Multiple sequence alignment - TraesCS4B01G268300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G268300 chr4B 100.000 2537 0 0 1 2537 542581729 542584265 0.000000e+00 4686.0
1 TraesCS4B01G268300 chr4A 89.062 2569 233 24 1 2537 28185191 28187743 0.000000e+00 3144.0
2 TraesCS4B01G268300 chr4A 80.357 448 58 15 140 571 692866574 692867007 1.890000e-81 313.0
3 TraesCS4B01G268300 chr4D 92.051 1409 107 3 543 1949 438681080 438682485 0.000000e+00 1977.0
4 TraesCS4B01G268300 chr4D 84.281 598 71 10 2 588 236401730 236402315 1.700000e-156 562.0
5 TraesCS4B01G268300 chr4D 84.505 555 59 11 2 546 438671660 438672197 8.040000e-145 523.0
6 TraesCS4B01G268300 chr7D 83.183 1332 187 17 1229 2537 612164032 612162715 0.000000e+00 1184.0
7 TraesCS4B01G268300 chr7D 88.304 342 33 4 1 335 313559475 313559134 1.090000e-108 403.0
8 TraesCS4B01G268300 chr2B 86.880 968 113 12 692 1651 752298860 752299821 0.000000e+00 1072.0
9 TraesCS4B01G268300 chr2B 81.639 610 81 18 1 600 318305334 318304746 6.350000e-131 477.0
10 TraesCS4B01G268300 chr2D 87.066 951 115 7 706 1651 616755767 616754820 0.000000e+00 1068.0
11 TraesCS4B01G268300 chr2D 83.833 600 69 20 1 587 157971678 157971094 1.720000e-151 545.0
12 TraesCS4B01G268300 chr7B 82.886 596 78 17 1 584 332746727 332746144 4.840000e-142 514.0
13 TraesCS4B01G268300 chr7B 81.962 632 80 18 1 600 204889516 204888887 2.910000e-139 505.0
14 TraesCS4B01G268300 chr3B 86.427 361 41 5 1 354 583322987 583323346 3.060000e-104 388.0
15 TraesCS4B01G268300 chr2A 85.175 371 47 5 1 364 157941812 157942181 8.570000e-100 374.0
16 TraesCS4B01G268300 chr2A 100.000 29 0 0 649 677 376841561 376841533 1.000000e-03 54.7
17 TraesCS4B01G268300 chr1D 78.644 590 89 22 31 600 209924032 209923460 8.630000e-95 357.0
18 TraesCS4B01G268300 chr6D 78.033 610 90 25 1 588 153882514 153883101 6.720000e-91 344.0
19 TraesCS4B01G268300 chr5B 77.758 553 87 20 66 600 200122287 200122821 8.820000e-80 307.0
20 TraesCS4B01G268300 chr1B 86.000 200 27 1 384 583 358588824 358588626 1.980000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G268300 chr4B 542581729 542584265 2536 False 4686 4686 100.000 1 2537 1 chr4B.!!$F1 2536
1 TraesCS4B01G268300 chr4A 28185191 28187743 2552 False 3144 3144 89.062 1 2537 1 chr4A.!!$F1 2536
2 TraesCS4B01G268300 chr4D 438681080 438682485 1405 False 1977 1977 92.051 543 1949 1 chr4D.!!$F3 1406
3 TraesCS4B01G268300 chr4D 236401730 236402315 585 False 562 562 84.281 2 588 1 chr4D.!!$F1 586
4 TraesCS4B01G268300 chr4D 438671660 438672197 537 False 523 523 84.505 2 546 1 chr4D.!!$F2 544
5 TraesCS4B01G268300 chr7D 612162715 612164032 1317 True 1184 1184 83.183 1229 2537 1 chr7D.!!$R2 1308
