85
64 65 1.964223 GGATCAGGAATCGTAGGCTGA 59.036 52.381 0.00 0.00 34.99 4.26
65 66 2.029470 GGATCAGGAATCGTAGGCTGAG 60.029 54.545 0.00 0.00 34.99 3.35
66 67 2.437085 TCAGGAATCGTAGGCTGAGA 57.563 50.000 0.00 0.00 0.00 3.27
67 68 2.950781 TCAGGAATCGTAGGCTGAGAT 58.049 47.619 0.00 0.00 0.00 2.75
68 69 3.300388 TCAGGAATCGTAGGCTGAGATT 58.700 45.455 15.82 15.82 37.32 2.40
69 70 3.319405 TCAGGAATCGTAGGCTGAGATTC 59.681 47.826 25.50 25.50 45.56 2.52
70 71 2.294791 AGGAATCGTAGGCTGAGATTCG 59.705 50.000 25.95 11.62 46.60 3.34
71 72 2.034812 GGAATCGTAGGCTGAGATTCGT 59.965 50.000 25.95 7.96 46.60 3.85
72 73 3.301706 GAATCGTAGGCTGAGATTCGTC 58.698 50.000 22.04 8.73 40.23 4.20
73 74 1.746470 TCGTAGGCTGAGATTCGTCA 58.254 50.000 0.00 0.00 0.00 4.35
74 75 2.089201 TCGTAGGCTGAGATTCGTCAA 58.911 47.619 0.00 0.00 0.00 3.18
75 76 2.490509 TCGTAGGCTGAGATTCGTCAAA 59.509 45.455 0.00 0.00 0.00 2.69
76 77 2.599082 CGTAGGCTGAGATTCGTCAAAC 59.401 50.000 0.00 0.00 0.00 2.93
77 78 2.100605 AGGCTGAGATTCGTCAAACC 57.899 50.000 0.00 0.00 0.00 3.27
78 79 1.347707 AGGCTGAGATTCGTCAAACCA 59.652 47.619 0.00 0.00 0.00 3.67
79 80 1.464997 GGCTGAGATTCGTCAAACCAC 59.535 52.381 0.00 0.00 0.00 4.16
80 81 2.417719 GCTGAGATTCGTCAAACCACT 58.582 47.619 0.00 0.00 0.00 4.00
81 82 2.158449 GCTGAGATTCGTCAAACCACTG 59.842 50.000 0.00 0.00 0.00 3.66
82 83 3.393800 CTGAGATTCGTCAAACCACTGT 58.606 45.455 0.00 0.00 0.00 3.55
83 84 3.804036 TGAGATTCGTCAAACCACTGTT 58.196 40.909 0.00 0.00 35.82 3.16
84 85 3.807622 TGAGATTCGTCAAACCACTGTTC 59.192 43.478 0.00 0.00 32.15 3.18
85 86 3.139077 AGATTCGTCAAACCACTGTTCC 58.861 45.455 0.00 0.00 32.15 3.62
86 87 1.670791 TTCGTCAAACCACTGTTCCC 58.329 50.000 0.00 0.00 32.15 3.97
87 88 0.531090 TCGTCAAACCACTGTTCCCG 60.531 55.000 0.00 0.00 32.15 5.14
88 89 0.812412 CGTCAAACCACTGTTCCCGT 60.812 55.000 0.00 0.00 32.15 5.28
89 90 1.538634 CGTCAAACCACTGTTCCCGTA 60.539 52.381 0.00 0.00 32.15 4.02
90 91 2.774687 GTCAAACCACTGTTCCCGTAT 58.225 47.619 0.00 0.00 32.15 3.06
99 100 3.924686 CACTGTTCCCGTATACTGTTCAC 59.075 47.826 0.56 0.00 0.00 3.18
102 103 3.827876 TGTTCCCGTATACTGTTCACAGA 59.172 43.478 14.00 0.00 46.59 3.41
133 134 5.243507 TGTTAAGCACATCAATGTTGACCAT 59.756 36.000 0.00 0.00 40.49 3.55
139 140 5.335897 GCACATCAATGTTGACCATACTGTT 60.336 40.000 0.00 0.00 40.49 3.16
147 148 1.299541 GACCATACTGTTGCATCCGG 58.700 55.000 0.00 0.00 0.00 5.14
151 152 1.935873 CATACTGTTGCATCCGGTCTG 59.064 52.381 0.00 1.34 0.00 3.51
165 166 1.206831 GTCTGAACCGCCGCTTTTC 59.793 57.895 0.00 0.00 0.00 2.29
174 175 0.039617 CGCCGCTTTTCAATCCAACA 60.040 50.000 0.00 0.00 0.00 3.33
183 184 4.336889 TTTCAATCCAACAGACGAGACT 57.663 40.909 0.00 0.00 0.00 3.24
184 185 3.303881 TCAATCCAACAGACGAGACTG 57.696 47.619 0.00 1.34 42.78 3.51
185 186 2.029020 TCAATCCAACAGACGAGACTGG 60.029 50.000 7.40 2.59 41.59 4.00
186 187 0.247736 ATCCAACAGACGAGACTGGC 59.752 55.000 7.40 0.00 41.59 4.85
187 188 0.827925 TCCAACAGACGAGACTGGCT 60.828 55.000 7.40 0.00 41.59 4.75
188 189 0.668706 CCAACAGACGAGACTGGCTG 60.669 60.000 7.40 6.30 41.59 4.85
189 190 0.315251 CAACAGACGAGACTGGCTGA 59.685 55.000 12.88 0.00 41.59 4.26
190 191 0.315568 AACAGACGAGACTGGCTGAC 59.684 55.000 12.88 0.00 41.59 3.51
191 192 0.538516 ACAGACGAGACTGGCTGACT 60.539 55.000 12.88 0.00 41.59 3.41
192 193 0.109365 CAGACGAGACTGGCTGACTG 60.109 60.000 0.67 0.00 34.64 3.51
200 201 1.073722 CTGGCTGACTGGGCAAAGA 59.926 57.895 0.00 0.00 41.12 2.52
217 218 4.261489 GCAAAGATAGCGGTACTGTAGCTA 60.261 45.833 14.34 12.10 45.90 3.32
280 288 3.424962 GCAACCAGAGTAACATTTCTCGC 60.425 47.826 0.00 0.00 36.03 5.03
281 289 3.678056 ACCAGAGTAACATTTCTCGCA 57.322 42.857 0.00 0.00 36.03 5.10
282 290 4.207891 ACCAGAGTAACATTTCTCGCAT 57.792 40.909 0.00 0.00 36.03 4.73
283 291 4.579869 ACCAGAGTAACATTTCTCGCATT 58.420 39.130 0.00 0.00 36.03 3.56
284 292 5.730550 ACCAGAGTAACATTTCTCGCATTA 58.269 37.500 0.00 0.00 36.03 1.90
285 293 5.581085 ACCAGAGTAACATTTCTCGCATTAC 59.419 40.000 0.00 0.00 36.03 1.89
286 294 5.812642 CCAGAGTAACATTTCTCGCATTACT 59.187 40.000 0.00 0.00 38.48 2.24
287 295 6.019479 CCAGAGTAACATTTCTCGCATTACTC 60.019 42.308 12.41 12.41 46.33 2.59
288 296 5.950965 AGTAACATTTCTCGCATTACTCG 57.049 39.130 0.00 0.00 31.96 4.18
423 431 3.943479 TTTGCCCGGACGTGGATCG 62.943 63.158 0.73 0.00 46.00 3.69
658 666 0.253044 CGGGATGGTGTGAATGGACT 59.747 55.000 0.00 0.00 0.00 3.85
697 705 3.989787 CCTTTTGTGCCCCACCGC 61.990 66.667 0.00 0.00 32.73 5.68
735 743 4.444838 CGTCCATTCCGCCCGTGA 62.445 66.667 0.00 0.00 0.00 4.35
736 744 2.511600 GTCCATTCCGCCCGTGAG 60.512 66.667 0.00 0.00 0.00 3.51
737 745 2.682136 TCCATTCCGCCCGTGAGA 60.682 61.111 0.00 0.00 0.00 3.27
738 746 2.267642 CCATTCCGCCCGTGAGAA 59.732 61.111 0.00 0.00 0.00 2.87
739 747 1.815421 CCATTCCGCCCGTGAGAAG 60.815 63.158 0.00 0.00 0.00 2.85
863 871 2.375146 GCAATATTTGGAACCCTCGGT 58.625 47.619 0.00 0.00 37.65 4.69
890 898 2.180159 GACCCATGCCGTACCACTGT 62.180 60.000 0.00 0.00 0.00 3.55
954 963 0.859232 CCTCCGCGTTTATTCATCGG 59.141 55.000 4.92 0.00 41.30 4.18
1337 1346 8.190122 TGCTTGATTCATTTACGATTTATTGCT 58.810 29.630 0.00 0.00 0.00 3.91
1350 1359 7.180079 ACGATTTATTGCTGTTAGATTTCGTG 58.820 34.615 0.00 0.00 34.13 4.35
2518 2531 0.592637 TGAGAACATGGCTTTGTGCG 59.407 50.000 0.00 0.00 44.05 5.34
2622 2635 1.073923 TGGTCTTCAAGCCCTTCCTTC 59.926 52.381 0.00 0.00 0.00 3.46
2919 2940 3.697982 CTGGTTTTACACGGTGGTTTTC 58.302 45.455 13.48 0.21 0.00 2.29
2976 2997 8.195165 TGCTACTATAATCCAGCAGTCTATTT 57.805 34.615 0.00 0.00 39.03 1.40
2984 3005 4.985538 TCCAGCAGTCTATTTGGAAACTT 58.014 39.130 0.00 0.00 36.81 2.66
2985 3006 4.761739 TCCAGCAGTCTATTTGGAAACTTG 59.238 41.667 0.00 0.00 36.81 3.16
