Multiple sequence alignment - TraesCS4B01G270000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G270000 chr4B 100.000 4708 0 0 1 4708 545062943 545067650 0.000000e+00 8695
1 TraesCS4B01G270000 chr4B 97.329 2284 52 6 896 3179 545077155 545079429 0.000000e+00 3871
2 TraesCS4B01G270000 chr4B 97.843 1530 33 0 3179 4708 545079504 545081033 0.000000e+00 2643
3 TraesCS4B01G270000 chr4B 82.804 1291 184 21 3304 4584 348096810 348098072 0.000000e+00 1120
4 TraesCS4B01G270000 chr4B 82.585 1292 185 23 3304 4584 348053070 348054332 0.000000e+00 1103
5 TraesCS4B01G270000 chr7B 96.632 2286 73 4 896 3179 33834243 33831960 0.000000e+00 3792
6 TraesCS4B01G270000 chr7B 97.843 1530 33 0 3179 4708 78131032 78132561 0.000000e+00 2643
7 TraesCS4B01G270000 chr7B 97.978 1434 28 1 3276 4708 33831818 33830385 0.000000e+00 2486
8 TraesCS4B01G270000 chr7B 97.364 1100 28 1 3179 4278 85870759 85869661 0.000000e+00 1869
9 TraesCS4B01G270000 chr7B 94.629 1024 51 4 1797 2818 78129494 78130515 0.000000e+00 1583
10 TraesCS4B01G270000 chr7B 94.494 1017 54 2 1806 2821 85872288 85871273 0.000000e+00 1567
11 TraesCS4B01G270000 chr7B 93.161 892 48 7 1 887 639081387 639080504 0.000000e+00 1297
12 TraesCS4B01G270000 chr7B 93.443 793 43 8 938 1728 78128756 78129541 0.000000e+00 1168
13 TraesCS4B01G270000 chr7B 82.588 1275 197 12 3305 4571 347326302 347325045 0.000000e+00 1101
14 TraesCS4B01G270000 chr7B 93.809 533 28 5 2649 3179 85871363 85870834 0.000000e+00 797
15 TraesCS4B01G270000 chr7B 94.073 523 27 4 2659 3179 78130437 78130957 0.000000e+00 791
16 TraesCS4B01G270000 chr7B 93.654 520 26 5 886 1405 85873175 85872663 0.000000e+00 771
17 TraesCS4B01G270000 chr7B 93.333 450 19 1 4270 4708 85856781 85856332 0.000000e+00 654
18 TraesCS4B01G270000 chr7B 92.661 109 8 0 4595 4703 78132309 78132417 1.750000e-34 158
19 TraesCS4B01G270000 chr7B 91.743 109 9 0 4595 4703 85856584 85856476 8.160000e-33 152
20 TraesCS4B01G270000 chr5A 94.597 2295 105 12 896 3179 523866499 523864213 0.000000e+00 3533
21 TraesCS4B01G270000 chr5A 95.635 1535 47 4 3179 4708 523864138 523862619 0.000000e+00 2446
22 TraesCS4B01G270000 chr5A 96.317 733 24 3 1806 2536 569167366 569168097 0.000000e+00 1201
23 TraesCS4B01G270000 chr5A 95.907 733 26 4 1806 2536 456076266 456076996 0.000000e+00 1184
24 TraesCS4B01G270000 chr5A 95.673 416 17 1 1314 1728 569166990 569167405 0.000000e+00 667
25 TraesCS4B01G270000 chr7A 93.836 2320 100 15 896 3179 343356482 343358794 0.000000e+00 3452
26 TraesCS4B01G270000 chr7A 95.466 1191 39 1 3518 4708 343359666 343360841 0.000000e+00 1886
27 TraesCS4B01G270000 chr7A 94.314 510 23 4 896 1405 48007969 48007466 0.000000e+00 776
28 TraesCS4B01G270000 chr6B 97.837 1433 31 0 3276 4708 503892153 503890721 0.000000e+00 2475
29 TraesCS4B01G270000 chr6B 96.699 1424 46 1 1757 3179 503893718 503892295 0.000000e+00 2368
30 TraesCS4B01G270000 chr6B 97.404 809 19 2 896 1703 503894522 503893715 0.000000e+00 1376
31 TraesCS4B01G270000 chr6B 94.387 873 46 3 17 887 659608639 659609510 0.000000e+00 1338
32 TraesCS4B01G270000 chr6B 93.161 892 51 9 1 887 653880799 653879913 0.000000e+00 1301
33 TraesCS4B01G270000 chr6B 95.465 419 18 1 1314 1731 159804336 159803918 0.000000e+00 667
34 TraesCS4B01G270000 chr6B 100.000 73 0 0 3179 3251 503892220 503892148 8.220000e-28 135
35 TraesCS4B01G270000 chr4A 95.000 980 44 5 2196 3174 588581849 588580874 0.000000e+00 1533
36 TraesCS4B01G270000 chr4A 91.371 846 46 17 896 1738 96108433 96107612 0.000000e+00 1133
37 TraesCS4B01G270000 chr6A 94.903 981 45 5 2196 3174 201629133 201628156 0.000000e+00 1530
38 TraesCS4B01G270000 chr2D 93.834 892 46 7 1 887 598653299 598652412 0.000000e+00 1334
39 TraesCS4B01G270000 chr6D 93.577 903 39 13 1 887 450350728 450349829 0.000000e+00 1328
40 TraesCS4B01G270000 chr5B 93.266 891 56 4 1 888 30872662 30871773 0.000000e+00 1310
