Multiple sequence alignment - TraesCS4B01G268000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G268000 chr4B 100.000 4754 0 0 1 4754 541899448 541904201 0.000000e+00 8780.0
1 TraesCS4B01G268000 chr4B 95.502 289 8 1 537 820 541899696 541899984 1.560000e-124 457.0
2 TraesCS4B01G268000 chr4A 91.543 3784 225 43 822 4536 27567953 27571710 0.000000e+00 5127.0
3 TraesCS4B01G268000 chr4A 88.732 142 13 2 107 246 327753302 327753442 2.270000e-38 171.0
4 TraesCS4B01G268000 chr4A 84.971 173 19 7 89 258 503630579 503630411 8.180000e-38 169.0
5 TraesCS4B01G268000 chr4A 93.220 59 2 2 822 878 27557301 27557359 8.480000e-13 86.1
6 TraesCS4B01G268000 chr4D 90.595 3817 244 59 822 4573 438141854 438145620 0.000000e+00 4953.0
7 TraesCS4B01G268000 chr5B 92.334 574 39 1 251 819 557797620 557797047 0.000000e+00 811.0
8 TraesCS4B01G268000 chr5B 91.603 131 11 0 119 249 560436870 560436740 1.050000e-41 182.0
9 TraesCS4B01G268000 chr6B 89.134 589 48 3 248 820 414469493 414470081 0.000000e+00 719.0
10 TraesCS4B01G268000 chr6B 87.755 147 16 2 106 251 515749071 515749216 2.270000e-38 171.0
11 TraesCS4B01G268000 chr7B 84.095 591 81 8 251 833 719065407 719064822 4.160000e-155 558.0
12 TraesCS4B01G268000 chr5A 97.973 296 6 0 247 542 546794067 546793772 9.120000e-142 514.0
13 TraesCS4B01G268000 chr5A 95.848 289 7 1 537 820 546794065 546793777 3.350000e-126 462.0
14 TraesCS4B01G268000 chr3B 97.938 291 6 0 249 539 113928351 113928641 5.490000e-139 505.0
15 TraesCS4B01G268000 chr3B 95.517 290 8 1 536 820 113928350 113928639 4.340000e-125 459.0
16 TraesCS4B01G268000 chr3B 91.617 334 17 7 496 820 805051497 805051828 7.250000e-123 451.0
17 TraesCS4B01G268000 chr1B 97.611 293 7 0 248 540 661632249 661632541 1.970000e-138 503.0
18 TraesCS4B01G268000 chr1B 94.333 300 11 2 531 824 661632243 661632542 5.610000e-124 455.0
19 TraesCS4B01G268000 chr2A 97.909 287 6 0 251 537 685744211 685744497 9.190000e-137 497.0
20 TraesCS4B01G268000 chr3A 97.260 292 8 0 249 540 370233077 370232786 3.300000e-136 496.0
21 TraesCS4B01G268000 chr3A 96.918 292 9 0 249 540 719649985 719649694 1.540000e-134 490.0
22 TraesCS4B01G268000 chr3A 95.222 293 9 1 537 824 370233077 370232785 4.340000e-125 459.0
23 TraesCS4B01G268000 chr2D 90.840 131 12 0 115 245 478730687 478730557 4.890000e-40 176.0
24 TraesCS4B01G268000 chr2D 90.769 130 12 0 116 245 62293426 62293297 1.760000e-39 174.0
25 TraesCS4B01G268000 chr5D 90.152 132 13 0 118 249 445810775 445810644 6.330000e-39 172.0
26 TraesCS4B01G268000 chr1D 90.226 133 12 1 114 246 158107777 158107646 6.330000e-39 172.0
27 TraesCS4B01G268000 chr7D 88.028 142 16 1 104 245 567712440 567712580 2.940000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G268000 chr4B 541899448 541904201 4753 False 8780 8780 100.000 1 4754 1 chr4B.!!$F1 4753
1 TraesCS4B01G268000 chr4A 27567953 27571710 3757 False 5127 5127 91.543 822 4536 1 chr4A.!!$F2 3714
2 TraesCS4B01G268000 chr4D 438141854 438145620 3766 False 4953 4953 90.595 822 4573 1 chr4D.!!$F1 3751
3 TraesCS4B01G268000 chr5B 557797047 557797620 573 True 811 811 92.334 251 819 1 chr5B.!!$R1 568
4 TraesCS4B01G268000 chr6B 414469493 414470081 588 False 719 719 89.134 248 820 1 chr6B.!!$F1 572
5 TraesCS4B01G268000 chr7B 719064822 719065407 585 True 558 558 84.095 251 833 1 chr7B.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.036765 GTGTGGAATGCGACTACCCA 60.037 55.0 0.0 0.0 0.0 4.51 F
75 76 0.249120 TGTGGAATGCGACTACCCAG 59.751 55.0 0.0 0.0 0.0 4.45 F
1300 1326 0.033306 GGTAAGTCGGTCCCTCTCCT 60.033 60.0 0.0 0.0 0.0 3.69 F
1464 1491 0.615331 TTGCCTCCTGATCTTTCGCT 59.385 50.0 0.0 0.0 0.0 4.93 F
3287 3351 0.516877 TCGCTTGCACAGTTGTATGC 59.483 50.0 0.0 0.0 42.4 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1310 0.033894 GAGAGGAGAGGGACCGACTT 60.034 60.000 0.0 0.0 0.00 3.01 R
1706 1735 0.671472 CGCAGTCAGCAGATCACCAA 60.671 55.000 0.0 0.0 46.13 3.67 R
3266 3330 0.790207 ATACAACTGTGCAAGCGACG 59.210 50.000 0.0 0.0 0.00 5.12 R
3435 3502 1.070041 ACGTCAGTCTCGTCTTTCGTC 60.070 52.381 0.0 0.0 36.85 4.20 R
4704 4799 0.033601 TTTTCCACGCCCTATGCCAT 60.034 50.000 0.0 0.0 36.24 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.435256 AGGGGATATCAAACGGAGGG 58.565 55.000 4.83 0.00 0.00 4.30
20 21 0.400594 GGGGATATCAAACGGAGGGG 59.599 60.000 4.83 0.00 0.00 4.79
21 22 0.400594 GGGATATCAAACGGAGGGGG 59.599 60.000 4.83 0.00 0.00 5.40
49 50 3.525059 CGAAGCAAAGACAACGCAA 57.475 47.368 0.00 0.00 0.00 4.85
50 51 2.036556 CGAAGCAAAGACAACGCAAT 57.963 45.000 0.00 0.00 0.00 3.56
51 52 1.710249 CGAAGCAAAGACAACGCAATG 59.290 47.619 0.00 0.00 0.00 2.82
52 53 2.053627 GAAGCAAAGACAACGCAATGG 58.946 47.619 0.00 0.00 0.00 3.16
53 54 1.317613 AGCAAAGACAACGCAATGGA 58.682 45.000 0.00 0.00 0.00 3.41
54 55 1.001378 AGCAAAGACAACGCAATGGAC 60.001 47.619 0.00 0.00 0.00 4.02
55 56 1.673760 CAAAGACAACGCAATGGACG 58.326 50.000 0.00 0.00 0.00 4.79
57 58 0.586319 AAGACAACGCAATGGACGTG 59.414 50.000 0.00 0.00 44.30 4.49
58 59 0.531974 AGACAACGCAATGGACGTGT 60.532 50.000 0.00 0.00 44.30 4.49
59 60 0.384230 GACAACGCAATGGACGTGTG 60.384 55.000 0.00 0.00 44.30 3.82
60 61 1.082169 CAACGCAATGGACGTGTGG 60.082 57.895 0.00 0.00 44.30 4.17
61 62 1.227704 AACGCAATGGACGTGTGGA 60.228 52.632 0.00 0.00 44.30 4.02
62 63 0.816018 AACGCAATGGACGTGTGGAA 60.816 50.000 0.00 0.00 44.30 3.53
63 64 0.605319 ACGCAATGGACGTGTGGAAT 60.605 50.000 0.00 0.00 43.23 3.01
64 65 0.179192 CGCAATGGACGTGTGGAATG 60.179 55.000 0.00 0.00 0.00 2.67
65 66 0.456653 GCAATGGACGTGTGGAATGC 60.457 55.000 0.00 0.00 0.00 3.56
66 67 0.179192 CAATGGACGTGTGGAATGCG 60.179 55.000 0.00 0.00 0.00 4.73
67 68 0.321210 AATGGACGTGTGGAATGCGA 60.321 50.000 0.00 0.00 0.00 5.10
68 69 1.019278 ATGGACGTGTGGAATGCGAC 61.019 55.000 0.00 0.00 0.00 5.19
69 70 1.374252 GGACGTGTGGAATGCGACT 60.374 57.895 0.00 0.00 0.00 4.18
70 71 0.108992 GGACGTGTGGAATGCGACTA 60.109 55.000 0.00 0.00 0.00 2.59
71 72 0.989890 GACGTGTGGAATGCGACTAC 59.010 55.000 0.00 0.00 0.00 2.73
72 73 0.389426 ACGTGTGGAATGCGACTACC 60.389 55.000 0.00 0.00 0.00 3.18
