Multiple sequence alignment - TraesCS4B01G269000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G269000 chr4B 100.000 2414 0 0 1 2414 544036254 544033841 0.000000e+00 4458.0
1 TraesCS4B01G269000 chr4B 92.953 1121 72 4 511 1629 605505229 605504114 0.000000e+00 1626.0
2 TraesCS4B01G269000 chr3B 94.844 1125 56 1 508 1630 807438876 807437752 0.000000e+00 1755.0
3 TraesCS4B01G269000 chr3B 93.694 1126 66 4 507 1630 664914862 664915984 0.000000e+00 1681.0
4 TraesCS4B01G269000 chr3B 96.552 58 2 0 68 125 173902444 173902501 1.980000e-16 97.1
5 TraesCS4B01G269000 chr7B 94.484 1124 57 4 511 1630 57465486 57464364 0.000000e+00 1727.0
6 TraesCS4B01G269000 chr7B 93.606 1126 61 5 508 1629 693314816 693313698 0.000000e+00 1670.0
7 TraesCS4B01G269000 chr7B 93.490 1106 58 3 527 1630 640347912 640346819 0.000000e+00 1631.0
8 TraesCS4B01G269000 chr7B 92.806 1126 64 11 509 1626 605768707 605769823 0.000000e+00 1615.0
9 TraesCS4B01G269000 chr6B 92.972 1124 68 8 509 1626 116744322 116745440 0.000000e+00 1628.0
10 TraesCS4B01G269000 chr5B 92.826 1129 72 6 508 1630 233355165 233356290 0.000000e+00 1628.0
11 TraesCS4B01G269000 chr4A 90.782 716 34 7 1700 2414 29019895 29019211 0.000000e+00 928.0
12 TraesCS4B01G269000 chr4A 93.309 269 15 2 246 512 29020157 29019890 6.260000e-106 394.0
13 TraesCS4B01G269000 chr4A 86.905 252 19 5 1 245 29020446 29020202 1.100000e-68 270.0
14 TraesCS4B01G269000 chr4A 91.781 73 5 1 68 140 67581723 67581794 1.530000e-17 100.0
15 TraesCS4B01G269000 chr4D 93.197 588 36 3 1828 2414 439689546 439688962 0.000000e+00 861.0
16 TraesCS4B01G269000 chr4D 90.873 252 12 4 1 245 439690251 439690004 6.430000e-86 327.0
17 TraesCS4B01G269000 chr1B 96.875 64 2 0 136 199 53319642 53319579 9.130000e-20 108.0
18 TraesCS4B01G269000 chr1B 94.828 58 3 0 68 125 672522075 672522132 9.190000e-15 91.6
19 TraesCS4B01G269000 chrUn 95.312 64 3 0 136 199 216515598 216515535 4.250000e-18 102.0
20 TraesCS4B01G269000 chrUn 95.312 64 3 0 136 199 286267785 286267848 4.250000e-18 102.0
21 TraesCS4B01G269000 chrUn 95.312 64 3 0 136 199 412653838 412653775 4.250000e-18 102.0
22 TraesCS4B01G269000 chr1D 95.312 64 3 0 136 199 254395107 254395044 4.250000e-18 102.0
23 TraesCS4B01G269000 chr1D 95.312 64 3 0 136 199 413924494 413924431 4.250000e-18 102.0
24 TraesCS4B01G269000 chr1D 82.301 113 17 3 2280 2390 485458264 485458153 7.100000e-16 95.3
25 TraesCS4B01G269000 chr6D 90.789 76 5 1 136 211 135461440 135461367 1.530000e-17 100.0
26 TraesCS4B01G269000 chr5D 87.805 82 9 1 68 149 79909640 79909560 7.100000e-16 95.3
27 TraesCS4B01G269000 chr5D 82.558 86 11 4 1624 1706 57213948 57213864 3.330000e-09 73.1
28 TraesCS4B01G269000 chr5A 89.474 76 7 1 68 143 246848408 246848334 7.100000e-16 95.3
29 TraesCS4B01G269000 chr7A 81.416 113 17 4 2281 2390 18944381 18944492 3.310000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G269000 chr4B 544033841 544036254 2413 True 4458.000000 4458 100.000 1 2414 1 chr4B.!!$R1 2413
1 TraesCS4B01G269000 chr4B 605504114 605505229 1115 True 1626.000000 1626 92.953 511 1629 1 chr4B.!!$R2 1118
2 TraesCS4B01G269000 chr3B 807437752 807438876 1124 True 1755.000000 1755 94.844 508 1630 1 chr3B.!!$R1 1122
3 TraesCS4B01G269000 chr3B 664914862 664915984 1122 False 1681.000000 1681 93.694 507 1630 1 chr3B.!!$F2 1123
4 TraesCS4B01G269000 chr7B 57464364 57465486 1122 True 1727.000000 1727 94.484 511 1630 1 chr7B.!!$R1 1119
5 TraesCS4B01G269000 chr7B 693313698 693314816 1118 True 1670.000000 1670 93.606 508 1629 1 chr7B.!!$R3 1121
6 TraesCS4B01G269000 chr7B 640346819 640347912 1093 True 1631.000000 1631 93.490 527 1630 1 chr7B.!!$R2 1103
7 TraesCS4B01G269000 chr7B 605768707 605769823 1116 False 1615.000000 1615 92.806 509 1626 1 chr7B.!!$F1 1117
8 TraesCS4B01G269000 chr6B 116744322 116745440 1118 False 1628.000000 1628 92.972 509 1626 1 chr6B.!!$F1 1117
9 TraesCS4B01G269000 chr5B 233355165 233356290 1125 False 1628.000000 1628 92.826 508 1630 1 chr5B.!!$F1 1122
10 TraesCS4B01G269000 chr4A 29019211 29020446 1235 True 530.666667 928 90.332 1 2414 3 chr4A.!!$R1 2413
11 TraesCS4B01G269000 chr4D 439688962 439690251 1289 True 594.000000 861 92.035 1 2414 2 chr4D.!!$R1 2413

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 238 0.179004 ACCGCCAATCACACCTTGAA 60.179 50.0 0.0 0.0 37.92 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 1974 0.034756 CCACGGTGGACTGATCAACA 59.965 55.0 22.77 0.0 40.96 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.174762 GGTTTGACGAGTGAGAAGGATAC 58.825 47.826 0.00 0.00 0.00 2.24
133 140 6.828785 AGTTGTCTTCCTTTGATGTTAGTGTT 59.171 34.615 0.00 0.00 0.00 3.32
148 155 3.388345 AGTGTTCGTTTCCTCTTCCTC 57.612 47.619 0.00 0.00 0.00 3.71
152 159 0.601558 TCGTTTCCTCTTCCTCGGTG 59.398 55.000 0.00 0.00 0.00 4.94
167 174 5.617252 TCCTCGGTGTCTGTTTTCTTATTT 58.383 37.500 0.00 0.00 0.00 1.40
199 206 4.699257 GCTTTTCATGGTTCTCATCTCTGT 59.301 41.667 0.00 0.00 32.92 3.41
201 208 6.541641 GCTTTTCATGGTTCTCATCTCTGTAT 59.458 38.462 0.00 0.00 32.92 2.29
204 211 9.605275 TTTTCATGGTTCTCATCTCTGTATAAG 57.395 33.333 0.00 0.00 32.92 1.73
230 237 0.888736 CACCGCCAATCACACCTTGA 60.889 55.000 0.00 0.00 39.11 3.02
231 238 0.179004 ACCGCCAATCACACCTTGAA 60.179 50.000 0.00 0.00 37.92 2.69
235 242 2.988493 CGCCAATCACACCTTGAAAATG 59.012 45.455 0.00 0.00 37.92 2.32
237 244 3.244181 GCCAATCACACCTTGAAAATGGT 60.244 43.478 0.00 0.00 38.16 3.55
240 247 5.466393 CCAATCACACCTTGAAAATGGTTTC 59.534 40.000 0.00 0.00 43.04 2.78
241 248 4.300189 TCACACCTTGAAAATGGTTTCG 57.700 40.909 0.00 0.00 45.26 3.46
242 249 2.794350 CACACCTTGAAAATGGTTTCGC 59.206 45.455 0.00 0.00 45.26 4.70
287 339 5.185454 TGGTACATCTGAAATTTCTCGCAT 58.815 37.500 18.64 5.17 0.00 4.73
304 356 1.070445 GCATCACCTCATCAGGGAGAG 59.930 57.143 0.00 0.00 45.53 3.20
359 411 3.481559 AGTGGGAGAAAGAGAGATCCA 57.518 47.619 0.00 0.00 33.24 3.41
371 423 1.601419 GAGATCCACGGAACCGGACA 61.601 60.000 9.46 0.87 44.69 4.02
392 444 0.250295 CGGGTTTTCTCTGGTGCTCA 60.250 55.000 0.00 0.00 0.00 4.26
1358 1527 5.133221 GTTGGACATATGGCTATCAACCTT 58.867 41.667 14.83 0.00 0.00 3.50
1401 1576 9.833917 GATGATAATGGTGATGATGATGATAGT 57.166 33.333 0.00 0.00 0.00 2.12
1410 1585 8.363390 GGTGATGATGATGATAGTGACTTAGAA 58.637 37.037 0.00 0.00 0.00 2.10
