Multiple sequence alignment - TraesCS4B01G268800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G268800 chr4B 100.000 6620 0 0 1 6620 543862382 543869001 0.000000e+00 12225.0
1 TraesCS4B01G268800 chr4B 88.060 201 22 2 6421 6620 59574364 59574563 3.090000e-58 237.0
2 TraesCS4B01G268800 chr4B 94.595 74 3 1 1748 1821 142056883 142056811 5.430000e-21 113.0
3 TraesCS4B01G268800 chr4D 95.111 2700 83 23 2625 5281 439657526 439660219 0.000000e+00 4209.0
4 TraesCS4B01G268800 chr4D 97.991 896 17 1 1821 2716 439656647 439657541 0.000000e+00 1554.0
5 TraesCS4B01G268800 chr4D 90.173 1211 71 15 575 1750 439655453 439656650 0.000000e+00 1533.0
6 TraesCS4B01G268800 chr4D 94.698 679 19 5 5298 5973 439660272 439660936 0.000000e+00 1038.0
7 TraesCS4B01G268800 chr4D 88.805 661 52 14 5972 6620 439661198 439661848 0.000000e+00 791.0
8 TraesCS4B01G268800 chr4D 87.879 264 26 4 1 258 417833070 417832807 8.340000e-79 305.0
9 TraesCS4B01G268800 chr4D 89.535 86 9 0 1746 1831 21876058 21876143 7.020000e-20 110.0
10 TraesCS4B01G268800 chr4A 95.305 1278 47 8 1090 2360 28994462 28995733 0.000000e+00 2015.0
11 TraesCS4B01G268800 chr4A 91.194 1499 80 23 3817 5281 28997024 28998504 0.000000e+00 1989.0
12 TraesCS4B01G268800 chr4A 93.640 912 34 11 5298 6204 28998557 28999449 0.000000e+00 1341.0
13 TraesCS4B01G268800 chr4A 96.132 698 24 3 3125 3820 28996273 28996969 0.000000e+00 1136.0
14 TraesCS4B01G268800 chr4A 93.528 479 18 7 575 1041 28993700 28994177 0.000000e+00 701.0
15 TraesCS4B01G268800 chr4A 92.690 342 10 1 2363 2704 28995918 28996244 4.640000e-131 479.0
16 TraesCS4B01G268800 chr4A 87.978 183 21 1 2765 2946 687149710 687149892 1.450000e-51 215.0
17 TraesCS4B01G268800 chr4A 90.244 82 6 1 1746 1825 296323135 296323216 9.080000e-19 106.0
18 TraesCS4B01G268800 chr3D 87.391 571 53 15 12 576 599004793 599005350 7.240000e-179 638.0
19 TraesCS4B01G268800 chr3D 82.915 398 56 11 6228 6620 523801991 523801601 1.370000e-91 348.0
20 TraesCS4B01G268800 chr3D 92.308 78 6 0 1747 1824 169888215 169888138 1.950000e-20 111.0
21 TraesCS4B01G268800 chr2D 85.989 571 60 16 12 575 233704114 233704671 1.590000e-165 593.0
22 TraesCS4B01G268800 chr2D 84.534 569 58 18 12 574 603015162 603014618 2.720000e-148 536.0
23 TraesCS4B01G268800 chr2D 82.880 368 42 12 6257 6620 123167385 123167035 1.790000e-80 311.0
24 TraesCS4B01G268800 chr2D 88.525 183 20 1 2765 2946 131770222 131770404 3.110000e-53 220.0
25 TraesCS4B01G268800 chr2D 90.361 83 4 1 1745 1827 8495901 8495979 9.080000e-19 106.0
26 TraesCS4B01G268800 chr6B 85.092 597 63 16 1 573 19116031 19116625 2.660000e-163 586.0
27 TraesCS4B01G268800 chr6B 83.019 477 56 12 6153 6620 505306182 505305722 6.180000e-110 409.0
28 TraesCS4B01G268800 chr6B 85.512 283 28 13 6247 6522 698442467 698442191 3.910000e-72 283.0
29 TraesCS4B01G268800 chr6B 85.159 283 29 13 6247 6522 698812191 698812467 1.820000e-70 278.0
30 TraesCS4B01G268800 chr6B 88.398 181 20 1 2765 2944 551758379 551758199 4.020000e-52 217.0
31 TraesCS4B01G268800 chr5D 85.614 570 64 15 12 575 22572949 22573506 3.440000e-162 582.0
32 TraesCS4B01G268800 chr6D 85.910 511 45 15 12 518 376847933 376847446 2.740000e-143 520.0
33 TraesCS4B01G268800 chr6D 84.211 380 44 16 6247 6620 459172156 459172525 8.160000e-94 355.0
34 TraesCS4B01G268800 chr6D 80.577 381 52 15 6246 6620 471234168 471233804 2.350000e-69 274.0
35 TraesCS4B01G268800 chr7D 87.244 439 49 6 123 555 611004370 611004807 1.660000e-135 494.0
36 TraesCS4B01G268800 chr2A 88.166 338 31 7 179 509 507160483 507160818 1.730000e-105 394.0
37 TraesCS4B01G268800 chr2A 84.655 391 53 5 173 559 588991159 588991546 3.750000e-102 383.0
38 TraesCS4B01G268800 chr6A 83.824 408 59 5 173 576 359073172 359073576 1.350000e-101 381.0