6 TraesCS4B01G268300 chr2B 752298860 752299821 961 False 1072 1072 86.880 692 1651 1 chr2B.!!$F1 959
7 TraesCS4B01G268300 chr2B 318304746 318305334 588 True 477 477 81.639 1 600 1 chr2B.!!$R1 599
8 TraesCS4B01G268300 chr2D 616754820 616755767 947 True 1068 1068 87.066 706 1651 1 chr2D.!!$R2 945
9 TraesCS4B01G268300 chr2D 157971094 157971678 584 True 545 545 83.833 1 587 1 chr2D.!!$R1 586
10 TraesCS4B01G268300 chr7B 332746144 332746727 583 True 514 514 82.886 1 584 1 chr7B.!!$R2 583
11 TraesCS4B01G268300 chr7B 204888887 204889516 629 True 505 505 81.962 1 600 1 chr7B.!!$R1 599
12 TraesCS4B01G268300 chr1D 209923460 209924032 572 True 357 357 78.644 31 600 1 chr1D.!!$R1 569
13 TraesCS4B01G268300 chr6D 153882514 153883101 587 False 344 344 78.033 1 588 1 chr6D.!!$F1 587
14 TraesCS4B01G268300 chr5B 200122287 200122821 534 False 307 307 77.758 66 600 1 chr5B.!!$F1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 123 1.334599 CCGGTCATTGAAACAACCACG 60.335 52.381 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 1966 0.455005 GAGGGGTCGTGTACTAGTGC 59.545 60.0 5.39 4.49 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 105 7.429636 TTGAAAACTAACAAACTAGATCCCG 57.570 36.000 0.00 0.00 0.00 5.14
117 123 1.334599 CCGGTCATTGAAACAACCACG 60.335 52.381 0.00 0.00 0.00 4.94
273 287 6.044404 ACATAGGAAGATGGGGGTTTATAGTG 59.956 42.308 0.00 0.00 0.00 2.74
299 313 2.682856 CCACCCAACATGTTTATCTCGG 59.317 50.000 8.77 5.87 0.00 4.63
301 315 2.307686 ACCCAACATGTTTATCTCGGGT 59.692 45.455 22.98 22.98 40.89 5.28
304 318 3.374058 CCAACATGTTTATCTCGGGTGTC 59.626 47.826 8.77 0.00 0.00 3.67
306 320 4.280436 ACATGTTTATCTCGGGTGTCAA 57.720 40.909 0.00 0.00 0.00 3.18
307 321 4.000988 ACATGTTTATCTCGGGTGTCAAC 58.999 43.478 0.00 0.00 0.00 3.18
308 322 3.755112 TGTTTATCTCGGGTGTCAACA 57.245 42.857 0.00 0.00 0.00 3.33
309 323 4.074627 TGTTTATCTCGGGTGTCAACAA 57.925 40.909 0.00 0.00 0.00 2.83
310 324 4.647611 TGTTTATCTCGGGTGTCAACAAT 58.352 39.130 0.00 0.00 0.00 2.71
404 444 6.147656 GCAATATGCTTGCCAACTAAAAAGTT 59.852 34.615 0.00 0.00 40.96 2.66
423 463 3.326297 AGTTCATAGAGCAGAATAGGGGC 59.674 47.826 0.00 0.00 0.00 5.80
435 475 5.739935 GCAGAATAGGGGCAAACATTATTGG 60.740 44.000 0.00 0.00 0.00 3.16
551 597 6.040209 TCTTAATGTAAAGGAACGCCACTA 57.960 37.500 0.00 0.00 36.29 2.74
555 601 6.861065 AATGTAAAGGAACGCCACTATATG 57.139 37.500 0.00 0.00 36.29 1.78
571 617 7.402054 CCACTATATGTTGCCCCTTATGATAA 58.598 38.462 0.00 0.00 0.00 1.75
584 630 8.573885 GCCCCTTATGATAACAACCTTTATTAC 58.426 37.037 0.00 0.00 0.00 1.89
595 641 6.740110 ACAACCTTTATTACGCAATTTGTCA 58.260 32.000 0.00 0.00 0.00 3.58