1562 1738 6.101150 TCCAATGCCTACATCCTAGTTTGTAT 59.899 38.462 3.31 0.00 34.62 2.29
1643 1823 3.118454 CGCGCCAAACCAGACGAT 61.118 61.111 0.00 0.00 0.00 3.73
1644 1824 2.480555 GCGCCAAACCAGACGATG 59.519 61.111 0.00 0.00 0.00 3.84
1652 1832 4.457496 CCAGACGATGGGTGCGCT 62.457 66.667 9.73 0.00 46.36 5.92
1653 1833 2.887568 CAGACGATGGGTGCGCTC 60.888 66.667 9.73 4.47 0.00 5.03
1654 1834 3.071206 AGACGATGGGTGCGCTCT 61.071 61.111 9.73 0.00 0.00 4.09
1655 1835 1.753078 AGACGATGGGTGCGCTCTA 60.753 57.895 9.73 0.00 0.00 2.43
1656 1836 1.141019 GACGATGGGTGCGCTCTAA 59.859 57.895 9.73 0.00 0.00 2.10
1657 1837 0.459585 GACGATGGGTGCGCTCTAAA 60.460 55.000 9.73 0.00 0.00 1.85
1658 1838 0.460284 ACGATGGGTGCGCTCTAAAG 60.460 55.000 9.73 0.12 0.00 1.85
1659 1839 1.766143 CGATGGGTGCGCTCTAAAGC 61.766 60.000 9.73 0.00 45.56 3.51
1660 1840 1.440145 GATGGGTGCGCTCTAAAGCC 61.440 60.000 9.73 7.55 46.34 4.35
1661 1841 2.046314 GGGTGCGCTCTAAAGCCA 60.046 61.111 9.73 0.00 46.34 4.75
1662 1842 1.452108 GGGTGCGCTCTAAAGCCAT 60.452 57.895 9.73 0.00 46.34 4.40
1663 1843 1.440145 GGGTGCGCTCTAAAGCCATC 61.440 60.000 9.73 0.00 46.34 3.51
1664 1844 0.462759 GGTGCGCTCTAAAGCCATCT 60.463 55.000 9.73 0.00 46.34 2.90
1665 1845 1.373570 GTGCGCTCTAAAGCCATCTT 58.626 50.000 9.73 0.00 46.34 2.40
1666 1846 1.740025 GTGCGCTCTAAAGCCATCTTT 59.260 47.619 9.73 0.00 46.34 2.52
1667 1847 2.162408 GTGCGCTCTAAAGCCATCTTTT 59.838 45.455 9.73 0.00 46.34 2.27
1668 1848 3.374058 GTGCGCTCTAAAGCCATCTTTTA 59.626 43.478 9.73 0.00 46.34 1.52
1669 1849 3.374058 TGCGCTCTAAAGCCATCTTTTAC 59.626 43.478 9.73 0.00 46.34 2.01
1670 1850 3.544244 GCGCTCTAAAGCCATCTTTTACG 60.544 47.826 0.00 0.00 46.34 3.18
1671 1851 3.544244 CGCTCTAAAGCCATCTTTTACGC 60.544 47.826 0.00 0.00 46.34 4.42
1672 1852 3.544244 GCTCTAAAGCCATCTTTTACGCG 60.544 47.826 3.53 3.53 43.10 6.01
1673 1853 2.350498 TCTAAAGCCATCTTTTACGCGC 59.650 45.455 5.73 0.00 42.21 6.86
1674 1854 0.179200 AAAGCCATCTTTTACGCGCG 60.179 50.000 30.96 30.96 39.36 6.86
1675 1855 1.977594 AAGCCATCTTTTACGCGCGG 61.978 55.000 35.22 16.11 0.00 6.46
1676 1856 2.022762 CCATCTTTTACGCGCGGC 59.977 61.111 35.22 0.00 0.00 6.53
1700 1880 2.892425 CGGCCGTTGGAGATGCTC 60.892 66.667 19.50 0.00 0.00 4.26
1701 1881 2.586792 GGCCGTTGGAGATGCTCT 59.413 61.111 0.00 0.00 0.00 4.09
1702 1882 1.078143 GGCCGTTGGAGATGCTCTT 60.078 57.895 0.00 0.00 0.00 2.85
1703 1883 0.178068 GGCCGTTGGAGATGCTCTTA 59.822 55.000 0.00 0.00 0.00 2.10
1704 1884 1.576356 GCCGTTGGAGATGCTCTTAG 58.424 55.000 0.00 0.00 0.00 2.18
1705 1885 1.808133 GCCGTTGGAGATGCTCTTAGG 60.808 57.143 0.00 0.00 0.00 2.69
1706 1886 1.757118 CCGTTGGAGATGCTCTTAGGA 59.243 52.381 0.00 0.00 0.00 2.94
1707 1887 2.366916 CCGTTGGAGATGCTCTTAGGAT 59.633 50.000 0.00 0.00 0.00 3.24
1708 1888 3.574396 CCGTTGGAGATGCTCTTAGGATA 59.426 47.826 0.00 0.00 0.00 2.59
1709 1889 4.221703 CCGTTGGAGATGCTCTTAGGATAT 59.778 45.833 0.00 0.00 0.00 1.63
1710 1890 5.419155 CCGTTGGAGATGCTCTTAGGATATA 59.581 44.000 0.00 0.00 0.00 0.86
1711 1891 6.326375 CGTTGGAGATGCTCTTAGGATATAC 58.674 44.000 0.00 0.00 0.00 1.47
1712 1892 6.151985 CGTTGGAGATGCTCTTAGGATATACT 59.848 42.308 0.00 0.00 0.00 2.12
1713 1893 7.319646 GTTGGAGATGCTCTTAGGATATACTG 58.680 42.308 0.00 0.00 0.00 2.74
1714 1894 6.556639 TGGAGATGCTCTTAGGATATACTGT 58.443 40.000 0.00 0.00 0.00 3.55
1715 1895 7.699878 TGGAGATGCTCTTAGGATATACTGTA 58.300 38.462 0.00 0.00 0.00 2.74
1716 1896 8.340002 TGGAGATGCTCTTAGGATATACTGTAT 58.660 37.037 5.53 5.53 0.00 2.29
1717 1897 8.629158 GGAGATGCTCTTAGGATATACTGTATG 58.371 40.741 10.51 0.00 0.00 2.39
1718 1898 9.402320 GAGATGCTCTTAGGATATACTGTATGA 57.598 37.037 10.51 0.00 0.00 2.15
1719 1899 9.184523 AGATGCTCTTAGGATATACTGTATGAC 57.815 37.037 10.51 4.44 0.00 3.06
1720 1900 8.885693 ATGCTCTTAGGATATACTGTATGACA 57.114 34.615 10.51 0.00 0.00 3.58
1721 1901 8.885693 TGCTCTTAGGATATACTGTATGACAT 57.114 34.615 10.51 4.89 0.00 3.06
1722 1902 9.975218 TGCTCTTAGGATATACTGTATGACATA 57.025 33.333 10.51 4.03 0.00 2.29
1728 1908 8.774546 AGGATATACTGTATGACATATCCAGG 57.225 38.462 20.59 0.00 46.37 4.45
1729 1909 8.347591 AGGATATACTGTATGACATATCCAGGT 58.652 37.037 20.59 5.63 46.37 4.00
1730 1910 8.417106 GGATATACTGTATGACATATCCAGGTG 58.583 40.741 16.40 0.00 44.62 4.00
1731 1911 4.342862 ACTGTATGACATATCCAGGTGC 57.657 45.455 14.36 0.00 0.00 5.01
1732 1912 3.969976 ACTGTATGACATATCCAGGTGCT 59.030 43.478 14.36 0.00 0.00 4.40
1733 1913 5.147767 ACTGTATGACATATCCAGGTGCTA 58.852 41.667 14.36 0.00 0.00 3.49
1734 1914 5.011125 ACTGTATGACATATCCAGGTGCTAC 59.989 44.000 14.36 0.00 0.00 3.58
1735 1915 4.283467 TGTATGACATATCCAGGTGCTACC 59.717 45.833 0.00 0.00 38.99 3.18
1736 1916 2.758130 TGACATATCCAGGTGCTACCA 58.242 47.619 7.86 0.00 41.95 3.25
1737 1917 2.434336 TGACATATCCAGGTGCTACCAC 59.566 50.000 7.86 0.00 41.95 4.16
1738 1918 2.434336 GACATATCCAGGTGCTACCACA 59.566 50.000 7.86 0.00 43.88 4.17
1739 1919 2.843730 ACATATCCAGGTGCTACCACAA 59.156 45.455 7.86 0.00 43.88 3.33
1740 1920 3.118261 ACATATCCAGGTGCTACCACAAG 60.118 47.826 7.86 0.00 43.88 3.16
1741 1921 1.362224 ATCCAGGTGCTACCACAAGT 58.638 50.000 7.86 0.00 43.88 3.16
1742 1922 2.018355 TCCAGGTGCTACCACAAGTA 57.982 50.000 7.86 0.00 43.88 2.24
1743 1923 2.331166 TCCAGGTGCTACCACAAGTAA 58.669 47.619 7.86 0.00 43.88 2.24
1744 1924 2.910319 TCCAGGTGCTACCACAAGTAAT 59.090 45.455 7.86 0.00 43.88 1.89
1745 1925 3.055385 TCCAGGTGCTACCACAAGTAATC 60.055 47.826 7.86 0.00 43.88 1.75
1746 1926 2.930040 CAGGTGCTACCACAAGTAATCG 59.070 50.000 7.86 0.00 43.88 3.34
1747 1927 2.093658 AGGTGCTACCACAAGTAATCGG 60.094 50.000 7.86 0.00 43.88 4.18
1748 1928 2.093869 GGTGCTACCACAAGTAATCGGA 60.094 50.000 1.01 0.00 43.88 4.55
1749 1929 3.592059 GTGCTACCACAAGTAATCGGAA 58.408 45.455 0.00 0.00 41.67 4.30
1750 1930 3.617263 GTGCTACCACAAGTAATCGGAAG 59.383 47.826 0.00 0.00 41.67 3.46
1751 1931 2.608090 GCTACCACAAGTAATCGGAAGC 59.392 50.000 0.00 0.00 0.00 3.86
1752 1932 2.851263 ACCACAAGTAATCGGAAGCA 57.149 45.000 0.00 0.00 0.00 3.91
1753 1933 2.699954 ACCACAAGTAATCGGAAGCAG 58.300 47.619 0.00 0.00 0.00 4.24
1754 1934 2.301870 ACCACAAGTAATCGGAAGCAGA 59.698 45.455 0.00 0.00 0.00 4.26
1755 1935 2.932614 CCACAAGTAATCGGAAGCAGAG 59.067 50.000 0.00 0.00 0.00 3.35
1756 1936 2.349886 CACAAGTAATCGGAAGCAGAGC 59.650 50.000 0.00 0.00 0.00 4.09