41 TraesCS4B01G270000 chr7D 93.184 895 48 8 1 887 70149331 70148442 0.000000e+00 1303
42 TraesCS4B01G270000 chr3B 93.161 892 51 9 1 887 89379135 89378249 0.000000e+00 1301
43 TraesCS4B01G270000 chr3B 94.314 510 23 4 896 1405 477327415 477326912 0.000000e+00 776
44 TraesCS4B01G270000 chr3B 95.465 419 18 1 1314 1731 477326913 477326495 0.000000e+00 667
45 TraesCS4B01G270000 chr2B 92.928 905 41 19 1 887 792125653 792126552 0.000000e+00 1295
46 TraesCS4B01G270000 chr2B 93.738 511 25 5 896 1405 198096414 198095910 0.000000e+00 760
47 TraesCS4B01G270000 chr3A 83.320 1277 181 14 3309 4576 501730466 501729213 0.000000e+00 1149


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G270000 chr4B 545062943 545067650 4707 False 8695.0 8695 100.00000 1 4708 1 chr4B.!!$F3 4707
1 TraesCS4B01G270000 chr4B 545077155 545081033 3878 False 3257.0 3871 97.58600 896 4708 2 chr4B.!!$F4 3812
2 TraesCS4B01G270000 chr4B 348096810 348098072 1262 False 1120.0 1120 82.80400 3304 4584 1 chr4B.!!$F2 1280
3 TraesCS4B01G270000 chr4B 348053070 348054332 1262 False 1103.0 1103 82.58500 3304 4584 1 chr4B.!!$F1 1280
4 TraesCS4B01G270000 chr7B 33830385 33834243 3858 True 3139.0 3792 97.30500 896 4708 2 chr7B.!!$R3 3812
5 TraesCS4B01G270000 chr7B 639080504 639081387 883 True 1297.0 1297 93.16100 1 887 1 chr7B.!!$R2 886
6 TraesCS4B01G270000 chr7B 78128756 78132561 3805 False 1268.6 2643 94.52980 938 4708 5 chr7B.!!$F1 3770
7 TraesCS4B01G270000 chr7B 85869661 85873175 3514 True 1251.0 1869 94.83025 886 4278 4 chr7B.!!$R5 3392
8 TraesCS4B01G270000 chr7B 347325045 347326302 1257 True 1101.0 1101 82.58800 3305 4571 1 chr7B.!!$R1 1266
9 TraesCS4B01G270000 chr5A 523862619 523866499 3880 True 2989.5 3533 95.11600 896 4708 2 chr5A.!!$R1 3812
10 TraesCS4B01G270000 chr5A 456076266 456076996 730 False 1184.0 1184 95.90700 1806 2536 1 chr5A.!!$F1 730
11 TraesCS4B01G270000 chr5A 569166990 569168097 1107 False 934.0 1201 95.99500 1314 2536 2 chr5A.!!$F2 1222
12 TraesCS4B01G270000 chr7A 343356482 343360841 4359 False 2669.0 3452 94.65100 896 4708 2 chr7A.!!$F1 3812
13 TraesCS4B01G270000 chr7A 48007466 48007969 503 True 776.0 776 94.31400 896 1405 1 chr7A.!!$R1 509
14 TraesCS4B01G270000 chr6B 503890721 503894522 3801 True 1588.5 2475 97.98500 896 4708 4 chr6B.!!$R3 3812
15 TraesCS4B01G270000 chr6B 659608639 659609510 871 False 1338.0 1338 94.38700 17 887 1 chr6B.!!$F1 870
16 TraesCS4B01G270000 chr6B 653879913 653880799 886 True 1301.0 1301 93.16100 1 887 1 chr6B.!!$R2 886
17 TraesCS4B01G270000 chr4A 588580874 588581849 975 True 1533.0 1533 95.00000 2196 3174 1 chr4A.!!$R2 978
18 TraesCS4B01G270000 chr4A 96107612 96108433 821 True 1133.0 1133 91.37100 896 1738 1 chr4A.!!$R1 842
19 TraesCS4B01G270000 chr6A 201628156 201629133 977 True 1530.0 1530 94.90300 2196 3174 1 chr6A.!!$R1 978
20 TraesCS4B01G270000 chr2D 598652412 598653299 887 True 1334.0 1334 93.83400 1 887 1 chr2D.!!$R1 886
21 TraesCS4B01G270000 chr6D 450349829 450350728 899 True 1328.0 1328 93.57700 1 887 1 chr6D.!!$R1 886
22 TraesCS4B01G270000 chr5B 30871773 30872662 889 True 1310.0 1310 93.26600 1 888 1 chr5B.!!$R1 887
23 TraesCS4B01G270000 chr7D 70148442 70149331 889 True 1303.0 1303 93.18400 1 887 1 chr7D.!!$R1 886
24 TraesCS4B01G270000 chr3B 89378249 89379135 886 True 1301.0 1301 93.16100 1 887 1 chr3B.!!$R1 886
25 TraesCS4B01G270000 chr3B 477326495 477327415 920 True 721.5 776 94.88950 896 1731 2 chr3B.!!$R2 835
26 TraesCS4B01G270000 chr2B 792125653 792126552 899 False 1295.0 1295 92.92800 1 887 1 chr2B.!!$F1 886
27 TraesCS4B01G270000 chr2B 198095910 198096414 504 True 760.0 760 93.73800 896 1405 1 chr2B.!!$R1 509
28 TraesCS4B01G270000 chr3A 501729213 501730466 1253 True 1149.0 1149 83.32000 3309 4576 1 chr3A.!!$R1 1267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