73 74 1.082117 CGTGTGGAATGCGACTACCC 61.082 60.000 0.00 0.00 0.00 3.69
74 75 0.036765 GTGTGGAATGCGACTACCCA 60.037 55.000 0.00 0.00 0.00 4.51
75 76 0.249120 TGTGGAATGCGACTACCCAG 59.751 55.000 0.00 0.00 0.00 4.45
76 77 0.462047 GTGGAATGCGACTACCCAGG 60.462 60.000 0.00 0.00 0.00 4.45
77 78 1.146263 GGAATGCGACTACCCAGGG 59.854 63.158 2.85 2.85 0.00 4.45
78 79 1.523938 GAATGCGACTACCCAGGGC 60.524 63.158 4.91 0.00 0.00 5.19
79 80 1.972660 GAATGCGACTACCCAGGGCT 61.973 60.000 4.91 0.00 0.00 5.19
80 81 2.257409 AATGCGACTACCCAGGGCTG 62.257 60.000 4.91 0.22 0.00 4.85
94 95 4.424711 GCTGGGCCGGTCATCCAA 62.425 66.667 15.16 0.00 0.00 3.53
95 96 2.354729 CTGGGCCGGTCATCCAAA 59.645 61.111 9.07 0.00 0.00 3.28
96 97 1.304052 CTGGGCCGGTCATCCAAAA 60.304 57.895 9.07 0.00 0.00 2.44
97 98 0.684153 CTGGGCCGGTCATCCAAAAT 60.684 55.000 9.07 0.00 0.00 1.82
98 99 0.626382 TGGGCCGGTCATCCAAAATA 59.374 50.000 9.07 0.00 0.00 1.40
99 100 1.006043 TGGGCCGGTCATCCAAAATAA 59.994 47.619 9.07 0.00 0.00 1.40
100 101 1.407618 GGGCCGGTCATCCAAAATAAC 59.592 52.381 9.07 0.00 0.00 1.89
101 102 2.096248 GGCCGGTCATCCAAAATAACA 58.904 47.619 0.00 0.00 0.00 2.41
102 103 2.099098 GGCCGGTCATCCAAAATAACAG 59.901 50.000 0.00 0.00 0.00 3.16
103 104 2.752903 GCCGGTCATCCAAAATAACAGT 59.247 45.455 1.90 0.00 0.00 3.55
104 105 3.427503 GCCGGTCATCCAAAATAACAGTG 60.428 47.826 1.90 0.00 0.00 3.66
105 106 4.006989 CCGGTCATCCAAAATAACAGTGA 58.993 43.478 0.00 0.00 0.00 3.41
106 107 4.640201 CCGGTCATCCAAAATAACAGTGAT 59.360 41.667 0.00 0.00 0.00 3.06
107 108 5.125417 CCGGTCATCCAAAATAACAGTGATT 59.875 40.000 0.00 0.00 0.00 2.57
108 109 6.350110 CCGGTCATCCAAAATAACAGTGATTT 60.350 38.462 0.00 0.00 0.00 2.17
109 110 6.747280 CGGTCATCCAAAATAACAGTGATTTC 59.253 38.462 0.00 0.00 0.00 2.17
110 111 7.574779 CGGTCATCCAAAATAACAGTGATTTCA 60.575 37.037 0.00 0.00 0.00 2.69
111 112 8.253113 GGTCATCCAAAATAACAGTGATTTCAT 58.747 33.333 0.00 0.00 0.00 2.57
112 113 9.079833 GTCATCCAAAATAACAGTGATTTCATG 57.920 33.333 0.00 1.26 0.00 3.07
113 114 8.805175 TCATCCAAAATAACAGTGATTTCATGT 58.195 29.630 0.00 0.00 0.00 3.21
124 125 7.727181 ACAGTGATTTCATGTATAGTACTCCC 58.273 38.462 0.00 0.00 0.00 4.30
125 126 7.155328 CAGTGATTTCATGTATAGTACTCCCC 58.845 42.308 0.00 0.00 0.00 4.81
126 127 6.270231 AGTGATTTCATGTATAGTACTCCCCC 59.730 42.308 0.00 0.00 0.00 5.40
144 145 4.206477 CCCCCATTCCAAAATTCTTGTC 57.794 45.455 0.00 0.00 0.00 3.18
145 146 3.840078 CCCCCATTCCAAAATTCTTGTCT 59.160 43.478 0.00 0.00 0.00 3.41
146 147 4.286808 CCCCCATTCCAAAATTCTTGTCTT 59.713 41.667 0.00 0.00 0.00 3.01
147 148 5.483583 CCCCCATTCCAAAATTCTTGTCTTA 59.516 40.000 0.00 0.00 0.00 2.10
148 149 6.351286 CCCCCATTCCAAAATTCTTGTCTTAG 60.351 42.308 0.00 0.00 0.00 2.18
149 150 6.437162 CCCCATTCCAAAATTCTTGTCTTAGA 59.563 38.462 0.00 0.00 0.00 2.10
150 151 7.124750 CCCCATTCCAAAATTCTTGTCTTAGAT 59.875 37.037 0.00 0.00 0.00 1.98
151 152 8.534496 CCCATTCCAAAATTCTTGTCTTAGATT 58.466 33.333 0.00 0.00 0.00 2.40
152 153 9.933723 CCATTCCAAAATTCTTGTCTTAGATTT 57.066 29.630 0.00 0.00 0.00 2.17
155 156 9.965824 TTCCAAAATTCTTGTCTTAGATTTGTC 57.034 29.630 0.00 0.00 28.79 3.18
156 157 9.354673 TCCAAAATTCTTGTCTTAGATTTGTCT 57.645 29.630 0.00 0.00 28.79 3.41
232 233 8.197439 AGACAAAACTAAGACAAGAATTTTGGG 58.803 33.333 10.86 0.00 39.95 4.12
233 234 8.073467 ACAAAACTAAGACAAGAATTTTGGGA 57.927 30.769 10.86 0.00 39.95 4.37
234 235 8.536175 ACAAAACTAAGACAAGAATTTTGGGAA 58.464 29.630 10.86 0.00 39.95 3.97
235 236 9.034544 CAAAACTAAGACAAGAATTTTGGGAAG 57.965 33.333 0.00 0.00 34.77 3.46
236 237 8.533569 AAACTAAGACAAGAATTTTGGGAAGA 57.466 30.769 5.68 0.00 0.00 2.87
237 238 8.533569 AACTAAGACAAGAATTTTGGGAAGAA 57.466 30.769 5.68 0.00 0.00 2.52
238 239 8.171164 ACTAAGACAAGAATTTTGGGAAGAAG 57.829 34.615 5.68 0.00 0.00 2.85
239 240 6.410942 AAGACAAGAATTTTGGGAAGAAGG 57.589 37.500 5.68 0.00 0.00 3.46
240 241 5.705400 AGACAAGAATTTTGGGAAGAAGGA 58.295 37.500 5.68 0.00 0.00 3.36
241 242 6.136155 AGACAAGAATTTTGGGAAGAAGGAA 58.864 36.000 5.68 0.00 0.00 3.36
242 243 6.266330 AGACAAGAATTTTGGGAAGAAGGAAG 59.734 38.462 5.68 0.00 0.00 3.46
243 244 5.899547 ACAAGAATTTTGGGAAGAAGGAAGT 59.100 36.000 5.68 0.00 0.00 3.01
244 245 7.066781 ACAAGAATTTTGGGAAGAAGGAAGTA 58.933 34.615 5.68 0.00 0.00 2.24
245 246 7.014326 ACAAGAATTTTGGGAAGAAGGAAGTAC 59.986 37.037 5.68 0.00 0.00 2.73
246 247 6.610830 AGAATTTTGGGAAGAAGGAAGTACA 58.389 36.000 0.00 0.00 0.00 2.90
249 250 8.950007 AATTTTGGGAAGAAGGAAGTACATTA 57.050 30.769 0.00 0.00 0.00 1.90
307 308 3.520691 AGCCATTGCCATGTCATCTAT 57.479 42.857 0.00 0.00 38.69 1.98
321 322 8.147058 CCATGTCATCTATAGCCCATCTTATAC 58.853 40.741 0.00 0.00 0.00 1.47
326 327 7.851451 TCATCTATAGCCCATCTTATACCCAAT 59.149 37.037 0.00 0.00 0.00 3.16
455 456 1.762708 CTCGCTTCCCTTCTCTCTCT 58.237 55.000 0.00 0.00 0.00 3.10
537 538 6.936279 ACTCAGCTTTATTGTACTTGCTCTA 58.064 36.000 0.00 0.00 0.00 2.43
820 837 7.081526 ACTCAGCTTTATTGTATTTGCTCTG 57.918 36.000 0.00 0.00 0.00 3.35
854 872 7.227711 TGAAAATAACTGAATCGAGACAAACCA 59.772 33.333 0.00 0.00 0.00 3.67
903 922 2.738846 CGGCCGATGAATCTCTATTTGG 59.261 50.000 24.07 0.00 0.00 3.28
936 962 5.931441 ACATCAAAAGAACCTTCTCTTCG 57.069 39.130 0.00 0.00 36.28 3.79
940 966 5.671493 TCAAAAGAACCTTCTCTTCGTCTT 58.329 37.500 0.00 0.00 36.28 3.01
941 967 5.753921 TCAAAAGAACCTTCTCTTCGTCTTC 59.246 40.000 0.00 0.00 36.28 2.87
1242 1268 1.227263 CCATAGCGACGGGTTCCTG 60.227 63.158 0.00 0.00 0.00 3.86
1296 1322 2.421399 CGGGGTAAGTCGGTCCCTC 61.421 68.421 0.00 0.00 40.88 4.30
1297 1323 1.001376 GGGGTAAGTCGGTCCCTCT 59.999 63.158 0.00 0.00 40.88 3.69
1298 1324 1.042003 GGGGTAAGTCGGTCCCTCTC 61.042 65.000 0.00 0.00 40.88 3.20
1299 1325 1.042003 GGGTAAGTCGGTCCCTCTCC 61.042 65.000 0.00 0.00 38.29 3.71
1300 1326 0.033306 GGTAAGTCGGTCCCTCTCCT 60.033 60.000 0.00 0.00 0.00 3.69
1301 1327 1.391577 GTAAGTCGGTCCCTCTCCTC 58.608 60.000 0.00 0.00 0.00 3.71
1305 1331 1.619975 TCGGTCCCTCTCCTCTCCT 60.620 63.158 0.00 0.00 0.00 3.69