3057 3078 2.151502 TGAGTGGGAGATGGAGAGTC 57.848 55.000 0.00 0.00 0.00 3.36
3154 3176 8.012957 TGTTTAGTAATGGTGTGGTTGATTTT 57.987 30.769 0.00 0.00 0.00 1.82
3191 3213 7.801104 ACATTGGATGTATAGTTATGGTGTGA 58.199 34.615 0.00 0.00 42.78 3.58
3242 3264 7.573968 ACATCATGCCTAGAAAATTTAGACC 57.426 36.000 0.00 0.00 0.00 3.85
3278 3300 1.086696 CAGTTGCATCGGAATTCGGT 58.913 50.000 12.22 0.00 39.77 4.69
3295 3317 3.071479 TCGGTTCCTGCACATCTTAAAC 58.929 45.455 0.00 0.00 0.00 2.01
3353 3375 4.019321 TCTTTCTTCCCCTGTTACCTGATG 60.019 45.833 0.00 0.00 0.00 3.07
3433 3455 7.938490 AGCCTTTTGTTGTGGATTTCAATAAAT 59.062 29.630 0.00 0.00 36.41 1.40
3463 3500 7.390027 AGCTGAGAACTTGTATTCTGTGTAAT 58.610 34.615 0.00 0.00 39.08 1.89
3510 3548 6.649436 CCATACACAAATAGTAGCATTGACG 58.351 40.000 0.00 0.00 0.00 4.35
3557 3595 7.229308 AGAGCCTCAATCTATGCAATTATTCA 58.771 34.615 0.00 0.00 0.00 2.57
3560 3598 7.668469 AGCCTCAATCTATGCAATTATTCATGA 59.332 33.333 0.00 0.00 0.00 3.07
3568 3606 9.108284 TCTATGCAATTATTCATGAACTTTCGA 57.892 29.630 11.07 0.00 0.00 3.71
3578 3616 4.282449 TCATGAACTTTCGAACTCTACCCA 59.718 41.667 0.00 0.00 0.00 4.51
3598 3636 7.133133 ACCCATGATAGTTAGTTAATTCGGT 57.867 36.000 0.00 0.00 0.00 4.69
3602 3640 6.897259 TGATAGTTAGTTAATTCGGTGCAC 57.103 37.500 8.80 8.80 0.00 4.57
3724 3762 2.790433 TCACTTCCTAACATTGGCACC 58.210 47.619 0.00 0.00 0.00 5.01
3787 3825 3.684788 GTCGTCTTAGGATGTGTGCATTT 59.315 43.478 0.00 0.00 35.07 2.32
3848 3886 8.248253 ACACCAAGATAATTTAAATTCCGGTTC 58.752 33.333 16.56 7.81 0.00 3.62
3873 3911 5.575606 GGATGCAACTTGAACATGAATTGAG 59.424 40.000 0.00 0.00 0.00 3.02
3922 3960 3.660501 TCACGTGCTTCTGTACTTGAT 57.339 42.857 11.67 0.00 33.63 2.57
3923 3961 3.990092 TCACGTGCTTCTGTACTTGATT 58.010 40.909 11.67 0.00 33.63 2.57
3924 3962 3.740832 TCACGTGCTTCTGTACTTGATTG 59.259 43.478 11.67 0.00 33.63 2.67
3925 3963 3.494626 CACGTGCTTCTGTACTTGATTGT 59.505 43.478 0.82 0.00 31.63 2.71
3926 3964 4.024893 CACGTGCTTCTGTACTTGATTGTT 60.025 41.667 0.82 0.00 31.63 2.83
3927 3965 5.176774 CACGTGCTTCTGTACTTGATTGTTA 59.823 40.000 0.82 0.00 31.63 2.41
3928 3966 5.405571 ACGTGCTTCTGTACTTGATTGTTAG 59.594 40.000 0.00 0.00 0.00 2.34
3929 3967 5.633601 CGTGCTTCTGTACTTGATTGTTAGA 59.366 40.000 0.00 0.00 0.00 2.10
3930 3968 6.183360 CGTGCTTCTGTACTTGATTGTTAGAG 60.183 42.308 0.00 0.00 0.00 2.43
3931 3969 6.647067 GTGCTTCTGTACTTGATTGTTAGAGT 59.353 38.462 0.00 0.00 0.00 3.24
3932 3970 7.171678 GTGCTTCTGTACTTGATTGTTAGAGTT 59.828 37.037 0.00 0.00 0.00 3.01
3933 3971 7.715249 TGCTTCTGTACTTGATTGTTAGAGTTT 59.285 33.333 0.00 0.00 0.00 2.66
3934 3972 8.224437 GCTTCTGTACTTGATTGTTAGAGTTTC 58.776 37.037 0.00 0.00 0.00 2.78
3935 3973 9.261180 CTTCTGTACTTGATTGTTAGAGTTTCA 57.739 33.333 0.00 0.00 0.00 2.69
3936 3974 9.607988 TTCTGTACTTGATTGTTAGAGTTTCAA 57.392 29.630 0.00 0.00 0.00 2.69
3937 3975 9.261180 TCTGTACTTGATTGTTAGAGTTTCAAG 57.739 33.333 8.90 8.90 45.49 3.02
3938 3976 9.261180 CTGTACTTGATTGTTAGAGTTTCAAGA 57.739 33.333 15.60 0.36 43.72 3.02
3939 3977 9.261180 TGTACTTGATTGTTAGAGTTTCAAGAG 57.739 33.333 15.60 0.00 43.72 2.85
3940 3978 9.477484 GTACTTGATTGTTAGAGTTTCAAGAGA 57.523 33.333 15.60 3.18 43.72 3.10
3941 3979 8.964476 ACTTGATTGTTAGAGTTTCAAGAGAA 57.036 30.769 15.60 0.00 43.72 2.87
3942 3980 9.566432 ACTTGATTGTTAGAGTTTCAAGAGAAT 57.434 29.630 15.60 0.00 43.72 2.40
3943 3981 9.823098 CTTGATTGTTAGAGTTTCAAGAGAATG 57.177 33.333 5.29 0.00 43.72 2.67
3944 3982 8.327941 TGATTGTTAGAGTTTCAAGAGAATGG 57.672 34.615 0.00 0.00 32.89 3.16
3945 3983 8.156820 TGATTGTTAGAGTTTCAAGAGAATGGA 58.843 33.333 0.00 0.00 32.89 3.41
3946 3984 8.924511 ATTGTTAGAGTTTCAAGAGAATGGAA 57.075 30.769 0.00 0.00 32.89 3.53
3947 3985 8.746052 TTGTTAGAGTTTCAAGAGAATGGAAA 57.254 30.769 0.00 0.00 32.89 3.13
3948 3986 8.924511 TGTTAGAGTTTCAAGAGAATGGAAAT 57.075 30.769 0.00 0.00 33.58 2.17
3953 3991 9.972106 AGAGTTTCAAGAGAATGGAAATAGAAT 57.028 29.630 0.00 0.00 33.58 2.40
3955 3993 9.972106 AGTTTCAAGAGAATGGAAATAGAATCT 57.028 29.630 0.00 0.00 33.58 2.40
3958 3996 9.964354 TTCAAGAGAATGGAAATAGAATCTTGA 57.036 29.630 9.55 9.55 45.70 3.02
3977 4015 9.732130 AATCTTGATAAGCTAATTCCTGTATCC 57.268 33.333 0.00 0.00 0.00 2.59
3978 4016 8.262601 TCTTGATAAGCTAATTCCTGTATCCA 57.737 34.615 0.00 0.00 0.00 3.41
3979 4017 8.884323 TCTTGATAAGCTAATTCCTGTATCCAT 58.116 33.333 0.00 0.00 0.00 3.41
3980 4018 9.512588 CTTGATAAGCTAATTCCTGTATCCATT 57.487 33.333 0.00 0.00 0.00 3.16
3982 4020 9.944376 TGATAAGCTAATTCCTGTATCCATTAC 57.056 33.333 0.00 0.00 0.00 1.89
3983 4021 9.944376 GATAAGCTAATTCCTGTATCCATTACA 57.056 33.333 0.00 0.00 38.50 2.41
3986 4024 9.646522 AAGCTAATTCCTGTATCCATTACAAAT 57.353 29.630 0.00 0.00 40.27 2.32
3987 4025 9.071276 AGCTAATTCCTGTATCCATTACAAATG 57.929 33.333 0.00 0.00 40.27 2.32
3988 4026 7.809806 GCTAATTCCTGTATCCATTACAAATGC 59.190 37.037 0.00 0.00 40.27 3.56
3989 4027 7.902920 AATTCCTGTATCCATTACAAATGCT 57.097 32.000 0.00 0.00 40.27 3.79
3990 4028 8.995027 AATTCCTGTATCCATTACAAATGCTA 57.005 30.769 0.00 0.00 40.27 3.49
3991 4029 8.995027 ATTCCTGTATCCATTACAAATGCTAA 57.005 30.769 0.00 0.00 40.27 3.09
3992 4030 8.995027 TTCCTGTATCCATTACAAATGCTAAT 57.005 30.769 0.00 0.00 40.27 1.73
3993 4031 8.394971 TCCTGTATCCATTACAAATGCTAATG 57.605 34.615 0.00 0.00 40.27 1.90
3994 4032 7.998383 TCCTGTATCCATTACAAATGCTAATGT 59.002 33.333 11.34 0.00 40.27 2.71
3995 4033 8.632679 CCTGTATCCATTACAAATGCTAATGTT 58.367 33.333 11.34 5.36 40.27 2.71
3996 4034 9.669353 CTGTATCCATTACAAATGCTAATGTTC 57.331 33.333 11.34 0.00 40.27 3.18
3997 4035 8.341903 TGTATCCATTACAAATGCTAATGTTCG 58.658 33.333 11.34 0.00 37.87 3.95
3998 4036 6.993786 TCCATTACAAATGCTAATGTTCGA 57.006 33.333 11.34 0.00 31.97 3.71
3999 4037 7.015226 TCCATTACAAATGCTAATGTTCGAG 57.985 36.000 11.34 0.00 31.97 4.04