731 733 0.107848 ACTTAAATCCGGACTGCGGG 60.108 55.0 6.12 0.0 35.92 6.13 F
956 958 0.107848 GCACCCCGCTTACTGTACAT 60.108 55.0 0.00 0.0 37.77 2.29 F
2717 3249 0.612174 AGCTACTGGACAAGAGGCGA 60.612 55.0 0.00 0.0 34.11 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2655 3106 1.012841 GCCATCTGAAGCAGCAGTAC 58.987 55.000 0.00 0.00 37.20 2.73 R
2769 3301 1.454295 CCAGTGGCTGGCATATGCA 60.454 57.895 28.07 13.74 45.13 3.96 R
3816 5025 1.313091 TGCCGTAGTGCTGACTCGAT 61.313 55.000 0.00 0.00 33.21 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 2.335316 TCCTAAGGCGTCTCTCTCTC 57.665 55.000 0.00 0.00 0.00 3.20
100 101 1.133915 CCTAAGGCGTCTCTCTCTCCT 60.134 57.143 0.00 0.00 0.00 3.69
127 128 2.652113 CCCTCTCCCTCCCTCCCTT 61.652 68.421 0.00 0.00 0.00 3.95
189 190 1.017387 CTGCTATTTTCCCCTGCGAC 58.983 55.000 0.00 0.00 0.00 5.19
219 220 9.542462 TTTTAGAGGTATGCATGTGTAGTTATC 57.458 33.333 10.16 0.00 0.00 1.75
273 275 3.306433 GGGTGTTTATTTGCAATCGGGTT 60.306 43.478 0.00 0.00 0.00 4.11
299 301 3.418047 CTGGTACCAAAGGAAAACGGAT 58.582 45.455 17.11 0.00 0.00 4.18
300 302 3.824443 CTGGTACCAAAGGAAAACGGATT 59.176 43.478 17.11 0.00 0.00 3.01
341 343 6.827586 AGTTTGCTCCCAAAACGATATTTA 57.172 33.333 0.00 0.00 42.19 1.40
591 593 8.499403 TCACATATAACATGTTCAAATCGGAA 57.501 30.769 15.85 0.00 0.00 4.30
672 674 5.440685 CGCGGATGAATTACCTAAAACATC 58.559 41.667 0.00 0.00 34.37 3.06
673 675 5.440685 GCGGATGAATTACCTAAAACATCG 58.559 41.667 0.00 0.00 35.12 3.84
674 676 5.560183 GCGGATGAATTACCTAAAACATCGG 60.560 44.000 0.00 0.00 36.50 4.18
675 677 5.049680 CGGATGAATTACCTAAAACATCGGG 60.050 44.000 0.00 0.00 35.12 5.14
676 678 5.240844 GGATGAATTACCTAAAACATCGGGG 59.759 44.000 0.00 0.00 35.12 5.73
677 679 4.528920 TGAATTACCTAAAACATCGGGGG 58.471 43.478 0.00 0.00 0.00 5.40
699 701 8.020861 GGGGGTTTCGAAAATTGTAAAATAAC 57.979 34.615 13.10 0.00 0.00 1.89
700 702 7.148771 GGGGGTTTCGAAAATTGTAAAATAACG 60.149 37.037 13.10 0.00 0.00 3.18
701 703 7.148771 GGGGTTTCGAAAATTGTAAAATAACGG 60.149 37.037 13.10 0.00 0.00 4.44
702 704 7.381948 GGGTTTCGAAAATTGTAAAATAACGGT 59.618 33.333 13.10 0.00 0.00 4.83
703 705 8.754096 GGTTTCGAAAATTGTAAAATAACGGTT 58.246 29.630 13.10 0.00 0.00 4.44
706 708 8.283340 TCGAAAATTGTAAAATAACGGTTTGG 57.717 30.769 0.00 0.00 0.00 3.28
707 709 7.381678 TCGAAAATTGTAAAATAACGGTTTGGG 59.618 33.333 0.00 0.00 0.00 4.12
708 710 7.169476 CGAAAATTGTAAAATAACGGTTTGGGT 59.831 33.333 0.00 0.00 0.00 4.51
709 711 7.716768 AAATTGTAAAATAACGGTTTGGGTG 57.283 32.000 0.00 0.00 0.00 4.61
710 712 5.848833 TTGTAAAATAACGGTTTGGGTGT 57.151 34.783 0.00 0.00 0.00 4.16
711 713 5.184340 TGTAAAATAACGGTTTGGGTGTG 57.816 39.130 0.00 0.00 0.00 3.82
712 714 4.885907 TGTAAAATAACGGTTTGGGTGTGA 59.114 37.500 0.00 0.00 0.00 3.58
713 715 3.994204 AAATAACGGTTTGGGTGTGAC 57.006 42.857 0.00 0.00 0.00 3.67
714 716 2.943036 ATAACGGTTTGGGTGTGACT 57.057 45.000 0.00 0.00 0.00 3.41
715 717 2.713863 TAACGGTTTGGGTGTGACTT 57.286 45.000 0.00 0.00 0.00 3.01
716 718 2.713863 AACGGTTTGGGTGTGACTTA 57.286 45.000 0.00 0.00 0.00 2.24
717 719 2.713863 ACGGTTTGGGTGTGACTTAA 57.286 45.000 0.00 0.00 0.00 1.85
718 720 3.002038 ACGGTTTGGGTGTGACTTAAA 57.998 42.857 0.00 0.00 0.00 1.52
719 721 3.558033 ACGGTTTGGGTGTGACTTAAAT 58.442 40.909 0.00 0.00 0.00 1.40
720 722 3.566742 ACGGTTTGGGTGTGACTTAAATC 59.433 43.478 0.00 0.00 0.00 2.17
721 723 3.057806 CGGTTTGGGTGTGACTTAAATCC 60.058 47.826 0.00 0.00 0.00 3.01
722 724 3.057806 GGTTTGGGTGTGACTTAAATCCG 60.058 47.826 0.00 0.00 0.00 4.18
723 725 2.483014 TGGGTGTGACTTAAATCCGG 57.517 50.000 0.00 0.00 0.00 5.14
724 726 1.979308 TGGGTGTGACTTAAATCCGGA 59.021 47.619 6.61 6.61 0.00 5.14
725 727 2.289819 TGGGTGTGACTTAAATCCGGAC 60.290 50.000 6.12 0.00 0.00 4.79
726 728 2.027469 GGGTGTGACTTAAATCCGGACT 60.027 50.000 6.12 0.00 0.00 3.85
727 729 3.000727 GGTGTGACTTAAATCCGGACTG 58.999 50.000 6.12 0.00 0.00 3.51