1464 1491 0.615331 TTGCCTCCTGATCTTTCGCT 59.385 50.000 0.00 0.00 0.00 4.93
1551 1580 6.373186 AACTTTTAAACTGCTGTACTGGAC 57.627 37.500 0.00 0.00 0.00 4.02
1568 1597 4.846940 ACTGGACCATCTTAGAGGAAAGTT 59.153 41.667 0.00 0.00 0.00 2.66
1574 1603 5.998363 ACCATCTTAGAGGAAAGTTTGTGTC 59.002 40.000 0.00 0.00 0.00 3.67
1593 1622 6.299141 TGTGTCTCCTCTCAAAGCTTTATTT 58.701 36.000 12.25 0.00 0.00 1.40
1609 1638 7.623630 AGCTTTATTTGGCCTTCAATAATTGT 58.376 30.769 3.32 0.00 34.98 2.71
1698 1727 1.001048 CACACAGCCACCATCAAAGTG 60.001 52.381 0.00 0.00 34.91 3.16
1701 1730 2.361757 CACAGCCACCATCAAAGTGAAA 59.638 45.455 0.00 0.00 37.42 2.69
1706 1735 4.529377 AGCCACCATCAAAGTGAAATGAAT 59.471 37.500 0.00 0.00 37.42 2.57
1736 1765 2.036733 TGCTGACTGCGTTAGGTAGTTT 59.963 45.455 0.00 0.00 42.06 2.66
1927 1957 3.042887 GGTGTCGCAGTTTTGATTGTTC 58.957 45.455 0.00 0.00 0.00 3.18
2061 2092 4.584325 TGTGGCATAAGAATAATTCCTGGC 59.416 41.667 0.00 0.00 33.31 4.85
2313 2348 4.616181 ACGTATCAGCAAAGCCATAAAC 57.384 40.909 0.00 0.00 0.00 2.01
2432 2491 1.211212 TGGACAGAATGCTGATCCCAG 59.789 52.381 8.02 0.00 45.17 4.45
2503 2563 1.986882 AGGAACACCTTGCTCCTTTG 58.013 50.000 0.00 0.00 39.81 2.77
2581 2644 9.661563 ATTTTCTGACGTGGTATAAGTGATTTA 57.338 29.630 0.00 0.00 0.00 1.40
2605 2668 6.751514 TGTCAAAATAACGATACATTGGCT 57.248 33.333 0.00 0.00 0.00 4.75
2639 2702 3.682377 CCGTTCACTGTACATATGTTGCA 59.318 43.478 14.77 12.37 0.00 4.08
3073 3137 3.873910 ACTGCTTAGTGAACAACTGTGT 58.126 40.909 0.00 0.00 40.26 3.72
3195 3259 3.234234 AGAATCCGGATGCCATCATTT 57.766 42.857 19.95 0.00 31.96 2.32
3266 3330 2.234414 TGGGAAGGTTGATGGTACGTAC 59.766 50.000 17.56 17.56 0.00 3.67
3285 3349 0.790207 CGTCGCTTGCACAGTTGTAT 59.210 50.000 0.00 0.00 0.00 2.29
3286 3350 1.462378 CGTCGCTTGCACAGTTGTATG 60.462 52.381 0.00 0.00 0.00 2.39
3287 3351 0.516877 TCGCTTGCACAGTTGTATGC 59.483 50.000 0.00 0.00 42.40 3.14
3340 3406 5.862845 AGATACTCCTATCATGTGCCAAAG 58.137 41.667 0.00 0.00 32.36 2.77
3393 3460 7.278203 GGGTTTAGTCAATTAGCTGAGAAGTAC 59.722 40.741 0.00 0.00 0.00 2.73
3435 3502 5.246883 AGGTTCAGATTTTCATGGAAAAGGG 59.753 40.000 2.57 0.00 43.33 3.95
3461 3528 0.729816 GACGAGACTGACGTTGGAGC 60.730 60.000 0.00 0.00 43.97 4.70
3561 3628 4.887748 TCTTACTGAAGTTTGCAGAGGAG 58.112 43.478 0.00 0.00 36.86 3.69
3605 3672 6.150641 GGGAAGATACTTAAGTTTGGACAACC 59.849 42.308 14.49 7.60 0.00 3.77
3607 3674 7.094762 GGAAGATACTTAAGTTTGGACAACCTG 60.095 40.741 14.49 0.00 37.04 4.00
3623 3690 2.097825 ACCTGCAAATTCTGATGGCTC 58.902 47.619 0.00 0.00 0.00 4.70
3760 3827 6.715344 ATGCAGCAAAAACATAACATCAAG 57.285 33.333 0.00 0.00 0.00 3.02
3768 3835 9.357652 GCAAAAACATAACATCAAGTACATGAT 57.642 29.630 7.76 7.76 40.64 2.45
3784 3851 5.830000 ACATGATCATCTCCAACAATGTG 57.170 39.130 4.86 0.00 0.00 3.21
3808 3875 6.015519 TGTTTTTCCCTATCCAGAATGTGTTG 60.016 38.462 0.00 0.00 0.00 3.33
3810 3877 2.092429 TCCCTATCCAGAATGTGTTGCC 60.092 50.000 0.00 0.00 0.00 4.52
3825 3892 2.225242 TGTTGCCCAACTCAATACCCAT 60.225 45.455 11.91 0.00 41.67 4.00
3826 3893 2.142356 TGCCCAACTCAATACCCATG 57.858 50.000 0.00 0.00 0.00 3.66
3827 3894 1.357420 TGCCCAACTCAATACCCATGT 59.643 47.619 0.00 0.00 0.00 3.21
3852 3919 7.633193 TTTTACTCTGTTCTTTTAACAGCCA 57.367 32.000 12.01 0.00 45.34 4.75
3853 3920 7.817418 TTTACTCTGTTCTTTTAACAGCCAT 57.183 32.000 12.01 4.10 45.34 4.40
3854 3921 5.948992 ACTCTGTTCTTTTAACAGCCATC 57.051 39.130 12.01 0.00 45.34 3.51
3855 3922 5.376625 ACTCTGTTCTTTTAACAGCCATCA 58.623 37.500 12.01 0.00 45.34 3.07
3856 3923 5.471456 ACTCTGTTCTTTTAACAGCCATCAG 59.529 40.000 12.01 7.29 45.34 2.90
3857 3924 5.620206 TCTGTTCTTTTAACAGCCATCAGA 58.380 37.500 12.01 0.00 45.34 3.27
3858 3925 5.702670 TCTGTTCTTTTAACAGCCATCAGAG 59.297 40.000 12.01 0.00 45.34 3.35
3860 3927 4.292186 TCTTTTAACAGCCATCAGAGCT 57.708 40.909 0.00 0.00 42.70 4.09
3861 3928 5.420725 TCTTTTAACAGCCATCAGAGCTA 57.579 39.130 0.00 0.00 38.95 3.32
3862 3929 5.804639 TCTTTTAACAGCCATCAGAGCTAA 58.195 37.500 0.00 0.00 38.95 3.09
3867 3934 8.574251 TTTAACAGCCATCAGAGCTAATTTTA 57.426 30.769 0.00 0.00 38.95 1.52
3875 3942 9.801873 GCCATCAGAGCTAATTTTATTTGTTTA 57.198 29.630 0.00 0.00 0.00 2.01
3895 3962 6.375174 TGTTTATTAGCTGATGATGTTGCTGT 59.625 34.615 0.32 0.00 37.02 4.40
3906 3973 8.032952 TGATGATGTTGCTGTAAGTAGAAAAG 57.967 34.615 0.00 0.00 35.30 2.27
3923 3990 9.566432 AGTAGAAAAGATATTGAATGGGTCATC 57.434 33.333 0.00 0.00 35.70 2.92
3926 3993 6.867662 AAAGATATTGAATGGGTCATCGAC 57.132 37.500 0.00 0.00 35.70 4.20
3931 3998 8.156820 AGATATTGAATGGGTCATCGACATTTA 58.843 33.333 0.00 0.00 35.70 1.40
3939 4006 5.533154 TGGGTCATCGACATTTAAACAAAGT 59.467 36.000 0.00 0.00 33.68 2.66
3940 4007 6.039941 TGGGTCATCGACATTTAAACAAAGTT 59.960 34.615 0.00 0.00 33.68 2.66
3941 4008 7.228906 TGGGTCATCGACATTTAAACAAAGTTA 59.771 33.333 0.00 0.00 33.68 2.24
3965 4032 9.729281 TTATCTTATTCCGGGATGGTAATTAAC 57.271 33.333 5.13 0.00 39.52 2.01
3983 4050 9.116067 GTAATTAACCATACTCAAATAGGCACA 57.884 33.333 0.00 0.00 0.00 4.57
3999 4066 2.190981 GCACAATTAGAGCATGCAAGC 58.809 47.619 21.98 5.62 36.30 4.01
4021 4088 4.737765 GCATGCAACTGTTTCTTTAACGAA 59.262 37.500 14.21 0.00 39.72 3.85
4025 4092 5.741510 TGCAACTGTTTCTTTAACGAACATG 59.258 36.000 0.00 0.00 39.72 3.21
4030 4097 6.092944 ACTGTTTCTTTAACGAACATGTCACA 59.907 34.615 0.00 0.00 39.72 3.58
4034 4101 6.223138 TCTTTAACGAACATGTCACATGTC 57.777 37.500 23.76 15.28 0.00 3.06
4035 4102 5.989168 TCTTTAACGAACATGTCACATGTCT 59.011 36.000 23.76 13.64 0.00 3.41
4036 4103 7.149307 TCTTTAACGAACATGTCACATGTCTA 58.851 34.615 23.76 10.21 0.00 2.59
4043 4110 7.915923 ACGAACATGTCACATGTCTACTATAAG 59.084 37.037 23.76 7.48 0.00 1.73
4044 4111 7.915923 CGAACATGTCACATGTCTACTATAAGT 59.084 37.037 23.76 3.97 0.00 2.24
4073 4140 7.121611 ACAAATGAAGCACATATCAATCACTCA 59.878 33.333 0.00 0.00 38.38 3.41
4076 4143 5.355071 TGAAGCACATATCAATCACTCAACC 59.645 40.000 0.00 0.00 0.00 3.77
4078 4145 5.443283 AGCACATATCAATCACTCAACCAT 58.557 37.500 0.00 0.00 0.00 3.55
4080 4147 5.530171 GCACATATCAATCACTCAACCATCT 59.470 40.000 0.00 0.00 0.00 2.90