4000 4038 6.597672 TCCATTACAAATGCTAATGTTCGAGT 59.402 34.615 11.34 0.00 31.97 4.18
4001 4039 7.766738 TCCATTACAAATGCTAATGTTCGAGTA 59.233 33.333 11.34 0.00 31.97 2.59
4002 4040 8.394877 CCATTACAAATGCTAATGTTCGAGTAA 58.605 33.333 11.34 0.00 31.97 2.24
4003 4041 9.425893 CATTACAAATGCTAATGTTCGAGTAAG 57.574 33.333 0.00 0.00 30.11 2.34
4004 4042 8.766000 TTACAAATGCTAATGTTCGAGTAAGA 57.234 30.769 0.00 0.00 0.00 2.10
4005 4043 7.061752 ACAAATGCTAATGTTCGAGTAAGAC 57.938 36.000 0.00 0.00 0.00 3.01
4006 4044 6.649141 ACAAATGCTAATGTTCGAGTAAGACA 59.351 34.615 0.00 0.00 0.00 3.41
4007 4045 7.172532 ACAAATGCTAATGTTCGAGTAAGACAA 59.827 33.333 0.00 0.00 0.00 3.18
4008 4046 6.648725 ATGCTAATGTTCGAGTAAGACAAC 57.351 37.500 0.00 0.00 0.00 3.32
4009 4047 5.779922 TGCTAATGTTCGAGTAAGACAACT 58.220 37.500 0.00 0.00 0.00 3.16
4010 4048 6.916440 TGCTAATGTTCGAGTAAGACAACTA 58.084 36.000 0.00 0.00 0.00 2.24
4011 4049 6.805271 TGCTAATGTTCGAGTAAGACAACTAC 59.195 38.462 0.00 0.00 0.00 2.73
4012 4050 6.805271 GCTAATGTTCGAGTAAGACAACTACA 59.195 38.462 0.00 0.00 0.00 2.74
4013 4051 7.488471 GCTAATGTTCGAGTAAGACAACTACAT 59.512 37.037 0.00 0.00 30.88 2.29
4014 4052 9.999009 CTAATGTTCGAGTAAGACAACTACATA 57.001 33.333 0.00 0.00 29.97 2.29
4015 4053 8.912787 AATGTTCGAGTAAGACAACTACATAG 57.087 34.615 0.00 0.00 29.97 2.23
4016 4054 7.444629 TGTTCGAGTAAGACAACTACATAGT 57.555 36.000 0.00 0.00 38.39 2.12
4017 4055 8.552083 TGTTCGAGTAAGACAACTACATAGTA 57.448 34.615 0.00 0.00 34.99 1.82
4018 4056 8.663025 TGTTCGAGTAAGACAACTACATAGTAG 58.337 37.037 2.79 2.79 34.99 2.57
4019 4057 8.877779 GTTCGAGTAAGACAACTACATAGTAGA 58.122 37.037 10.87 0.00 34.99 2.59
4020 4058 9.440773 TTCGAGTAAGACAACTACATAGTAGAA 57.559 33.333 10.87 0.00 34.99 2.10
4021 4059 9.440773 TCGAGTAAGACAACTACATAGTAGAAA 57.559 33.333 10.87 0.00 34.99 2.52
4050 4088 9.955102 TTCTGGATAATGATGATTGGAATAGAG 57.045 33.333 0.00 0.00 0.00 2.43
4051 4089 9.330220 TCTGGATAATGATGATTGGAATAGAGA 57.670 33.333 0.00 0.00 0.00 3.10
4052 4090 9.955102 CTGGATAATGATGATTGGAATAGAGAA 57.045 33.333 0.00 0.00 0.00 2.87
4169 4207 4.040706 AGTGGTTTGTATTGGACGGACTTA 59.959 41.667 0.00 0.00 0.00 2.24
4174 4212 4.445452 TGTATTGGACGGACTTAGACAC 57.555 45.455 0.00 0.00 0.00 3.67
4178 4216 0.877071 GGACGGACTTAGACACGACA 59.123 55.000 0.00 0.00 0.00 4.35
4201 4239 4.141846 ACTCTGGACATCGATAGCAACATT 60.142 41.667 0.00 0.00 0.00 2.71
4204 4242 5.294306 TCTGGACATCGATAGCAACATTTTC 59.706 40.000 0.00 0.00 0.00 2.29
4205 4243 4.940654 TGGACATCGATAGCAACATTTTCA 59.059 37.500 0.00 0.00 0.00 2.69
4206 4244 5.589855 TGGACATCGATAGCAACATTTTCAT 59.410 36.000 0.00 0.00 0.00 2.57
4207 4245 5.911280 GGACATCGATAGCAACATTTTCATG 59.089 40.000 0.00 0.00 36.34 3.07
4220 4258 6.939132 ACATTTTCATGAAAACAATTGGCA 57.061 29.167 30.64 10.33 42.32 4.92
4223 4261 9.064706 ACATTTTCATGAAAACAATTGGCATTA 57.935 25.926 30.64 8.97 42.32 1.90
4325 4363 2.884320 TCACACTAAGGACTGCCACTA 58.116 47.619 0.00 0.00 36.29 2.74
4352 4391 8.548721 GTGGATAACATGAATTTAGGAAGTACG 58.451 37.037 0.00 0.00 0.00 3.67
4354 4393 7.441458 GGATAACATGAATTTAGGAAGTACGCT 59.559 37.037 0.00 0.00 0.00 5.07
4368 4407 4.755266 AGTACGCTGTCCCTGAAATAAT 57.245 40.909 0.00 0.00 0.00 1.28
4373 4412 6.665992 ACGCTGTCCCTGAAATAATATCTA 57.334 37.500 0.00 0.00 0.00 1.98
4569 4608 9.948964 TTTGGATATCTCAATATGGACTATGTG 57.051 33.333 2.05 0.00 0.00 3.21
4704 4744 3.065925 GCGCTGCCTTCTCATTAAGAAAT 59.934 43.478 0.00 0.00 43.39 2.17
4765 4816 3.866651 TGTTTTTGGGTGGAACATGTTG 58.133 40.909 17.58 0.00 44.52 3.33
4796 4847 3.057174 CGTCTCTCAAAGGACTACTGCTT 60.057 47.826 0.00 0.00 0.00 3.91
4836 4887 6.868339 CACCAGTGCGATAACATGAATATAGA 59.132 38.462 0.00 0.00 0.00 1.98
5045 5098 2.774234 ACCTGTAACATCTATGCTGGCT 59.226 45.455 0.00 0.00 0.00 4.75
5139 5192 6.937465 TGTATCAACACTTTATTGGTAGCACA 59.063 34.615 0.00 0.00 0.00 4.57
5248 5302 6.862090 AGTTGAAGACTGTCACTCGTATTTAC 59.138 38.462 10.88 0.00 37.17 2.01
5249 5303 6.321848 TGAAGACTGTCACTCGTATTTACA 57.678 37.500 10.88 0.00 0.00 2.41
5294 5348 8.572185 CGCTGCTATATATATAGTCAATGGTCT 58.428 37.037 24.32 0.00 38.30 3.85
5315 5369 8.098912 TGGTCTTCACTTTAAAGGAACCTATAC 58.901 37.037 19.14 6.83 0.00 1.47
5368 5422 6.017440 AGCGTTGACATAGAAAAGCAAGTTAA 60.017 34.615 0.00 0.00 33.87 2.01
5451 5507 2.297701 TGCTAGAATTTTGCGATCCCC 58.702 47.619 0.00 0.00 0.00 4.81
5458 5514 0.320050 TTTTGCGATCCCCAAAAGCC 59.680 50.000 12.42 0.00 37.28 4.35
5462 5518 2.362375 GATCCCCAAAAGCCGCCA 60.362 61.111 0.00 0.00 0.00 5.69
5480 5536 4.183101 CGCCATTTTGGACATTAGCAATT 58.817 39.130 0.00 0.00 40.96 2.32
5486 5542 8.732531 CCATTTTGGACATTAGCAATTTCAAAT 58.267 29.630 0.00 0.00 40.96 2.32
5577 5633 6.785076 TGTCCCAAAAAGTACTTCCATGATA 58.215 36.000 8.95 0.00 0.00 2.15
5647 5703 6.631016 TGTCAACATAGAGACCTAACATGAC 58.369 40.000 0.00 0.00 36.34 3.06
5648 5704 6.210584 TGTCAACATAGAGACCTAACATGACA 59.789 38.462 0.00 0.00 39.46 3.58
5650 5706 7.063544 GTCAACATAGAGACCTAACATGACAAC 59.936 40.741 0.00 0.00 36.12 3.32
5671 5727 1.939980 ATTAGGGTATCGGAGGGAGC 58.060 55.000 0.00 0.00 0.00 4.70
5737 5793 9.109393 TGTGATTAAGCTTTCTCATATTGTACC 57.891 33.333 3.20 0.00 0.00 3.34
5999 6108 2.039084 GAGAGTGGTATGGCCCATAAGG 59.961 54.545 4.67 0.00 36.74 2.69
6014 6123 3.511146 CCATAAGGTTGCCAAGTGAATGT 59.489 43.478 0.00 0.00 0.00 2.71
6072 6181 4.042311 AGGCAGGAGATCGATCTAGTTAGA 59.958 45.833 27.36 0.00 37.25 2.10
6206 6420 3.197983 AGTCATATTCCCTGTCCCCAAA 58.802 45.455 0.00 0.00 0.00 3.28
6260 6474 1.743252 GCCTCACTCCTTGAAGCCG 60.743 63.158 0.00 0.00 35.85 5.52
6289 6503 2.615986 TGCTACACTCCTTGGTCCTA 57.384 50.000 0.00 0.00 0.00 2.94
6305 6519 3.904339 GGTCCTAAGATCCTTATCAGCCA 59.096 47.826 0.00 0.00 34.28 4.75