39 TraesCS4B01G268800 chr6A 80.789 380 52 14 6246 6620 615961328 615960965 1.820000e-70 278.0
40 TraesCS4B01G268800 chr3B 84.167 360 44 13 6264 6618 275818789 275819140 2.960000e-88 337.0
41 TraesCS4B01G268800 chr3B 85.127 316 45 2 179 492 357689468 357689153 8.280000e-84 322.0
42 TraesCS4B01G268800 chr3B 84.691 307 33 12 6319 6620 691263776 691263479 1.810000e-75 294.0
43 TraesCS4B01G268800 chr1D 89.600 250 23 3 12 258 481604667 481604418 1.390000e-81 315.0
44 TraesCS4B01G268800 chr1D 85.017 287 36 5 296 576 481604411 481604126 1.090000e-72 285.0
45 TraesCS4B01G268800 chr2B 85.664 286 36 5 294 575 699918097 699918381 5.020000e-76 296.0
46 TraesCS4B01G268800 chr3A 80.519 385 39 19 6266 6620 471814814 471814436 5.090000e-66 263.0
47 TraesCS4B01G268800 chr3A 88.462 182 19 2 2765 2945 614659923 614660103 1.120000e-52 219.0
48 TraesCS4B01G268800 chr1B 87.745 204 19 5 6228 6428 329491840 329492040 3.990000e-57 233.0
49 TraesCS4B01G268800 chr1B 82.822 163 23 5 6451 6613 656987598 656987441 2.490000e-29 141.0
50 TraesCS4B01G268800 chr1B 92.105 76 4 2 1747 1822 461244537 461244610 9.080000e-19 106.0
51 TraesCS4B01G268800 chr7B 88.108 185 17 5 2765 2946 245705493 245705311 1.450000e-51 215.0
52 TraesCS4B01G268800 chr7B 88.043 184 19 3 2765 2946 336656752 336656570 1.450000e-51 215.0
53 TraesCS4B01G268800 chr7B 83.058 242 34 7 6382 6620 637349417 637349180 5.200000e-51 213.0
54 TraesCS4B01G268800 chr7B 90.361 83 4 2 1747 1825 566635043 566634961 9.080000e-19 106.0
55 TraesCS4B01G268800 chr5B 87.978 183 20 2 2765 2946 673099196 673099377 1.450000e-51 215.0
56 TraesCS4B01G268800 chr1A 88.108 185 17 5 2764 2945 366295744 366295562 1.450000e-51 215.0
57 TraesCS4B01G268800 chr7A 87.952 83 6 2 1747 1829 593466580 593466658 1.970000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G268800 chr4B 543862382 543869001 6619 False 12225.000000 12225 100.000000 1 6620 1 chr4B.!!$F2 6619
1 TraesCS4B01G268800 chr4D 439655453 439661848 6395 False 1825.000000 4209 93.355600 575 6620 5 chr4D.!!$F2 6045
2 TraesCS4B01G268800 chr4A 28993700 28999449 5749 False 1276.833333 2015 93.748167 575 6204 6 chr4A.!!$F3 5629
3 TraesCS4B01G268800 chr3D 599004793 599005350 557 False 638.000000 638 87.391000 12 576 1 chr3D.!!$F1 564
4 TraesCS4B01G268800 chr2D 233704114 233704671 557 False 593.000000 593 85.989000 12 575 1 chr2D.!!$F3 563
5 TraesCS4B01G268800 chr2D 603014618 603015162 544 True 536.000000 536 84.534000 12 574 1 chr2D.!!$R2 562
6 TraesCS4B01G268800 chr6B 19116031 19116625 594 False 586.000000 586 85.092000 1 573 1 chr6B.!!$F1 572
7 TraesCS4B01G268800 chr5D 22572949 22573506 557 False 582.000000 582 85.614000 12 575 1 chr5D.!!$F1 563
8 TraesCS4B01G268800 chr1D 481604126 481604667 541 True 300.000000 315 87.308500 12 576 2 chr1D.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 593 0.107897 TCCGTTGCAACACACAGTCT 60.108 50.000 28.01 0.00 0.00 3.24 F
755 794 0.108019 GTTGGGTGACGACCTTTCCT 59.892 55.000 0.00 0.00 42.66 3.36 F
1376 1677 1.217882 CATCTACCGCGATCCCAAAC 58.782 55.000 8.23 0.00 0.00 2.93 F
2893 3462 0.176680 ACTGATGCTCGAATTCGGCT 59.823 50.000 28.85 19.67 40.29 5.52 F
3072 3647 0.533032 TCTCTCTCGCTCGTCTCTCA 59.467 55.000 0.00 0.00 0.00 3.27 F
4238 4899 1.384191 GGTTGTTCCTGGCCCTGAT 59.616 57.895 0.00 0.00 0.00 2.90 F
4998 5666 1.619654 TTTCTGTTGCCATGACTGGG 58.380 50.000 0.00 0.00 43.36 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2307 2616 1.434696 GGCCCGCACAAATGATGAG 59.565 57.895 0.00 0.00 0.00 2.90 R
2736 3304 3.451178 GGGGATAACTCACAAGACTAGCA 59.549 47.826 0.00 0.00 0.00 3.49 R
2895 3464 0.787787 TGTCGGTTTCGCTGATTTCG 59.212 50.000 0.00 0.00 34.56 3.46 R
4435 5101 1.202348 GATGGCAACCTGGTTTACTGC 59.798 52.381 9.90 11.03 0.00 4.40 R
4984 5652 1.379044 CCCTCCCAGTCATGGCAAC 60.379 63.158 0.00 0.00 46.19 4.17 R