1757 1937 1.936547 CAAGTAATCGGAAGCAGAGCC 59.063 52.381 0.00 0.00 0.00 4.70
1758 1938 1.490574 AGTAATCGGAAGCAGAGCCT 58.509 50.000 0.00 0.00 0.00 4.58
1759 1939 1.834263 AGTAATCGGAAGCAGAGCCTT 59.166 47.619 0.00 0.00 0.00 4.35
1760 1940 2.237392 AGTAATCGGAAGCAGAGCCTTT 59.763 45.455 0.00 0.00 0.00 3.11
1761 1941 3.451178 AGTAATCGGAAGCAGAGCCTTTA 59.549 43.478 0.00 0.00 0.00 1.85
1762 1942 2.611225 ATCGGAAGCAGAGCCTTTAG 57.389 50.000 0.00 0.00 0.00 1.85
1763 1943 1.267121 TCGGAAGCAGAGCCTTTAGT 58.733 50.000 0.00 0.00 0.00 2.24
1764 1944 2.453521 TCGGAAGCAGAGCCTTTAGTA 58.546 47.619 0.00 0.00 0.00 1.82
1765 1945 2.165845 TCGGAAGCAGAGCCTTTAGTAC 59.834 50.000 0.00 0.00 0.00 2.73
1766 1946 2.541556 GGAAGCAGAGCCTTTAGTACG 58.458 52.381 0.00 0.00 0.00 3.67
1767 1947 2.094130 GGAAGCAGAGCCTTTAGTACGT 60.094 50.000 0.00 0.00 0.00 3.57
1768 1948 2.656560 AGCAGAGCCTTTAGTACGTG 57.343 50.000 0.00 0.00 0.00 4.49
1769 1949 1.000145 GCAGAGCCTTTAGTACGTGC 59.000 55.000 0.00 0.00 0.00 5.34
1770 1950 1.671850 GCAGAGCCTTTAGTACGTGCA 60.672 52.381 6.38 0.00 0.00 4.57
1771 1951 2.683968 CAGAGCCTTTAGTACGTGCAA 58.316 47.619 6.38 0.00 0.00 4.08
1772 1952 3.262420 CAGAGCCTTTAGTACGTGCAAT 58.738 45.455 6.38 0.00 0.00 3.56
1773 1953 3.684788 CAGAGCCTTTAGTACGTGCAATT 59.315 43.478 6.38 0.00 0.00 2.32
1774 1954 4.868171 CAGAGCCTTTAGTACGTGCAATTA 59.132 41.667 6.38 0.00 0.00 1.40
1775 1955 5.350365 CAGAGCCTTTAGTACGTGCAATTAA 59.650 40.000 6.38 0.00 0.00 1.40
1776 1956 6.037172 CAGAGCCTTTAGTACGTGCAATTAAT 59.963 38.462 6.38 0.00 0.00 1.40
1777 1957 7.223971 CAGAGCCTTTAGTACGTGCAATTAATA 59.776 37.037 6.38 0.00 0.00 0.98
1778 1958 7.931948 AGAGCCTTTAGTACGTGCAATTAATAT 59.068 33.333 6.38 0.00 0.00 1.28
1779 1959 7.861630 AGCCTTTAGTACGTGCAATTAATATG 58.138 34.615 6.38 0.00 0.00 1.78
1780 1960 7.497909 AGCCTTTAGTACGTGCAATTAATATGT 59.502 33.333 6.38 0.00 0.00 2.29
1781 1961 7.586300 GCCTTTAGTACGTGCAATTAATATGTG 59.414 37.037 6.38 0.00 0.00 3.21
1782 1962 7.586300 CCTTTAGTACGTGCAATTAATATGTGC 59.414 37.037 6.38 4.03 38.78 4.57
1783 1963 7.780008 TTAGTACGTGCAATTAATATGTGCT 57.220 32.000 6.38 8.04 39.09 4.40
1784 1964 6.048073 AGTACGTGCAATTAATATGTGCTG 57.952 37.500 6.38 6.91 39.09 4.41
1785 1965 3.694734 ACGTGCAATTAATATGTGCTGC 58.305 40.909 10.98 6.42 39.09 5.25
1786 1966 3.378112 ACGTGCAATTAATATGTGCTGCT 59.622 39.130 10.98 0.00 39.09 4.24
1787 1967 3.727227 CGTGCAATTAATATGTGCTGCTG 59.273 43.478 10.98 0.87 39.09 4.41
1788 1968 4.675510 GTGCAATTAATATGTGCTGCTGT 58.324 39.130 10.98 0.00 39.09 4.40
1789 1969 4.501559 GTGCAATTAATATGTGCTGCTGTG 59.498 41.667 10.98 0.00 39.09 3.66
1790 1970 4.158209 TGCAATTAATATGTGCTGCTGTGT 59.842 37.500 10.98 0.00 39.09 3.72
1791 1971 5.104374 GCAATTAATATGTGCTGCTGTGTT 58.896 37.500 0.00 0.00 35.36 3.32
1792 1972 5.230726 GCAATTAATATGTGCTGCTGTGTTC 59.769 40.000 0.00 0.00 35.36 3.18
1793 1973 6.324042 CAATTAATATGTGCTGCTGTGTTCA 58.676 36.000 0.00 0.00 0.00 3.18
1794 1974 6.704289 ATTAATATGTGCTGCTGTGTTCAT 57.296 33.333 0.00 0.00 0.00 2.57
1795 1975 4.365899 AATATGTGCTGCTGTGTTCATG 57.634 40.909 0.00 0.00 0.00 3.07
1796 1976 1.612676 ATGTGCTGCTGTGTTCATGT 58.387 45.000 0.00 0.00 0.00 3.21
1797 1977 1.391577 TGTGCTGCTGTGTTCATGTT 58.608 45.000 0.00 0.00 0.00 2.71
1798 1978 1.065851 TGTGCTGCTGTGTTCATGTTG 59.934 47.619 0.00 0.00 0.00 3.33
1799 1979 1.334556 GTGCTGCTGTGTTCATGTTGA 59.665 47.619 0.00 0.00 0.00 3.18
1800 1980 2.030540 GTGCTGCTGTGTTCATGTTGAT 60.031 45.455 0.00 0.00 0.00 2.57
1801 1981 2.227149 TGCTGCTGTGTTCATGTTGATC 59.773 45.455 0.00 0.00 0.00 2.92
1802 1982 2.227149 GCTGCTGTGTTCATGTTGATCA 59.773 45.455 0.00 0.00 0.00 2.92
1803 1983 3.669824 GCTGCTGTGTTCATGTTGATCAG 60.670 47.826 0.00 0.00 27.83 2.90
1804 1984 3.479489 TGCTGTGTTCATGTTGATCAGT 58.521 40.909 0.00 0.00 27.83 3.41
1805 1985 3.499537 TGCTGTGTTCATGTTGATCAGTC 59.500 43.478 0.00 0.00 27.83 3.51
1806 1986 3.120060 GCTGTGTTCATGTTGATCAGTCC 60.120 47.826 0.00 0.00 27.83 3.85
1807 1987 4.067192 CTGTGTTCATGTTGATCAGTCCA 58.933 43.478 0.00 0.00 27.83 4.02
1808 1988 3.814842 TGTGTTCATGTTGATCAGTCCAC 59.185 43.478 0.00 0.00 27.83 4.02
1809 1989 3.189287 GTGTTCATGTTGATCAGTCCACC 59.811 47.826 0.00 0.00 27.83 4.61
1810 1990 2.385013 TCATGTTGATCAGTCCACCG 57.615 50.000 0.00 0.00 0.00 4.94
1811 1991 1.623311 TCATGTTGATCAGTCCACCGT 59.377 47.619 0.00 0.00 0.00 4.83
1812 1992 1.733912 CATGTTGATCAGTCCACCGTG 59.266 52.381 0.00 0.00 0.00 4.94
1813 1993 0.034756 TGTTGATCAGTCCACCGTGG 59.965 55.000 11.73 11.73 39.43 4.94
1814 1994 1.003839 TTGATCAGTCCACCGTGGC 60.004 57.895 13.19 8.17 37.47 5.01
1815 1995 2.125106 GATCAGTCCACCGTGGCC 60.125 66.667 13.19 0.57 37.47 5.36
1816 1996 2.927856 ATCAGTCCACCGTGGCCA 60.928 61.111 13.19 0.00 37.47 5.36
1817 1997 2.257409 GATCAGTCCACCGTGGCCAT 62.257 60.000 9.72 1.71 37.47 4.40
1818 1998 2.257409 ATCAGTCCACCGTGGCCATC 62.257 60.000 9.72 1.29 37.47 3.51
1819 1999 2.927856 AGTCCACCGTGGCCATCA 60.928 61.111 9.72 0.00 37.47 3.07
1820 2000 2.436646 GTCCACCGTGGCCATCAG 60.437 66.667 9.72 2.90 37.47 2.90
1821 2001 2.606213 TCCACCGTGGCCATCAGA 60.606 61.111 9.72 0.00 37.47 3.27
1822 2002 2.124983 CCACCGTGGCCATCAGAG 60.125 66.667 9.72 0.00 0.00 3.35
1823 2003 2.659063 CCACCGTGGCCATCAGAGA 61.659 63.158 9.72 0.00 0.00 3.10
1824 2004 1.296392 CACCGTGGCCATCAGAGAA 59.704 57.895 9.72 0.00 0.00 2.87
1825 2005 1.021390 CACCGTGGCCATCAGAGAAC 61.021 60.000 9.72 0.00 0.00 3.01
1826 2006 1.296392 CCGTGGCCATCAGAGAACA 59.704 57.895 9.72 0.00 0.00 3.18
1827 2007 0.742281 CCGTGGCCATCAGAGAACAG 60.742 60.000 9.72 0.00 0.00 3.16
1828 2008 0.036952 CGTGGCCATCAGAGAACAGT 60.037 55.000 9.72 0.00 0.00 3.55
1829 2009 1.609061 CGTGGCCATCAGAGAACAGTT 60.609 52.381 9.72 0.00 0.00 3.16
1830 2010 2.508526 GTGGCCATCAGAGAACAGTTT 58.491 47.619 9.72 0.00 0.00 2.66
1831 2011 2.887152 GTGGCCATCAGAGAACAGTTTT 59.113 45.455 9.72 0.00 0.00 2.43
1832 2012 2.886523 TGGCCATCAGAGAACAGTTTTG 59.113 45.455 0.00 0.00 0.00 2.44
1833 2013 2.229784 GGCCATCAGAGAACAGTTTTGG 59.770 50.000 0.00 0.00 0.00 3.28
1834 2014 3.149196 GCCATCAGAGAACAGTTTTGGA 58.851 45.455 0.00 0.00 0.00 3.53
1835 2015 3.760684 GCCATCAGAGAACAGTTTTGGAT 59.239 43.478 0.00 0.00 0.00 3.41
1836 2016 4.142513 GCCATCAGAGAACAGTTTTGGATC 60.143 45.833 0.00 0.00 0.00 3.36