6394 6608 5.472137 AGCTAACAAATGGCTCGTTAAAAGA 59.528 36.000 0.00 0.00 43.21 2.52
6441 6655 4.335037 GGAGCCATTTCTCTTTTCTGCTAG 59.665 45.833 0.00 0.00 33.70 3.42
6480 6694 0.748005 GCCAGGTGTATTGTGCGGAT 60.748 55.000 0.00 0.00 0.00 4.18
6482 6696 1.406751 CCAGGTGTATTGTGCGGATGA 60.407 52.381 0.00 0.00 0.00 2.92
6495 6709 1.883021 GGATGACGGTTTGCCCTTG 59.117 57.895 0.00 0.00 0.00 3.61
6863 7078 8.918202 AAGTACAGGTAATCAATTTTCTGACA 57.082 30.769 0.00 0.00 0.00 3.58
6949 7166 4.483476 AACAACCGATTAAGCACAACTC 57.517 40.909 0.00 0.00 0.00 3.01
6990 7207 9.970553 ATGATATTCTAACATATCTTGCCATGT 57.029 29.630 0.00 0.00 37.14 3.21
7041 7258 6.484364 TCCAAAGAAAATGGCTTCTCTTTT 57.516 33.333 7.35 0.00 36.28 2.27
7052 7269 4.201910 TGGCTTCTCTTTTTGAACTCAACG 60.202 41.667 0.00 0.00 35.28 4.10
7189 7406 1.001974 CAGCGGGGCATAGCTTGTATA 59.998 52.381 0.00 0.00 42.52 1.47
7190 7407 1.909302 AGCGGGGCATAGCTTGTATAT 59.091 47.619 0.00 0.00 41.52 0.86
7273 7492 9.396022 TGTCCAGATTATCCTTCTTGTTTATTC 57.604 33.333 0.00 0.00 0.00 1.75
7274 7493 9.620259 GTCCAGATTATCCTTCTTGTTTATTCT 57.380 33.333 0.00 0.00 0.00 2.40
7294 7520 4.526970 TCTTGTTTATCCTCCTTGATGGC 58.473 43.478 0.00 0.00 35.26 4.40
7516 8023 8.774586 AGATTGCACTTTTAAACACTACTACAG 58.225 33.333 0.00 0.00 0.00 2.74
7531 8038 4.021102 ACTACAGTTGGCAGCTTATTGT 57.979 40.909 0.00 0.00 0.00 2.71
7532 8039 4.003648 ACTACAGTTGGCAGCTTATTGTC 58.996 43.478 0.00 0.00 0.00 3.18
7595 8102 0.798776 CACATTCCAGTTCACTCGCC 59.201 55.000 0.00 0.00 0.00 5.54
7620 8127 6.433766 GCTTTCCTTAGTCGTACACGTATAT 58.566 40.000 1.19 0.00 40.80 0.86
7657 8164 7.450014 TCCCTTTTGCTCTGTATTTAACATTGA 59.550 33.333 0.00 0.00 37.50 2.57
7723 8231 5.886474 TCCTTAGGTGACATACTACAGTCAG 59.114 44.000 0.00 0.00 44.62 3.51
7904 8415 3.126001 TGGCGTCTCAGTTTCAATCTT 57.874 42.857 0.00 0.00 0.00 2.40
8062 8573 4.828387 ACCGAGAGAAGTTTACTCAGAAGT 59.172 41.667 0.00 0.00 39.66 3.01
8068 8579 8.644374 AGAGAAGTTTACTCAGAAGTGATACT 57.356 34.615 0.00 0.00 36.92 2.12
8186 8697 4.617253 AAAAGGGAGCATAAAAACACCC 57.383 40.909 0.00 0.00 36.99 4.61
8539 9070 3.750371 TGTTTCGGTGACAATTCTCCAT 58.250 40.909 0.00 0.00 35.42 3.41
8578 9109 0.539438 TAAAGCCAACCTGCCACCTG 60.539 55.000 0.00 0.00 0.00 4.00
8727 9352 7.094805 GCTAGACTGGATGACATTTGTTAAACA 60.095 37.037 0.00 0.00 0.00 2.83
8765 9390 7.254286 CGACCAAAAGGGACAAAATTTAACAAG 60.254 37.037 0.00 0.00 41.15 3.16
8862 9511 4.141390 ACAAAGTTTCACATGGAGGTCTCT 60.141 41.667 0.00 0.00 0.00 3.10
8872 9521 3.343788 GAGGTCTCTGCGGTGGTCG 62.344 68.421 0.00 0.00 42.76 4.79
8882 9550 3.948719 GGTGGTCGGGCCTCAACA 61.949 66.667 0.84 0.00 38.35 3.33
8904 9572 1.004891 GGGGGTTCCTCCAGGATCT 59.995 63.158 2.39 0.00 44.98 2.75
8905 9573 0.267960 GGGGGTTCCTCCAGGATCTA 59.732 60.000 2.39 0.00 44.98 1.98
8906 9574 1.723288 GGGGTTCCTCCAGGATCTAG 58.277 60.000 0.00 0.00 44.98 2.43
8907 9575 1.723288 GGGTTCCTCCAGGATCTAGG 58.277 60.000 0.00 0.00 44.98 3.02
8908 9576 1.220750 GGGTTCCTCCAGGATCTAGGA 59.779 57.143 0.00 6.52 44.98 2.94
8909 9577 2.158081 GGGTTCCTCCAGGATCTAGGAT 60.158 54.545 7.06 0.00 44.98 3.24
8910 9578 2.903135 GGTTCCTCCAGGATCTAGGATG 59.097 54.545 7.06 5.37 44.98 3.51
8911 9579 2.903135 GTTCCTCCAGGATCTAGGATGG 59.097 54.545 7.06 10.05 44.98 3.51
8912 9580 2.156425 TCCTCCAGGATCTAGGATGGT 58.844 52.381 7.06 0.00 39.78 3.55
8913 9581 2.158249 TCCTCCAGGATCTAGGATGGTG 60.158 54.545 7.06 3.07 39.78 4.17
8914 9582 1.622811 CTCCAGGATCTAGGATGGTGC 59.377 57.143 7.06 0.00 34.32 5.01
8915 9583 0.319728 CCAGGATCTAGGATGGTGCG 59.680 60.000 0.00 0.00 0.00 5.34
8916 9584 1.332195 CAGGATCTAGGATGGTGCGA 58.668 55.000 0.00 0.00 0.00 5.10
8917 9585 1.000283 CAGGATCTAGGATGGTGCGAC 60.000 57.143 0.00 0.00 0.00 5.19
8918 9586 0.039074 GGATCTAGGATGGTGCGACG 60.039 60.000 0.00 0.00 0.00 5.12
8919 9587 0.669077 GATCTAGGATGGTGCGACGT 59.331 55.000 0.00 0.00 0.00 4.34
8920 9588 0.669077 ATCTAGGATGGTGCGACGTC 59.331 55.000 5.18 5.18 0.00 4.34
8921 9589 1.065928 CTAGGATGGTGCGACGTCC 59.934 63.158 10.58 9.96 45.10 4.79
8922 9590 1.663379 CTAGGATGGTGCGACGTCCA 61.663 60.000 17.80 14.15 46.77 4.02
8923 9591 1.252215 TAGGATGGTGCGACGTCCAA 61.252 55.000 17.80 0.00 46.77 3.53
8924 9592 2.388232 GGATGGTGCGACGTCCAAC 61.388 63.158 10.58 12.19 44.33 3.77
8925 9593 2.358247 ATGGTGCGACGTCCAACC 60.358 61.111 21.78 21.78 37.27 3.77
8926 9594 4.953868 TGGTGCGACGTCCAACCG 62.954 66.667 22.56 9.10 0.00 4.44
8930 9598 4.424566 GCGACGTCCAACCGCCTA 62.425 66.667 10.58 0.00 42.77 3.93
8931 9599 2.259204 CGACGTCCAACCGCCTAA 59.741 61.111 10.58 0.00 0.00 2.69
8932 9600 1.373246 CGACGTCCAACCGCCTAAA 60.373 57.895 10.58 0.00 0.00 1.85
8933 9601 0.945265 CGACGTCCAACCGCCTAAAA 60.945 55.000 10.58 0.00 0.00 1.52
8969 9637 3.767630 AACCGCCTGAACAACGCCT 62.768 57.895 0.00 0.00 0.00 5.52
9002 9670 2.740826 GCCGTTCAAGGTGCGCTA 60.741 61.111 9.73 0.00 0.00 4.26
9016 9684 2.187163 GCTACCTCGAAGGGTGCC 59.813 66.667 6.61 0.00 40.58 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.757699 GGGACTTACTGGCTAGGTCAG 59.242 57.143 0.85 0.00 41.54 3.51
8 9 1.621622 GGGGACTTACTGGCTAGGTCA 60.622 57.143 0.85 0.00 33.90 4.02
9 10 1.121378 GGGGACTTACTGGCTAGGTC 58.879 60.000 0.85 0.00 31.89 3.85
10 11 0.686769 CGGGGACTTACTGGCTAGGT 60.687 60.000 0.85 0.00 0.00 3.08
11 12 2.029307 GCGGGGACTTACTGGCTAGG 62.029 65.000 0.85 0.00 0.00 3.02
12 13 1.442148 GCGGGGACTTACTGGCTAG 59.558 63.158 0.00 0.00 0.00 3.42
13 14 2.062177 GGCGGGGACTTACTGGCTA 61.062 63.158 0.00 0.00 36.88 3.93
14 15 3.400054 GGCGGGGACTTACTGGCT 61.400 66.667 0.00 0.00 36.88 4.75
15 16 4.832608 CGGCGGGGACTTACTGGC 62.833 72.222 0.00 0.00 36.51 4.85
16 17 4.832608 GCGGCGGGGACTTACTGG 62.833 72.222 9.78 0.00 0.00 4.00