600 646 7.593644 ACCTTTATTACGCAATTTGTCACTTTC 59.406 33.333 0.00 0.00 0.00 2.62
667 713 9.060347 ACATGCTAATTTGTAGATACATTGGAG 57.940 33.333 0.00 0.00 35.89 3.86
747 793 7.921786 ATTTCAAGTGACTTTATCCGATGAA 57.078 32.000 0.00 0.00 0.00 2.57
899 946 8.294954 TGTTTGGAAAATAGTTACAACCTTCA 57.705 30.769 0.00 0.00 0.00 3.02
918 966 7.538575 ACCTTCATTGTTGTGTAGCATATTTC 58.461 34.615 0.00 0.00 0.00 2.17
925 973 7.624360 TGTTGTGTAGCATATTTCCTTTAGG 57.376 36.000 0.00 0.00 0.00 2.69
936 984 7.015584 GCATATTTCCTTTAGGGGACATTGATT 59.984 37.037 0.00 0.00 34.78 2.57
958 1006 3.985553 AAGGTTTTACTTTGGACCCCT 57.014 42.857 0.00 0.00 32.53 4.79
1019 1067 4.384056 ACCACAACTCATGTCTTTCTCAG 58.616 43.478 0.00 0.00 41.46 3.35
1031 1079 7.288621 TCATGTCTTTCTCAGGAGCAATATCTA 59.711 37.037 0.00 0.00 0.00 1.98
1114 1162 1.150135 ACAAAGAGAGGGAGGAGGTCA 59.850 52.381 0.00 0.00 0.00 4.02
1286 1334 2.027192 GGAACTGTTGCCAGGTATCTCA 60.027 50.000 0.00 0.00 39.26 3.27
1365 1413 3.153130 TGCGGATCAACCAAGAAATTGA 58.847 40.909 0.00 0.00 39.09 2.57
1393 1441 2.838202 GTTGTCCTTAGAGTCCATGGGA 59.162 50.000 13.02 0.00 0.00 4.37
1411 1459 0.971959 GATCAAGCATGCCAACCCCA 60.972 55.000 15.66 0.00 0.00 4.96
1444 1492 4.384940 TGTCTTCGATGGAATCACAAACA 58.615 39.130 0.00 0.00 45.97 2.83
1447 1495 5.625311 GTCTTCGATGGAATCACAAACAAAC 59.375 40.000 0.00 0.00 45.97 2.93
1497 1545 1.143684 GTCCATATGTGGGCCATGTCT 59.856 52.381 10.70 0.00 44.64 3.41
1498 1546 1.852309 TCCATATGTGGGCCATGTCTT 59.148 47.619 10.70 0.00 46.06 3.01
1547 1598 7.285629 TGTTGTAGTGAATAAAAATGGACACCA 59.714 33.333 0.00 0.00 38.19 4.17
1554 1605 7.275560 GTGAATAAAAATGGACACCACTTATGC 59.724 37.037 0.00 0.00 35.80 3.14
1572 1623 7.756272 CACTTATGCTGCAATGAATAAACTTGA 59.244 33.333 6.36 0.00 0.00 3.02
1635 1686 7.696872 GGAAAGAGTTGTAGTTGAACAAAGAAC 59.303 37.037 0.00 0.58 40.85 3.01
1740 1792 6.621316 TCTAAAAGAACAACAACGCCATTA 57.379 33.333 0.00 0.00 0.00 1.90
1755 1807 5.053145 ACGCCATTAAATGAGCAAACAAAA 58.947 33.333 0.00 0.00 0.00 2.44
1828 1880 4.347583 TGGCACAAAGGGATCTTCAAAAAT 59.652 37.500 0.00 0.00 31.92 1.82
1832 1884 6.366061 GCACAAAGGGATCTTCAAAAATACAC 59.634 38.462 0.00 0.00 31.82 2.90
1925 1977 4.006026 GAGAGTTCTCGCACTAGTACAC 57.994 50.000 0.00 0.00 32.78 2.90
1945 1997 1.691976 CGACCCCTCATTAGTGGCATA 59.308 52.381 0.00 0.00 0.00 3.14
1990 2042 1.276705 TGCATGAACGCCACCTACTTA 59.723 47.619 0.00 0.00 0.00 2.24
1991 2043 2.093181 TGCATGAACGCCACCTACTTAT 60.093 45.455 0.00 0.00 0.00 1.73
2010 2062 9.865321 CTACTTATGCTGGTAGTTTACAACTAA 57.135 33.333 0.00 0.00 44.95 2.24
2020 2072 7.874016 TGGTAGTTTACAACTAATAGTGTGTGG 59.126 37.037 14.19 0.00 44.95 4.17
2029 2081 5.876357 ACTAATAGTGTGTGGTCCAAATGT 58.124 37.500 0.00 0.00 0.00 2.71