5202 5892 0.034767 TCTACCCACGTGAGACCGAT 60.035 55.000 19.30 0.00 0.00 4.18 R
6449 7451 0.169672 CTTCGGGACTTGCAAGCATG 59.830 55.000 26.27 13.50 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.880054 ATTTCTTTGAACGACATTCCGAT 57.120 34.783 0.00 0.00 36.36 4.18
41 42 8.657074 TCTTTGAACGACATTCCGATAATATT 57.343 30.769 0.00 0.00 36.36 1.28
77 80 4.850680 TGCCCATACGGACTAAATTTCTT 58.149 39.130 0.00 0.00 0.00 2.52
213 221 3.118482 TCAGCTGGTGAATCCATTCTCTC 60.118 47.826 15.13 0.00 46.12 3.20
248 259 6.318648 ACTGTATCTCTCTCATCTCTTGTGTC 59.681 42.308 0.00 0.00 0.00 3.67
249 260 6.183347 TGTATCTCTCTCATCTCTTGTGTCA 58.817 40.000 0.00 0.00 0.00 3.58
263 274 1.523484 TGTCAAGTGAGCGCTTGCA 60.523 52.632 13.26 2.07 43.92 4.08
265 276 0.385223 GTCAAGTGAGCGCTTGCAAG 60.385 55.000 22.44 22.44 43.92 4.01
279 290 0.895100 TGCAAGGGGACATGCAAGAC 60.895 55.000 0.00 0.00 46.68 3.01
284 296 1.133199 AGGGGACATGCAAGACCAAAA 60.133 47.619 12.28 0.00 0.00 2.44
332 345 1.202394 CGATGAGCTAAGCAGAGCAGT 60.202 52.381 11.90 0.00 45.43 4.40
341 354 0.894141 AGCAGAGCAGTTGACGATCT 59.106 50.000 0.00 0.00 0.00 2.75
344 357 2.257894 CAGAGCAGTTGACGATCTGAC 58.742 52.381 12.49 0.00 39.80 3.51
349 362 2.280183 GCAGTTGACGATCTGACGATTC 59.720 50.000 0.00 0.00 37.03 2.52
350 363 2.527887 CAGTTGACGATCTGACGATTCG 59.472 50.000 4.14 4.14 37.03 3.34
353 366 0.381089 GACGATCTGACGATTCGGGT 59.619 55.000 11.29 0.00 37.03 5.28
356 369 1.202256 CGATCTGACGATTCGGGTTCA 60.202 52.381 11.29 4.48 35.09 3.18
357 370 2.543861 CGATCTGACGATTCGGGTTCAT 60.544 50.000 11.29 0.00 35.09 2.57
358 371 2.293677 TCTGACGATTCGGGTTCATG 57.706 50.000 11.29 0.00 0.00 3.07
359 372 0.652592 CTGACGATTCGGGTTCATGC 59.347 55.000 11.29 0.00 0.00 4.06
360 373 0.249120 TGACGATTCGGGTTCATGCT 59.751 50.000 11.29 0.00 0.00 3.79
361 374 1.478916 TGACGATTCGGGTTCATGCTA 59.521 47.619 11.29 0.00 0.00 3.49
362 375 2.128035 GACGATTCGGGTTCATGCTAG 58.872 52.381 11.29 0.00 0.00 3.42
363 376 0.861837 CGATTCGGGTTCATGCTAGC 59.138 55.000 8.10 8.10 0.00 3.42
365 378 0.546122 ATTCGGGTTCATGCTAGCCA 59.454 50.000 13.29 0.24 32.71 4.75
368 383 1.064758 TCGGGTTCATGCTAGCCATTT 60.065 47.619 13.29 0.00 32.71 2.32
372 387 3.195396 GGGTTCATGCTAGCCATTTTCAA 59.805 43.478 13.29 0.00 33.39 2.69
455 471 5.546621 AAGTGAGAGTTGGTACTAAAGCA 57.453 39.130 0.00 0.00 33.84 3.91
477 495 5.096169 CAGATTGCTCTTTTTGATCTGCAG 58.904 41.667 7.63 7.63 37.84 4.41
493 521 6.208007 TGATCTGCAGACAAATTTCAGTCATT 59.792 34.615 20.97 0.00 37.23 2.57
555 585 6.325919 AGATTTATTTCTTCCGTTGCAACA 57.674 33.333 28.01 7.99 0.00 3.33
559 589 1.454201 TTCTTCCGTTGCAACACACA 58.546 45.000 28.01 8.73 0.00 3.72
561 591 0.732571 CTTCCGTTGCAACACACAGT 59.267 50.000 28.01 0.00 0.00 3.55
563 593 0.107897 TCCGTTGCAACACACAGTCT 60.108 50.000 28.01 0.00 0.00 3.24
581 611 9.531158 ACACAGTCTCTTTTACTAGTATAACCT 57.469 33.333 2.79 0.00 0.00 3.50
619 650 8.472007 TTTGTGATCCATTTAGTACTTGGTTT 57.528 30.769 11.09 2.08 0.00 3.27
638 669 9.722056 CTTGGTTTTGATACTATCATTTACTGC 57.278 33.333 0.00 0.00 39.39 4.40
658 689 4.394729 TGCCCGAATCCACCTAATAATTC 58.605 43.478 0.00 0.00 0.00 2.17
690 721 9.698309 AATTAAATCAGAATCGACGAGATGTAT 57.302 29.630 3.01 0.00 40.02 2.29
691 722 6.999956 AAATCAGAATCGACGAGATGTATG 57.000 37.500 3.01 0.00 40.02 2.39
693 724 5.349824 TCAGAATCGACGAGATGTATGAG 57.650 43.478 3.01 0.00 40.02 2.90
694 725 5.057149 TCAGAATCGACGAGATGTATGAGA 58.943 41.667 3.01 0.00 40.02 3.27
698 729 6.915300 AGAATCGACGAGATGTATGAGAAAAG 59.085 38.462 3.01 0.00 40.02 2.27
737 776 1.544825 CCATGACACCAGAGTCCGGT 61.545 60.000 0.00 0.00 37.73 5.28
755 794 0.108019 GTTGGGTGACGACCTTTCCT 59.892 55.000 0.00 0.00 42.66 3.36
885 930 1.946475 CTCCCGAACGAGTTCCTCCC 61.946 65.000 10.03 0.00 36.27 4.30
949 999 1.519455 CGCCTCGCTAGGGTTTCAG 60.519 63.158 6.39 0.00 43.87 3.02