728 730 2.415512 GTGTGACTTAAATCCGGACTGC 59.584 50.000 6.12 0.00 0.00 4.40
729 731 1.659098 GTGACTTAAATCCGGACTGCG 59.341 52.381 6.12 0.00 0.00 5.18
730 732 1.287425 GACTTAAATCCGGACTGCGG 58.713 55.000 6.12 1.83 0.00 5.69
731 733 0.107848 ACTTAAATCCGGACTGCGGG 60.108 55.000 6.12 0.00 35.92 6.13
732 734 0.107848 CTTAAATCCGGACTGCGGGT 60.108 55.000 6.12 0.00 36.04 5.28
733 735 0.325602 TTAAATCCGGACTGCGGGTT 59.674 50.000 6.12 5.26 36.04 4.11
734 736 0.391927 TAAATCCGGACTGCGGGTTG 60.392 55.000 6.12 0.00 36.04 3.77
735 737 2.119484 AAATCCGGACTGCGGGTTGA 62.119 55.000 6.12 0.00 36.04 3.18
736 738 1.910580 AATCCGGACTGCGGGTTGAT 61.911 55.000 6.12 0.00 36.04 2.57
737 739 1.910580 ATCCGGACTGCGGGTTGATT 61.911 55.000 6.12 0.00 36.04 2.57
738 740 1.674322 CCGGACTGCGGGTTGATTT 60.674 57.895 0.00 0.00 0.00 2.17
739 741 1.644786 CCGGACTGCGGGTTGATTTC 61.645 60.000 0.00 0.00 0.00 2.17
740 742 0.953471 CGGACTGCGGGTTGATTTCA 60.953 55.000 0.00 0.00 0.00 2.69
741 743 1.243902 GGACTGCGGGTTGATTTCAA 58.756 50.000 0.00 0.00 0.00 2.69
742 744 1.818674 GGACTGCGGGTTGATTTCAAT 59.181 47.619 0.00 0.00 38.24 2.57
743 745 3.013921 GGACTGCGGGTTGATTTCAATA 58.986 45.455 0.00 0.00 38.24 1.90
744 746 3.442273 GGACTGCGGGTTGATTTCAATAA 59.558 43.478 0.00 0.00 38.24 1.40
745 747 4.082463 GGACTGCGGGTTGATTTCAATAAA 60.082 41.667 0.00 0.00 38.24 1.40
746 748 5.461032 ACTGCGGGTTGATTTCAATAAAA 57.539 34.783 0.00 0.00 38.24 1.52
747 749 6.036577 ACTGCGGGTTGATTTCAATAAAAT 57.963 33.333 0.00 0.00 40.34 1.82
748 750 7.164230 ACTGCGGGTTGATTTCAATAAAATA 57.836 32.000 0.00 0.00 37.70 1.40
749 751 7.781056 ACTGCGGGTTGATTTCAATAAAATAT 58.219 30.769 0.00 0.00 37.70 1.28
750 752 8.908903 ACTGCGGGTTGATTTCAATAAAATATA 58.091 29.630 0.00 0.00 37.70 0.86
751 753 9.912634 CTGCGGGTTGATTTCAATAAAATATAT 57.087 29.630 0.00 0.00 37.70 0.86
752 754 9.689976 TGCGGGTTGATTTCAATAAAATATATG 57.310 29.630 0.00 0.00 37.70 1.78
753 755 9.139174 GCGGGTTGATTTCAATAAAATATATGG 57.861 33.333 0.00 0.00 37.70 2.74
807 809 8.922738 TCGTTTTAACTTAAAATAGAACTGCG 57.077 30.769 9.42 6.54 39.56 5.18
808 810 8.011106 TCGTTTTAACTTAAAATAGAACTGCGG 58.989 33.333 9.42 0.00 39.56 5.69
809 811 7.269724 CGTTTTAACTTAAAATAGAACTGCGGG 59.730 37.037 9.42 0.00 39.56 6.13
810 812 7.748691 TTTAACTTAAAATAGAACTGCGGGT 57.251 32.000 0.00 0.00 0.00 5.28
811 813 7.748691 TTAACTTAAAATAGAACTGCGGGTT 57.251 32.000 0.00 0.00 41.40 4.11
812 814 5.622770 ACTTAAAATAGAACTGCGGGTTG 57.377 39.130 0.00 0.00 38.41 3.77
813 815 5.310451 ACTTAAAATAGAACTGCGGGTTGA 58.690 37.500 0.00 0.00 38.41 3.18
814 816 5.766174 ACTTAAAATAGAACTGCGGGTTGAA 59.234 36.000 0.00 0.00 38.41 2.69
815 817 6.433093 ACTTAAAATAGAACTGCGGGTTGAAT 59.567 34.615 0.00 0.00 38.41 2.57
816 818 5.722021 AAAATAGAACTGCGGGTTGAATT 57.278 34.783 0.00 0.00 38.41 2.17
817 819 4.965119 AATAGAACTGCGGGTTGAATTC 57.035 40.909 0.00 0.00 38.41 2.17
818 820 2.568623 AGAACTGCGGGTTGAATTCT 57.431 45.000 7.05 0.00 38.41 2.40
819 821 2.427506 AGAACTGCGGGTTGAATTCTC 58.572 47.619 7.05 0.06 38.41 2.87
820 822 2.039084 AGAACTGCGGGTTGAATTCTCT 59.961 45.455 7.05 0.00 38.41 3.10
821 823 1.813513 ACTGCGGGTTGAATTCTCTG 58.186 50.000 7.05 3.16 0.00 3.35
822 824 1.347707 ACTGCGGGTTGAATTCTCTGA 59.652 47.619 7.05 0.00 0.00 3.27
823 825 2.224523 ACTGCGGGTTGAATTCTCTGAA 60.225 45.455 7.05 0.00 0.00 3.02
824 826 2.813754 CTGCGGGTTGAATTCTCTGAAA 59.186 45.455 7.05 0.00 0.00 2.69
825 827 3.420893 TGCGGGTTGAATTCTCTGAAAT 58.579 40.909 7.05 0.00 0.00 2.17
826 828 4.584874 TGCGGGTTGAATTCTCTGAAATA 58.415 39.130 7.05 0.00 0.00 1.40
827 829 4.635765 TGCGGGTTGAATTCTCTGAAATAG 59.364 41.667 7.05 0.00 0.00 1.73
828 830 4.876107 GCGGGTTGAATTCTCTGAAATAGA 59.124 41.667 7.05 0.00 0.00 1.98
844 846 9.586732 TCTGAAATAGAGGGATTTTTCTGAAAA 57.413 29.630 11.33 11.33 38.96 2.29
856 858 7.642071 ATTTTTCTGAAAAATGTCATGACGG 57.358 32.000 30.12 0.63 46.30 4.79