17 18 4.832608 GGCGGCGGGGACTTACTG 62.833 72.222 9.78 0.00 0.00 2.74
19 20 3.617143 AAAGGCGGCGGGGACTTAC 62.617 63.158 9.78 0.00 32.97 2.34
20 21 3.324108 AAAGGCGGCGGGGACTTA 61.324 61.111 9.78 0.00 32.97 2.24
30 31 2.361610 ATCCAGTGGCAAAGGCGG 60.362 61.111 3.51 0.00 42.47 6.13
31 32 1.651240 CTGATCCAGTGGCAAAGGCG 61.651 60.000 3.51 0.00 42.47 5.52
32 33 1.318158 CCTGATCCAGTGGCAAAGGC 61.318 60.000 3.51 0.00 40.13 4.35
33 34 0.329261 TCCTGATCCAGTGGCAAAGG 59.671 55.000 3.51 10.66 0.00 3.11
34 35 2.205022 TTCCTGATCCAGTGGCAAAG 57.795 50.000 3.51 0.95 0.00 2.77
35 36 2.726821 GATTCCTGATCCAGTGGCAAA 58.273 47.619 3.51 0.00 0.00 3.68
36 37 1.407299 CGATTCCTGATCCAGTGGCAA 60.407 52.381 3.51 0.00 0.00 4.52
37 38 0.178767 CGATTCCTGATCCAGTGGCA 59.821 55.000 3.51 0.00 0.00 4.92
38 39 0.179000 ACGATTCCTGATCCAGTGGC 59.821 55.000 3.51 0.00 0.00 5.01
39 40 2.036475 CCTACGATTCCTGATCCAGTGG 59.964 54.545 1.40 1.40 0.00 4.00
40 41 2.546795 GCCTACGATTCCTGATCCAGTG 60.547 54.545 0.00 0.00 0.00 3.66
41 42 1.689273 GCCTACGATTCCTGATCCAGT 59.311 52.381 0.00 0.00 0.00 4.00
42 43 1.967066 AGCCTACGATTCCTGATCCAG 59.033 52.381 0.00 0.00 0.00 3.86
43 44 1.688735 CAGCCTACGATTCCTGATCCA 59.311 52.381 0.00 0.00 0.00 3.41
44 45 1.964223 TCAGCCTACGATTCCTGATCC 59.036 52.381 0.00 0.00 30.00 3.36
45 46 2.887783 TCTCAGCCTACGATTCCTGATC 59.112 50.000 0.00 0.00 34.20 2.92
46 47 2.950781 TCTCAGCCTACGATTCCTGAT 58.049 47.619 0.00 0.00 34.20 2.90
47 48 2.437085 TCTCAGCCTACGATTCCTGA 57.563 50.000 0.00 0.00 33.65 3.86
48 49 3.648009 GAATCTCAGCCTACGATTCCTG 58.352 50.000 0.00 0.00 37.91 3.86
49 50 2.294791 CGAATCTCAGCCTACGATTCCT 59.705 50.000 8.64 0.00 39.71 3.36
50 51 2.034812 ACGAATCTCAGCCTACGATTCC 59.965 50.000 8.64 0.00 39.71 3.01
51 52 3.243101 TGACGAATCTCAGCCTACGATTC 60.243 47.826 0.00 0.00 39.56 2.52
52 53 2.688446 TGACGAATCTCAGCCTACGATT 59.312 45.455 0.00 0.00 0.00 3.34
53 54 2.298610 TGACGAATCTCAGCCTACGAT 58.701 47.619 0.00 0.00 0.00 3.73
54 55 1.746470 TGACGAATCTCAGCCTACGA 58.254 50.000 0.00 0.00 0.00 3.43
55 56 2.561733 TTGACGAATCTCAGCCTACG 57.438 50.000 0.00 0.00 0.00 3.51
56 57 2.930682 GGTTTGACGAATCTCAGCCTAC 59.069 50.000 0.00 0.00 0.00 3.18
57 58 2.565391 TGGTTTGACGAATCTCAGCCTA 59.435 45.455 0.00 0.00 0.00 3.93
58 59 1.347707 TGGTTTGACGAATCTCAGCCT 59.652 47.619 0.00 0.00 0.00 4.58
59 60 1.464997 GTGGTTTGACGAATCTCAGCC 59.535 52.381 0.00 0.00 0.00 4.85
60 61 2.158449 CAGTGGTTTGACGAATCTCAGC 59.842 50.000 0.00 0.00 0.00 4.26
61 62 3.393800 ACAGTGGTTTGACGAATCTCAG 58.606 45.455 0.00 0.00 0.00 3.35
62 63 3.469008 ACAGTGGTTTGACGAATCTCA 57.531 42.857 0.00 0.00 0.00 3.27
63 64 3.186613 GGAACAGTGGTTTGACGAATCTC 59.813 47.826 0.00 0.00 37.36 2.75
64 65 3.139077 GGAACAGTGGTTTGACGAATCT 58.861 45.455 0.00 0.00 37.36 2.40
65 66 2.225727 GGGAACAGTGGTTTGACGAATC 59.774 50.000 0.00 0.00 37.36 2.52
66 67 2.227194 GGGAACAGTGGTTTGACGAAT 58.773 47.619 0.00 0.00 37.36 3.34
67 68 1.670791 GGGAACAGTGGTTTGACGAA 58.329 50.000 0.00 0.00 37.36 3.85
68 69 0.531090 CGGGAACAGTGGTTTGACGA 60.531 55.000 0.00 0.00 37.36 4.20
69 70 0.812412 ACGGGAACAGTGGTTTGACG 60.812 55.000 0.00 0.00 37.36 4.35
70 71 2.243602 TACGGGAACAGTGGTTTGAC 57.756 50.000 0.00 0.00 37.36 3.18
71 72 3.579586 AGTATACGGGAACAGTGGTTTGA 59.420 43.478 0.00 0.00 37.36 2.69
72 73 3.682858 CAGTATACGGGAACAGTGGTTTG 59.317 47.826 0.00 0.00 37.36 2.93
73 74 3.325716 ACAGTATACGGGAACAGTGGTTT 59.674 43.478 7.93 0.00 37.36 3.27
74 75 2.901839 ACAGTATACGGGAACAGTGGTT 59.098 45.455 7.93 0.00 40.76 3.67
75 76 2.532843 ACAGTATACGGGAACAGTGGT 58.467 47.619 7.93 0.00 0.00 4.16
76 77 3.056393 TGAACAGTATACGGGAACAGTGG 60.056 47.826 7.93 0.00 0.00 4.00
77 78 3.924686 GTGAACAGTATACGGGAACAGTG 59.075 47.826 7.93 0.00 0.00 3.66
78 79 3.575256 TGTGAACAGTATACGGGAACAGT 59.425 43.478 7.93 0.00 0.00 3.55
79 80 4.082408 TCTGTGAACAGTATACGGGAACAG 60.082 45.833 19.40 19.40 44.12 3.16
80 81 3.827876 TCTGTGAACAGTATACGGGAACA 59.172 43.478 10.14 7.50 44.12 3.18
81 82 4.445452 TCTGTGAACAGTATACGGGAAC 57.555 45.455 10.14 3.59 44.12 3.62
82 83 5.471556 TTTCTGTGAACAGTATACGGGAA 57.528 39.130 10.14 0.00 44.12 3.97
83 84 5.186215 TGATTTCTGTGAACAGTATACGGGA 59.814 40.000 10.14 0.00 44.12 5.14
84 85 5.291128 GTGATTTCTGTGAACAGTATACGGG 59.709 44.000 10.14 2.29 44.12 5.28
85 86 6.035005 CAGTGATTTCTGTGAACAGTATACGG 59.965 42.308 10.14 1.08 44.12 4.02
86 87 6.586463 ACAGTGATTTCTGTGAACAGTATACG 59.414 38.462 10.14 0.00 45.40 3.06
87 88 7.891183 ACAGTGATTTCTGTGAACAGTATAC 57.109 36.000 10.14 0.00 45.40 1.47
88 89 9.990360 TTAACAGTGATTTCTGTGAACAGTATA 57.010 29.630 10.14 0.00 46.25 1.47
89 90 8.902540 TTAACAGTGATTTCTGTGAACAGTAT 57.097 30.769 10.14 5.64 46.25 2.12
90 91 7.042051 GCTTAACAGTGATTTCTGTGAACAGTA 60.042 37.037 10.14 0.00 46.25 2.74
99 100 6.245115 TGATGTGCTTAACAGTGATTTCTG 57.755 37.500 0.00 0.00 43.64 3.02
102 103 6.985117 ACATTGATGTGCTTAACAGTGATTT 58.015 32.000 0.00 0.00 43.64 2.17
133 134 1.262417 TCAGACCGGATGCAACAGTA 58.738 50.000 9.46 0.00 0.00 2.74
147 148 1.206831 GAAAAGCGGCGGTTCAGAC 59.793 57.895 25.46 12.35 0.00 3.51
151 152 0.456142 GGATTGAAAAGCGGCGGTTC 60.456 55.000 25.46 14.26 28.98 3.62
165 166 2.341257 CCAGTCTCGTCTGTTGGATTG 58.659 52.381 0.00 0.00 34.02 2.67
174 175 1.247419 CCAGTCAGCCAGTCTCGTCT 61.247 60.000 0.00 0.00 0.00 4.18
183 184 0.991146 TATCTTTGCCCAGTCAGCCA 59.009 50.000 0.00 0.00 0.00 4.75
184 185 1.673168 CTATCTTTGCCCAGTCAGCC 58.327 55.000 0.00 0.00 0.00 4.85
185 186 1.020437 GCTATCTTTGCCCAGTCAGC 58.980 55.000 0.00 0.00 0.00 4.26
186 187 1.293924 CGCTATCTTTGCCCAGTCAG 58.706 55.000 0.00 0.00 0.00 3.51
187 188 0.107703 CCGCTATCTTTGCCCAGTCA 60.108 55.000 0.00 0.00 0.00 3.41
188 189 0.107654 ACCGCTATCTTTGCCCAGTC 60.108 55.000 0.00 0.00 0.00 3.51