991 1050 3.142393 CCCGATCCCGCTTGATCT 58.858 61.111 9.71 0.00 39.20 2.75
1376 1677 1.217882 CATCTACCGCGATCCCAAAC 58.782 55.000 8.23 0.00 0.00 2.93
1387 1688 2.093447 CGATCCCAAACTGCCTTCTAGT 60.093 50.000 0.00 0.00 0.00 2.57
1584 1891 4.780815 TGGTTTCTGTTCTGCCATATAGG 58.219 43.478 0.00 0.00 41.84 2.57
1629 1936 9.457653 GCATTGAAGTTAATGTGCAATTCTGCC 62.458 40.741 0.00 0.00 41.43 4.85
1755 2062 6.254522 TGTAGCTTAAACTTCTACTCCCTCT 58.745 40.000 0.00 0.00 35.10 3.69
1774 2081 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
1797 2104 6.400091 GCGTTTACATCACTAGAGAAACACTG 60.400 42.308 0.00 0.00 30.83 3.66
1993 2300 6.202188 TCAGTCAAATTGTTCTCTTTCCGTAC 59.798 38.462 0.00 0.00 0.00 3.67
2006 2314 3.559238 TTCCGTACGAGTACCTGTTTC 57.441 47.619 18.76 0.00 32.61 2.78
2172 2480 8.191446 TCTATTGAGTAGATGTACACTTTCTGC 58.809 37.037 0.00 0.93 34.50 4.26
2272 2581 6.545504 ACATATAATGAGGTTAGCGCTTTG 57.454 37.500 18.68 0.00 0.00 2.77
2307 2616 8.593492 AGCTCAAAATTCCTGTTGTTATTTTC 57.407 30.769 0.00 0.00 30.17 2.29
2632 3120 6.413783 TGCATGCCTTTGATATCATGAAAT 57.586 33.333 16.68 0.00 38.77 2.17
2720 3288 7.828717 TGGAAGTCATGAAACTGCAAATAGATA 59.171 33.333 0.00 0.00 0.00 1.98
2835 3403 1.955778 CCACATTTGAACCAGAGCACA 59.044 47.619 0.00 0.00 0.00 4.57
2893 3462 0.176680 ACTGATGCTCGAATTCGGCT 59.823 50.000 28.85 19.67 40.29 5.52
2895 3464 1.278038 GATGCTCGAATTCGGCTGC 59.722 57.895 28.85 26.35 40.29 5.25
2948 3517 2.514592 CGGGATGACATGGCGCTT 60.515 61.111 7.64 0.00 0.00 4.68
2954 3523 1.402968 GATGACATGGCGCTTGTTGAT 59.597 47.619 15.78 11.60 0.00 2.57
2958 3527 2.874701 GACATGGCGCTTGTTGATAGAT 59.125 45.455 15.78 0.00 0.00 1.98
2988 3557 2.867472 CGACACACGGCCATTTCC 59.133 61.111 2.24 0.00 38.46 3.13
3020 3590 2.788786 CGTACACGTTTAAGTTGGTCGT 59.211 45.455 0.00 0.00 35.12 4.34
3024 3594 2.031191 CACGTTTAAGTTGGTCGTGCTT 59.969 45.455 12.69 0.00 43.39 3.91
3072 3647 0.533032 TCTCTCTCGCTCGTCTCTCA 59.467 55.000 0.00 0.00 0.00 3.27
3082 3657 2.336478 CGTCTCTCACCTGCGACCT 61.336 63.158 0.00 0.00 0.00 3.85
3305 3884 8.116651 TCTCTAGGAGTAGCATTATTGATGAC 57.883 38.462 0.00 0.00 38.03 3.06
3338 3917 6.094048 TGTTAGAGCTCATACATTTTGCCTTC 59.906 38.462 17.77 0.00 0.00 3.46
3894 4532 6.624423 CATTTAGTTAGTGTACCGTGTACCT 58.376 40.000 10.45 9.52 0.00 3.08
4155 4811 8.460831 AAATTACGTTTGTTATGATCTTTGCC 57.539 30.769 0.00 0.00 0.00 4.52
4238 4899 1.384191 GGTTGTTCCTGGCCCTGAT 59.616 57.895 0.00 0.00 0.00 2.90
4323 4984 6.112058 AGATAGTTCCATTCTTTCAGCAGTC 58.888 40.000 0.00 0.00 0.00 3.51
4340 5001 5.580691 CAGCAGTCGATAAATTGGAGTAACA 59.419 40.000 0.00 0.00 0.00 2.41
4435 5101 4.221703 AGTTCCTACTCTCCACATGTTCTG 59.778 45.833 0.00 0.00 0.00 3.02
4436 5102 2.497675 TCCTACTCTCCACATGTTCTGC 59.502 50.000 0.00 0.00 0.00 4.26
4795 5461 4.330250 ACAGTTCTGCTTTCTGTGCATAT 58.670 39.130 0.00 0.00 40.29 1.78
4968 5635 9.601217 GAGCTTTCCAGTTTATCTAAGAATACA 57.399 33.333 0.00 0.00 0.00 2.29
4998 5666 1.619654 TTTCTGTTGCCATGACTGGG 58.380 50.000 0.00 0.00 43.36 4.45
5135 5820 3.134804 ACTGGAGCGGCTTCTAATTGTAT 59.865 43.478 10.15 0.00 0.00 2.29
5179 5869 6.817765 TTTTAAGTTTAGACCTGATGCCAG 57.182 37.500 0.00 0.00 40.09 4.85
5202 5892 8.839343 CCAGCTAATATTGATACACATGTTTGA 58.161 33.333 0.00 0.00 0.00 2.69
5229 5920 0.175760 CACGTGGGTAGACAGATGGG 59.824 60.000 7.95 0.00 0.00 4.00
5342 6069 4.836175 TCAACACAAGGTGTCCTGACTATA 59.164 41.667 2.07 0.00 46.79 1.31
5494 6221 3.188786 GCTCGAGCACGCCGAATT 61.189 61.111 31.91 0.00 41.59 2.17
5642 6369 3.194062 CAGGGCGTTTGTTTTGATTGTT 58.806 40.909 0.00 0.00 0.00 2.83
5643 6370 3.620821 CAGGGCGTTTGTTTTGATTGTTT 59.379 39.130 0.00 0.00 0.00 2.83
5644 6371 3.620821 AGGGCGTTTGTTTTGATTGTTTG 59.379 39.130 0.00 0.00 0.00 2.93
5645 6372 3.372514 GGGCGTTTGTTTTGATTGTTTGT 59.627 39.130 0.00 0.00 0.00 2.83