857 859 6.384258 TTTTCTGAAAAATGTCATGACGGA 57.616 33.333 20.54 4.80 29.44 4.69
858 860 5.356882 TTCTGAAAAATGTCATGACGGAC 57.643 39.130 20.54 9.24 38.29 4.79
859 861 3.431912 TCTGAAAAATGTCATGACGGACG 59.568 43.478 20.54 4.31 40.72 4.79
860 862 3.394719 TGAAAAATGTCATGACGGACGA 58.605 40.909 20.54 3.25 40.72 4.20
861 863 3.810386 TGAAAAATGTCATGACGGACGAA 59.190 39.130 20.54 2.48 40.72 3.85
862 864 4.273724 TGAAAAATGTCATGACGGACGAAA 59.726 37.500 20.54 1.72 40.72 3.46
863 865 4.404507 AAAATGTCATGACGGACGAAAG 57.595 40.909 20.54 0.00 40.72 2.62
864 866 3.313012 AATGTCATGACGGACGAAAGA 57.687 42.857 20.54 0.20 40.72 2.52
865 867 2.804697 TGTCATGACGGACGAAAGAA 57.195 45.000 20.54 0.00 40.72 2.52
866 868 3.100658 TGTCATGACGGACGAAAGAAA 57.899 42.857 20.54 0.00 40.72 2.52
867 869 2.798283 TGTCATGACGGACGAAAGAAAC 59.202 45.455 20.54 0.00 40.72 2.78
868 870 2.157085 GTCATGACGGACGAAAGAAACC 59.843 50.000 10.69 0.00 0.00 3.27
869 871 1.463444 CATGACGGACGAAAGAAACCC 59.537 52.381 0.00 0.00 0.00 4.11
870 872 0.464870 TGACGGACGAAAGAAACCCA 59.535 50.000 0.00 0.00 0.00 4.51
871 873 1.134461 TGACGGACGAAAGAAACCCAA 60.134 47.619 0.00 0.00 0.00 4.12
872 874 2.148768 GACGGACGAAAGAAACCCAAT 58.851 47.619 0.00 0.00 0.00 3.16
873 875 2.551032 GACGGACGAAAGAAACCCAATT 59.449 45.455 0.00 0.00 0.00 2.32
874 876 2.953648 ACGGACGAAAGAAACCCAATTT 59.046 40.909 0.00 0.00 0.00 1.82
875 877 3.243267 ACGGACGAAAGAAACCCAATTTG 60.243 43.478 0.00 0.00 0.00 2.32
876 878 3.057019 GGACGAAAGAAACCCAATTTGC 58.943 45.455 0.00 0.00 0.00 3.68
877 879 3.243737 GGACGAAAGAAACCCAATTTGCT 60.244 43.478 0.00 0.00 0.00 3.91
878 880 4.368315 GACGAAAGAAACCCAATTTGCTT 58.632 39.130 0.00 0.00 0.00 3.91
879 881 4.765273 ACGAAAGAAACCCAATTTGCTTT 58.235 34.783 0.00 0.00 33.79 3.51
880 882 5.908341 ACGAAAGAAACCCAATTTGCTTTA 58.092 33.333 0.00 0.00 32.50 1.85
881 883 6.521162 ACGAAAGAAACCCAATTTGCTTTAT 58.479 32.000 0.00 0.00 32.50 1.40
882 884 6.989759 ACGAAAGAAACCCAATTTGCTTTATT 59.010 30.769 0.00 0.00 32.50 1.40
883 885 8.145122 ACGAAAGAAACCCAATTTGCTTTATTA 58.855 29.630 0.00 0.00 32.50 0.98
884 886 9.150348 CGAAAGAAACCCAATTTGCTTTATTAT 57.850 29.630 0.00 0.00 32.50 1.28
956 958 0.107848 GCACCCCGCTTACTGTACAT 60.108 55.000 0.00 0.00 37.77 2.29
1003 1005 5.163301 GGGTCAAGATAAGCCTACTCAATGA 60.163 44.000 0.00 0.00 0.00 2.57
1546 1790 4.160642 TGCAAGAGATGAACCATATGCT 57.839 40.909 0.00 0.00 0.00 3.79
2143 2539 4.007644 CACTCCCAGCAGGACGCA 62.008 66.667 0.00 0.00 46.13 5.24
2168 2564 3.334881 CCCCCTTCCAGGATATAAGCAAT 59.665 47.826 0.00 0.00 37.67 3.56
2182 2578 8.850156 GGATATAAGCAATAACCAAACATCAGT 58.150 33.333 0.00 0.00 34.03 3.41
2276 2673 5.304686 TCATAACCCAGTCACTCAAGTTT 57.695 39.130 0.00 0.00 0.00 2.66
2454 2904 2.279935 TGGCCTACAAAACGGAACAT 57.720 45.000 3.32 0.00 0.00 2.71
2462 2912 1.025812 AAAACGGAACATCGGCACAA 58.974 45.000 0.00 0.00 0.00 3.33
2572 3023 8.082852 TGTTCAGTCACTAATGAGACTAAGAAC 58.917 37.037 14.04 14.04 41.09 3.01
2574 3025 6.719829 TCAGTCACTAATGAGACTAAGAACCA 59.280 38.462 0.00 0.00 41.09 3.67
2655 3106 6.436843 AACCCGTGAGCAAAATAGAAATAG 57.563 37.500 0.00 0.00 0.00 1.73
2717 3249 0.612174 AGCTACTGGACAAGAGGCGA 60.612 55.000 0.00 0.00 34.11 5.54
2728 3260 1.207089 CAAGAGGCGATCACCCAACTA 59.793 52.381 0.00 0.00 0.00 2.24
2729 3261 1.794714 AGAGGCGATCACCCAACTAT 58.205 50.000 0.00 0.00 0.00 2.12
2769 3301 3.561143 TCAATGCCAGTAACCTTGTGTT 58.439 40.909 0.00 0.00 41.11 3.32
2782 3395 0.531657 TTGTGTTGCATATGCCAGCC 59.468 50.000 24.54 10.81 41.18 4.85
3011 3624 4.538490 ACAACCCCCAAGTCAATATAGTCA 59.462 41.667 0.00 0.00 0.00 3.41
3259 3998 9.887189 CGATAATATGTGTCATAAGCGTAATTC 57.113 33.333 0.00 0.00 0.00 2.17
3621 4830 0.826715 GACTGCTGCCACTATGGAGA 59.173 55.000 0.00 0.00 40.96 3.71
3816 5025 2.303022 GTCTTGGAGTCACCCTTGATCA 59.697 50.000 0.00 0.00 38.00 2.92
3830 5039 3.067320 CCTTGATCATCGAGTCAGCACTA 59.933 47.826 0.00 0.00 30.63 2.74