4082 4149 6.990939 CACATATCAATCACTCAACCATCTCT 59.009 38.462 0.00 0.00 0.00 3.10
4094 4161 6.015940 ACTCAACCATCTCTGTTTCATTTTCC 60.016 38.462 0.00 0.00 0.00 3.13
4098 4165 6.515832 ACCATCTCTGTTTCATTTTCCAAAC 58.484 36.000 0.00 0.00 33.78 2.93
4123 4191 9.085645 ACCATATTCATTGTGCATCTTCATATT 57.914 29.630 0.00 0.00 0.00 1.28
4133 4201 7.428020 TGTGCATCTTCATATTTTCTATTGCC 58.572 34.615 0.00 0.00 0.00 4.52
4134 4202 7.286087 TGTGCATCTTCATATTTTCTATTGCCT 59.714 33.333 0.00 0.00 0.00 4.75
4139 4207 8.213518 TCTTCATATTTTCTATTGCCTGACAC 57.786 34.615 0.00 0.00 0.00 3.67
4152 4220 2.815589 GCCTGACACTTTGGAATGAGGT 60.816 50.000 0.00 0.00 0.00 3.85
4153 4221 3.559171 GCCTGACACTTTGGAATGAGGTA 60.559 47.826 0.00 0.00 0.00 3.08
4159 4227 5.941788 ACACTTTGGAATGAGGTATATCCC 58.058 41.667 0.00 0.00 36.75 3.85
4171 4239 6.646267 TGAGGTATATCCCGGTTATTTATGC 58.354 40.000 0.00 0.00 36.75 3.14
4181 4249 5.120399 CCGGTTATTTATGCAGTTCCAGTA 58.880 41.667 0.00 0.00 0.00 2.74
4189 4260 3.838244 TGCAGTTCCAGTAAGTGTCTT 57.162 42.857 0.00 0.00 40.18 3.01
4224 4295 6.884280 TCTCTTTGAGGAATTTGGTCTTTC 57.116 37.500 0.00 0.00 0.00 2.62
4227 4298 7.506938 TCTCTTTGAGGAATTTGGTCTTTCATT 59.493 33.333 0.00 0.00 0.00 2.57
4253 4324 5.049129 GCTTTTCAGCTTAAGACATGTGACT 60.049 40.000 1.15 0.00 43.51 3.41
4266 4337 5.757320 AGACATGTGACTATATGCTTTGCTC 59.243 40.000 1.15 0.00 0.00 4.26
4274 4345 9.956720 GTGACTATATGCTTTGCTCATAAATTT 57.043 29.630 0.00 0.00 31.08 1.82
4317 4408 6.662865 TTTTAGTGAAATGGATTTGGCTGA 57.337 33.333 0.00 0.00 0.00 4.26
4331 4422 3.500448 TGGCTGACCAAATAAGTGACA 57.500 42.857 0.00 0.00 45.37 3.58
4338 4429 6.149474 GCTGACCAAATAAGTGACATACAACT 59.851 38.462 0.00 0.00 0.00 3.16
4382 4474 3.637297 GGGACGACCTAGCTTTACG 57.363 57.895 3.44 0.00 35.85 3.18
4390 4482 5.958955 ACGACCTAGCTTTACGAATAACTT 58.041 37.500 0.00 0.00 0.00 2.66
4395 4487 8.923609 ACCTAGCTTTACGAATAACTTAAGTC 57.076 34.615 8.95 0.00 0.00 3.01
4417 4509 6.021596 GTCTTGTTGTATGCAAATAGGTTCG 58.978 40.000 0.00 0.00 36.22 3.95
4419 4511 6.874664 TCTTGTTGTATGCAAATAGGTTCGTA 59.125 34.615 0.00 0.00 36.22 3.43
4499 4593 5.556006 TCTCCATGATGTATGCTCATTGA 57.444 39.130 0.00 0.00 35.37 2.57
4518 4612 7.806690 TCATTGAGCAGAATTTATATAACCGC 58.193 34.615 0.00 0.00 0.00 5.68
4525 4619 6.095440 GCAGAATTTATATAACCGCCCATGAT 59.905 38.462 0.00 0.00 0.00 2.45
4556 4651 6.368516 TGTTTGCTTTGTTTCCTGAGAAAAAG 59.631 34.615 0.00 0.00 43.48 2.27
4557 4652 5.913137 TGCTTTGTTTCCTGAGAAAAAGA 57.087 34.783 4.90 0.00 43.48 2.52
4559 4654 6.877236 TGCTTTGTTTCCTGAGAAAAAGAAT 58.123 32.000 4.90 0.00 43.48 2.40
4562 4657 7.920682 GCTTTGTTTCCTGAGAAAAAGAATACA 59.079 33.333 4.90 0.00 43.48 2.29
4563 4658 9.455847 CTTTGTTTCCTGAGAAAAAGAATACAG 57.544 33.333 0.00 0.00 43.48 2.74
4565 4660 8.154649 TGTTTCCTGAGAAAAAGAATACAGTC 57.845 34.615 0.00 0.00 43.48 3.51
4566 4661 7.042051 TGTTTCCTGAGAAAAAGAATACAGTCG 60.042 37.037 0.00 0.00 43.48 4.18
4568 4663 7.223260 TCCTGAGAAAAAGAATACAGTCGTA 57.777 36.000 0.00 0.00 0.00 3.43
4569 4664 7.837863 TCCTGAGAAAAAGAATACAGTCGTAT 58.162 34.615 0.00 0.00 40.15 3.06
4589 4684 6.360329 CGTATTCACGGCTATTTGATTTACC 58.640 40.000 0.00 0.00 44.59 2.85
4590 4685 6.018588 CGTATTCACGGCTATTTGATTTACCA 60.019 38.462 0.00 0.00 44.59 3.25
4591 4686 6.959639 ATTCACGGCTATTTGATTTACCAT 57.040 33.333 0.00 0.00 0.00 3.55
4592 4687 5.749596 TCACGGCTATTTGATTTACCATG 57.250 39.130 0.00 0.00 0.00 3.66
4593 4688 5.189928 TCACGGCTATTTGATTTACCATGT 58.810 37.500 0.00 0.00 0.00 3.21
4594 4689 5.650266 TCACGGCTATTTGATTTACCATGTT 59.350 36.000 0.00 0.00 0.00 2.71
4595 4690 6.151985 TCACGGCTATTTGATTTACCATGTTT 59.848 34.615 0.00 0.00 0.00 2.83
4596 4691 6.811170 CACGGCTATTTGATTTACCATGTTTT 59.189 34.615 0.00 0.00 0.00 2.43
4597 4692 7.330700 CACGGCTATTTGATTTACCATGTTTTT 59.669 33.333 0.00 0.00 0.00 1.94
4632 4727 8.777578 AAACCTTTAGTTTCTTACCCTGAATT 57.222 30.769 0.00 0.00 45.85 2.17
4633 4728 8.777578 AACCTTTAGTTTCTTACCCTGAATTT 57.222 30.769 0.00 0.00 33.89 1.82
4634 4729 8.178313 ACCTTTAGTTTCTTACCCTGAATTTG 57.822 34.615 0.00 0.00 0.00 2.32
4635 4730 7.090808 CCTTTAGTTTCTTACCCTGAATTTGC 58.909 38.462 0.00 0.00 0.00 3.68
4636 4731 7.255801 CCTTTAGTTTCTTACCCTGAATTTGCA 60.256 37.037 0.00 0.00 0.00 4.08
4637 4732 7.589958 TTAGTTTCTTACCCTGAATTTGCAA 57.410 32.000 0.00 0.00 0.00 4.08
4638 4733 6.478512 AGTTTCTTACCCTGAATTTGCAAA 57.521 33.333 15.44 15.44 0.00 3.68
4639 4734 7.066307 AGTTTCTTACCCTGAATTTGCAAAT 57.934 32.000 18.99 18.99 0.00 2.32
4640 4735 7.508687 AGTTTCTTACCCTGAATTTGCAAATT 58.491 30.769 32.11 32.11 41.06 1.82
4652 4747 6.563222 AATTTGCAAATTCATGGTTGAAGG 57.437 33.333 27.73 0.00 44.75 3.46
4653 4748 4.686191 TTGCAAATTCATGGTTGAAGGT 57.314 36.364 0.00 0.00 44.75 3.50
4654 4749 4.686191 TGCAAATTCATGGTTGAAGGTT 57.314 36.364 8.35 0.00 44.75 3.50
4655 4750 5.033589 TGCAAATTCATGGTTGAAGGTTT 57.966 34.783 8.35 0.00 44.75 3.27
4656 4751 5.435291 TGCAAATTCATGGTTGAAGGTTTT 58.565 33.333 8.35 0.00 44.75 2.43
4657 4752 5.884792 TGCAAATTCATGGTTGAAGGTTTTT 59.115 32.000 8.35 0.00 44.75 1.94
4682 4777 8.900983 TTTTTAGAATGATTGAAGGTTTTGGG 57.099 30.769 0.00 0.00 0.00 4.12
4683 4778 7.847711 TTTAGAATGATTGAAGGTTTTGGGA 57.152 32.000 0.00 0.00 0.00 4.37
4684 4779 8.434589 TTTAGAATGATTGAAGGTTTTGGGAT 57.565 30.769 0.00 0.00 0.00 3.85
4685 4780 9.540538 TTTAGAATGATTGAAGGTTTTGGGATA 57.459 29.630 0.00 0.00 0.00 2.59
4686 4781 7.651027 AGAATGATTGAAGGTTTTGGGATAG 57.349 36.000 0.00 0.00 0.00 2.08
4687 4782 7.413446 AGAATGATTGAAGGTTTTGGGATAGA 58.587 34.615 0.00 0.00 0.00 1.98
4688 4783 7.895429 AGAATGATTGAAGGTTTTGGGATAGAA 59.105 33.333 0.00 0.00 0.00 2.10
4689 4784 6.834168 TGATTGAAGGTTTTGGGATAGAAC 57.166 37.500 0.00 0.00 0.00 3.01
4690 4785 5.714806 TGATTGAAGGTTTTGGGATAGAACC 59.285 40.000 0.00 0.00 42.44 3.62
4708 4803 1.994463 CCTATCCTAGGGGCATGGC 59.006 63.158 11.56 11.56 42.42 4.40
4709 4804 0.842030 CCTATCCTAGGGGCATGGCA 60.842 60.000 22.06 0.00 42.42 4.92
4710 4805 1.293062 CTATCCTAGGGGCATGGCAT 58.707 55.000 22.06 11.40 0.00 4.40