2039 2091 4.218200 TGTGGTCCAAATGTTGCTAATGAG 59.782 41.667 0.00 0.00 0.00 2.90
2043 2095 6.663093 TGGTCCAAATGTTGCTAATGAGTAAT 59.337 34.615 0.00 0.00 29.38 1.89
2048 2100 9.113838 CCAAATGTTGCTAATGAGTAATCTACT 57.886 33.333 0.00 0.00 42.86 2.57
2054 2106 7.825331 TGCTAATGAGTAATCTACTAGCAGT 57.175 36.000 13.62 0.00 40.06 4.40
2067 2119 4.910458 ACTAGCAGTGTCCAACCTAAAT 57.090 40.909 0.00 0.00 0.00 1.40
2071 2123 3.146066 GCAGTGTCCAACCTAAATGTCA 58.854 45.455 0.00 0.00 0.00 3.58
2131 2217 2.937519 TCAACATAGTGGTGTTTGCCA 58.062 42.857 0.00 0.00 40.17 4.92
2134 2220 3.153369 ACATAGTGGTGTTTGCCATGA 57.847 42.857 0.00 0.00 41.08 3.07
2210 2298 4.630111 CAGCATGTTGTACCCAATTTTGT 58.370 39.130 0.65 0.00 32.11 2.83
2259 2347 7.256494 TGGGAAGCAAAATAGGATCAAAATT 57.744 32.000 0.00 0.00 0.00 1.82
2291 2379 5.568624 GCAATATTTTGTAGCCCAAGTGGTT 60.569 40.000 0.00 0.00 35.17 3.67
2329 2417 1.872952 GCCACCAAAACCAAATTCAGC 59.127 47.619 0.00 0.00 0.00 4.26
2330 2418 2.744494 GCCACCAAAACCAAATTCAGCA 60.744 45.455 0.00 0.00 0.00 4.41
2424 2512 5.175673 GCAATTCTGGAAACAAAGCACTTAC 59.824 40.000 0.00 0.00 42.06 2.34
2426 2514 3.892284 TCTGGAAACAAAGCACTTACCA 58.108 40.909 0.00 0.00 42.06 3.25
2438 2526 3.071023 AGCACTTACCACTAGAAAGCACA 59.929 43.478 0.00 0.00 0.00 4.57
2487 2575 6.884280 AGAATTTCAGGAATTTCACGTTCT 57.116 33.333 15.16 0.00 38.06 3.01
2499 2587 8.385111 GGAATTTCACGTTCTAATATTTCGACA 58.615 33.333 0.00 0.00 0.00 4.35
2500 2588 9.749490 GAATTTCACGTTCTAATATTTCGACAA 57.251 29.630 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 103 1.334599 CGTGGTTGTTTCAATGACCGG 60.335 52.381 0.00 0.00 34.90 5.28
99 105 3.365969 GGATCGTGGTTGTTTCAATGACC 60.366 47.826 0.00 0.00 0.00 4.02
117 123 7.444792 AGACTCTTTCTGCAAATATGATGGATC 59.555 37.037 0.00 0.00 31.12 3.36
152 160 9.554395 TGAGTATGTGAACAATCTAAACAAAGA 57.446 29.630 0.00 0.00 0.00 2.52
188 198 8.169977 TGAGTTTCAGCAATCATAAAAGACTT 57.830 30.769 0.00 0.00 0.00 3.01
195 205 4.705991 TGCCATGAGTTTCAGCAATCATAA 59.294 37.500 0.00 0.00 31.35 1.90
208 218 8.696043 TTTGCTCTATAAATATGCCATGAGTT 57.304 30.769 0.00 0.00 0.00 3.01
273 287 4.522789 AGATAAACATGTTGGGTGGTGAAC 59.477 41.667 12.82 0.00 0.00 3.18
299 313 7.538678 GTGATCATGAGTTTTATTGTTGACACC 59.461 37.037 0.00 0.00 0.00 4.16
301 315 7.448161 AGGTGATCATGAGTTTTATTGTTGACA 59.552 33.333 0.00 0.00 0.00 3.58
304 318 8.729756 TGTAGGTGATCATGAGTTTTATTGTTG 58.270 33.333 0.00 0.00 0.00 3.33
306 320 9.113838 GATGTAGGTGATCATGAGTTTTATTGT 57.886 33.333 0.00 0.00 0.00 2.71
307 321 8.562892 GGATGTAGGTGATCATGAGTTTTATTG 58.437 37.037 0.00 0.00 0.00 1.90
308 322 8.274322 TGGATGTAGGTGATCATGAGTTTTATT 58.726 33.333 0.00 0.00 0.00 1.40