5776 6503 4.419200 TGATAGAGTGTGATAGGTACCCCT 59.581 45.833 8.74 0.00 45.51 4.79
5777 6504 3.033659 AGAGTGTGATAGGTACCCCTG 57.966 52.381 8.74 0.00 42.67 4.45
5778 6505 2.585900 AGAGTGTGATAGGTACCCCTGA 59.414 50.000 8.74 0.00 42.67 3.86
5779 6506 3.012502 AGAGTGTGATAGGTACCCCTGAA 59.987 47.826 8.74 0.00 42.67 3.02
5780 6507 3.967987 GAGTGTGATAGGTACCCCTGAAT 59.032 47.826 8.74 0.00 42.67 2.57
5783 6510 2.638363 GTGATAGGTACCCCTGAATCCC 59.362 54.545 8.74 0.00 42.67 3.85
5801 6528 0.249784 CCTGATCTGTGATGCTCCCG 60.250 60.000 0.00 0.00 0.00 5.14
5943 6671 1.225854 GTCAGTTCGCATGCTTCGC 60.226 57.895 17.13 3.27 0.00 4.70
6021 7014 2.191641 GGCAGCACTCCCCAGATC 59.808 66.667 0.00 0.00 0.00 2.75
6022 7015 2.373707 GGCAGCACTCCCCAGATCT 61.374 63.158 0.00 0.00 0.00 2.75
6026 7019 1.070445 CAGCACTCCCCAGATCTGATC 59.930 57.143 24.62 9.65 0.00 2.92
6034 7027 4.682563 TCCCCAGATCTGATCTTCCTATC 58.317 47.826 24.62 0.00 37.58 2.08
6052 7046 9.397280 CTTCCTATCGATAATACTAGTCCATCA 57.603 37.037 6.58 0.00 0.00 3.07
6068 7062 5.646793 AGTCCATCATGAAATGTCTGTCTTG 59.353 40.000 0.00 0.00 46.80 3.02
6079 7073 3.706698 TGTCTGTCTTGTTCGAAGTGAG 58.293 45.455 0.00 0.00 0.00 3.51
6095 7089 5.120830 CGAAGTGAGTGGAAACTTCTATTGG 59.879 44.000 12.28 0.00 46.59 3.16
6115 7109 4.869215 TGGTTCGATCGTTACTGTTACAA 58.131 39.130 15.94 0.00 0.00 2.41
6116 7110 5.472148 TGGTTCGATCGTTACTGTTACAAT 58.528 37.500 15.94 0.00 0.00 2.71
6117 7111 6.619744 TGGTTCGATCGTTACTGTTACAATA 58.380 36.000 15.94 0.00 0.00 1.90
6151 7145 0.615331 ACAGATGCGACACTTGGGAT 59.385 50.000 0.00 0.00 0.00 3.85
6182 7176 2.223852 GGTTCGGCAGAGGAATAGAGAC 60.224 54.545 0.00 0.00 0.00 3.36
6191 7185 0.316854 GGAATAGAGACGCGTCGGTC 60.317 60.000 31.56 24.37 37.19 4.79
6223 7217 0.365523 CGCACGACGGTTATGAACAG 59.634 55.000 0.00 0.00 38.44 3.16
6234 7235 1.507140 TATGAACAGGGGCCCACTAG 58.493 55.000 27.72 14.01 0.00 2.57
6240 7241 1.082954 AGGGGCCCACTAGTCACAT 59.917 57.895 27.72 0.00 0.00 3.21
6262 7263 7.809331 CACATGTGCTAATTAATCACAACACTT 59.191 33.333 13.94 5.18 42.97 3.16
6263 7264 8.023128 ACATGTGCTAATTAATCACAACACTTC 58.977 33.333 18.39 0.00 42.97 3.01
6264 7265 6.908825 TGTGCTAATTAATCACAACACTTCC 58.091 36.000 14.36 0.00 37.73 3.46
6265 7266 6.714810 TGTGCTAATTAATCACAACACTTCCT 59.285 34.615 14.36 0.00 37.73 3.36
6272 7273 8.738645 ATTAATCACAACACTTCCTCTAATCC 57.261 34.615 0.00 0.00 0.00 3.01
6274 7275 4.894784 TCACAACACTTCCTCTAATCCAC 58.105 43.478 0.00 0.00 0.00 4.02
6281 7282 0.178068 TCCTCTAATCCACGCTTGGC 59.822 55.000 3.88 0.00 43.56 4.52
6285 7286 0.664761 CTAATCCACGCTTGGCCATG 59.335 55.000 6.09 11.02 43.56 3.66
6306 7307 8.449397 GCCATGTAGAATCATCTCATAAATGTC 58.551 37.037 0.00 0.00 37.10 3.06
6318 7320 4.858850 TCATAAATGTCCAGGCTTGTCAT 58.141 39.130 0.00 0.00 0.00 3.06
6378 7380 9.784680 CATTAAAATCTTTGATGAGAACCTGAG 57.215 33.333 0.00 0.00 0.00 3.35
6434 7436 8.514594 GTGATGTTTTGAACAAGGATATCTCAA 58.485 33.333 2.05 1.63 45.86 3.02
6435 7437 8.733458 TGATGTTTTGAACAAGGATATCTCAAG 58.267 33.333 2.05 0.00 45.86 3.02
6437 7439 8.690203 TGTTTTGAACAAGGATATCTCAAGAA 57.310 30.769 2.05 0.62 38.72 2.52
6438 7440 8.786898 TGTTTTGAACAAGGATATCTCAAGAAG 58.213 33.333 2.05 0.00 38.72 2.85
6439 7441 9.003658 GTTTTGAACAAGGATATCTCAAGAAGA 57.996 33.333 2.05 0.00 38.72 2.87
6440 7442 8.783833 TTTGAACAAGGATATCTCAAGAAGAG 57.216 34.615 2.05 0.00 46.14 2.85
6464 7466 2.353610 CCCCATGCTTGCAAGTCCC 61.354 63.158 26.55 11.58 0.00 4.46
6538 7540 8.871629 TTGATAAGAGGCTTGGTAAATAAACA 57.128 30.769 0.00 0.00 0.00 2.83
6540 7542 9.303116 TGATAAGAGGCTTGGTAAATAAACAAA 57.697 29.630 0.00 0.00 0.00 2.83
6561 7563 8.586570 ACAAACAAGATTTTCGCATGATTTAA 57.413 26.923 0.00 0.00 0.00 1.52
6590 7592 6.515832 CAAGACCTTTATTTCCTTGCTTTGT 58.484 36.000 0.00 0.00 0.00 2.83
6607 7609 4.096081 GCTTTGTTGAAGATCATGAGGGAG 59.904 45.833 0.09 0.00 37.57 4.30