3891 5101 2.093306 TTGTACCACGCTCTTGATGG 57.907 50.000 0.00 0.00 39.57 3.51
4316 5527 5.665360 TCATATCCACTGTTCTTCCCACATA 59.335 40.000 0.00 0.00 0.00 2.29
4430 5644 3.076032 AGCCTATGGTTTTCCTTCAGGTT 59.924 43.478 0.00 0.00 41.38 3.50
4537 5759 5.536161 AGAACAAGTTGGTCATAAAGCACAT 59.464 36.000 22.58 0.00 36.30 3.21
4541 5763 6.015180 ACAAGTTGGTCATAAAGCACATCATT 60.015 34.615 7.96 0.00 34.44 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.579738 GGCGAGGGTGAGAAGGAC 59.420 66.667 0.00 0.00 0.00 3.85
98 99 0.105709 GGGAGAGGGAGGAGAGAAGG 60.106 65.000 0.00 0.00 0.00 3.46
100 101 0.930726 GAGGGAGAGGGAGGAGAGAA 59.069 60.000 0.00 0.00 0.00 2.87
127 128 3.938963 GAGAAAGCGAGAGAGAGAGAGAA 59.061 47.826 0.00 0.00 0.00 2.87
173 174 4.718940 AAAATGTCGCAGGGGAAAATAG 57.281 40.909 0.00 0.00 0.00 1.73
196 197 6.713450 TCGATAACTACACATGCATACCTCTA 59.287 38.462 0.00 0.00 0.00 2.43
250 251 2.418060 CCCGATTGCAAATAAACACCCC 60.418 50.000 1.71 0.00 0.00 4.95
273 275 2.033448 CCTTTGGTACCAGCGGCA 59.967 61.111 15.65 0.00 0.00 5.69
279 281 3.512219 ATCCGTTTTCCTTTGGTACCA 57.488 42.857 11.60 11.60 0.00 3.25
285 287 4.542735 AGCGTAAAATCCGTTTTCCTTTG 58.457 39.130 0.00 0.00 38.44 2.77
413 415 9.763465 AACCGTAACTTCGATTTTAACATATTG 57.237 29.630 0.00 0.00 0.00 1.90
626 628 7.112009 CGCGGATCATATTTAAGTCAAACAATG 59.888 37.037 0.00 0.00 0.00 2.82
674 676 7.148771 CGTTATTTTACAATTTTCGAAACCCCC 60.149 37.037 10.79 0.00 0.00 5.40
675 677 7.148771 CCGTTATTTTACAATTTTCGAAACCCC 60.149 37.037 10.79 0.00 0.00 4.95
676 678 7.381948 ACCGTTATTTTACAATTTTCGAAACCC 59.618 33.333 10.79 0.00 0.00 4.11
677 679 8.284557 ACCGTTATTTTACAATTTTCGAAACC 57.715 30.769 10.79 0.00 0.00 3.27
680 682 8.753175 CCAAACCGTTATTTTACAATTTTCGAA 58.247 29.630 0.00 0.00 0.00 3.71
681 683 7.381678 CCCAAACCGTTATTTTACAATTTTCGA 59.618 33.333 0.00 0.00 0.00 3.71
682 684 7.169476 ACCCAAACCGTTATTTTACAATTTTCG 59.831 33.333 0.00 0.00 0.00 3.46
683 685 8.277018 CACCCAAACCGTTATTTTACAATTTTC 58.723 33.333 0.00 0.00 0.00 2.29
684 686 7.769507 ACACCCAAACCGTTATTTTACAATTTT 59.230 29.630 0.00 0.00 0.00 1.82
685 687 7.224949 CACACCCAAACCGTTATTTTACAATTT 59.775 33.333 0.00 0.00 0.00 1.82
686 688 6.702282 CACACCCAAACCGTTATTTTACAATT 59.298 34.615 0.00 0.00 0.00 2.32
687 689 6.040616 TCACACCCAAACCGTTATTTTACAAT 59.959 34.615 0.00 0.00 0.00 2.71
688 690 5.359009 TCACACCCAAACCGTTATTTTACAA 59.641 36.000 0.00 0.00 0.00 2.41
689 691 4.885907 TCACACCCAAACCGTTATTTTACA 59.114 37.500 0.00 0.00 0.00 2.41
690 692 5.008911 AGTCACACCCAAACCGTTATTTTAC 59.991 40.000 0.00 0.00 0.00 2.01
691 693 5.131784 AGTCACACCCAAACCGTTATTTTA 58.868 37.500 0.00 0.00 0.00 1.52
692 694 3.955551 AGTCACACCCAAACCGTTATTTT 59.044 39.130 0.00 0.00 0.00 1.82
693 695 3.558033 AGTCACACCCAAACCGTTATTT 58.442 40.909 0.00 0.00 0.00 1.40
694 696 3.217681 AGTCACACCCAAACCGTTATT 57.782 42.857 0.00 0.00 0.00 1.40
695 697 2.943036 AGTCACACCCAAACCGTTAT 57.057 45.000 0.00 0.00 0.00 1.89
696 698 2.713863 AAGTCACACCCAAACCGTTA 57.286 45.000 0.00 0.00 0.00 3.18
697 699 2.713863 TAAGTCACACCCAAACCGTT 57.286 45.000 0.00 0.00 0.00 4.44
698 700 2.713863 TTAAGTCACACCCAAACCGT 57.286 45.000 0.00 0.00 0.00 4.83
699 701 3.057806 GGATTTAAGTCACACCCAAACCG 60.058 47.826 0.03 0.00 0.00 4.44
700 702 3.057806 CGGATTTAAGTCACACCCAAACC 60.058 47.826 0.03 0.00 0.00 3.27
701 703 3.057806 CCGGATTTAAGTCACACCCAAAC 60.058 47.826 0.00 0.00 0.00 2.93
702 704 3.150767 CCGGATTTAAGTCACACCCAAA 58.849 45.455 0.00 0.00 0.00 3.28
703 705 2.372504 TCCGGATTTAAGTCACACCCAA 59.627 45.455 0.00 0.00 0.00 4.12
704 706 1.979308 TCCGGATTTAAGTCACACCCA 59.021 47.619 0.00 0.00 0.00 4.51
705 707 2.027469 AGTCCGGATTTAAGTCACACCC 60.027 50.000 7.81 0.00 0.00 4.61
706 708 3.000727 CAGTCCGGATTTAAGTCACACC 58.999 50.000 7.81 0.00 0.00 4.16
707 709 2.415512 GCAGTCCGGATTTAAGTCACAC 59.584 50.000 7.81 0.00 0.00 3.82