1837 2017 5.251764 CCATCAGAGAACAGTTTTGGATCT 58.748 41.667 0.00 0.00 0.00 2.75
1838 2018 5.709164 CCATCAGAGAACAGTTTTGGATCTT 59.291 40.000 0.00 0.00 0.00 2.40
1839 2019 6.208204 CCATCAGAGAACAGTTTTGGATCTTT 59.792 38.462 0.00 0.00 0.00 2.52
1840 2020 6.624352 TCAGAGAACAGTTTTGGATCTTTG 57.376 37.500 0.00 0.00 32.52 2.77
1841 2021 6.356556 TCAGAGAACAGTTTTGGATCTTTGA 58.643 36.000 0.00 0.00 35.30 2.69
1842 2022 7.000472 TCAGAGAACAGTTTTGGATCTTTGAT 59.000 34.615 0.00 0.00 34.04 2.57
1843 2023 8.156820 TCAGAGAACAGTTTTGGATCTTTGATA 58.843 33.333 0.00 0.00 34.04 2.15
1844 2024 8.449397 CAGAGAACAGTTTTGGATCTTTGATAG 58.551 37.037 0.00 0.00 32.76 2.08
1845 2025 8.160106 AGAGAACAGTTTTGGATCTTTGATAGT 58.840 33.333 0.00 0.00 0.00 2.12
1846 2026 8.103948 AGAACAGTTTTGGATCTTTGATAGTG 57.896 34.615 0.00 0.00 0.00 2.74
1847 2027 7.721399 AGAACAGTTTTGGATCTTTGATAGTGT 59.279 33.333 0.00 0.00 0.00 3.55
1848 2028 7.206981 ACAGTTTTGGATCTTTGATAGTGTG 57.793 36.000 0.00 0.00 0.00 3.82
1849 2029 6.088824 CAGTTTTGGATCTTTGATAGTGTGC 58.911 40.000 0.00 0.00 0.00 4.57
1850 2030 6.006449 AGTTTTGGATCTTTGATAGTGTGCT 58.994 36.000 0.00 0.00 0.00 4.40
1851 2031 6.491403 AGTTTTGGATCTTTGATAGTGTGCTT 59.509 34.615 0.00 0.00 0.00 3.91
1852 2032 5.885230 TTGGATCTTTGATAGTGTGCTTG 57.115 39.130 0.00 0.00 0.00 4.01
1853 2033 5.164620 TGGATCTTTGATAGTGTGCTTGA 57.835 39.130 0.00 0.00 0.00 3.02
1854 2034 5.181009 TGGATCTTTGATAGTGTGCTTGAG 58.819 41.667 0.00 0.00 0.00 3.02
1855 2035 4.034975 GGATCTTTGATAGTGTGCTTGAGC 59.965 45.833 0.00 0.00 42.50 4.26
1856 2036 2.995939 TCTTTGATAGTGTGCTTGAGCG 59.004 45.455 0.00 0.00 45.83 5.03
1857 2037 1.725641 TTGATAGTGTGCTTGAGCGG 58.274 50.000 0.00 0.00 45.83 5.52
1858 2038 0.894835 TGATAGTGTGCTTGAGCGGA 59.105 50.000 0.00 0.00 45.83 5.54
1859 2039 1.482182 TGATAGTGTGCTTGAGCGGAT 59.518 47.619 0.00 0.00 45.83 4.18
1860 2040 2.693074 TGATAGTGTGCTTGAGCGGATA 59.307 45.455 0.00 0.00 45.83 2.59
1861 2041 2.579207 TAGTGTGCTTGAGCGGATAC 57.421 50.000 0.00 0.00 45.83 2.24
1862 2042 0.898320 AGTGTGCTTGAGCGGATACT 59.102 50.000 0.00 0.00 45.83 2.12
1863 2043 2.100197 AGTGTGCTTGAGCGGATACTA 58.900 47.619 0.00 0.00 45.83 1.82
1864 2044 2.159226 AGTGTGCTTGAGCGGATACTAC 60.159 50.000 0.00 0.00 45.83 2.73
1865 2045 1.822371 TGTGCTTGAGCGGATACTACA 59.178 47.619 0.00 0.00 45.83 2.74
1866 2046 2.194271 GTGCTTGAGCGGATACTACAC 58.806 52.381 0.00 0.00 45.83 2.90
1867 2047 2.100197 TGCTTGAGCGGATACTACACT 58.900 47.619 0.00 0.00 45.83 3.55
1868 2048 2.159240 TGCTTGAGCGGATACTACACTG 60.159 50.000 0.00 0.00 45.83 3.66
1869 2049 2.464865 CTTGAGCGGATACTACACTGC 58.535 52.381 0.00 0.00 38.51 4.40
1871 2051 1.405463 TGAGCGGATACTACACTGCTG 59.595 52.381 0.00 0.00 46.75 4.41
1872 2052 1.405821 GAGCGGATACTACACTGCTGT 59.594 52.381 0.00 0.00 46.75 4.40
1873 2053 1.405821 AGCGGATACTACACTGCTGTC 59.594 52.381 0.00 0.00 45.35 3.51
1874 2054 1.405821 GCGGATACTACACTGCTGTCT 59.594 52.381 0.00 0.00 35.76 3.41
1875 2055 2.159226 GCGGATACTACACTGCTGTCTT 60.159 50.000 0.00 0.00 35.76 3.01
1876 2056 3.439293 CGGATACTACACTGCTGTCTTG 58.561 50.000 0.00 0.00 0.00 3.02
1877 2057 3.735208 CGGATACTACACTGCTGTCTTGG 60.735 52.174 0.00 0.00 0.00 3.61
1878 2058 3.447586 GGATACTACACTGCTGTCTTGGA 59.552 47.826 0.00 0.00 0.00 3.53
1879 2059 4.100189 GGATACTACACTGCTGTCTTGGAT 59.900 45.833 0.00 0.00 0.00 3.41
1880 2060 3.325293 ACTACACTGCTGTCTTGGATG 57.675 47.619 0.00 0.00 0.00 3.51
1881 2061 2.027745 ACTACACTGCTGTCTTGGATGG 60.028 50.000 0.00 0.00 0.00 3.51
1882 2062 0.607489 ACACTGCTGTCTTGGATGGC 60.607 55.000 0.00 0.00 0.00 4.40
1883 2063 0.322277 CACTGCTGTCTTGGATGGCT 60.322 55.000 0.00 0.00 0.00 4.75
1884 2064 0.322277 ACTGCTGTCTTGGATGGCTG 60.322 55.000 0.00 0.00 0.00 4.85
1885 2065 1.001764 TGCTGTCTTGGATGGCTGG 60.002 57.895 0.00 0.00 0.00 4.85
1886 2066 1.751927 GCTGTCTTGGATGGCTGGG 60.752 63.158 0.00 0.00 0.00 4.45
1887 2067 1.993653 CTGTCTTGGATGGCTGGGA 59.006 57.895 0.00 0.00 0.00 4.37
1888 2068 0.329261 CTGTCTTGGATGGCTGGGAA 59.671 55.000 0.00 0.00 0.00 3.97
1889 2069 0.776810 TGTCTTGGATGGCTGGGAAA 59.223 50.000 0.00 0.00 0.00 3.13
1890 2070 1.177401 GTCTTGGATGGCTGGGAAAC 58.823 55.000 0.00 0.00 0.00 2.78
1891 2071 0.322456 TCTTGGATGGCTGGGAAACG 60.322 55.000 0.00 0.00 0.00 3.60
1892 2072 0.609131 CTTGGATGGCTGGGAAACGT 60.609 55.000 0.00 0.00 0.00 3.99
1893 2073 0.693622 TTGGATGGCTGGGAAACGTA 59.306 50.000 0.00 0.00 0.00 3.57
1894 2074 0.916086 TGGATGGCTGGGAAACGTAT 59.084 50.000 0.00 0.00 0.00 3.06
1895 2075 2.120312 TGGATGGCTGGGAAACGTATA 58.880 47.619 0.00 0.00 0.00 1.47
1896 2076 2.104111 TGGATGGCTGGGAAACGTATAG 59.896 50.000 0.00 0.00 0.00 1.31
1897 2077 2.104281 GGATGGCTGGGAAACGTATAGT 59.896 50.000 0.00 0.00 0.00 2.12
1898 2078 3.433173 GGATGGCTGGGAAACGTATAGTT 60.433 47.826 0.00 0.00 46.76 2.24
1899 2079 2.980568 TGGCTGGGAAACGTATAGTTG 58.019 47.619 0.00 0.00 43.37 3.16
1900 2080 2.285977 GGCTGGGAAACGTATAGTTGG 58.714 52.381 0.00 0.00 43.37 3.77
1901 2081 1.669265 GCTGGGAAACGTATAGTTGGC 59.331 52.381 0.00 0.00 43.37 4.52
1902 2082 2.285977 CTGGGAAACGTATAGTTGGCC 58.714 52.381 0.00 0.00 43.37 5.36
1903 2083 1.629353 TGGGAAACGTATAGTTGGCCA 59.371 47.619 0.00 0.00 43.37 5.36
1904 2084 2.240160 TGGGAAACGTATAGTTGGCCAT 59.760 45.455 6.09 0.00 43.37 4.40
1905 2085 2.876550 GGGAAACGTATAGTTGGCCATC 59.123 50.000 6.09 5.81 43.37 3.51
1906 2086 3.433173 GGGAAACGTATAGTTGGCCATCT 60.433 47.826 19.97 19.97 43.37 2.90
1907 2087 3.808174 GGAAACGTATAGTTGGCCATCTC 59.192 47.826 19.70 7.26 43.37 2.75
1908 2088 4.439057 GAAACGTATAGTTGGCCATCTCA 58.561 43.478 19.70 6.76 43.37 3.27
1909 2089 3.454371 ACGTATAGTTGGCCATCTCAC 57.546 47.619 19.70 16.52 0.00 3.51
1910 2090 2.223735 ACGTATAGTTGGCCATCTCACG 60.224 50.000 30.50 30.50 0.00 4.35
1911 2091 2.135933 GTATAGTTGGCCATCTCACGC 58.864 52.381 19.70 5.84 0.00 5.34
1912 2092 0.833287 ATAGTTGGCCATCTCACGCT 59.167 50.000 19.70 5.86 0.00 5.07
1913 2093 0.175760 TAGTTGGCCATCTCACGCTC 59.824 55.000 19.70 0.00 0.00 5.03
1914 2094 1.375908 GTTGGCCATCTCACGCTCA 60.376 57.895 6.09 0.00 0.00 4.26
1915 2095 1.078918 TTGGCCATCTCACGCTCAG 60.079 57.895 6.09 0.00 0.00 3.35
1916 2096 2.202987 GGCCATCTCACGCTCAGG 60.203 66.667 0.00 0.00 0.00 3.86
1917 2097 2.581354 GCCATCTCACGCTCAGGT 59.419 61.111 0.00 0.00 0.00 4.00