6611 7613 5.879763 TGTTGAAGATCATGAGGGAGAAAA 58.120 37.500 0.09 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.151689 TCGTTCAAAGAAATAGAAGGCACG 59.848 41.667 0.00 0.00 0.00 5.34
9 10 6.647481 TCGGAATGTCGTTCAAAGAAATAGAA 59.353 34.615 7.10 0.00 38.64 2.10
10 11 6.160684 TCGGAATGTCGTTCAAAGAAATAGA 58.839 36.000 7.10 0.00 38.64 1.98
35 36 6.099413 TGGGCATCATCCTTTTGCAAATATTA 59.901 34.615 13.65 0.00 38.12 0.98
41 42 1.642112 TGGGCATCATCCTTTTGCAA 58.358 45.000 0.00 0.00 38.12 4.08
122 126 1.195448 CCAGAGTGTACGCAAGCAAAG 59.805 52.381 9.48 0.00 45.62 2.77
213 221 7.716768 TGAGAGAGATACAGTAGTATTCACG 57.283 40.000 0.00 0.00 40.95 4.35
249 260 2.263741 CCCTTGCAAGCGCTCACTT 61.264 57.895 21.43 0.00 39.64 3.16
263 274 0.482446 TTGGTCTTGCATGTCCCCTT 59.518 50.000 12.21 0.00 0.00 3.95
265 276 1.337118 TTTTGGTCTTGCATGTCCCC 58.663 50.000 12.21 6.21 0.00 4.81
332 345 1.202256 CCCGAATCGTCAGATCGTCAA 60.202 52.381 0.82 0.00 35.74 3.18
341 354 0.249120 AGCATGAACCCGAATCGTCA 59.751 50.000 0.82 0.00 0.00 4.35
344 357 0.861837 GCTAGCATGAACCCGAATCG 59.138 55.000 10.63 0.00 0.00 3.34
349 362 1.392589 AAATGGCTAGCATGAACCCG 58.607 50.000 18.24 0.00 0.00 5.28
350 363 2.760092 TGAAAATGGCTAGCATGAACCC 59.240 45.455 18.24 0.00 0.00 4.11
353 366 6.699366 TCAAATTGAAAATGGCTAGCATGAA 58.301 32.000 18.24 0.00 0.00 2.57
356 369 5.583457 GCTTCAAATTGAAAATGGCTAGCAT 59.417 36.000 18.24 5.44 35.73 3.79
357 370 4.931002 GCTTCAAATTGAAAATGGCTAGCA 59.069 37.500 18.24 2.97 35.73 3.49
358 371 5.173664 AGCTTCAAATTGAAAATGGCTAGC 58.826 37.500 15.52 6.04 34.00 3.42
359 372 8.937634 AATAGCTTCAAATTGAAAATGGCTAG 57.062 30.769 22.66 7.72 38.73 3.42
360 373 7.981225 GGAATAGCTTCAAATTGAAAATGGCTA 59.019 33.333 21.45 21.45 39.26 3.93
361 374 6.820152 GGAATAGCTTCAAATTGAAAATGGCT 59.180 34.615 19.27 19.27 37.71 4.75
362 375 6.820152 AGGAATAGCTTCAAATTGAAAATGGC 59.180 34.615 9.85 9.34 35.73 4.40
363 376 8.782339 AAGGAATAGCTTCAAATTGAAAATGG 57.218 30.769 9.85 0.00 35.73 3.16
365 378 9.649167 CTGAAGGAATAGCTTCAAATTGAAAAT 57.351 29.630 9.85 4.04 38.84 1.82
368 383 6.947733 TCCTGAAGGAATAGCTTCAAATTGAA 59.052 34.615 8.25 8.25 42.18 2.69
426 442 3.004752 ACCAACTCTCACTTTGCACTT 57.995 42.857 0.00 0.00 0.00 3.16
427 443 2.717639 ACCAACTCTCACTTTGCACT 57.282 45.000 0.00 0.00 0.00 4.40
438 454 4.938226 GCAATCTGCTTTAGTACCAACTCT 59.062 41.667 0.00 0.00 40.96 3.24
439 455 5.223225 GCAATCTGCTTTAGTACCAACTC 57.777 43.478 0.00 0.00 40.96 3.01
455 471 5.008331 TCTGCAGATCAAAAAGAGCAATCT 58.992 37.500 13.74 0.00 34.30 2.40
477 495 8.190122 TGGCACATATAATGACTGAAATTTGTC 58.810 33.333 0.00 0.00 0.00 3.18
538 568 2.425312 TGTGTGTTGCAACGGAAGAAAT 59.575 40.909 23.79 0.00 0.00 2.17
544 574 0.107897 AGACTGTGTGTTGCAACGGA 60.108 50.000 23.79 10.49 0.00 4.69
555 585 9.531158 AGGTTATACTAGTAAAAGAGACTGTGT 57.469 33.333 6.70 0.00 0.00 3.72
581 611 6.099159 TGGATCACAAATTCATTGCTTTCA 57.901 33.333 0.00 0.00 43.13 2.69
619 650 6.413783 TCGGGCAGTAAATGATAGTATCAA 57.586 37.500 16.61 0.00 43.50 2.57
627 658 3.214328 GTGGATTCGGGCAGTAAATGAT 58.786 45.455 0.00 0.00 0.00 2.45
638 669 4.760204 GGTGAATTATTAGGTGGATTCGGG 59.240 45.833 0.00 0.00 32.54 5.14
658 689 5.959527 CGTCGATTCTGATTTAATTGTGGTG 59.040 40.000 0.00 0.00 0.00 4.17
672 703 5.349824 TCTCATACATCTCGTCGATTCTG 57.650 43.478 0.00 0.00 0.00 3.02
690 721 0.392998 GCGGGCTGGATCTTTTCTCA 60.393 55.000 0.00 0.00 0.00 3.27
691 722 1.432270 CGCGGGCTGGATCTTTTCTC 61.432 60.000 0.00 0.00 0.00 2.87
693 724 1.024579 TTCGCGGGCTGGATCTTTTC 61.025 55.000 6.13 0.00 0.00 2.29
694 725 1.002624 TTCGCGGGCTGGATCTTTT 60.003 52.632 6.13 0.00 0.00 2.27
698 729 2.279784 CTCTTCGCGGGCTGGATC 60.280 66.667 6.13 0.00 0.00 3.36
737 776 0.841289 AAGGAAAGGTCGTCACCCAA 59.159 50.000 0.00 0.00 45.12 4.12
885 930 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