708 710 2.695359 GCAGTCCGGATTTAAGTCACA 58.305 47.619 7.81 0.00 0.00 3.58
709 711 1.659098 CGCAGTCCGGATTTAAGTCAC 59.341 52.381 7.81 0.00 0.00 3.67
710 712 2.004583 CGCAGTCCGGATTTAAGTCA 57.995 50.000 7.81 0.00 0.00 3.41
721 723 0.953471 TGAAATCAACCCGCAGTCCG 60.953 55.000 0.00 0.00 0.00 4.79
722 724 1.243902 TTGAAATCAACCCGCAGTCC 58.756 50.000 0.00 0.00 0.00 3.85
723 725 4.695217 TTATTGAAATCAACCCGCAGTC 57.305 40.909 0.00 0.00 38.86 3.51
724 726 5.461032 TTTTATTGAAATCAACCCGCAGT 57.539 34.783 0.00 0.00 38.86 4.40
725 727 9.912634 ATATATTTTATTGAAATCAACCCGCAG 57.087 29.630 0.00 0.00 38.80 5.18
726 728 9.689976 CATATATTTTATTGAAATCAACCCGCA 57.310 29.630 0.00 0.00 38.80 5.69
727 729 9.139174 CCATATATTTTATTGAAATCAACCCGC 57.861 33.333 0.00 0.00 38.80 6.13
781 783 9.372541 CGCAGTTCTATTTTAAGTTAAAACGAA 57.627 29.630 20.28 20.18 40.12 3.85
782 784 8.011106 CCGCAGTTCTATTTTAAGTTAAAACGA 58.989 33.333 20.28 16.54 40.12 3.85
783 785 7.269724 CCCGCAGTTCTATTTTAAGTTAAAACG 59.730 37.037 20.28 15.93 40.12 3.60
784 786 8.077991 ACCCGCAGTTCTATTTTAAGTTAAAAC 58.922 33.333 20.28 10.14 40.12 2.43
785 787 8.168790 ACCCGCAGTTCTATTTTAAGTTAAAA 57.831 30.769 20.17 20.17 41.38 1.52
786 788 7.748691 ACCCGCAGTTCTATTTTAAGTTAAA 57.251 32.000 3.88 3.88 0.00 1.52
787 789 7.444792 TCAACCCGCAGTTCTATTTTAAGTTAA 59.555 33.333 0.00 0.00 36.18 2.01
788 790 6.935771 TCAACCCGCAGTTCTATTTTAAGTTA 59.064 34.615 0.00 0.00 36.18 2.24
789 791 5.766174 TCAACCCGCAGTTCTATTTTAAGTT 59.234 36.000 0.00 0.00 36.18 2.66
790 792 5.310451 TCAACCCGCAGTTCTATTTTAAGT 58.690 37.500 0.00 0.00 36.18 2.24
791 793 5.873179 TCAACCCGCAGTTCTATTTTAAG 57.127 39.130 0.00 0.00 36.18 1.85
792 794 6.827586 ATTCAACCCGCAGTTCTATTTTAA 57.172 33.333 0.00 0.00 36.18 1.52
793 795 6.657541 AGAATTCAACCCGCAGTTCTATTTTA 59.342 34.615 8.44 0.00 36.18 1.52
794 796 5.476945 AGAATTCAACCCGCAGTTCTATTTT 59.523 36.000 8.44 0.00 36.18 1.82
795 797 5.010282 AGAATTCAACCCGCAGTTCTATTT 58.990 37.500 8.44 0.00 36.18 1.40
796 798 4.589908 AGAATTCAACCCGCAGTTCTATT 58.410 39.130 8.44 0.00 36.18 1.73
797 799 4.080863 AGAGAATTCAACCCGCAGTTCTAT 60.081 41.667 8.44 0.00 36.18 1.98
798 800 3.260884 AGAGAATTCAACCCGCAGTTCTA 59.739 43.478 8.44 0.00 36.18 2.10
799 801 2.039084 AGAGAATTCAACCCGCAGTTCT 59.961 45.455 8.44 0.00 36.18 3.01
800 802 2.160417 CAGAGAATTCAACCCGCAGTTC 59.840 50.000 8.44 0.00 36.18 3.01
801 803 2.154462 CAGAGAATTCAACCCGCAGTT 58.846 47.619 8.44 0.00 40.16 3.16
802 804 1.347707 TCAGAGAATTCAACCCGCAGT 59.652 47.619 8.44 0.00 0.00 4.40
803 805 2.099141 TCAGAGAATTCAACCCGCAG 57.901 50.000 8.44 0.00 0.00 5.18
804 806 2.559698 TTCAGAGAATTCAACCCGCA 57.440 45.000 8.44 0.00 0.00 5.69
805 807 4.876107 TCTATTTCAGAGAATTCAACCCGC 59.124 41.667 8.44 0.00 0.00 6.13
818 820 9.586732 TTTTCAGAAAAATCCCTCTATTTCAGA 57.413 29.630 5.81 0.00 34.91 3.27
824 826 9.312904 TGACATTTTTCAGAAAAATCCCTCTAT 57.687 29.630 25.06 6.07 45.32 1.98
825 827 8.704849 TGACATTTTTCAGAAAAATCCCTCTA 57.295 30.769 25.06 10.36 45.32 2.43
826 828 7.601705 TGACATTTTTCAGAAAAATCCCTCT 57.398 32.000 25.06 7.33 45.32 3.69
827 829 8.090214 TCATGACATTTTTCAGAAAAATCCCTC 58.910 33.333 25.06 19.71 45.32 4.30
828 830 7.874528 GTCATGACATTTTTCAGAAAAATCCCT 59.125 33.333 25.06 13.86 45.32 4.20
829 831 7.148755 CGTCATGACATTTTTCAGAAAAATCCC 60.149 37.037 25.06 19.90 45.32 3.85
830 832 7.148755 CCGTCATGACATTTTTCAGAAAAATCC 60.149 37.037 25.06 20.16 45.32 3.01
831 833 7.594758 TCCGTCATGACATTTTTCAGAAAAATC 59.405 33.333 25.06 18.37 45.32 2.17
833 835 6.695278 GTCCGTCATGACATTTTTCAGAAAAA 59.305 34.615 24.93 20.82 43.76 1.94
834 836 6.205784 GTCCGTCATGACATTTTTCAGAAAA 58.794 36.000 24.93 4.06 38.96 2.29
835 837 5.559991 CGTCCGTCATGACATTTTTCAGAAA 60.560 40.000 24.93 0.00 34.88 2.52
836 838 4.084066 CGTCCGTCATGACATTTTTCAGAA 60.084 41.667 24.93 0.00 34.88 3.02
837 839 3.431912 CGTCCGTCATGACATTTTTCAGA 59.568 43.478 24.93 5.84 34.88 3.27