309 323 7.805163 TGGATGTAGGTGATCATGAGTTTTAT 58.195 34.615 0.00 0.00 0.00 1.40
310 324 7.194112 TGGATGTAGGTGATCATGAGTTTTA 57.806 36.000 0.00 0.00 0.00 1.52
379 419 5.639082 ACTTTTTAGTTGGCAAGCATATTGC 59.361 36.000 0.00 4.02 45.46 3.56
382 422 6.991938 TGAACTTTTTAGTTGGCAAGCATAT 58.008 32.000 0.00 0.00 31.35 1.78
404 444 2.976440 TGCCCCTATTCTGCTCTATGA 58.024 47.619 0.00 0.00 0.00 2.15
423 463 7.830940 TTTATGCAAGAGCCAATAATGTTTG 57.169 32.000 0.00 0.00 41.13 2.93
516 562 7.609918 TCCTTTACATTAAGAGCTTGCACATAA 59.390 33.333 0.00 0.00 0.00 1.90
517 563 7.109501 TCCTTTACATTAAGAGCTTGCACATA 58.890 34.615 0.00 0.00 0.00 2.29
551 597 6.493458 GGTTGTTATCATAAGGGGCAACATAT 59.507 38.462 9.59 0.00 37.17 1.78
555 601 4.278310 AGGTTGTTATCATAAGGGGCAAC 58.722 43.478 0.00 0.00 35.42 4.17
571 617 6.639279 GTGACAAATTGCGTAATAAAGGTTGT 59.361 34.615 11.43 11.43 29.50 3.32
584 630 5.164012 TGTGTTTTGAAAGTGACAAATTGCG 60.164 36.000 0.00 0.00 37.15 4.85
674 720 9.406828 GACATTTGTATCTCGTGCATTATACTA 57.593 33.333 0.00 0.00 0.00 1.82
675 721 8.144478 AGACATTTGTATCTCGTGCATTATACT 58.856 33.333 0.00 0.00 0.00 2.12
768 814 3.521560 TGCTACACGACAATGAAGGATC 58.478 45.455 0.00 0.00 0.00 3.36
899 946 8.686334 CCTAAAGGAAATATGCTACACAACAAT 58.314 33.333 0.00 0.00 37.39 2.71
918 966 6.194967 ACCTTTAATCAATGTCCCCTAAAGG 58.805 40.000 14.07 14.07 45.66 3.11
925 973 9.203421 CAAAGTAAAACCTTTAATCAATGTCCC 57.797 33.333 0.00 0.00 33.00 4.46
936 984 5.134850 AGAGGGGTCCAAAGTAAAACCTTTA 59.865 40.000 0.00 0.00 33.00 1.85
958 1006 7.079700 TGGTGACCCTTTATATAGATGGAAGA 58.920 38.462 0.00 0.00 0.00 2.87
1019 1067 9.855021 GAAGTATCTTTCTCTAGATATTGCTCC 57.145 37.037 0.00 0.00 38.87 4.70
1031 1079 8.058847 ACCAGATGACTAGAAGTATCTTTCTCT 58.941 37.037 0.00 0.00 38.35 3.10
1055 1103 8.778358 GGATATGATCTAAAGTGATTTGTGACC 58.222 37.037 0.00 0.00 0.00 4.02
1094 1142 1.150135 TGACCTCCTCCCTCTCTTTGT 59.850 52.381 0.00 0.00 0.00 2.83
1114 1162 1.913762 CTCGACCTTCCCCACACCT 60.914 63.158 0.00 0.00 0.00 4.00
1286 1334 8.267620 TGGTTAAGATCCTCTACATTCATGAT 57.732 34.615 0.00 0.00 0.00 2.45
1365 1413 4.041198 TGGACTCTAAGGACAACCGATTTT 59.959 41.667 0.00 0.00 41.83 1.82
1393 1441 1.078891 TGGGGTTGGCATGCTTGAT 59.921 52.632 18.92 0.00 0.00 2.57
1411 1459 1.882912 TCGAAGACAAATGCAGCTGT 58.117 45.000 16.64 3.23 0.00 4.40
1444 1492 7.120138 TGGAAGTTTCACTACTTTTCTTCGTTT 59.880 33.333 0.00 0.00 38.43 3.60
1447 1495 6.598753 TGGAAGTTTCACTACTTTTCTTCG 57.401 37.500 0.00 0.00 38.43 3.79
1497 1545 7.979537 ACATAAGCACTATATCTCAAACGACAA 59.020 33.333 0.00 0.00 0.00 3.18
1498 1546 7.489160 ACATAAGCACTATATCTCAAACGACA 58.511 34.615 0.00 0.00 0.00 4.35