1918 2098 1.078848 GCCATCTCACGCTCAGGTT 60.079 57.895 0.00 0.00 0.00 3.50
1919 2099 1.364626 GCCATCTCACGCTCAGGTTG 61.365 60.000 0.00 0.00 0.00 3.77
1920 2100 1.364626 CCATCTCACGCTCAGGTTGC 61.365 60.000 0.00 0.00 0.00 4.17
1921 2101 0.671472 CATCTCACGCTCAGGTTGCA 60.671 55.000 0.00 0.00 0.00 4.08
1922 2102 0.390866 ATCTCACGCTCAGGTTGCAG 60.391 55.000 0.00 0.00 0.00 4.41
1923 2103 1.301244 CTCACGCTCAGGTTGCAGT 60.301 57.895 0.00 0.00 0.00 4.40
1924 2104 0.038251 CTCACGCTCAGGTTGCAGTA 60.038 55.000 0.00 0.00 0.00 2.74
1925 2105 0.391228 TCACGCTCAGGTTGCAGTAA 59.609 50.000 0.00 0.00 0.00 2.24
1926 2106 1.001974 TCACGCTCAGGTTGCAGTAAT 59.998 47.619 0.00 0.00 0.00 1.89
1927 2107 1.806542 CACGCTCAGGTTGCAGTAATT 59.193 47.619 0.00 0.00 0.00 1.40
1928 2108 1.806542 ACGCTCAGGTTGCAGTAATTG 59.193 47.619 0.00 0.00 0.00 2.32
1929 2109 1.131126 CGCTCAGGTTGCAGTAATTGG 59.869 52.381 0.00 0.00 0.00 3.16
1930 2110 2.436417 GCTCAGGTTGCAGTAATTGGA 58.564 47.619 0.00 0.00 0.00 3.53
1931 2111 2.819608 GCTCAGGTTGCAGTAATTGGAA 59.180 45.455 0.00 0.00 34.45 3.53
1932 2112 3.119708 GCTCAGGTTGCAGTAATTGGAAG 60.120 47.826 0.00 0.00 37.84 3.46
1933 2113 4.074970 CTCAGGTTGCAGTAATTGGAAGT 58.925 43.478 0.00 0.00 37.84 3.01
1934 2114 3.820467 TCAGGTTGCAGTAATTGGAAGTG 59.180 43.478 0.00 0.00 37.84 3.16
1935 2115 2.558359 AGGTTGCAGTAATTGGAAGTGC 59.442 45.455 0.37 0.37 42.47 4.40
1936 2116 2.584791 GTTGCAGTAATTGGAAGTGCG 58.415 47.619 2.84 0.00 44.58 5.34
1945 2125 1.781025 TTGGAAGTGCGCCGTGAAAG 61.781 55.000 4.18 0.00 0.00 2.62
1947 2127 2.591715 AAGTGCGCCGTGAAAGCT 60.592 55.556 4.18 0.00 0.00 3.74
1957 2137 2.742053 GCCGTGAAAGCTAAGACAATGA 59.258 45.455 0.00 0.00 0.00 2.57
1975 2155 8.836413 AGACAATGATTTTTCTAAAACACTCGA 58.164 29.630 0.00 0.00 30.19 4.04
2253 2437 3.979948 TGAATATGCCATGCCAAAATCG 58.020 40.909 0.00 0.00 0.00 3.34
2267 2451 4.035675 GCCAAAATCGGAGACTGAATTAGG 59.964 45.833 0.00 0.00 42.51 2.69
2314 2500 4.382254 GCTCCAATGGCAAGATCAAAATGA 60.382 41.667 0.00 0.00 0.00 2.57
2341 2527 4.391405 ACTGGAGTGGCAAAAGAAAAAG 57.609 40.909 0.00 0.00 0.00 2.27
2390 2576 3.117963 TCCCTACTCCGTTTGGTCAAAAA 60.118 43.478 0.00 0.00 36.30 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.510776 CTCCGCCTACTACTCCTACG 58.489 60.000 0.00 0.00 0.00 3.51
133 140 0.601558 CACCGAGGAAGAGGAAACGA 59.398 55.000 0.00 0.00 0.00 3.85
148 155 6.539649 TCTCAAATAAGAAAACAGACACCG 57.460 37.500 0.00 0.00 0.00 4.94
152 159 8.510505 AGCAAGATCTCAAATAAGAAAACAGAC 58.489 33.333 0.00 0.00 0.00 3.51
167 174 5.319453 AGAACCATGAAAAGCAAGATCTCA 58.681 37.500 0.00 0.00 0.00 3.27
218 225 5.288804 CGAAACCATTTTCAAGGTGTGATT 58.711 37.500 0.00 0.00 41.22 2.57
219 226 4.795962 GCGAAACCATTTTCAAGGTGTGAT 60.796 41.667 0.00 0.00 41.22 3.06
230 237 2.990066 TTGTTGGGCGAAACCATTTT 57.010 40.000 0.00 0.00 40.91 1.82
231 238 2.990066 TTTGTTGGGCGAAACCATTT 57.010 40.000 0.00 0.00 40.91 2.32
235 242 0.033366 AGCATTTGTTGGGCGAAACC 59.967 50.000 0.00 0.00 37.93 3.27
237 244 1.686052 AGAAGCATTTGTTGGGCGAAA 59.314 42.857 0.00 0.00 0.00 3.46
240 247 2.083774 TCTAGAAGCATTTGTTGGGCG 58.916 47.619 0.00 0.00 0.00 6.13
241 248 4.519540 TTTCTAGAAGCATTTGTTGGGC 57.480 40.909 5.12 0.00 0.00 5.36
242 249 5.870978 CCAATTTCTAGAAGCATTTGTTGGG 59.129 40.000 5.12 0.00 31.22 4.12
287 339 2.928036 TTCTCTCCCTGATGAGGTGA 57.072 50.000 0.00 0.00 37.73 4.02
321 373 5.669904 TCCCACTATCACATTCCTAATTGGA 59.330 40.000 0.00 0.00 44.51 3.53
335 387 5.144100 GGATCTCTCTTTCTCCCACTATCA 58.856 45.833 0.00 0.00 0.00 2.15
371 423 0.693049 AGCACCAGAGAAAACCCGAT 59.307 50.000 0.00 0.00 0.00 4.18
383 435 1.676967 GCCCCTCTTTGAGCACCAG 60.677 63.158 0.00 0.00 0.00 4.00
392 444 1.299976 GACGATGGTGCCCCTCTTT 59.700 57.895 0.00 0.00 0.00 2.52
492 546 6.406692 TGCTCTAAGATCGGCTAAAGTAAT 57.593 37.500 0.00 0.00 0.00 1.89
692 851 0.724549 CCGCACGCTGCACTTTATAA 59.275 50.000 0.00 0.00 45.36 0.98
1276 1435 0.737715 GCTGCAACGAGATCGGTCTT 60.738 55.000 0.00 0.00 44.95 3.01
1324 1493 5.304778 CCATATGTCCAACCAACGATCATA 58.695 41.667 1.24 0.00 0.00 2.15
1626 1806 3.118454 ATCGTCTGGTTTGGCGCG 61.118 61.111 0.00 0.00 0.00 6.86
1630 1810 1.586154 GCACCCATCGTCTGGTTTGG 61.586 60.000 6.14 0.00 44.30 3.28
1631 1811 1.875963 GCACCCATCGTCTGGTTTG 59.124 57.895 6.14 4.43 44.30 2.93
1632 1812 1.671054 CGCACCCATCGTCTGGTTT 60.671 57.895 6.14 0.00 44.30 3.27
1633 1813 2.047274 CGCACCCATCGTCTGGTT 60.047 61.111 6.14 0.00 44.30 3.67
1634 1814 4.760047 GCGCACCCATCGTCTGGT 62.760 66.667 0.30 0.00 44.30 4.00
1635 1815 4.457496 AGCGCACCCATCGTCTGG 62.457 66.667 11.47 0.47 45.51 3.86
1636 1816 2.004808 TAGAGCGCACCCATCGTCTG 62.005 60.000 11.47 0.00 0.00 3.51
1637 1817 1.320344 TTAGAGCGCACCCATCGTCT 61.320 55.000 11.47 3.09 0.00 4.18
1638 1818 0.459585 TTTAGAGCGCACCCATCGTC 60.460 55.000 11.47 0.00 0.00 4.20
1639 1819 0.460284 CTTTAGAGCGCACCCATCGT 60.460 55.000 11.47 0.00 0.00 3.73
1640 1820 1.766143 GCTTTAGAGCGCACCCATCG 61.766 60.000 11.47 0.00 39.48 3.84
1641 1821 2.017752 GCTTTAGAGCGCACCCATC 58.982 57.895 11.47 0.00 39.48 3.51
1642 1822 4.225497 GCTTTAGAGCGCACCCAT 57.775 55.556 11.47 0.00 39.48 4.00
1650 1830 3.544244 CGCGTAAAAGATGGCTTTAGAGC 60.544 47.826 0.00 0.00 43.32 4.09
1651 1831 3.544244 GCGCGTAAAAGATGGCTTTAGAG 60.544 47.826 8.43 0.00 43.32 2.43
1652 1832 2.350498 GCGCGTAAAAGATGGCTTTAGA 59.650 45.455 8.43 0.00 43.32 2.10
1653 1833 2.705154 GCGCGTAAAAGATGGCTTTAG 58.295 47.619 8.43 0.00 43.32 1.85
1654 1834 1.061421 CGCGCGTAAAAGATGGCTTTA 59.939 47.619 24.19 0.00 43.32 1.85
1655 1835 0.179200 CGCGCGTAAAAGATGGCTTT 60.179 50.000 24.19 0.00 45.95 3.51
1656 1836 1.423845 CGCGCGTAAAAGATGGCTT 59.576 52.632 24.19 0.00 35.37 4.35
1657 1837 2.461110 CCGCGCGTAAAAGATGGCT 61.461 57.895 29.95 0.00 0.00 4.75
1658 1838 2.022762 CCGCGCGTAAAAGATGGC 59.977 61.111 29.95 0.00 0.00 4.40
1659 1839 2.022762 GCCGCGCGTAAAAGATGG 59.977 61.111 29.95 10.92 0.00 3.51
1683 1863 2.892425 GAGCATCTCCAACGGCCG 60.892 66.667 26.86 26.86 0.00 6.13
1694 1874 8.961634 TGTCATACAGTATATCCTAAGAGCATC 58.038 37.037 0.00 0.00 0.00 3.91
1695 1875 8.885693 TGTCATACAGTATATCCTAAGAGCAT 57.114 34.615 0.00 0.00 0.00 3.79
1696 1876 8.885693 ATGTCATACAGTATATCCTAAGAGCA 57.114 34.615 0.00 0.00 0.00 4.26
1702 1882 9.868160 CCTGGATATGTCATACAGTATATCCTA 57.132 37.037 17.95 8.06 46.03 2.94