4711 4806 2.481441 CTATCCTAGGGGCATGGCATA 58.519 52.381 22.06 11.95 0.00 3.14
4712 4807 1.293062 ATCCTAGGGGCATGGCATAG 58.707 55.000 22.06 19.91 0.00 2.23
4713 4808 0.842030 TCCTAGGGGCATGGCATAGG 60.842 60.000 29.54 29.54 34.37 2.57
4714 4809 1.687612 CTAGGGGCATGGCATAGGG 59.312 63.158 22.06 3.02 0.00 3.53
4715 4810 2.490270 CTAGGGGCATGGCATAGGGC 62.490 65.000 22.06 0.53 43.74 5.19
4717 4812 4.586235 GGGCATGGCATAGGGCGT 62.586 66.667 22.06 0.00 46.16 5.68
4721 4816 3.330192 ATGGCATAGGGCGTGGAA 58.670 55.556 0.00 0.00 46.16 3.53
4722 4817 1.612513 ATGGCATAGGGCGTGGAAA 59.387 52.632 0.00 0.00 46.16 3.13
4723 4818 0.033601 ATGGCATAGGGCGTGGAAAA 60.034 50.000 0.00 0.00 46.16 2.29
4724 4819 0.033601 TGGCATAGGGCGTGGAAAAT 60.034 50.000 0.00 0.00 46.16 1.82
4725 4820 0.668535 GGCATAGGGCGTGGAAAATC 59.331 55.000 0.00 0.00 46.16 2.17
4726 4821 1.680338 GCATAGGGCGTGGAAAATCT 58.320 50.000 0.00 0.00 0.00 2.40
4727 4822 2.024414 GCATAGGGCGTGGAAAATCTT 58.976 47.619 0.00 0.00 0.00 2.40
4728 4823 3.211045 GCATAGGGCGTGGAAAATCTTA 58.789 45.455 0.00 0.00 0.00 2.10
4729 4824 3.821033 GCATAGGGCGTGGAAAATCTTAT 59.179 43.478 0.00 0.00 0.00 1.73
4730 4825 4.320494 GCATAGGGCGTGGAAAATCTTATG 60.320 45.833 0.00 0.00 0.00 1.90
4731 4826 2.024414 AGGGCGTGGAAAATCTTATGC 58.976 47.619 0.00 0.00 0.00 3.14
4732 4827 2.024414 GGGCGTGGAAAATCTTATGCT 58.976 47.619 0.00 0.00 0.00 3.79
4733 4828 2.033424 GGGCGTGGAAAATCTTATGCTC 59.967 50.000 0.00 0.00 0.00 4.26
4734 4829 2.033424 GGCGTGGAAAATCTTATGCTCC 59.967 50.000 0.00 0.00 0.00 4.70
4735 4830 2.033424 GCGTGGAAAATCTTATGCTCCC 59.967 50.000 0.00 0.00 0.00 4.30
4736 4831 2.618709 CGTGGAAAATCTTATGCTCCCC 59.381 50.000 0.00 0.00 0.00 4.81
4737 4832 2.618709 GTGGAAAATCTTATGCTCCCCG 59.381 50.000 0.00 0.00 0.00 5.73
4738 4833 2.230660 GGAAAATCTTATGCTCCCCGG 58.769 52.381 0.00 0.00 0.00 5.73
4739 4834 2.230660 GAAAATCTTATGCTCCCCGGG 58.769 52.381 15.80 15.80 0.00 5.73
4740 4835 1.222567 AAATCTTATGCTCCCCGGGT 58.777 50.000 21.85 1.96 0.00 5.28
4741 4836 0.765510 AATCTTATGCTCCCCGGGTC 59.234 55.000 21.85 8.80 0.00 4.46
4742 4837 1.128188 ATCTTATGCTCCCCGGGTCC 61.128 60.000 21.85 7.58 0.00 4.46
4743 4838 2.770904 TTATGCTCCCCGGGTCCC 60.771 66.667 21.85 7.18 0.00 4.46
4744 4839 3.644465 TTATGCTCCCCGGGTCCCA 62.644 63.158 21.85 13.23 0.00 4.37
4745 4840 3.644465 TATGCTCCCCGGGTCCCAA 62.644 63.158 21.85 0.47 0.00 4.12
4751 4846 3.253838 CCCGGGTCCCAACCTCAA 61.254 66.667 14.18 0.00 45.66 3.02
4752 4847 2.033602 CCGGGTCCCAACCTCAAC 59.966 66.667 9.12 0.00 45.66 3.18
4753 4848 2.033602 CGGGTCCCAACCTCAACC 59.966 66.667 9.12 0.00 45.66 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.435256 CCCTCCGTTTGATATCCCCT 58.565 55.000 0.00 0.00 0.00 4.79
1 2 0.400594 CCCCTCCGTTTGATATCCCC 59.599 60.000 0.00 0.00 0.00 4.81
2 3 0.400594 CCCCCTCCGTTTGATATCCC 59.599 60.000 0.00 0.00 0.00 3.85
22 23 2.362375 TTTGCTTCGCCATCCCCC 60.362 61.111 0.00 0.00 0.00 5.40
23 24 1.378514 TCTTTGCTTCGCCATCCCC 60.379 57.895 0.00 0.00 0.00 4.81
24 25 0.960364 TGTCTTTGCTTCGCCATCCC 60.960 55.000 0.00 0.00 0.00 3.85
25 26 0.881118 TTGTCTTTGCTTCGCCATCC 59.119 50.000 0.00 0.00 0.00 3.51
26 27 1.725931 CGTTGTCTTTGCTTCGCCATC 60.726 52.381 0.00 0.00 0.00 3.51
27 28 0.238289 CGTTGTCTTTGCTTCGCCAT 59.762 50.000 0.00 0.00 0.00 4.40
28 29 1.646540 CGTTGTCTTTGCTTCGCCA 59.353 52.632 0.00 0.00 0.00 5.69
29 30 1.725973 GCGTTGTCTTTGCTTCGCC 60.726 57.895 0.00 0.00 38.16 5.54
30 31 0.591236 TTGCGTTGTCTTTGCTTCGC 60.591 50.000 0.00 0.00 43.14 4.70
31 32 1.710249 CATTGCGTTGTCTTTGCTTCG 59.290 47.619 0.00 0.00 0.00 3.79
32 33 2.053627 CCATTGCGTTGTCTTTGCTTC 58.946 47.619 0.00 0.00 0.00 3.86
33 34 1.680735 TCCATTGCGTTGTCTTTGCTT 59.319 42.857 0.00 0.00 0.00 3.91
34 35 1.001378 GTCCATTGCGTTGTCTTTGCT 60.001 47.619 0.00 0.00 0.00 3.91
35 36 1.408422 GTCCATTGCGTTGTCTTTGC 58.592 50.000 0.00 0.00 0.00 3.68
36 37 1.002900 ACGTCCATTGCGTTGTCTTTG 60.003 47.619 0.00 0.00 39.79 2.77
37 38 1.002900 CACGTCCATTGCGTTGTCTTT 60.003 47.619 0.00 0.00 40.90 2.52
38 39 0.586319 CACGTCCATTGCGTTGTCTT 59.414 50.000 0.00 0.00 40.90 3.01
39 40 0.531974 ACACGTCCATTGCGTTGTCT 60.532 50.000 0.00 0.00 40.90 3.41
40 41 0.384230 CACACGTCCATTGCGTTGTC 60.384 55.000 0.00 0.00 40.90 3.18
41 42 1.646540 CACACGTCCATTGCGTTGT 59.353 52.632 0.00 0.00 40.90 3.32
42 43 1.082169 CCACACGTCCATTGCGTTG 60.082 57.895 0.00 0.00 40.90 4.10
43 44 0.816018 TTCCACACGTCCATTGCGTT 60.816 50.000 0.00 0.00 40.90 4.84
44 45 0.605319 ATTCCACACGTCCATTGCGT 60.605 50.000 0.00 0.00 43.90 5.24
45 46 0.179192 CATTCCACACGTCCATTGCG 60.179 55.000 0.00 0.00 0.00 4.85
46 47 0.456653 GCATTCCACACGTCCATTGC 60.457 55.000 0.00 0.00 0.00 3.56
47 48 0.179192 CGCATTCCACACGTCCATTG 60.179 55.000 0.00 0.00 0.00 2.82
48 49 0.321210 TCGCATTCCACACGTCCATT 60.321 50.000 0.00 0.00 0.00 3.16
49 50 1.019278 GTCGCATTCCACACGTCCAT 61.019 55.000 0.00 0.00 0.00 3.41
50 51 1.666553 GTCGCATTCCACACGTCCA 60.667 57.895 0.00 0.00 0.00 4.02
51 52 0.108992 TAGTCGCATTCCACACGTCC 60.109 55.000 0.00 0.00 0.00 4.79
52 53 0.989890 GTAGTCGCATTCCACACGTC 59.010 55.000 0.00 0.00 0.00 4.34
53 54 0.389426 GGTAGTCGCATTCCACACGT 60.389 55.000 0.00 0.00 0.00 4.49
54 55 1.082117 GGGTAGTCGCATTCCACACG 61.082 60.000 0.00 0.00 0.00 4.49
55 56 0.036765 TGGGTAGTCGCATTCCACAC 60.037 55.000 0.00 0.00 0.00 3.82
56 57 0.249120 CTGGGTAGTCGCATTCCACA 59.751 55.000 0.00 0.00 36.01 4.17
57 58 0.462047 CCTGGGTAGTCGCATTCCAC 60.462 60.000 0.00 0.00 36.01 4.02
58 59 1.622607 CCCTGGGTAGTCGCATTCCA 61.623 60.000 3.97 0.00 36.01 3.53
59 60 1.146263 CCCTGGGTAGTCGCATTCC 59.854 63.158 3.97 0.00 36.01 3.01
60 61 1.523938 GCCCTGGGTAGTCGCATTC 60.524 63.158 15.56 0.00 36.01 2.67
61 62 1.995626 AGCCCTGGGTAGTCGCATT 60.996 57.895 15.56 0.00 36.01 3.56
62 63 2.365635 AGCCCTGGGTAGTCGCAT 60.366 61.111 15.56 0.00 36.01 4.73
63 64 3.390521 CAGCCCTGGGTAGTCGCA 61.391 66.667 15.56 0.00 35.30 5.10
64 65 4.162690 CCAGCCCTGGGTAGTCGC 62.163 72.222 15.56 0.00 46.81 5.19
77 78 3.936772 TTTGGATGACCGGCCCAGC 62.937 63.158 0.00 2.04 39.42 4.85