949 999 2.851588 GGGGAGGAGATGGGGCTC 60.852 72.222 0.00 0.00 0.00 4.70
991 1050 2.764128 GGAGACCATGGAGGCCGA 60.764 66.667 21.47 0.00 43.14 5.54
1293 1594 0.834261 TGTCCACGAACCTGATGGGA 60.834 55.000 0.00 0.00 38.76 4.37
1376 1677 2.168106 AGCATCTGTCACTAGAAGGCAG 59.832 50.000 13.07 13.07 35.05 4.85
1387 1688 3.851458 AATATCCAGCAGCATCTGTCA 57.149 42.857 0.00 0.00 33.43 3.58
1584 1891 3.615849 GCAGCCTTATACAATCTGCAC 57.384 47.619 7.55 0.00 46.64 4.57
1629 1936 5.828299 AGATGAGTAAACCGAAGAGAGAG 57.172 43.478 0.00 0.00 0.00 3.20
1774 2081 7.948278 ACAGTGTTTCTCTAGTGATGTAAAC 57.052 36.000 0.00 0.00 0.00 2.01
1974 2281 5.295152 ACTCGTACGGAAAGAGAACAATTT 58.705 37.500 16.52 0.00 37.18 1.82
1993 2300 3.243771 ACCTTGAGTGAAACAGGTACTCG 60.244 47.826 0.00 0.00 42.80 4.18
2006 2314 4.516321 TGTGAACATTGATGACCTTGAGTG 59.484 41.667 0.00 0.00 0.00 3.51
2172 2480 7.944061 ACACATTATGATACCATTGATGTTGG 58.056 34.615 0.00 0.00 36.79 3.77
2272 2581 9.529325 AACAGGAATTTTGAGCTAAAAACTAAC 57.471 29.630 11.32 3.08 41.29 2.34
2307 2616 1.434696 GGCCCGCACAAATGATGAG 59.565 57.895 0.00 0.00 0.00 2.90
2367 2855 4.280819 AGGGTCACATATCAAACAATGGG 58.719 43.478 0.00 0.00 0.00 4.00
2720 3288 9.053840 CAAGACTAGCAGATTACAATGATCAAT 57.946 33.333 0.00 0.00 0.00 2.57
2736 3304 3.451178 GGGGATAACTCACAAGACTAGCA 59.549 47.826 0.00 0.00 0.00 3.49
2841 3409 1.066002 CATTAGGCGCATTTCCTGTGG 59.934 52.381 10.83 0.00 35.82 4.17
2845 3413 2.128771 ACACATTAGGCGCATTTCCT 57.871 45.000 10.83 0.00 37.72 3.36
2847 3415 3.691498 GGTTACACATTAGGCGCATTTC 58.309 45.455 10.83 0.00 0.00 2.17
2893 3462 0.946700 TCGGTTTCGCTGATTTCGCA 60.947 50.000 0.00 0.00 36.13 5.10
2895 3464 0.787787 TGTCGGTTTCGCTGATTTCG 59.212 50.000 0.00 0.00 34.56 3.46
2948 3517 3.702330 CGTCTAACGGCATCTATCAACA 58.298 45.455 0.00 0.00 38.08 3.33
3005 3575 2.031191 ACAAGCACGACCAACTTAAACG 59.969 45.455 0.00 0.00 0.00 3.60
3020 3590 3.258372 AGATTCGAACAGGTAGACAAGCA 59.742 43.478 0.00 0.00 0.00 3.91
3024 3594 3.192844 GGTCAGATTCGAACAGGTAGACA 59.807 47.826 0.00 0.00 0.00 3.41
3117 3694 4.675038 AGTAGTAGTATATGGGCTGGTCC 58.325 47.826 0.00 0.00 0.00 4.46
3119 3696 5.602291 AGAGTAGTAGTATATGGGCTGGT 57.398 43.478 0.00 0.00 0.00 4.00
3147 3725 5.945784 GCATATATTGAAGGCAGGATACCAA 59.054 40.000 0.00 0.00 37.17 3.67
3261 3839 4.757149 AGAGATTTCAAGCAACCAGTACAC 59.243 41.667 0.00 0.00 0.00 2.90
3338 3917 2.189594 TCATCTGCCACCTGACAAAG 57.810 50.000 0.00 0.00 0.00 2.77
3879 4517 2.431782 ACACAAAGGTACACGGTACACT 59.568 45.455 13.76 7.52 0.00 3.55
3894 4532 5.648178 AAGCATGCATATTGAGACACAAA 57.352 34.783 21.98 0.00 42.03 2.83
4155 4811 4.611943 TCGATCCTTCTTAATCTCAAGCG 58.388 43.478 0.00 0.00 0.00 4.68
4238 4899 4.905429 TCGGAACCATTGATTTTGAGAGA 58.095 39.130 0.00 0.00 0.00 3.10
4323 4984 6.073222 GGGCTACATGTTACTCCAATTTATCG 60.073 42.308 2.30 0.00 0.00 2.92
4340 5001 5.431765 CATTCTTAAGACAGTGGGCTACAT 58.568 41.667 4.18 0.00 0.00 2.29
4435 5101 1.202348 GATGGCAACCTGGTTTACTGC 59.798 52.381 9.90 11.03 0.00 4.40
4436 5102 1.468520 CGATGGCAACCTGGTTTACTG 59.531 52.381 9.90 0.00 0.00 2.74
4474 5140 4.816925 CCCTAAGAGCAGCCTTTGTATTAC 59.183 45.833 1.97 0.00 0.00 1.89
4475 5141 4.473559 ACCCTAAGAGCAGCCTTTGTATTA 59.526 41.667 1.97 0.00 0.00 0.98
4476 5142 3.267031 ACCCTAAGAGCAGCCTTTGTATT 59.733 43.478 1.97 0.00 0.00 1.89
4477 5143 2.846827 ACCCTAAGAGCAGCCTTTGTAT 59.153 45.455 1.97 0.00 0.00 2.29
4761 5427 6.976636 AAGCAGAACTGTAAATAAGAGAGC 57.023 37.500 3.77 0.00 0.00 4.09
4881 5548 8.775527 TCTTACGTATTAAAGTCAAAATGCACA 58.224 29.630 0.00 0.00 0.00 4.57
4984 5652 1.379044 CCCTCCCAGTCATGGCAAC 60.379 63.158 0.00 0.00 46.19 4.17
5135 5820 2.727123 TTGTTTCAGCACCTTCTGGA 57.273 45.000 0.00 0.00 37.04 3.86
5179 5869 9.533983 CGATCAAACATGTGTATCAATATTAGC 57.466 33.333 0.00 0.00 0.00 3.09