1703 1883 8.347591 ACCTGGATATGTCATACAGTATATCCT 58.652 37.037 17.95 1.86 46.03 3.24
1704 1884 8.417106 CACCTGGATATGTCATACAGTATATCC 58.583 40.741 0.00 12.82 46.04 2.59
1705 1885 7.923344 GCACCTGGATATGTCATACAGTATATC 59.077 40.741 0.00 0.00 33.72 1.63
1706 1886 7.621285 AGCACCTGGATATGTCATACAGTATAT 59.379 37.037 0.00 0.00 0.00 0.86
1707 1887 6.954102 AGCACCTGGATATGTCATACAGTATA 59.046 38.462 0.00 0.00 0.00 1.47
1708 1888 5.782331 AGCACCTGGATATGTCATACAGTAT 59.218 40.000 0.00 0.00 0.00 2.12
1709 1889 5.147767 AGCACCTGGATATGTCATACAGTA 58.852 41.667 0.00 0.00 0.00 2.74
1710 1890 3.969976 AGCACCTGGATATGTCATACAGT 59.030 43.478 0.00 0.00 0.00 3.55
1711 1891 4.613925 AGCACCTGGATATGTCATACAG 57.386 45.455 0.00 0.00 0.00 2.74
1712 1892 4.283467 GGTAGCACCTGGATATGTCATACA 59.717 45.833 0.00 0.00 34.73 2.29
1713 1893 4.283467 TGGTAGCACCTGGATATGTCATAC 59.717 45.833 0.00 0.00 39.58 2.39
1714 1894 4.283467 GTGGTAGCACCTGGATATGTCATA 59.717 45.833 14.20 0.00 39.58 2.15
1715 1895 3.071602 GTGGTAGCACCTGGATATGTCAT 59.928 47.826 14.20 0.00 39.58 3.06
1716 1896 2.434336 GTGGTAGCACCTGGATATGTCA 59.566 50.000 14.20 0.00 39.58 3.58
1717 1897 2.434336 TGTGGTAGCACCTGGATATGTC 59.566 50.000 21.65 0.00 39.58 3.06
1718 1898 2.477245 TGTGGTAGCACCTGGATATGT 58.523 47.619 21.65 0.00 39.58 2.29
1719 1899 3.118261 ACTTGTGGTAGCACCTGGATATG 60.118 47.826 21.65 7.26 39.58 1.78
1720 1900 3.115390 ACTTGTGGTAGCACCTGGATAT 58.885 45.455 21.65 0.00 39.58 1.63
1721 1901 2.546899 ACTTGTGGTAGCACCTGGATA 58.453 47.619 21.65 0.00 39.58 2.59
1722 1902 1.362224 ACTTGTGGTAGCACCTGGAT 58.638 50.000 21.65 0.99 39.58 3.41
1723 1903 2.018355 TACTTGTGGTAGCACCTGGA 57.982 50.000 21.65 8.72 39.58 3.86
1724 1904 2.851263 TTACTTGTGGTAGCACCTGG 57.149 50.000 21.65 13.51 39.58 4.45
1725 1905 2.930040 CGATTACTTGTGGTAGCACCTG 59.070 50.000 21.65 15.85 39.58 4.00
1726 1906 2.093658 CCGATTACTTGTGGTAGCACCT 60.094 50.000 21.65 7.32 39.58 4.00
1727 1907 2.093869 TCCGATTACTTGTGGTAGCACC 60.094 50.000 21.65 5.20 39.22 5.01
1728 1908 3.241067 TCCGATTACTTGTGGTAGCAC 57.759 47.619 18.10 18.10 0.00 4.40
1729 1909 3.857052 CTTCCGATTACTTGTGGTAGCA 58.143 45.455 0.00 0.00 0.00 3.49
1730 1910 2.608090 GCTTCCGATTACTTGTGGTAGC 59.392 50.000 0.00 0.00 37.66 3.58
1731 1911 3.857052 TGCTTCCGATTACTTGTGGTAG 58.143 45.455 0.00 0.00 0.00 3.18
1732 1912 3.512329 TCTGCTTCCGATTACTTGTGGTA 59.488 43.478 0.00 0.00 0.00 3.25
1733 1913 2.301870 TCTGCTTCCGATTACTTGTGGT 59.698 45.455 0.00 0.00 0.00 4.16
1734 1914 2.932614 CTCTGCTTCCGATTACTTGTGG 59.067 50.000 0.00 0.00 0.00 4.17
1735 1915 2.349886 GCTCTGCTTCCGATTACTTGTG 59.650 50.000 0.00 0.00 0.00 3.33
1736 1916 2.622436 GCTCTGCTTCCGATTACTTGT 58.378 47.619 0.00 0.00 0.00 3.16
1737 1917 1.936547 GGCTCTGCTTCCGATTACTTG 59.063 52.381 0.00 0.00 0.00 3.16
1738 1918 1.834263 AGGCTCTGCTTCCGATTACTT 59.166 47.619 0.00 0.00 0.00 2.24
1739 1919 1.490574 AGGCTCTGCTTCCGATTACT 58.509 50.000 0.00 0.00 0.00 2.24
1740 1920 2.317530 AAGGCTCTGCTTCCGATTAC 57.682 50.000 0.00 0.00 0.00 1.89
1741 1921 3.451178 ACTAAAGGCTCTGCTTCCGATTA 59.549 43.478 0.00 0.00 0.00 1.75
1742 1922 2.237392 ACTAAAGGCTCTGCTTCCGATT 59.763 45.455 0.00 0.00 0.00 3.34
1743 1923 1.834263 ACTAAAGGCTCTGCTTCCGAT 59.166 47.619 0.00 0.00 0.00 4.18
1744 1924 1.267121 ACTAAAGGCTCTGCTTCCGA 58.733 50.000 0.00 0.00 0.00 4.55
1745 1925 2.541556 GTACTAAAGGCTCTGCTTCCG 58.458 52.381 0.00 0.00 0.00 4.30
1746 1926 2.094130 ACGTACTAAAGGCTCTGCTTCC 60.094 50.000 0.00 0.00 0.00 3.46
1747 1927 2.924290 CACGTACTAAAGGCTCTGCTTC 59.076 50.000 0.00 0.00 0.00 3.86
1748 1928 2.931320 GCACGTACTAAAGGCTCTGCTT 60.931 50.000 0.00 0.00 0.00 3.91
1749 1929 1.404315 GCACGTACTAAAGGCTCTGCT 60.404 52.381 0.00 0.00 0.00 4.24
1750 1930 1.000145 GCACGTACTAAAGGCTCTGC 59.000 55.000 0.00 0.00 0.00 4.26
1751 1931 2.363788 TGCACGTACTAAAGGCTCTG 57.636 50.000 0.00 0.00 0.00 3.35
1752 1932 3.611766 ATTGCACGTACTAAAGGCTCT 57.388 42.857 0.00 0.00 0.00 4.09
1753 1933 5.789710 TTAATTGCACGTACTAAAGGCTC 57.210 39.130 0.00 0.00 0.00 4.70
1754 1934 7.497909 ACATATTAATTGCACGTACTAAAGGCT 59.502 33.333 0.00 0.00 0.00 4.58
1755 1935 7.586300 CACATATTAATTGCACGTACTAAAGGC 59.414 37.037 0.00 0.00 0.00 4.35
1756 1936 7.586300 GCACATATTAATTGCACGTACTAAAGG 59.414 37.037 5.85 0.00 36.22 3.11
1757 1937 8.335356 AGCACATATTAATTGCACGTACTAAAG 58.665 33.333 12.02 0.00 38.81 1.85
1758 1938 8.119845 CAGCACATATTAATTGCACGTACTAAA 58.880 33.333 12.02 0.00 38.81 1.85
1759 1939 7.626446 CAGCACATATTAATTGCACGTACTAA 58.374 34.615 12.02 0.00 38.81 2.24
1760 1940 6.292649 GCAGCACATATTAATTGCACGTACTA 60.293 38.462 12.02 0.00 38.81 1.82
1761 1941 5.504010 GCAGCACATATTAATTGCACGTACT 60.504 40.000 12.02 0.00 38.81 2.73
1762 1942 4.670621 GCAGCACATATTAATTGCACGTAC 59.329 41.667 12.02 0.00 38.81 3.67
1763 1943 4.574421 AGCAGCACATATTAATTGCACGTA 59.426 37.500 12.02 0.00 38.81 3.57
1764 1944 3.378112 AGCAGCACATATTAATTGCACGT 59.622 39.130 12.02 0.00 38.81 4.49
1765 1945 3.727227 CAGCAGCACATATTAATTGCACG 59.273 43.478 12.02 5.03 38.81 5.34
1766 1946 4.501559 CACAGCAGCACATATTAATTGCAC 59.498 41.667 12.02 4.96 38.81 4.57
1767 1947 4.158209 ACACAGCAGCACATATTAATTGCA 59.842 37.500 12.02 0.00 38.81 4.08
1768 1948 4.675510 ACACAGCAGCACATATTAATTGC 58.324 39.130 2.91 2.91 36.45 3.56
1769 1949 6.324042 TGAACACAGCAGCACATATTAATTG 58.676 36.000 0.00 0.00 0.00 2.32
1770 1950 6.513806 TGAACACAGCAGCACATATTAATT 57.486 33.333 0.00 0.00 0.00 1.40
1771 1951 6.095860 ACATGAACACAGCAGCACATATTAAT 59.904 34.615 0.00 0.00 0.00 1.40
1772 1952 5.415389 ACATGAACACAGCAGCACATATTAA 59.585 36.000 0.00 0.00 0.00 1.40
1773 1953 4.943093 ACATGAACACAGCAGCACATATTA 59.057 37.500 0.00 0.00 0.00 0.98
1774 1954 3.760151 ACATGAACACAGCAGCACATATT 59.240 39.130 0.00 0.00 0.00 1.28
1775 1955 3.349927 ACATGAACACAGCAGCACATAT 58.650 40.909 0.00 0.00 0.00 1.78
1776 1956 2.781923 ACATGAACACAGCAGCACATA 58.218 42.857 0.00 0.00 0.00 2.29
1777 1957 1.612676 ACATGAACACAGCAGCACAT 58.387 45.000 0.00 0.00 0.00 3.21
1778 1958 1.065851 CAACATGAACACAGCAGCACA 59.934 47.619 0.00 0.00 0.00 4.57
1779 1959 1.334556 TCAACATGAACACAGCAGCAC 59.665 47.619 0.00 0.00 0.00 4.40
1780 1960 1.677942 TCAACATGAACACAGCAGCA 58.322 45.000 0.00 0.00 0.00 4.41
1781 1961 2.227149 TGATCAACATGAACACAGCAGC 59.773 45.455 0.00 0.00 0.00 5.25