189 190 1.134491 GTACCGCTATCTTTGCCCAGT 60.134 52.381 0.00 0.00 0.00 4.00
190 191 1.139058 AGTACCGCTATCTTTGCCCAG 59.861 52.381 0.00 0.00 0.00 4.45
191 192 1.134521 CAGTACCGCTATCTTTGCCCA 60.135 52.381 0.00 0.00 0.00 5.36
192 193 1.134491 ACAGTACCGCTATCTTTGCCC 60.134 52.381 0.00 0.00 0.00 5.36
200 201 3.505480 AGGTAGCTACAGTACCGCTAT 57.495 47.619 24.75 0.00 44.21 2.97
239 245 5.233476 GGTTGCGTGTATTCGATTCAGATTA 59.767 40.000 0.00 0.00 0.00 1.75
280 288 2.724690 CGGAATTAGCGGACGAGTAATG 59.275 50.000 0.00 0.00 0.00 1.90
281 289 2.360165 ACGGAATTAGCGGACGAGTAAT 59.640 45.455 0.00 0.00 0.00 1.89
282 290 1.745087 ACGGAATTAGCGGACGAGTAA 59.255 47.619 0.00 0.00 0.00 2.24
283 291 1.331756 GACGGAATTAGCGGACGAGTA 59.668 52.381 0.00 0.00 0.00 2.59
284 292 0.100146 GACGGAATTAGCGGACGAGT 59.900 55.000 0.00 0.00 0.00 4.18
285 293 0.381089 AGACGGAATTAGCGGACGAG 59.619 55.000 0.00 0.00 0.00 4.18
286 294 0.099968 CAGACGGAATTAGCGGACGA 59.900 55.000 0.00 0.00 0.00 4.20
287 295 0.179145 ACAGACGGAATTAGCGGACG 60.179 55.000 0.00 0.00 0.00 4.79
288 296 2.005971 AACAGACGGAATTAGCGGAC 57.994 50.000 0.00 0.00 0.00 4.79
463 471 3.936566 ACCTCGGGGGAGTGGGAA 61.937 66.667 6.13 0.00 38.76 3.97
644 652 0.478072 AGCCAAGTCCATTCACACCA 59.522 50.000 0.00 0.00 0.00 4.17
735 743 1.274475 CCTACCCTTCCCTTCCCTTCT 60.274 57.143 0.00 0.00 0.00 2.85
736 744 1.214217 CCTACCCTTCCCTTCCCTTC 58.786 60.000 0.00 0.00 0.00 3.46
737 745 0.253677 CCCTACCCTTCCCTTCCCTT 60.254 60.000 0.00 0.00 0.00 3.95
738 746 1.166973 TCCCTACCCTTCCCTTCCCT 61.167 60.000 0.00 0.00 0.00 4.20
739 747 0.253488 TTCCCTACCCTTCCCTTCCC 60.253 60.000 0.00 0.00 0.00 3.97
784 792 3.844090 GGACGAGGAGGAGGCAGC 61.844 72.222 0.00 0.00 0.00 5.25
786 794 2.043852 GAGGACGAGGAGGAGGCA 60.044 66.667 0.00 0.00 0.00 4.75
863 871 4.545706 GGCATGGGTCGATCGGCA 62.546 66.667 22.85 1.34 0.00 5.69
913 921 3.911698 CGGCGGGGATGACGATGA 61.912 66.667 0.00 0.00 45.34 2.92
983 992 0.829333 CATCCTCCACACCTCCTCTG 59.171 60.000 0.00 0.00 0.00 3.35
1139 1148 2.280389 CGTCCATGATGGGGCTCG 60.280 66.667 12.26 8.05 38.32 5.03
1350 1359 4.285292 CAAAAGCAATATCATCAGACGGC 58.715 43.478 0.00 0.00 0.00 5.68
1830 1839 0.461961 GAGACGGGATCCAACTCCTG 59.538 60.000 15.23 0.00 45.70 3.86
2518 2531 8.986477 AAGCAAATTAAGGTGACATAACAATC 57.014 30.769 0.00 0.00 0.00 2.67
2547 2560 2.421424 GGTGCCATCTCTGCTGTTTAAG 59.579 50.000 0.00 0.00 0.00 1.85
2622 2635 4.020617 TTGGTGGAGGAGGCGCAG 62.021 66.667 10.83 0.00 0.00 5.18
2730 2743 9.135843 GGTGGCAAACTGTTTTTCTATAAATAC 57.864 33.333 2.41 0.00 0.00 1.89
2743 2756 1.392589 CTCAGTGGTGGCAAACTGTT 58.607 50.000 23.41 0.00 43.49 3.16
2798 2819 4.297510 TGTCCTTGCACAAATTTTCATCG 58.702 39.130 0.00 0.00 0.00 3.84
2919 2940 8.642432 AGAAAGAACTGGGGATTTTTCTAAAAG 58.358 33.333 0.00 0.00 34.24 2.27
2976 2997 9.653287 CATTACTAGACTATTGACAAGTTTCCA 57.347 33.333 0.00 0.00 0.00 3.53
2984 3005 8.362464 ACCAGAACATTACTAGACTATTGACA 57.638 34.615 0.00 0.00 0.00 3.58
2985 3006 8.467598 TGACCAGAACATTACTAGACTATTGAC 58.532 37.037 0.00 0.00 0.00 3.18
3159 3181 9.342308 CATAACTATACATCCAATGTCCAACTT 57.658 33.333 0.00 0.00 43.67 2.66
3191 3213 9.700831 AAAGCTCTTTACCCAAGTTATATCAAT 57.299 29.630 0.00 0.00 33.66 2.57
3242 3264 1.339438 ACTGTAGCTTCATGTGGCAGG 60.339 52.381 13.18 4.89 0.00 4.85
3278 3300 9.905713 ATTTATCTAGTTTAAGATGTGCAGGAA 57.094 29.630 0.00 0.00 36.85 3.36
3353 3375 4.089408 TGTAACCCAAGAACTTACACCC 57.911 45.455 0.00 0.00 0.00 4.61
3433 3455 6.767902 ACAGAATACAAGTTCTCAGCTTTCAA 59.232 34.615 0.00 0.00 36.33 2.69
3463 3500 4.632251 GCCAATGCAATCATGAACATCAAA 59.368 37.500 0.00 0.00 37.47 2.69
3476 3514 3.977134 TTTGTGTATGGCCAATGCAAT 57.023 38.095 10.96 0.00 40.13 3.56
3510 3548 9.709600 GCTCTTTATTTGATGTTACTTAGAAGC 57.290 33.333 0.00 0.00 0.00 3.86
3557 3595 4.884668 TGGGTAGAGTTCGAAAGTTCAT 57.115 40.909 0.00 0.00 0.00 2.57
3560 3598 4.884668 TCATGGGTAGAGTTCGAAAGTT 57.115 40.909 0.00 0.00 0.00 2.66
3578 3616 7.224753 CAGTGCACCGAATTAACTAACTATCAT 59.775 37.037 14.63 0.00 0.00 2.45
3602 3640 3.786809 CAAGCATTGGAGCACACAG 57.213 52.632 0.00 0.00 43.94 3.66
3724 3762 4.180057 GGAGCTCAGATAACAGAACACAG 58.820 47.826 17.19 0.00 0.00 3.66
3787 3825 8.999220 TGTTATGATTTCATTTGCAAGCAATA 57.001 26.923 8.46 0.67 37.76 1.90
3848 3886 3.557577 TTCATGTTCAAGTTGCATCCG 57.442 42.857 0.00 0.00 0.00 4.18
3873 3911 9.803315 AATTTCTTTAGTTTGAAGGAACAAGTC 57.197 29.630 0.00 0.00 31.94 3.01
3922 3960 8.746052 TTTCCATTCTCTTGAAACTCTAACAA 57.254 30.769 0.00 0.00 35.63 2.83
3923 3961 8.924511 ATTTCCATTCTCTTGAAACTCTAACA 57.075 30.769 0.00 0.00 35.63 2.41
3927 3965 9.972106 ATTCTATTTCCATTCTCTTGAAACTCT 57.028 29.630 0.00 0.00 35.63 3.24
3929 3967 9.972106 AGATTCTATTTCCATTCTCTTGAAACT 57.028 29.630 0.00 0.00 35.63 2.66
3932 3970 9.964354 TCAAGATTCTATTTCCATTCTCTTGAA 57.036 29.630 8.70 0.00 42.39 2.69
3951 3989 9.732130 GGATACAGGAATTAGCTTATCAAGATT 57.268 33.333 0.00 0.00 0.00 2.40
3952 3990 8.884323 TGGATACAGGAATTAGCTTATCAAGAT 58.116 33.333 0.00 0.00 46.17 2.40
3953 3991 8.262601 TGGATACAGGAATTAGCTTATCAAGA 57.737 34.615 0.00 0.00 46.17 3.02
3972 4010 8.556194 TCGAACATTAGCATTTGTAATGGATAC 58.444 33.333 7.36 0.00 40.69 2.24
3973 4011 8.669946 TCGAACATTAGCATTTGTAATGGATA 57.330 30.769 7.36 0.00 40.69 2.59
3974 4012 7.283127 ACTCGAACATTAGCATTTGTAATGGAT 59.717 33.333 7.36 0.00 40.69 3.41
3975 4013 6.597672 ACTCGAACATTAGCATTTGTAATGGA 59.402 34.615 7.36 0.00 40.69 3.41
3976 4014 6.785191 ACTCGAACATTAGCATTTGTAATGG 58.215 36.000 7.36 0.00 40.69 3.16
3977 4015 9.425893 CTTACTCGAACATTAGCATTTGTAATG 57.574 33.333 2.10 2.10 41.68 1.90
3978 4016 9.378551 TCTTACTCGAACATTAGCATTTGTAAT 57.621 29.630 0.00 0.00 0.00 1.89