78 79 0.684153 ATTTTGGATGACCGGCCCAG 60.684 55.000 0.00 0.00 39.42 4.45
79 80 0.626382 TATTTTGGATGACCGGCCCA 59.374 50.000 0.00 0.00 39.42 5.36
80 81 1.407618 GTTATTTTGGATGACCGGCCC 59.592 52.381 0.00 0.00 39.42 5.80
81 82 2.096248 TGTTATTTTGGATGACCGGCC 58.904 47.619 0.00 0.00 39.42 6.13
82 83 2.752903 ACTGTTATTTTGGATGACCGGC 59.247 45.455 0.00 0.00 39.42 6.13
83 84 4.006989 TCACTGTTATTTTGGATGACCGG 58.993 43.478 0.00 0.00 39.42 5.28
84 85 5.818136 ATCACTGTTATTTTGGATGACCG 57.182 39.130 0.00 0.00 39.42 4.79
85 86 7.601856 TGAAATCACTGTTATTTTGGATGACC 58.398 34.615 1.85 0.00 0.00 4.02
86 87 9.079833 CATGAAATCACTGTTATTTTGGATGAC 57.920 33.333 1.85 0.00 0.00 3.06
87 88 8.805175 ACATGAAATCACTGTTATTTTGGATGA 58.195 29.630 0.00 0.00 0.00 2.92
88 89 8.991243 ACATGAAATCACTGTTATTTTGGATG 57.009 30.769 0.00 7.19 0.00 3.51
98 99 8.204836 GGGAGTACTATACATGAAATCACTGTT 58.795 37.037 0.00 0.00 0.00 3.16
99 100 7.202011 GGGGAGTACTATACATGAAATCACTGT 60.202 40.741 0.00 0.00 0.00 3.55
100 101 7.155328 GGGGAGTACTATACATGAAATCACTG 58.845 42.308 0.00 0.00 0.00 3.66
101 102 6.270231 GGGGGAGTACTATACATGAAATCACT 59.730 42.308 0.00 0.00 0.00 3.41
102 103 6.465084 GGGGGAGTACTATACATGAAATCAC 58.535 44.000 0.00 0.00 0.00 3.06
103 104 6.681729 GGGGGAGTACTATACATGAAATCA 57.318 41.667 0.00 0.00 0.00 2.57
123 124 3.840078 AGACAAGAATTTTGGAATGGGGG 59.160 43.478 5.68 0.00 0.00 5.40
124 125 5.488262 AAGACAAGAATTTTGGAATGGGG 57.512 39.130 5.68 0.00 0.00 4.96
125 126 7.466746 TCTAAGACAAGAATTTTGGAATGGG 57.533 36.000 5.68 0.00 0.00 4.00
126 127 9.933723 AAATCTAAGACAAGAATTTTGGAATGG 57.066 29.630 5.68 0.00 0.00 3.16
129 130 9.965824 GACAAATCTAAGACAAGAATTTTGGAA 57.034 29.630 0.00 0.00 33.04 3.53
130 131 9.354673 AGACAAATCTAAGACAAGAATTTTGGA 57.645 29.630 0.00 0.00 33.04 3.53
206 207 8.197439 CCCAAAATTCTTGTCTTAGTTTTGTCT 58.803 33.333 0.00 0.00 35.75 3.41
207 208 8.194769 TCCCAAAATTCTTGTCTTAGTTTTGTC 58.805 33.333 0.00 0.00 35.75 3.18
208 209 8.073467 TCCCAAAATTCTTGTCTTAGTTTTGT 57.927 30.769 0.00 0.00 35.75 2.83
209 210 8.940768 TTCCCAAAATTCTTGTCTTAGTTTTG 57.059 30.769 0.00 0.00 36.70 2.44
210 211 8.977412 TCTTCCCAAAATTCTTGTCTTAGTTTT 58.023 29.630 0.00 0.00 0.00 2.43
211 212 8.533569 TCTTCCCAAAATTCTTGTCTTAGTTT 57.466 30.769 0.00 0.00 0.00 2.66
212 213 8.533569 TTCTTCCCAAAATTCTTGTCTTAGTT 57.466 30.769 0.00 0.00 0.00 2.24
213 214 7.231519 CCTTCTTCCCAAAATTCTTGTCTTAGT 59.768 37.037 0.00 0.00 0.00 2.24
214 215 7.448469 TCCTTCTTCCCAAAATTCTTGTCTTAG 59.552 37.037 0.00 0.00 0.00 2.18
215 216 7.294584 TCCTTCTTCCCAAAATTCTTGTCTTA 58.705 34.615 0.00 0.00 0.00 2.10
216 217 6.136155 TCCTTCTTCCCAAAATTCTTGTCTT 58.864 36.000 0.00 0.00 0.00 3.01
217 218 5.705400 TCCTTCTTCCCAAAATTCTTGTCT 58.295 37.500 0.00 0.00 0.00 3.41
218 219 6.040955 ACTTCCTTCTTCCCAAAATTCTTGTC 59.959 38.462 0.00 0.00 0.00 3.18
219 220 5.899547 ACTTCCTTCTTCCCAAAATTCTTGT 59.100 36.000 0.00 0.00 0.00 3.16
220 221 6.410942 ACTTCCTTCTTCCCAAAATTCTTG 57.589 37.500 0.00 0.00 0.00 3.02
221 222 7.066781 TGTACTTCCTTCTTCCCAAAATTCTT 58.933 34.615 0.00 0.00 0.00 2.52
222 223 6.610830 TGTACTTCCTTCTTCCCAAAATTCT 58.389 36.000 0.00 0.00 0.00 2.40
223 224 6.894339 TGTACTTCCTTCTTCCCAAAATTC 57.106 37.500 0.00 0.00 0.00 2.17
224 225 7.855784 AATGTACTTCCTTCTTCCCAAAATT 57.144 32.000 0.00 0.00 0.00 1.82
225 226 8.950007 TTAATGTACTTCCTTCTTCCCAAAAT 57.050 30.769 0.00 0.00 0.00 1.82
226 227 8.221944 TCTTAATGTACTTCCTTCTTCCCAAAA 58.778 33.333 0.00 0.00 0.00 2.44
227 228 7.751646 TCTTAATGTACTTCCTTCTTCCCAAA 58.248 34.615 0.00 0.00 0.00 3.28
228 229 7.324388 TCTTAATGTACTTCCTTCTTCCCAA 57.676 36.000 0.00 0.00 0.00 4.12
229 230 6.576442 GCTCTTAATGTACTTCCTTCTTCCCA 60.576 42.308 0.00 0.00 0.00 4.37
230 231 5.818336 GCTCTTAATGTACTTCCTTCTTCCC 59.182 44.000 0.00 0.00 0.00 3.97
231 232 6.407202 TGCTCTTAATGTACTTCCTTCTTCC 58.593 40.000 0.00 0.00 0.00 3.46
232 233 7.011857 CCATGCTCTTAATGTACTTCCTTCTTC 59.988 40.741 0.00 0.00 0.00 2.87
233 234 6.825721 CCATGCTCTTAATGTACTTCCTTCTT 59.174 38.462 0.00 0.00 0.00 2.52
234 235 6.069963 ACCATGCTCTTAATGTACTTCCTTCT 60.070 38.462 0.00 0.00 0.00 2.85
235 236 6.116126 ACCATGCTCTTAATGTACTTCCTTC 58.884 40.000 0.00 0.00 0.00 3.46
236 237 6.067217 ACCATGCTCTTAATGTACTTCCTT 57.933 37.500 0.00 0.00 0.00 3.36
237 238 5.700402 ACCATGCTCTTAATGTACTTCCT 57.300 39.130 0.00 0.00 0.00 3.36
238 239 7.859325 TTAACCATGCTCTTAATGTACTTCC 57.141 36.000 0.00 0.00 0.00 3.46
246 247 9.892130 GGCTATACTATTAACCATGCTCTTAAT 57.108 33.333 0.00 0.00 0.00 1.40
249 250 7.316393 TGGCTATACTATTAACCATGCTCTT 57.684 36.000 0.00 0.00 0.00 2.85
307 308 7.680739 TGTACATATTGGGTATAAGATGGGCTA 59.319 37.037 0.00 0.00 34.46 3.93
370 371 1.918262 TGAGAGTGAAAGATGGGCCAT 59.082 47.619 21.39 21.39 0.00 4.40
385 386 3.256879 TGCTCCTAGACACTTTGTGAGAG 59.743 47.826 4.61 4.17 36.96 3.20
437 438 2.096248 GAAGAGAGAGAAGGGAAGCGA 58.904 52.381 0.00 0.00 0.00 4.93
455 456 5.071788 TGCTTAGTTGGAGGAAAGAGAAGAA 59.928 40.000 0.00 0.00 0.00 2.52
537 538 7.374975 TGGCTATACTATTAACCTTGCTCTT 57.625 36.000 0.00 0.00 0.00 2.85
577 578 4.566278 GGGCTATAGATGACATGGCAATGA 60.566 45.833 4.70 0.00 37.24 2.57
663 664 4.191544 CACTTTGTGAGAGTGAAAGGTGA 58.808 43.478 0.00 0.00 45.72 4.02
716 717 2.188207 GAGAAGGGAAGCGGGCTC 59.812 66.667 0.00 0.00 0.00 4.70
717 718 2.284995 AGAGAAGGGAAGCGGGCT 60.285 61.111 0.00 0.00 0.00 5.19
718 719 2.188207 GAGAGAAGGGAAGCGGGC 59.812 66.667 0.00 0.00 0.00 6.13
719 720 0.686112 AGAGAGAGAAGGGAAGCGGG 60.686 60.000 0.00 0.00 0.00 6.13
720 721 1.136110 GAAGAGAGAGAAGGGAAGCGG 59.864 57.143 0.00 0.00 0.00 5.52
726 743 5.105351 GGAAAGAGAAGAAGAGAGAGAAGGG 60.105 48.000 0.00 0.00 0.00 3.95
812 829 9.507329 AGTTATTTTCATCTTACTCAGAGCAAA 57.493 29.630 0.00 0.00 33.87 3.68
903 922 0.316841 TTTTGATGTTCCCGGCTTGC 59.683 50.000 0.00 0.00 0.00 4.01
936 962 1.563577 GGGGGAGGAAGGTGGAAGAC 61.564 65.000 0.00 0.00 0.00 3.01
940 966 1.541368 CAAGGGGGAGGAAGGTGGA 60.541 63.158 0.00 0.00 0.00 4.02
941 967 1.541368 TCAAGGGGGAGGAAGGTGG 60.541 63.158 0.00 0.00 0.00 4.61