838 840 3.431912 TCGTCCGTCATGACATTTTTCAG 59.568 43.478 24.93 6.41 34.88 3.02
839 841 3.394719 TCGTCCGTCATGACATTTTTCA 58.605 40.909 24.93 0.11 34.88 2.69
840 842 4.398549 TTCGTCCGTCATGACATTTTTC 57.601 40.909 24.93 8.17 34.88 2.29
841 843 4.513692 TCTTTCGTCCGTCATGACATTTTT 59.486 37.500 24.93 0.00 34.88 1.94
842 844 4.062293 TCTTTCGTCCGTCATGACATTTT 58.938 39.130 24.93 0.00 34.88 1.82
843 845 3.659786 TCTTTCGTCCGTCATGACATTT 58.340 40.909 24.93 0.00 34.88 2.32
844 846 3.313012 TCTTTCGTCCGTCATGACATT 57.687 42.857 24.93 0.00 34.88 2.71
845 847 3.313012 TTCTTTCGTCCGTCATGACAT 57.687 42.857 24.93 0.00 34.88 3.06
846 848 2.798283 GTTTCTTTCGTCCGTCATGACA 59.202 45.455 24.93 4.12 34.88 3.58
847 849 2.157085 GGTTTCTTTCGTCCGTCATGAC 59.843 50.000 16.21 16.21 0.00 3.06
848 850 2.409975 GGTTTCTTTCGTCCGTCATGA 58.590 47.619 0.00 0.00 0.00 3.07
849 851 1.463444 GGGTTTCTTTCGTCCGTCATG 59.537 52.381 0.00 0.00 0.00 3.07
850 852 1.071071 TGGGTTTCTTTCGTCCGTCAT 59.929 47.619 0.00 0.00 0.00 3.06
851 853 0.464870 TGGGTTTCTTTCGTCCGTCA 59.535 50.000 0.00 0.00 0.00 4.35
852 854 1.585297 TTGGGTTTCTTTCGTCCGTC 58.415 50.000 0.00 0.00 0.00 4.79
853 855 2.265589 ATTGGGTTTCTTTCGTCCGT 57.734 45.000 0.00 0.00 0.00 4.69
854 856 3.305110 CAAATTGGGTTTCTTTCGTCCG 58.695 45.455 0.00 0.00 0.00 4.79
855 857 3.057019 GCAAATTGGGTTTCTTTCGTCC 58.943 45.455 0.00 0.00 0.00 4.79
856 858 3.977427 AGCAAATTGGGTTTCTTTCGTC 58.023 40.909 0.00 0.00 0.00 4.20
857 859 4.400529 AAGCAAATTGGGTTTCTTTCGT 57.599 36.364 0.00 0.00 0.00 3.85
858 860 7.420184 AATAAAGCAAATTGGGTTTCTTTCG 57.580 32.000 13.18 0.00 39.10 3.46
956 958 6.434028 CCCTCCAATTGATGTGTTTTCTTCTA 59.566 38.462 7.12 0.00 0.00 2.10
1003 1005 7.612677 ACTTTTCTGTATTCACGGTTAGATCT 58.387 34.615 0.00 0.00 32.43 2.75
1546 1790 7.459795 TTGGTTTTCATAACATATGCTCACA 57.540 32.000 1.58 0.00 0.00 3.58
2182 2578 6.591935 GTCCTGACTGGGTTATGATCAATAA 58.408 40.000 0.00 0.00 36.20 1.40
2276 2673 7.545615 CAGTTCAGCAGTTGTAATACTGTATCA 59.454 37.037 0.00 0.00 45.76 2.15
2327 2724 6.441222 TCTCTATCCCTCTGCCTTTTTAGTA 58.559 40.000 0.00 0.00 0.00 1.82
2454 2904 1.822371 TGATACAGCTAGTTGTGCCGA 59.178 47.619 21.16 2.48 32.56 5.54
2462 2912 8.486210 TCATCATTACCTTTTGATACAGCTAGT 58.514 33.333 0.00 0.00 31.50 2.57
2572 3023 1.842381 AACGCTCCCTTTCCCTCTGG 61.842 60.000 0.00 0.00 0.00 3.86
2574 3025 1.486726 CATAACGCTCCCTTTCCCTCT 59.513 52.381 0.00 0.00 0.00 3.69
2655 3106 1.012841 GCCATCTGAAGCAGCAGTAC 58.987 55.000 0.00 0.00 37.20 2.73
2717 3249 6.992715 GCAGTAATGTTCTATAGTTGGGTGAT 59.007 38.462 0.00 0.00 0.00 3.06
2728 3260 8.616076 GCATTGAAAGTAGCAGTAATGTTCTAT 58.384 33.333 0.00 0.00 0.00 1.98
2729 3261 7.065803 GGCATTGAAAGTAGCAGTAATGTTCTA 59.934 37.037 0.00 0.00 0.00 2.10
2769 3301 1.454295 CCAGTGGCTGGCATATGCA 60.454 57.895 28.07 13.74 45.13 3.96
2782 3395 1.669115 CACCGCCTCTTGTCCAGTG 60.669 63.158 0.00 0.00 0.00 3.66
2999 3612 7.270793 GGTACGTCGATTGATGACTATATTGAC 59.729 40.741 9.27 0.00 35.04 3.18
3011 3624 0.750850 CCTGGGGTACGTCGATTGAT 59.249 55.000 0.00 0.00 0.00 2.57
3259 3998 4.811024 AGTTATGATGCATAAGGTCACGTG 59.189 41.667 9.94 9.94 37.06 4.49
3615 4824 2.214376 TTGGAACCGCAAATCTCCAT 57.786 45.000 0.00 0.00 37.78 3.41
3621 4830 2.014128 CCTCGTATTGGAACCGCAAAT 58.986 47.619 0.00 0.00 0.00 2.32
3816 5025 1.313091 TGCCGTAGTGCTGACTCGAT 61.313 55.000 0.00 0.00 33.21 3.59
3830 5039 3.838244 ATATACACATGTTCCTGCCGT 57.162 42.857 0.00 0.00 0.00 5.68
3891 5101 3.448686 CCATTATCACCAGACGACAGAC 58.551 50.000 0.00 0.00 0.00 3.51
4316 5527 2.472029 ACGATTCCAACTGATCTCCCT 58.528 47.619 0.00 0.00 0.00 4.20
4463 5685 9.715121 ATTGATGACTGCATAAGTTTCAATTTT 57.285 25.926 9.81 0.00 42.98 1.82
4537 5759 4.574674 ATCAGTGGGTTGCTCTTAATGA 57.425 40.909 0.00 0.00 0.00 2.57
4541 5763 4.288626 AGGTAAATCAGTGGGTTGCTCTTA 59.711 41.667 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.