3979 4017 8.653338 GTCTTACTCGAACATTAGCATTTGTAA 58.347 33.333 0.00 0.00 0.00 2.41
3980 4018 7.815549 TGTCTTACTCGAACATTAGCATTTGTA 59.184 33.333 0.00 0.00 0.00 2.41
3981 4019 6.649141 TGTCTTACTCGAACATTAGCATTTGT 59.351 34.615 0.00 0.00 0.00 2.83
3982 4020 7.060600 TGTCTTACTCGAACATTAGCATTTG 57.939 36.000 0.00 0.00 0.00 2.32
3983 4021 7.387948 AGTTGTCTTACTCGAACATTAGCATTT 59.612 33.333 0.00 0.00 0.00 2.32
3984 4022 6.874134 AGTTGTCTTACTCGAACATTAGCATT 59.126 34.615 0.00 0.00 0.00 3.56
3985 4023 6.398918 AGTTGTCTTACTCGAACATTAGCAT 58.601 36.000 0.00 0.00 0.00 3.79
3986 4024 5.779922 AGTTGTCTTACTCGAACATTAGCA 58.220 37.500 0.00 0.00 0.00 3.49
3987 4025 6.805271 TGTAGTTGTCTTACTCGAACATTAGC 59.195 38.462 0.00 0.00 0.00 3.09
3988 4026 8.912787 ATGTAGTTGTCTTACTCGAACATTAG 57.087 34.615 0.00 0.00 26.21 1.73
3989 4027 9.999009 CTATGTAGTTGTCTTACTCGAACATTA 57.001 33.333 0.00 0.00 31.07 1.90
3990 4028 8.521176 ACTATGTAGTTGTCTTACTCGAACATT 58.479 33.333 0.00 0.00 31.07 2.71
3991 4029 8.053026 ACTATGTAGTTGTCTTACTCGAACAT 57.947 34.615 0.00 0.00 32.48 2.71
3992 4030 7.444629 ACTATGTAGTTGTCTTACTCGAACA 57.555 36.000 0.00 0.00 31.13 3.18
3993 4031 8.877779 TCTACTATGTAGTTGTCTTACTCGAAC 58.122 37.037 0.00 0.00 37.73 3.95
3994 4032 9.440773 TTCTACTATGTAGTTGTCTTACTCGAA 57.559 33.333 0.00 0.00 37.73 3.71
3995 4033 9.440773 TTTCTACTATGTAGTTGTCTTACTCGA 57.559 33.333 0.00 0.00 37.73 4.04
4024 4062 9.955102 CTCTATTCCAATCATCATTATCCAGAA 57.045 33.333 0.00 0.00 0.00 3.02
4025 4063 9.330220 TCTCTATTCCAATCATCATTATCCAGA 57.670 33.333 0.00 0.00 0.00 3.86
4026 4064 9.955102 TTCTCTATTCCAATCATCATTATCCAG 57.045 33.333 0.00 0.00 0.00 3.86
4047 4085 8.523658 GGGCTACTTCAATGTTTTATTTTCTCT 58.476 33.333 0.00 0.00 0.00 3.10
4048 4086 8.303876 TGGGCTACTTCAATGTTTTATTTTCTC 58.696 33.333 0.00 0.00 0.00 2.87
4049 4087 8.189119 TGGGCTACTTCAATGTTTTATTTTCT 57.811 30.769 0.00 0.00 0.00 2.52
4052 4090 9.255029 ACTATGGGCTACTTCAATGTTTTATTT 57.745 29.630 0.00 0.00 0.00 1.40
4053 4091 8.823220 ACTATGGGCTACTTCAATGTTTTATT 57.177 30.769 0.00 0.00 0.00 1.40
4054 4092 8.686334 CAACTATGGGCTACTTCAATGTTTTAT 58.314 33.333 0.00 0.00 0.00 1.40
4055 4093 7.668052 ACAACTATGGGCTACTTCAATGTTTTA 59.332 33.333 0.00 0.00 0.00 1.52
4056 4094 6.493458 ACAACTATGGGCTACTTCAATGTTTT 59.507 34.615 0.00 0.00 0.00 2.43
4057 4095 6.010219 ACAACTATGGGCTACTTCAATGTTT 58.990 36.000 0.00 0.00 0.00 2.83
4058 4096 5.570320 ACAACTATGGGCTACTTCAATGTT 58.430 37.500 0.00 0.00 0.00 2.71
4059 4097 5.179452 ACAACTATGGGCTACTTCAATGT 57.821 39.130 0.00 0.00 0.00 2.71
4060 4098 5.882557 AGAACAACTATGGGCTACTTCAATG 59.117 40.000 0.00 0.00 0.00 2.82
4061 4099 5.882557 CAGAACAACTATGGGCTACTTCAAT 59.117 40.000 0.00 0.00 0.00 2.57
4062 4100 5.221843 ACAGAACAACTATGGGCTACTTCAA 60.222 40.000 0.00 0.00 0.00 2.69
4063 4101 4.286032 ACAGAACAACTATGGGCTACTTCA 59.714 41.667 0.00 0.00 0.00 3.02
4064 4102 4.833390 ACAGAACAACTATGGGCTACTTC 58.167 43.478 0.00 0.00 0.00 3.01
4065 4103 4.910458 ACAGAACAACTATGGGCTACTT 57.090 40.909 0.00 0.00 0.00 2.24
4066 4104 5.024118 ACTACAGAACAACTATGGGCTACT 58.976 41.667 0.00 0.00 0.00 2.57
4067 4105 5.340439 ACTACAGAACAACTATGGGCTAC 57.660 43.478 0.00 0.00 0.00 3.58
4140 4178 5.875910 CCGTCCAATACAAACCACTACATAA 59.124 40.000 0.00 0.00 0.00 1.90
4143 4181 3.324268 TCCGTCCAATACAAACCACTACA 59.676 43.478 0.00 0.00 0.00 2.74
4169 4207 1.542030 GATGTCCAGAGTGTCGTGTCT 59.458 52.381 0.00 0.00 0.00 3.41
4174 4212 2.603412 GCTATCGATGTCCAGAGTGTCG 60.603 54.545 8.54 0.00 0.00 4.35
4178 4216 2.760650 TGTTGCTATCGATGTCCAGAGT 59.239 45.455 8.54 0.00 0.00 3.24
4249 4287 7.840342 ATGCAAGTTACACATTTTTGTTTCA 57.160 28.000 0.00 0.00 0.00 2.69
4279 4317 2.435586 CTCCTGCTGGTTGCTCGG 60.436 66.667 9.73 0.00 43.37 4.63
4307 4345 2.563179 CACTAGTGGCAGTCCTTAGTGT 59.437 50.000 15.49 0.00 41.28 3.55
4325 4363 9.614792 GTACTTCCTAAATTCATGTTATCCACT 57.385 33.333 0.00 0.00 0.00 4.00
4495 4534 9.025041 AGGGAGTATTATTTTCCAACTCAAAAG 57.975 33.333 0.00 0.00 38.63 2.27
4566 4605 1.069978 TCACTCATTTCAGTCCGCACA 59.930 47.619 0.00 0.00 0.00 4.57
4567 4606 1.795768 TCACTCATTTCAGTCCGCAC 58.204 50.000 0.00 0.00 0.00 5.34
4569 4608 3.896648 TTTTCACTCATTTCAGTCCGC 57.103 42.857 0.00 0.00 0.00 5.54
4614 4654 6.986817 CGTCCTGAATTATAAGATGTTCCACT 59.013 38.462 0.00 0.00 0.00 4.00
4615 4655 6.202954 CCGTCCTGAATTATAAGATGTTCCAC 59.797 42.308 0.00 0.00 0.00 4.02
4634 4674 3.967467 TTTAGATACTCCCTCCGTCCT 57.033 47.619 0.00 0.00 0.00 3.85
4718 4758 6.373216 TGACCACCAGTTTGTAAATAGTATGC 59.627 38.462 0.00 0.00 0.00 3.14
4732 4772 2.433970 CCCAAAAACATGACCACCAGTT 59.566 45.455 0.00 0.00 0.00 3.16
4765 4816 4.152580 GTCCTTTGAGAGACGGTGAATTTC 59.847 45.833 0.00 0.00 0.00 2.17
4906 4958 8.476447 CAGATCATACATATTCATAGCAGACCT 58.524 37.037 0.00 0.00 0.00 3.85
5045 5098 0.036732 GATGGCTTGTGGAGTGGTGA 59.963 55.000 0.00 0.00 0.00 4.02
5139 5192 4.634199 CCCAAAACAGAACTTCATTGCAT 58.366 39.130 0.00 0.00 0.00 3.96
5146 5199 4.058124 GGAATTGCCCAAAACAGAACTTC 58.942 43.478 0.00 0.00 0.00 3.01
5248 5302 2.095567 CGACATTCTTCCAAGCCTTGTG 60.096 50.000 3.37 0.00 0.00 3.33
5249 5303 2.154462 CGACATTCTTCCAAGCCTTGT 58.846 47.619 3.37 0.00 0.00 3.16
5400 5455 6.692486 TGAGCAAGACCAAAACTGTTAAAAA 58.308 32.000 0.00 0.00 0.00 1.94
5451 5507 1.147473 GTCCAAAATGGCGGCTTTTG 58.853 50.000 25.52 25.52 41.23 2.44
5458 5514 2.937469 TGCTAATGTCCAAAATGGCG 57.063 45.000 0.00 0.00 37.47 5.69
5462 5518 9.729281 AGATTTGAAATTGCTAATGTCCAAAAT 57.271 25.926 0.00 0.00 0.00 1.82
5647 5703 4.413760 TCCCTCCGATACCCTAATAGTTG 58.586 47.826 0.00 0.00 0.00 3.16
5648 5704 4.675038 CTCCCTCCGATACCCTAATAGTT 58.325 47.826 0.00 0.00 0.00 2.24
5650 5706 3.025262 GCTCCCTCCGATACCCTAATAG 58.975 54.545 0.00 0.00 0.00 1.73