986 1012 2.285024 CCCATGGCAGTGTTTGGGG 61.285 63.158 14.21 8.06 44.29 4.96
994 1020 0.482446 TTCTTGGTTCCCATGGCAGT 59.518 50.000 6.09 0.00 31.53 4.40
1284 1310 0.033894 GAGAGGAGAGGGACCGACTT 60.034 60.000 0.00 0.00 0.00 3.01
1296 1322 3.669939 AAAGAGAGGAGAGGAGAGGAG 57.330 52.381 0.00 0.00 0.00 3.69
1297 1323 4.045334 AGAAAAAGAGAGGAGAGGAGAGGA 59.955 45.833 0.00 0.00 0.00 3.71
1298 1324 4.352893 AGAAAAAGAGAGGAGAGGAGAGG 58.647 47.826 0.00 0.00 0.00 3.69
1299 1325 5.723295 CAAGAAAAAGAGAGGAGAGGAGAG 58.277 45.833 0.00 0.00 0.00 3.20
1300 1326 4.020662 GCAAGAAAAAGAGAGGAGAGGAGA 60.021 45.833 0.00 0.00 0.00 3.71
1301 1327 4.252878 GCAAGAAAAAGAGAGGAGAGGAG 58.747 47.826 0.00 0.00 0.00 3.69
1305 1331 2.417719 GCGCAAGAAAAAGAGAGGAGA 58.582 47.619 0.30 0.00 43.02 3.71
1538 1567 3.701542 TCTAAGATGGTCCAGTACAGCAG 59.298 47.826 0.00 0.00 0.00 4.24
1551 1580 6.234177 AGACACAAACTTTCCTCTAAGATGG 58.766 40.000 0.00 0.00 0.00 3.51
1568 1597 3.845781 AAGCTTTGAGAGGAGACACAA 57.154 42.857 0.00 0.00 0.00 3.33
1574 1603 4.142293 GGCCAAATAAAGCTTTGAGAGGAG 60.142 45.833 22.02 5.66 38.17 3.69
1593 1622 6.438741 TGGAATAACACAATTATTGAAGGCCA 59.561 34.615 12.28 6.70 0.00 5.36
1698 1727 5.125097 AGTCAGCAGATCACCAATTCATTTC 59.875 40.000 0.00 0.00 0.00 2.17
1701 1730 3.945921 CAGTCAGCAGATCACCAATTCAT 59.054 43.478 0.00 0.00 0.00 2.57
1706 1735 0.671472 CGCAGTCAGCAGATCACCAA 60.671 55.000 0.00 0.00 46.13 3.67
1736 1765 6.795098 AAGAAGACAATAATGCACGTTGTA 57.205 33.333 11.72 0.00 36.30 2.41
2061 2092 7.043325 GGAGAATGTAGTGCACTAATTTCTACG 60.043 40.741 32.20 0.00 34.64 3.51
2174 2205 8.075593 ACTGATTTGTTGCATTGTAATGTTTC 57.924 30.769 6.48 0.00 38.65 2.78
2394 2453 3.252458 GTCCAGATAAAACAGCAAACGGT 59.748 43.478 0.00 0.00 0.00 4.83
2550 2612 9.524106 CACTTATACCACGTCAGAAAATATGTA 57.476 33.333 0.00 0.00 0.00 2.29
2581 2644 7.333528 AGCCAATGTATCGTTATTTTGACAT 57.666 32.000 0.00 0.00 0.00 3.06
2639 2702 0.972883 TAAGGCCCAAAGCGCAAAAT 59.027 45.000 11.47 0.00 45.17 1.82
2646 2709 0.895530 GGGAAGTTAAGGCCCAAAGC 59.104 55.000 0.00 0.00 41.64 3.51
3053 3117 3.623060 ACACACAGTTGTTCACTAAGCAG 59.377 43.478 0.00 0.00 32.76 4.24
3073 3137 3.327757 ACTCCCTCTGCAGAAAATACACA 59.672 43.478 18.85 0.00 0.00 3.72
3266 3330 0.790207 ATACAACTGTGCAAGCGACG 59.210 50.000 0.00 0.00 0.00 5.12
3331 3397 6.753180 TGCTAACAAATAAATCTTTGGCACA 58.247 32.000 0.00 0.00 39.83 4.57
3332 3398 7.832503 ATGCTAACAAATAAATCTTTGGCAC 57.167 32.000 0.00 0.00 39.83 5.01
3340 3406 9.787532 TGCAGAGTTAATGCTAACAAATAAATC 57.212 29.630 1.55 0.00 44.17 2.17
3393 3460 1.674221 CCTCCAAGCTTCAGAAGTCCG 60.674 57.143 11.94 0.62 0.00 4.79
3435 3502 1.070041 ACGTCAGTCTCGTCTTTCGTC 60.070 52.381 0.00 0.00 36.85 4.20
3461 3528 8.076178 ACAAAGTTGTAATAGCAAGCTTAACTG 58.924 33.333 0.00 0.00 40.16 3.16
3605 3672 2.479730 GCAGAGCCATCAGAATTTGCAG 60.480 50.000 0.00 0.00 0.00 4.41
3607 3674 1.475280 TGCAGAGCCATCAGAATTTGC 59.525 47.619 0.00 0.00 0.00 3.68
3623 3690 3.309682 CGTACCACTATCAATTGGTGCAG 59.690 47.826 5.42 0.00 45.89 4.41
3760 3827 6.317140 ACACATTGTTGGAGATGATCATGTAC 59.683 38.462 14.30 10.95 0.00 2.90
3768 3835 5.221422 GGGAAAAACACATTGTTGGAGATGA 60.221 40.000 0.00 0.00 40.14 2.92
3772 3839 4.670896 AGGGAAAAACACATTGTTGGAG 57.329 40.909 0.00 0.00 40.14 3.86
3784 3851 6.389906 CAACACATTCTGGATAGGGAAAAAC 58.610 40.000 0.00 0.00 0.00 2.43
3808 3875 2.143876 ACATGGGTATTGAGTTGGGC 57.856 50.000 0.00 0.00 0.00 5.36
3810 3877 7.176690 AGAGTAAAAACATGGGTATTGAGTTGG 59.823 37.037 0.00 0.00 0.00 3.77
3867 3934 8.472413 AGCAACATCATCAGCTAATAAACAAAT 58.528 29.630 0.00 0.00 35.19 2.32
3875 3942 6.118170 ACTTACAGCAACATCATCAGCTAAT 58.882 36.000 0.00 0.00 35.19 1.73
3906 3973 6.808008 AATGTCGATGACCCATTCAATATC 57.192 37.500 0.00 0.00 37.92 1.63
3931 3998 7.068226 CCATCCCGGAATAAGATAACTTTGTTT 59.932 37.037 0.73 0.00 35.68 2.83
3939 4006 9.729281 GTTAATTACCATCCCGGAATAAGATAA 57.271 33.333 0.73 0.00 38.63 1.75
3940 4007 8.323567 GGTTAATTACCATCCCGGAATAAGATA 58.676 37.037 0.73 0.00 46.92 1.98
3941 4008 7.173032 GGTTAATTACCATCCCGGAATAAGAT 58.827 38.462 0.73 0.00 46.92 2.40
3965 4032 7.308229 GCTCTAATTGTGCCTATTTGAGTATGG 60.308 40.741 15.29 0.00 37.26 2.74
3966 4033 7.227314 TGCTCTAATTGTGCCTATTTGAGTATG 59.773 37.037 15.29 0.00 37.26 2.39
3968 4035 6.649155 TGCTCTAATTGTGCCTATTTGAGTA 58.351 36.000 15.29 11.41 37.26 2.59
3999 4066 5.741510 TGTTCGTTAAAGAAACAGTTGCATG 59.258 36.000 5.37 0.00 38.03 4.06
4046 4113 8.510243 AGTGATTGATATGTGCTTCATTTGTA 57.490 30.769 0.89 0.00 37.91 2.41
4049 4116 7.634671 TGAGTGATTGATATGTGCTTCATTT 57.365 32.000 0.89 0.00 37.91 2.32
4068 4135 5.954296 AATGAAACAGAGATGGTTGAGTG 57.046 39.130 0.00 0.00 0.00 3.51
4073 4140 6.729690 TTGGAAAATGAAACAGAGATGGTT 57.270 33.333 0.00 0.00 0.00 3.67
4076 4143 6.514947 TGGTTTGGAAAATGAAACAGAGATG 58.485 36.000 0.00 0.00 34.36 2.90
4078 4145 6.729690 ATGGTTTGGAAAATGAAACAGAGA 57.270 33.333 0.00 0.00 34.36 3.10
4080 4147 8.646004 TGAATATGGTTTGGAAAATGAAACAGA 58.354 29.630 0.00 0.00 34.36 3.41
4082 4149 9.790344 AATGAATATGGTTTGGAAAATGAAACA 57.210 25.926 0.00 0.00 34.36 2.83
4094 4161 7.036829 TGAAGATGCACAATGAATATGGTTTG 58.963 34.615 0.00 0.00 0.00 2.93
4098 4165 9.923143 AAATATGAAGATGCACAATGAATATGG 57.077 29.630 0.00 0.00 0.00 2.74
4123 4191 4.724399 TCCAAAGTGTCAGGCAATAGAAA 58.276 39.130 0.00 0.00 0.00 2.52
4133 4201 6.708054 GGATATACCTCATTCCAAAGTGTCAG 59.292 42.308 0.00 0.00 35.41 3.51
4134 4202 6.409234 GGGATATACCTCATTCCAAAGTGTCA 60.409 42.308 0.00 0.00 38.98 3.58
4139 4207 4.041691 ACCGGGATATACCTCATTCCAAAG 59.958 45.833 6.32 0.00 38.98 2.77
4152 4220 7.107542 GGAACTGCATAAATAACCGGGATATA 58.892 38.462 6.32 0.00 0.00 0.86
4153 4221 5.944007 GGAACTGCATAAATAACCGGGATAT 59.056 40.000 6.32 0.55 0.00 1.63
4159 4227 6.315393 ACTTACTGGAACTGCATAAATAACCG 59.685 38.462 0.00 0.00 0.00 4.44
4196 4267 6.432472 AGACCAAATTCCTCAAAGAGAACATC 59.568 38.462 0.00 0.00 0.00 3.06
4198 4269 5.694995 AGACCAAATTCCTCAAAGAGAACA 58.305 37.500 0.00 0.00 0.00 3.18
4224 4295 6.643770 ACATGTCTTAAGCTGAAAAGCAAATG 59.356 34.615 0.00 0.33 37.25 2.32