1782 1962 3.501062 ACTGATCAACATGAACACAGCAG 59.499 43.478 0.00 0.00 33.15 4.24
1783 1963 3.479489 ACTGATCAACATGAACACAGCA 58.521 40.909 0.00 0.00 33.15 4.41
1784 1964 3.120060 GGACTGATCAACATGAACACAGC 60.120 47.826 0.00 0.05 33.15 4.40
1785 1965 4.067192 TGGACTGATCAACATGAACACAG 58.933 43.478 0.00 5.05 34.69 3.66
1786 1966 3.814842 GTGGACTGATCAACATGAACACA 59.185 43.478 0.00 0.00 0.00 3.72
1787 1967 3.189287 GGTGGACTGATCAACATGAACAC 59.811 47.826 0.00 0.00 29.07 3.32
1788 1968 3.411446 GGTGGACTGATCAACATGAACA 58.589 45.455 0.00 0.00 29.07 3.18
1789 1969 2.416547 CGGTGGACTGATCAACATGAAC 59.583 50.000 0.00 0.00 29.07 3.18
1790 1970 2.038426 ACGGTGGACTGATCAACATGAA 59.962 45.455 0.00 0.00 29.07 2.57
1791 1971 1.623311 ACGGTGGACTGATCAACATGA 59.377 47.619 0.00 0.00 29.07 3.07
1792 1972 1.733912 CACGGTGGACTGATCAACATG 59.266 52.381 0.00 0.00 29.07 3.21
1793 1973 1.339055 CCACGGTGGACTGATCAACAT 60.339 52.381 22.77 0.00 40.96 2.71
1794 1974 0.034756 CCACGGTGGACTGATCAACA 59.965 55.000 22.77 0.00 40.96 3.33
1795 1975 1.298859 GCCACGGTGGACTGATCAAC 61.299 60.000 30.65 5.63 40.96 3.18
1796 1976 1.003839 GCCACGGTGGACTGATCAA 60.004 57.895 30.65 0.00 40.96 2.57
1797 1977 2.662596 GCCACGGTGGACTGATCA 59.337 61.111 30.65 0.00 40.96 2.92
1798 1978 2.125106 GGCCACGGTGGACTGATC 60.125 66.667 30.65 11.28 44.12 2.92
1804 1984 2.606213 TCTGATGGCCACGGTGGA 60.606 61.111 30.65 11.33 40.96 4.02
1805 1985 2.124983 CTCTGATGGCCACGGTGG 60.125 66.667 22.87 22.87 41.55 4.61
1806 1986 1.021390 GTTCTCTGATGGCCACGGTG 61.021 60.000 8.16 8.66 0.00 4.94
1807 1987 1.296715 GTTCTCTGATGGCCACGGT 59.703 57.895 8.16 0.00 0.00 4.83
1808 1988 0.742281 CTGTTCTCTGATGGCCACGG 60.742 60.000 8.16 7.79 0.00 4.94
1809 1989 0.036952 ACTGTTCTCTGATGGCCACG 60.037 55.000 8.16 0.00 0.00 4.94
1810 1990 2.191128 AACTGTTCTCTGATGGCCAC 57.809 50.000 8.16 2.36 0.00 5.01
1811 1991 2.886523 CAAAACTGTTCTCTGATGGCCA 59.113 45.455 8.56 8.56 0.00 5.36
1812 1992 2.229784 CCAAAACTGTTCTCTGATGGCC 59.770 50.000 0.00 0.00 0.00 5.36
1813 1993 3.149196 TCCAAAACTGTTCTCTGATGGC 58.851 45.455 0.00 0.00 0.00 4.40
1814 1994 5.251764 AGATCCAAAACTGTTCTCTGATGG 58.748 41.667 0.00 0.00 0.00 3.51
1815 1995 6.814506 AAGATCCAAAACTGTTCTCTGATG 57.185 37.500 0.00 0.00 0.00 3.07
1816 1996 7.000472 TCAAAGATCCAAAACTGTTCTCTGAT 59.000 34.615 0.00 0.00 0.00 2.90
1817 1997 6.356556 TCAAAGATCCAAAACTGTTCTCTGA 58.643 36.000 0.00 0.00 0.00 3.27
1818 1998 6.624352 TCAAAGATCCAAAACTGTTCTCTG 57.376 37.500 0.00 0.00 0.00 3.35
1819 1999 8.160106 ACTATCAAAGATCCAAAACTGTTCTCT 58.840 33.333 0.00 0.00 0.00 3.10
1820 2000 8.233190 CACTATCAAAGATCCAAAACTGTTCTC 58.767 37.037 0.00 0.00 0.00 2.87
1821 2001 7.721399 ACACTATCAAAGATCCAAAACTGTTCT 59.279 33.333 0.00 0.00 0.00 3.01
1822 2002 7.805071 CACACTATCAAAGATCCAAAACTGTTC 59.195 37.037 0.00 0.00 0.00 3.18
1823 2003 7.651808 CACACTATCAAAGATCCAAAACTGTT 58.348 34.615 0.00 0.00 0.00 3.16
1824 2004 6.294176 GCACACTATCAAAGATCCAAAACTGT 60.294 38.462 0.00 0.00 0.00 3.55
1825 2005 6.072286 AGCACACTATCAAAGATCCAAAACTG 60.072 38.462 0.00 0.00 0.00 3.16
1826 2006 6.006449 AGCACACTATCAAAGATCCAAAACT 58.994 36.000 0.00 0.00 0.00 2.66
1827 2007 6.259550 AGCACACTATCAAAGATCCAAAAC 57.740 37.500 0.00 0.00 0.00 2.43
1828 2008 6.489700 TCAAGCACACTATCAAAGATCCAAAA 59.510 34.615 0.00 0.00 0.00 2.44
1829 2009 6.003326 TCAAGCACACTATCAAAGATCCAAA 58.997 36.000 0.00 0.00 0.00 3.28
1830 2010 5.559770 TCAAGCACACTATCAAAGATCCAA 58.440 37.500 0.00 0.00 0.00 3.53
1831 2011 5.164620 TCAAGCACACTATCAAAGATCCA 57.835 39.130 0.00 0.00 0.00 3.41
1832 2012 4.034975 GCTCAAGCACACTATCAAAGATCC 59.965 45.833 0.00 0.00 41.59 3.36
1833 2013 4.260132 CGCTCAAGCACACTATCAAAGATC 60.260 45.833 2.50 0.00 42.21 2.75
1834 2014 3.620374 CGCTCAAGCACACTATCAAAGAT 59.380 43.478 2.50 0.00 42.21 2.40
1835 2015 2.995939 CGCTCAAGCACACTATCAAAGA 59.004 45.455 2.50 0.00 42.21 2.52
1836 2016 2.094894 CCGCTCAAGCACACTATCAAAG 59.905 50.000 2.50 0.00 42.21 2.77
1837 2017 2.076100 CCGCTCAAGCACACTATCAAA 58.924 47.619 2.50 0.00 42.21 2.69
1838 2018 1.275010 TCCGCTCAAGCACACTATCAA 59.725 47.619 2.50 0.00 42.21 2.57
1839 2019 0.894835 TCCGCTCAAGCACACTATCA 59.105 50.000 2.50 0.00 42.21 2.15
1840 2020 2.231215 ATCCGCTCAAGCACACTATC 57.769 50.000 2.50 0.00 42.21 2.08
1841 2021 2.695666 AGTATCCGCTCAAGCACACTAT 59.304 45.455 2.50 0.00 42.21 2.12
1842 2022 2.100197 AGTATCCGCTCAAGCACACTA 58.900 47.619 2.50 0.00 42.21 2.74
1843 2023 0.898320 AGTATCCGCTCAAGCACACT 59.102 50.000 2.50 0.00 42.21 3.55
1844 2024 2.194271 GTAGTATCCGCTCAAGCACAC 58.806 52.381 2.50 0.00 42.21 3.82
1845 2025 1.822371 TGTAGTATCCGCTCAAGCACA 59.178 47.619 2.50 0.00 42.21 4.57
1846 2026 2.159226 AGTGTAGTATCCGCTCAAGCAC 60.159 50.000 2.50 0.00 42.21 4.40
1847 2027 2.100197 AGTGTAGTATCCGCTCAAGCA 58.900 47.619 2.50 0.00 42.21 3.91
1848 2028 2.464865 CAGTGTAGTATCCGCTCAAGC 58.535 52.381 0.00 0.00 37.78 4.01
1849 2029 2.099921 AGCAGTGTAGTATCCGCTCAAG 59.900 50.000 0.00 0.00 0.00 3.02
1850 2030 2.100197 AGCAGTGTAGTATCCGCTCAA 58.900 47.619 0.00 0.00 0.00 3.02
1851 2031 1.405463 CAGCAGTGTAGTATCCGCTCA 59.595 52.381 0.00 0.00 0.00 4.26
1852 2032 1.405821 ACAGCAGTGTAGTATCCGCTC 59.594 52.381 0.00 0.00 34.05 5.03
1853 2033 1.405821 GACAGCAGTGTAGTATCCGCT 59.594 52.381 0.00 0.00 36.88 5.52
1854 2034 1.405821 AGACAGCAGTGTAGTATCCGC 59.594 52.381 0.00 0.00 36.88 5.54
1855 2035 3.439293 CAAGACAGCAGTGTAGTATCCG 58.561 50.000 0.00 0.00 36.88 4.18
1856 2036 3.447586 TCCAAGACAGCAGTGTAGTATCC 59.552 47.826 0.00 0.00 36.88 2.59
1857 2037 4.720649 TCCAAGACAGCAGTGTAGTATC 57.279 45.455 0.00 0.00 36.88 2.24
1858 2038 4.141846 CCATCCAAGACAGCAGTGTAGTAT 60.142 45.833 0.00 0.00 36.88 2.12
1859 2039 3.195610 CCATCCAAGACAGCAGTGTAGTA 59.804 47.826 0.00 0.00 36.88 1.82
1860 2040 2.027745 CCATCCAAGACAGCAGTGTAGT 60.028 50.000 0.00 0.00 36.88 2.73
1861 2041 2.625737 CCATCCAAGACAGCAGTGTAG 58.374 52.381 0.00 0.00 36.88 2.74
1862 2042 1.339055 GCCATCCAAGACAGCAGTGTA 60.339 52.381 0.00 0.00 36.88 2.90
1863 2043 0.607489 GCCATCCAAGACAGCAGTGT 60.607 55.000 0.00 0.00 40.71 3.55
1864 2044 0.322277 AGCCATCCAAGACAGCAGTG 60.322 55.000 0.00 0.00 0.00 3.66
1865 2045 0.322277 CAGCCATCCAAGACAGCAGT 60.322 55.000 0.00 0.00 0.00 4.40
1866 2046 1.030488 CCAGCCATCCAAGACAGCAG 61.030 60.000 0.00 0.00 0.00 4.24