5737 5793 4.854399 TCATGCGACTTTAAGTTTGTTGG 58.146 39.130 0.00 0.00 0.00 3.77
5980 6089 1.774856 ACCTTATGGGCCATACCACTC 59.225 52.381 25.60 0.00 44.72 3.51
5999 6108 4.045636 ACAAGAACATTCACTTGGCAAC 57.954 40.909 0.00 0.00 45.03 4.17
6084 6193 6.201234 GGATCTCTAGTTTCCTAACAAATCGC 59.799 42.308 0.00 0.00 36.70 4.58
6184 6398 3.717507 TGGGGACAGGGAATATGACTA 57.282 47.619 0.00 0.00 35.01 2.59
6188 6402 3.669939 AGTTTGGGGACAGGGAATATG 57.330 47.619 0.00 0.00 44.54 1.78
6192 6406 2.246327 AGAAAAGTTTGGGGACAGGGAA 59.754 45.455 0.00 0.00 44.54 3.97
6206 6420 1.208293 GCGGATGAGAGGGAGAAAAGT 59.792 52.381 0.00 0.00 0.00 2.66
6260 6474 2.766828 AGGAGTGTAGCAATGAGGGTAC 59.233 50.000 0.00 0.00 41.05 3.34
6289 6503 5.013913 ACATGCTATGGCTGATAAGGATCTT 59.986 40.000 1.68 0.00 39.59 2.40
6305 6519 6.049149 GTGTATGGTAAGTGACACATGCTAT 58.951 40.000 8.59 5.71 41.46 2.97
6380 6594 4.647611 TCTCCAAATCTTTTAACGAGCCA 58.352 39.130 0.00 0.00 0.00 4.75
6394 6608 6.294731 CCCTTTCGAACTTGAAATCTCCAAAT 60.295 38.462 0.00 0.00 37.24 2.32
6441 6655 5.768317 TGGCAGCTACAAAACAAAATAGAC 58.232 37.500 0.00 0.00 0.00 2.59
6480 6694 0.106918 AGAACAAGGGCAAACCGTCA 60.107 50.000 0.00 0.00 46.96 4.35
6482 6696 1.134037 TGTAGAACAAGGGCAAACCGT 60.134 47.619 0.00 0.00 46.96 4.83
6990 7207 5.483811 TCCTACAAACGCATACATCTTCAA 58.516 37.500 0.00 0.00 0.00 2.69
7041 7258 5.277779 CCAAACTTAGCATCGTTGAGTTCAA 60.278 40.000 0.00 0.00 30.77 2.69
7052 7269 9.547753 TGAAGATTATAGACCAAACTTAGCATC 57.452 33.333 0.00 0.00 0.00 3.91
7115 7332 7.775093 CCATAATTGAAGGAGGAGATACAAACA 59.225 37.037 0.00 0.00 0.00 2.83
7273 7492 3.633986 GGCCATCAAGGAGGATAAACAAG 59.366 47.826 0.00 0.00 41.22 3.16
7274 7493 3.011144 TGGCCATCAAGGAGGATAAACAA 59.989 43.478 0.00 0.00 41.22 2.83
7275 7494 2.580322 TGGCCATCAAGGAGGATAAACA 59.420 45.455 0.00 0.00 41.22 2.83
7276 7495 3.297134 TGGCCATCAAGGAGGATAAAC 57.703 47.619 0.00 0.00 41.22 2.01
7277 7496 3.627237 GGTTGGCCATCAAGGAGGATAAA 60.627 47.826 6.09 0.00 41.22 1.40
7278 7497 2.091885 GGTTGGCCATCAAGGAGGATAA 60.092 50.000 6.09 0.00 41.22 1.75
7279 7498 1.494721 GGTTGGCCATCAAGGAGGATA 59.505 52.381 6.09 0.00 41.22 2.59
7280 7499 0.259938 GGTTGGCCATCAAGGAGGAT 59.740 55.000 6.09 0.00 41.22 3.24
7391 7897 6.706295 TGTGGTGTTCTATTCATGTGTGATA 58.294 36.000 0.00 0.00 33.56 2.15
7516 8023 3.641437 TTGTGACAATAAGCTGCCAAC 57.359 42.857 0.00 0.00 0.00 3.77
7531 8038 9.409312 CATTGCAAGTTTACATAAGAATTGTGA 57.591 29.630 4.94 0.00 39.84 3.58
7532 8039 9.409312 TCATTGCAAGTTTACATAAGAATTGTG 57.591 29.630 4.94 0.00 43.41 3.33
7595 8102 1.909532 CGTGTACGACTAAGGAAAGCG 59.090 52.381 0.00 0.00 43.02 4.68
7657 8164 5.888161 GGTCATATTCAGGGTTCTTTGTCAT 59.112 40.000 0.00 0.00 0.00 3.06
7723 8231 2.558359 CCTTTCAATGGGAACTGTGGTC 59.442 50.000 0.00 0.00 34.56 4.02
7904 8415 3.256704 AGTATGTCCCCTCAAGTCCAAA 58.743 45.455 0.00 0.00 0.00 3.28
8068 8579 6.922957 GGCATCTCTTTGTTGTGTATCAAAAA 59.077 34.615 0.00 0.00 37.81 1.94
8727 9352 8.215050 TGTCCCTTTTGGTCGTAATATATCAAT 58.785 33.333 0.00 0.00 38.10 2.57
8740 9365 7.011950 CCTTGTTAAATTTTGTCCCTTTTGGTC 59.988 37.037 0.00 0.00 38.10 4.02
8765 9390 9.528018 TTTTAGATTTCATTGTGAAGTGAAACC 57.472 29.630 3.00 0.00 44.36 3.27
8882 9550 3.330720 CTGGAGGAACCCCCGCTT 61.331 66.667 0.00 0.00 40.87 4.68
8904 9572 1.252215 TTGGACGTCGCACCATCCTA 61.252 55.000 9.92 0.00 36.02 2.94
8905 9573 2.579657 TTGGACGTCGCACCATCCT 61.580 57.895 9.92 0.00 36.02 3.24
8906 9574 2.047655 TTGGACGTCGCACCATCC 60.048 61.111 9.92 2.66 36.02 3.51
8907 9575 2.388232 GGTTGGACGTCGCACCATC 61.388 63.158 23.39 10.62 36.02 3.51
8908 9576 2.358247 GGTTGGACGTCGCACCAT 60.358 61.111 23.39 0.00 36.02 3.55
8909 9577 4.953868 CGGTTGGACGTCGCACCA 62.954 66.667 26.07 11.75 0.00 4.17
8913 9581 3.919973 TTAGGCGGTTGGACGTCGC 62.920 63.158 9.92 9.86 44.42 5.19
8914 9582 0.945265 TTTTAGGCGGTTGGACGTCG 60.945 55.000 9.92 0.00 44.42 5.12
8915 9583 1.196127 CTTTTTAGGCGGTTGGACGTC 59.804 52.381 7.13 7.13 39.08 4.34
8916 9584 1.232119 CTTTTTAGGCGGTTGGACGT 58.768 50.000 0.00 0.00 35.98 4.34
8917 9585 0.519961 CCTTTTTAGGCGGTTGGACG 59.480 55.000 0.00 0.00 0.00 4.79
8918 9586 1.900245 TCCTTTTTAGGCGGTTGGAC 58.100 50.000 0.00 0.00 0.00 4.02
8919 9587 2.442413 CATCCTTTTTAGGCGGTTGGA 58.558 47.619 0.00 0.00 0.00 3.53
8920 9588 1.476488 CCATCCTTTTTAGGCGGTTGG 59.524 52.381 0.00 0.00 32.92 3.77
8921 9589 2.094752 CACCATCCTTTTTAGGCGGTTG 60.095 50.000 0.00 0.00 33.86 3.77
8922 9590 2.167662 CACCATCCTTTTTAGGCGGTT 58.832 47.619 0.00 0.00 33.86 4.44
8923 9591 1.834188 CACCATCCTTTTTAGGCGGT 58.166 50.000 0.00 0.00 35.65 5.68
8924 9592 0.455815 GCACCATCCTTTTTAGGCGG 59.544 55.000 0.00 0.00 0.00 6.13
8925 9593 0.098728 CGCACCATCCTTTTTAGGCG 59.901 55.000 0.00 0.00 37.17 5.52
8926 9594 1.132453 GTCGCACCATCCTTTTTAGGC 59.868 52.381 0.00 0.00 0.00 3.93
8927 9595 1.396996 CGTCGCACCATCCTTTTTAGG 59.603 52.381 0.00 0.00 0.00 2.69
8928 9596 2.073816 ACGTCGCACCATCCTTTTTAG 58.926 47.619 0.00 0.00 0.00 1.85
8929 9597 2.070783 GACGTCGCACCATCCTTTTTA 58.929 47.619 0.00 0.00 0.00 1.52
8930 9598 0.872388 GACGTCGCACCATCCTTTTT 59.128 50.000 0.00 0.00 0.00 1.94
8931 9599 0.953960 GGACGTCGCACCATCCTTTT 60.954 55.000 9.92 0.00 0.00 2.27
8932 9600 1.375523 GGACGTCGCACCATCCTTT 60.376 57.895 9.92 0.00 0.00 3.11
8933 9601 2.107041 TTGGACGTCGCACCATCCTT 62.107 55.000 9.92 0.00 36.02 3.36
8979 9647 1.917782 GCACCTTGAACGGCGCAATA 61.918 55.000 10.83 0.00 32.45 1.90
9001 9669 1.987855 CCTGGCACCCTTCGAGGTA 60.988 63.158 0.00 0.00 38.39 3.08
9002 9670 3.322466 CCTGGCACCCTTCGAGGT 61.322 66.667 0.00 0.00 42.40 3.85
9016 9684 1.077501 ATTGACGATGGCCACCCTG 60.078 57.895 8.16 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.