1533 1581 6.266168 CAGCATAAGTGGTGTCCATTTTTA 57.734 37.500 2.19 0.00 46.17 1.52
1547 1598 7.829725 TCAAGTTTATTCATTGCAGCATAAGT 58.170 30.769 0.00 0.00 0.00 2.24
1554 1605 8.752766 ACTTCAATCAAGTTTATTCATTGCAG 57.247 30.769 0.00 0.00 43.38 4.41
1600 1651 8.160765 TCAACTACAACTCTTTCCATGGATAAA 58.839 33.333 17.06 7.01 0.00 1.40
1719 1771 7.921214 TCATTTAATGGCGTTGTTGTTCTTTTA 59.079 29.630 5.02 0.00 0.00 1.52
1727 1779 3.573598 TGCTCATTTAATGGCGTTGTTG 58.426 40.909 5.02 0.00 31.73 3.33
1732 1784 3.932545 TGTTTGCTCATTTAATGGCGT 57.067 38.095 5.02 0.00 31.73 5.68
1800 1852 3.243359 AGATCCCTTTGTGCCAAAGAA 57.757 42.857 21.94 13.46 0.00 2.52
1801 1853 2.978156 AGATCCCTTTGTGCCAAAGA 57.022 45.000 21.94 9.44 0.00 2.52
1802 1854 2.892852 TGAAGATCCCTTTGTGCCAAAG 59.107 45.455 16.37 16.37 31.62 2.77
1855 1907 2.061848 TGAACAACAATCAGGGGGAGA 58.938 47.619 0.00 0.00 0.00 3.71
1914 1966 0.455005 GAGGGGTCGTGTACTAGTGC 59.545 60.000 5.39 4.49 0.00 4.40
1945 1997 6.893005 AGAACACTTCTACTAGGCACTTAGAT 59.107 38.462 0.00 0.00 37.97 1.98
2010 2062 3.255642 GCAACATTTGGACCACACACTAT 59.744 43.478 0.00 0.00 0.00 2.12
2020 2072 7.989826 AGATTACTCATTAGCAACATTTGGAC 58.010 34.615 0.00 0.00 0.00 4.02
2029 2081 8.138074 CACTGCTAGTAGATTACTCATTAGCAA 58.862 37.037 15.37 0.32 38.11 3.91
2039 2091 5.127356 AGGTTGGACACTGCTAGTAGATTAC 59.873 44.000 15.37 2.01 0.00 1.89
2043 2095 3.170991 AGGTTGGACACTGCTAGTAGA 57.829 47.619 15.37 0.00 0.00 2.59
2048 2100 4.041075 TGACATTTAGGTTGGACACTGCTA 59.959 41.667 0.00 0.00 0.00 3.49
2131 2217 0.604578 GCCACCAGTGTGCAAATCAT 59.395 50.000 0.00 0.00 41.35 2.45
2134 2220 0.829333 TTTGCCACCAGTGTGCAAAT 59.171 45.000 23.53 0.00 44.12 2.32
2182 2270 1.067635 GGGTACAACATGCTGCCAAAG 60.068 52.381 0.00 0.00 0.00 2.77
2259 2347 7.003482 TGGGCTACAAAATATTGCATGATAGA 58.997 34.615 0.00 0.00 40.34 1.98
2291 2379 0.037139 GCTCAAAATGGTGCCATGCA 60.037 50.000 4.26 0.00 36.68 3.96
2385 2473 6.491745 TCCAGAATTGCTAGGTACTATGAGAG 59.508 42.308 0.00 0.00 41.70 3.20
2388 2476 7.093068 TGTTTCCAGAATTGCTAGGTACTATGA 60.093 37.037 0.00 0.00 41.70 2.15
2424 2512 2.787473 TCCCATGTGCTTTCTAGTGG 57.213 50.000 0.00 0.00 0.00 4.00
2426 2514 4.472833 AGATCTTCCCATGTGCTTTCTAGT 59.527 41.667 0.00 0.00 0.00 2.57
2438 2526 2.774173 AGCCTGAGAAGATCTTCCCAT 58.226 47.619 28.01 13.00 40.33 4.00
2455 2543 4.989279 TTCCTGAAATTCTATGCAAGCC 57.011 40.909 0.00 0.00 0.00 4.35
2500 2588 3.127548 GCCAAGACATGAACAATCGATGT 59.872 43.478 0.00 0.00 46.82 3.06
2509 2597 2.358898 AGTTGTGTGCCAAGACATGAAC 59.641 45.455 0.00 0.00 32.51 3.18
2512 2600 1.267806 GGAGTTGTGTGCCAAGACATG 59.732 52.381 0.00 0.00 32.51 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.