1867 2047 1.001764 CCAGCCATCCAAGACAGCA 60.002 57.895 0.00 0.00 0.00 4.41
1868 2048 1.751927 CCCAGCCATCCAAGACAGC 60.752 63.158 0.00 0.00 0.00 4.40
1869 2049 0.329261 TTCCCAGCCATCCAAGACAG 59.671 55.000 0.00 0.00 0.00 3.51
1870 2050 0.776810 TTTCCCAGCCATCCAAGACA 59.223 50.000 0.00 0.00 0.00 3.41
1871 2051 1.177401 GTTTCCCAGCCATCCAAGAC 58.823 55.000 0.00 0.00 0.00 3.01
1872 2052 0.322456 CGTTTCCCAGCCATCCAAGA 60.322 55.000 0.00 0.00 0.00 3.02
1873 2053 0.609131 ACGTTTCCCAGCCATCCAAG 60.609 55.000 0.00 0.00 0.00 3.61
1874 2054 0.693622 TACGTTTCCCAGCCATCCAA 59.306 50.000 0.00 0.00 0.00 3.53
1875 2055 0.916086 ATACGTTTCCCAGCCATCCA 59.084 50.000 0.00 0.00 0.00 3.41
1876 2056 2.104281 ACTATACGTTTCCCAGCCATCC 59.896 50.000 0.00 0.00 0.00 3.51
1877 2057 3.470645 ACTATACGTTTCCCAGCCATC 57.529 47.619 0.00 0.00 0.00 3.51
1878 2058 3.541632 CAACTATACGTTTCCCAGCCAT 58.458 45.455 0.00 0.00 32.27 4.40
1879 2059 2.355310 CCAACTATACGTTTCCCAGCCA 60.355 50.000 0.00 0.00 32.27 4.75
1880 2060 2.285977 CCAACTATACGTTTCCCAGCC 58.714 52.381 0.00 0.00 32.27 4.85
1881 2061 1.669265 GCCAACTATACGTTTCCCAGC 59.331 52.381 0.00 0.00 32.27 4.85
1882 2062 2.285977 GGCCAACTATACGTTTCCCAG 58.714 52.381 0.00 0.00 32.27 4.45
1883 2063 1.629353 TGGCCAACTATACGTTTCCCA 59.371 47.619 0.61 0.00 33.27 4.37
1884 2064 2.406596 TGGCCAACTATACGTTTCCC 57.593 50.000 0.61 0.00 32.27 3.97
1885 2065 3.805207 AGATGGCCAACTATACGTTTCC 58.195 45.455 14.88 0.00 32.27 3.13
1886 2066 4.270325 GTGAGATGGCCAACTATACGTTTC 59.730 45.833 16.55 1.07 32.27 2.78
1887 2067 4.189231 GTGAGATGGCCAACTATACGTTT 58.811 43.478 16.55 0.00 32.27 3.60
1888 2068 3.737047 CGTGAGATGGCCAACTATACGTT 60.737 47.826 28.86 6.75 35.88 3.99
1889 2069 2.223735 CGTGAGATGGCCAACTATACGT 60.224 50.000 28.86 7.41 0.00 3.57
1890 2070 2.394708 CGTGAGATGGCCAACTATACG 58.605 52.381 26.47 26.47 0.00 3.06
1891 2071 2.135933 GCGTGAGATGGCCAACTATAC 58.864 52.381 16.55 16.08 0.00 1.47
1892 2072 2.035961 GAGCGTGAGATGGCCAACTATA 59.964 50.000 16.55 5.42 0.00 1.31
1893 2073 0.833287 AGCGTGAGATGGCCAACTAT 59.167 50.000 16.55 0.00 0.00 2.12
1894 2074 0.175760 GAGCGTGAGATGGCCAACTA 59.824 55.000 16.55 1.90 0.00 2.24
1895 2075 1.078848 GAGCGTGAGATGGCCAACT 60.079 57.895 16.53 16.53 0.00 3.16
1896 2076 1.364626 CTGAGCGTGAGATGGCCAAC 61.365 60.000 10.96 7.42 0.00 3.77
1897 2077 1.078918 CTGAGCGTGAGATGGCCAA 60.079 57.895 10.96 0.00 0.00 4.52
1898 2078 2.580815 CTGAGCGTGAGATGGCCA 59.419 61.111 8.56 8.56 0.00 5.36
1899 2079 2.202987 CCTGAGCGTGAGATGGCC 60.203 66.667 0.00 0.00 0.00 5.36
1900 2080 1.078848 AACCTGAGCGTGAGATGGC 60.079 57.895 0.00 0.00 0.00 4.40
1901 2081 1.364626 GCAACCTGAGCGTGAGATGG 61.365 60.000 0.00 0.00 0.00 3.51
1902 2082 0.671472 TGCAACCTGAGCGTGAGATG 60.671 55.000 0.00 0.00 33.85 2.90
1903 2083 0.390866 CTGCAACCTGAGCGTGAGAT 60.391 55.000 0.00 0.00 33.85 2.75
1904 2084 1.005748 CTGCAACCTGAGCGTGAGA 60.006 57.895 0.00 0.00 33.85 3.27
1905 2085 0.038251 TACTGCAACCTGAGCGTGAG 60.038 55.000 0.00 0.00 33.85 3.51
1906 2086 0.391228 TTACTGCAACCTGAGCGTGA 59.609 50.000 0.00 0.00 33.85 4.35
1907 2087 1.442769 ATTACTGCAACCTGAGCGTG 58.557 50.000 0.00 0.00 33.85 5.34
1908 2088 1.806542 CAATTACTGCAACCTGAGCGT 59.193 47.619 0.00 0.00 33.85 5.07
1909 2089 1.131126 CCAATTACTGCAACCTGAGCG 59.869 52.381 0.00 0.00 33.85 5.03
1910 2090 2.436417 TCCAATTACTGCAACCTGAGC 58.564 47.619 0.00 0.00 0.00 4.26
1911 2091 4.074970 ACTTCCAATTACTGCAACCTGAG 58.925 43.478 0.00 0.00 0.00 3.35
1912 2092 3.820467 CACTTCCAATTACTGCAACCTGA 59.180 43.478 0.00 0.00 0.00 3.86
1913 2093 3.612479 GCACTTCCAATTACTGCAACCTG 60.612 47.826 0.00 0.00 0.00 4.00
1914 2094 2.558359 GCACTTCCAATTACTGCAACCT 59.442 45.455 0.00 0.00 0.00 3.50
1915 2095 2.668279 CGCACTTCCAATTACTGCAACC 60.668 50.000 0.00 0.00 0.00 3.77
1916 2096 2.584791 CGCACTTCCAATTACTGCAAC 58.415 47.619 0.00 0.00 0.00 4.17
1917 2097 1.068610 GCGCACTTCCAATTACTGCAA 60.069 47.619 0.30 0.00 0.00 4.08
1918 2098 0.521291 GCGCACTTCCAATTACTGCA 59.479 50.000 0.30 0.00 0.00 4.41
1919 2099 0.179163 GGCGCACTTCCAATTACTGC 60.179 55.000 10.83 0.00 0.00 4.40
1920 2100 0.096976 CGGCGCACTTCCAATTACTG 59.903 55.000 10.83 0.00 0.00 2.74
1921 2101 0.321298 ACGGCGCACTTCCAATTACT 60.321 50.000 10.83 0.00 0.00 2.24
1922 2102 0.179200 CACGGCGCACTTCCAATTAC 60.179 55.000 10.83 0.00 0.00 1.89
1923 2103 0.320858 TCACGGCGCACTTCCAATTA 60.321 50.000 10.83 0.00 0.00 1.40
1924 2104 1.169661 TTCACGGCGCACTTCCAATT 61.170 50.000 10.83 0.00 0.00 2.32
1925 2105 1.169661 TTTCACGGCGCACTTCCAAT 61.170 50.000 10.83 0.00 0.00 3.16
1926 2106 1.781025 CTTTCACGGCGCACTTCCAA 61.781 55.000 10.83 0.00 0.00 3.53
1927 2107 2.203084 TTTCACGGCGCACTTCCA 60.203 55.556 10.83 0.00 0.00 3.53
1928 2108 2.556287 CTTTCACGGCGCACTTCC 59.444 61.111 10.83 0.00 0.00 3.46
1929 2109 1.289109 TAGCTTTCACGGCGCACTTC 61.289 55.000 10.83 0.00 34.52 3.01
1930 2110 0.882927 TTAGCTTTCACGGCGCACTT 60.883 50.000 10.83 0.00 34.52 3.16
1931 2111 1.291877 CTTAGCTTTCACGGCGCACT 61.292 55.000 10.83 0.00 34.52 4.40
1932 2112 1.132640 CTTAGCTTTCACGGCGCAC 59.867 57.895 10.83 0.00 34.52 5.34
1933 2113 1.005512 TCTTAGCTTTCACGGCGCA 60.006 52.632 10.83 0.00 34.52 6.09
1934 2114 1.289109 TGTCTTAGCTTTCACGGCGC 61.289 55.000 6.90 0.00 34.52 6.53
1935 2115 1.144969 TTGTCTTAGCTTTCACGGCG 58.855 50.000 4.80 4.80 34.52 6.46
1936 2116 2.742053 TCATTGTCTTAGCTTTCACGGC 59.258 45.455 0.00 0.00 0.00 5.68
1975 2155 7.339466 AGGACAAAAAGGATAGCACGAATTAAT 59.661 33.333 0.00 0.00 0.00 1.40
1982 2162 4.693566 TGTTAGGACAAAAAGGATAGCACG 59.306 41.667 0.00 0.00 31.49 5.34
2091 2271 3.778629 ACCCTTATGAAACCGTGATACCT 59.221 43.478 0.00 0.00 0.00 3.08
2163 2345 5.468746 GGTTGTGACTTAACTTGATGCTGTA 59.531 40.000 0.00 0.00 0.00 2.74
2164 2346 4.275936 GGTTGTGACTTAACTTGATGCTGT 59.724 41.667 0.00 0.00 0.00 4.40
2224 2406 8.419922 TTTGGCATGGCATATTCAGAAATATA 57.580 30.769 23.96 0.00 36.18 0.86
2231 2415 3.985279 CGATTTTGGCATGGCATATTCAG 59.015 43.478 23.96 14.60 0.00 3.02
2232 2416 3.243805 CCGATTTTGGCATGGCATATTCA 60.244 43.478 23.96 4.41 0.00 2.57
2238 2422 0.323269 TCTCCGATTTTGGCATGGCA 60.323 50.000 19.43 19.43 0.00 4.92
2314 2500 1.757682 TTTGCCACTCCAGTTTTCGT 58.242 45.000 0.00 0.00 0.00 3.85
2390 2576 4.343526 CCACTCTGTATAGTCAATGCTCCT 59.656 45.833 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.