5202 5892 0.034767 TCTACCCACGTGAGACCGAT 60.035 55.000 19.30 0.00 0.00 4.18
5229 5920 0.178990 ACAACCCCACTTGGCTCTTC 60.179 55.000 0.00 0.00 0.00 2.87
5342 6069 5.232463 GGTTTCAGAAATGCACATGTCAAT 58.768 37.500 0.00 0.00 0.00 2.57
5494 6221 6.993786 TTGTTGTATCTGATGCCGATAAAA 57.006 33.333 0.00 0.00 0.00 1.52
5643 6370 9.467796 TGATAATATTACCAAACACCAATGACA 57.532 29.630 0.00 0.00 0.00 3.58
5776 6503 2.775960 AGCATCACAGATCAGGGATTCA 59.224 45.455 0.00 0.00 0.00 2.57
5777 6504 3.401182 GAGCATCACAGATCAGGGATTC 58.599 50.000 0.00 0.00 33.17 2.52
5778 6505 2.106166 GGAGCATCACAGATCAGGGATT 59.894 50.000 0.00 0.00 36.25 3.01
5779 6506 1.698532 GGAGCATCACAGATCAGGGAT 59.301 52.381 0.00 0.00 36.25 3.85
5780 6507 1.126488 GGAGCATCACAGATCAGGGA 58.874 55.000 0.00 0.00 36.25 4.20
5783 6510 0.463204 ACGGGAGCATCACAGATCAG 59.537 55.000 0.00 0.00 39.81 2.90
5801 6528 3.924686 CGTTAGGAGTTACACATGGACAC 59.075 47.826 0.00 0.00 0.00 3.67
6022 7015 9.616156 GGACTAGTATTATCGATAGGAAGATCA 57.384 37.037 5.09 0.00 0.00 2.92
6026 7019 9.397280 TGATGGACTAGTATTATCGATAGGAAG 57.603 37.037 5.09 3.58 0.00 3.46
6034 7027 9.645059 ACATTTCATGATGGACTAGTATTATCG 57.355 33.333 0.00 0.00 0.00 2.92
6052 7046 5.760253 ACTTCGAACAAGACAGACATTTCAT 59.240 36.000 0.00 0.00 0.00 2.57
6068 7062 4.454403 GAAGTTTCCACTCACTTCGAAC 57.546 45.455 0.00 0.00 39.58 3.95
6079 7073 5.220416 CGATCGAACCAATAGAAGTTTCCAC 60.220 44.000 10.26 0.00 0.00 4.02
6115 7109 9.136323 TCGCATCTGTTCAGATGGTATATATAT 57.864 33.333 30.95 0.00 44.20 0.86
6116 7110 8.406297 GTCGCATCTGTTCAGATGGTATATATA 58.594 37.037 30.95 11.04 44.20 0.86
6117 7111 7.093771 TGTCGCATCTGTTCAGATGGTATATAT 60.094 37.037 30.95 3.68 44.20 0.86
6151 7145 0.172578 CTGCCGAACCGACACATCTA 59.827 55.000 0.00 0.00 0.00 1.98
6191 7185 2.100216 GTGCGGTTTGCCTATGCG 59.900 61.111 0.00 0.00 45.60 4.73
6219 7213 1.151899 TGACTAGTGGGCCCCTGTT 60.152 57.895 22.27 7.22 0.00 3.16
6223 7217 1.224592 CATGTGACTAGTGGGCCCC 59.775 63.158 22.27 11.17 0.00 5.80
6234 7235 7.271223 GTGTTGTGATTAATTAGCACATGTGAC 59.729 37.037 29.80 19.35 41.60 3.67
6240 7241 6.714810 AGGAAGTGTTGTGATTAATTAGCACA 59.285 34.615 15.26 15.26 40.44 4.57
6272 7273 1.331756 GATTCTACATGGCCAAGCGTG 59.668 52.381 10.96 5.90 0.00 5.34
6274 7275 1.667236 TGATTCTACATGGCCAAGCG 58.333 50.000 10.96 3.65 0.00 4.68
6281 7282 8.944029 GGACATTTATGAGATGATTCTACATGG 58.056 37.037 0.00 0.00 30.30 3.66
6285 7286 7.118971 GCCTGGACATTTATGAGATGATTCTAC 59.881 40.741 0.00 0.00 30.30 2.59
6306 7307 2.704464 TGAGATGATGACAAGCCTGG 57.296 50.000 0.00 0.00 0.00 4.45
6351 7353 9.519191 TCAGGTTCTCATCAAAGATTTTAATGA 57.481 29.630 0.00 0.00 0.00 2.57
6353 7355 9.745018 TCTCAGGTTCTCATCAAAGATTTTAAT 57.255 29.630 0.00 0.00 0.00 1.40
6370 7372 6.706270 TCTTTGTGAGTTTATGTCTCAGGTTC 59.294 38.462 0.00 0.00 41.66 3.62
6405 7407 9.028284 AGATATCCTTGTTCAAAACATCACATT 57.972 29.630 0.00 0.00 41.79 2.71
6415 7417 8.597167 TCTCTTCTTGAGATATCCTTGTTCAAA 58.403 33.333 0.00 0.00 46.03 2.69
6445 7447 2.353610 GGACTTGCAAGCATGGGGG 61.354 63.158 26.27 1.10 0.00 5.40
6448 7450 1.243342 TTCGGGACTTGCAAGCATGG 61.243 55.000 26.27 13.32 0.00 3.66
6449 7451 0.169672 CTTCGGGACTTGCAAGCATG 59.830 55.000 26.27 13.50 0.00 4.06
6501 7503 9.118300 CAAGCCTCTTATCAAATTCTACATTCT 57.882 33.333 0.00 0.00 0.00 2.40
6519 7521 6.969993 TGTTTGTTTATTTACCAAGCCTCT 57.030 33.333 0.00 0.00 0.00 3.69
6520 7522 7.430441 TCTTGTTTGTTTATTTACCAAGCCTC 58.570 34.615 0.00 0.00 0.00 4.70
6540 7542 8.170553 GCAAATTAAATCATGCGAAAATCTTGT 58.829 29.630 0.00 0.00 0.00 3.16
6582 7584 4.219070 CCCTCATGATCTTCAACAAAGCAA 59.781 41.667 0.00 0.00 34.76 3.91
6583 7585 3.760151 CCCTCATGATCTTCAACAAAGCA 59.240 43.478 0.00 0.00 34.76 3.91
6590 7592 5.707298 GTGTTTTCTCCCTCATGATCTTCAA 59.293 40.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.