4227 4298 5.299028 TCACATGTCTTAAGCTGAAAAGCAA 59.701 36.000 0.00 0.00 37.25 3.91
4238 4309 8.066595 GCAAAGCATATAGTCACATGTCTTAAG 58.933 37.037 0.00 0.00 0.00 1.85
4240 4311 7.275183 AGCAAAGCATATAGTCACATGTCTTA 58.725 34.615 0.00 0.00 0.00 2.10
4242 4313 5.678583 AGCAAAGCATATAGTCACATGTCT 58.321 37.500 0.00 0.00 0.00 3.41
4243 4314 5.525012 TGAGCAAAGCATATAGTCACATGTC 59.475 40.000 0.00 0.00 0.00 3.06
4244 4315 5.430886 TGAGCAAAGCATATAGTCACATGT 58.569 37.500 0.00 0.00 0.00 3.21
4245 4316 5.996669 TGAGCAAAGCATATAGTCACATG 57.003 39.130 0.00 0.00 0.00 3.21
4246 4317 8.681486 TTTATGAGCAAAGCATATAGTCACAT 57.319 30.769 0.00 0.00 0.00 3.21
4253 4324 9.353431 TCCAGAAATTTATGAGCAAAGCATATA 57.647 29.630 14.30 0.00 0.00 0.86
4313 4404 6.149474 AGTTGTATGTCACTTATTTGGTCAGC 59.851 38.462 0.00 0.00 0.00 4.26
4317 4408 8.512138 GCTAAAGTTGTATGTCACTTATTTGGT 58.488 33.333 0.00 0.00 0.00 3.67
4346 4437 8.095169 GGTCGTCCCTTAGATACATTGAATTAT 58.905 37.037 0.00 0.00 0.00 1.28
4348 4439 6.099845 AGGTCGTCCCTTAGATACATTGAATT 59.900 38.462 0.00 0.00 42.73 2.17
4355 4446 3.137913 AGCTAGGTCGTCCCTTAGATACA 59.862 47.826 1.83 0.00 42.73 2.29
4371 4463 9.583765 AAGACTTAAGTTATTCGTAAAGCTAGG 57.416 33.333 10.02 0.00 0.00 3.02
4390 4482 8.630054 AACCTATTTGCATACAACAAGACTTA 57.370 30.769 0.00 0.00 34.87 2.24
4395 4487 5.938322 ACGAACCTATTTGCATACAACAAG 58.062 37.500 0.00 0.00 34.87 3.16
4499 4593 4.980573 TGGGCGGTTATATAAATTCTGCT 58.019 39.130 12.57 0.00 0.00 4.24
4510 4604 4.908601 ATGAAGATCATGGGCGGTTATA 57.091 40.909 0.00 0.00 35.43 0.98
4525 4619 5.126869 TCAGGAAACAAAGCAAACATGAAGA 59.873 36.000 0.00 0.00 0.00 2.87
4536 4631 7.920682 TGTATTCTTTTTCTCAGGAAACAAAGC 59.079 33.333 0.00 0.00 40.63 3.51
4566 4661 7.254227 TGGTAAATCAAATAGCCGTGAATAC 57.746 36.000 0.00 0.00 0.00 1.89
4568 4663 6.321181 ACATGGTAAATCAAATAGCCGTGAAT 59.679 34.615 7.49 0.00 36.72 2.57
4569 4664 5.650266 ACATGGTAAATCAAATAGCCGTGAA 59.350 36.000 7.49 0.00 36.72 3.18
4570 4665 5.189928 ACATGGTAAATCAAATAGCCGTGA 58.810 37.500 7.49 0.00 36.72 4.35
4571 4666 5.499139 ACATGGTAAATCAAATAGCCGTG 57.501 39.130 0.00 0.00 38.55 4.94
4572 4667 6.524101 AAACATGGTAAATCAAATAGCCGT 57.476 33.333 0.00 0.00 0.00 5.68
4573 4668 7.826260 AAAAACATGGTAAATCAAATAGCCG 57.174 32.000 0.00 0.00 0.00 5.52
4603 4698 9.871175 TCAGGGTAAGAAACTAAAGGTTTTTAT 57.129 29.630 0.00 0.00 46.77 1.40
4604 4699 9.697990 TTCAGGGTAAGAAACTAAAGGTTTTTA 57.302 29.630 0.00 0.00 46.77 1.52
4605 4700 8.598202 TTCAGGGTAAGAAACTAAAGGTTTTT 57.402 30.769 0.00 0.00 46.77 1.94
4606 4701 8.777578 ATTCAGGGTAAGAAACTAAAGGTTTT 57.222 30.769 0.00 0.00 46.77 2.43
4608 4703 8.638873 CAAATTCAGGGTAAGAAACTAAAGGTT 58.361 33.333 0.00 0.00 40.28 3.50
4609 4704 7.255836 GCAAATTCAGGGTAAGAAACTAAAGGT 60.256 37.037 0.00 0.00 0.00 3.50
4610 4705 7.090808 GCAAATTCAGGGTAAGAAACTAAAGG 58.909 38.462 0.00 0.00 0.00 3.11
4611 4706 7.657336 TGCAAATTCAGGGTAAGAAACTAAAG 58.343 34.615 0.00 0.00 0.00 1.85
4612 4707 7.589958 TGCAAATTCAGGGTAAGAAACTAAA 57.410 32.000 0.00 0.00 0.00 1.85
4613 4708 7.589958 TTGCAAATTCAGGGTAAGAAACTAA 57.410 32.000 0.00 0.00 0.00 2.24
4614 4709 7.589958 TTTGCAAATTCAGGGTAAGAAACTA 57.410 32.000 8.05 0.00 0.00 2.24
4615 4710 6.478512 TTTGCAAATTCAGGGTAAGAAACT 57.521 33.333 8.05 0.00 0.00 2.66
4616 4711 7.728847 AATTTGCAAATTCAGGGTAAGAAAC 57.271 32.000 27.73 0.00 33.54 2.78
4629 4724 6.063404 ACCTTCAACCATGAATTTGCAAATT 58.937 32.000 32.11 32.11 44.29 1.82
4630 4725 5.623169 ACCTTCAACCATGAATTTGCAAAT 58.377 33.333 18.99 18.99 44.29 2.32
4631 4726 5.033589 ACCTTCAACCATGAATTTGCAAA 57.966 34.783 15.44 15.44 44.29 3.68
4632 4727 4.686191 ACCTTCAACCATGAATTTGCAA 57.314 36.364 0.00 0.00 44.29 4.08
4633 4728 4.686191 AACCTTCAACCATGAATTTGCA 57.314 36.364 0.00 0.00 44.29 4.08
4634 4729 6.375945 AAAAACCTTCAACCATGAATTTGC 57.624 33.333 0.00 0.00 44.29 3.68
4657 4752 8.709308 TCCCAAAACCTTCAATCATTCTAAAAA 58.291 29.630 0.00 0.00 0.00 1.94
4658 4753 8.256356 TCCCAAAACCTTCAATCATTCTAAAA 57.744 30.769 0.00 0.00 0.00 1.52
4659 4754 7.847711 TCCCAAAACCTTCAATCATTCTAAA 57.152 32.000 0.00 0.00 0.00 1.85
4660 4755 9.189156 CTATCCCAAAACCTTCAATCATTCTAA 57.811 33.333 0.00 0.00 0.00 2.10
4661 4756 8.556589 TCTATCCCAAAACCTTCAATCATTCTA 58.443 33.333 0.00 0.00 0.00 2.10
4662 4757 7.413446 TCTATCCCAAAACCTTCAATCATTCT 58.587 34.615 0.00 0.00 0.00 2.40
4663 4758 7.645058 TCTATCCCAAAACCTTCAATCATTC 57.355 36.000 0.00 0.00 0.00 2.67
4664 4759 7.093333 GGTTCTATCCCAAAACCTTCAATCATT 60.093 37.037 0.00 0.00 39.48 2.57
4665 4760 6.381133 GGTTCTATCCCAAAACCTTCAATCAT 59.619 38.462 0.00 0.00 39.48 2.45
4666 4761 5.714806 GGTTCTATCCCAAAACCTTCAATCA 59.285 40.000 0.00 0.00 39.48 2.57
4667 4762 5.127194 GGGTTCTATCCCAAAACCTTCAATC 59.873 44.000 3.75 0.00 46.30 2.67
4668 4763 5.023452 GGGTTCTATCCCAAAACCTTCAAT 58.977 41.667 3.75 0.00 46.30 2.57
4669 4764 4.412843 GGGTTCTATCCCAAAACCTTCAA 58.587 43.478 3.75 0.00 46.30 2.69
4670 4765 4.042271 GGGTTCTATCCCAAAACCTTCA 57.958 45.455 3.75 0.00 46.30 3.02
4691 4786 1.293062 ATGCCATGCCCCTAGGATAG 58.707 55.000 11.48 0.00 38.80 2.08
4692 4787 2.481441 CTATGCCATGCCCCTAGGATA 58.519 52.381 11.48 0.00 33.47 2.59
4693 4788 1.293062 CTATGCCATGCCCCTAGGAT 58.707 55.000 11.48 0.00 33.47 3.24
4694 4789 0.842030 CCTATGCCATGCCCCTAGGA 60.842 60.000 11.48 0.00 32.36 2.94
4695 4790 1.687612 CCTATGCCATGCCCCTAGG 59.312 63.158 0.06 0.06 0.00 3.02
4696 4791 1.687612 CCCTATGCCATGCCCCTAG 59.312 63.158 0.00 0.00 0.00 3.02
4697 4792 2.538141 GCCCTATGCCATGCCCCTA 61.538 63.158 0.00 0.00 0.00 3.53
4698 4793 3.907130 GCCCTATGCCATGCCCCT 61.907 66.667 0.00 0.00 0.00 4.79
4700 4795 4.586235 ACGCCCTATGCCATGCCC 62.586 66.667 0.00 0.00 36.24 5.36
4701 4796 3.289834 CACGCCCTATGCCATGCC 61.290 66.667 0.00 0.00 36.24 4.40
4702 4797 3.289834 CCACGCCCTATGCCATGC 61.290 66.667 0.00 0.00 36.24 4.06
4703 4798 0.751277 TTTCCACGCCCTATGCCATG 60.751 55.000 0.00 0.00 36.24 3.66
4704 4799 0.033601 TTTTCCACGCCCTATGCCAT 60.034 50.000 0.00 0.00 36.24 4.40
4705 4800 0.033601 ATTTTCCACGCCCTATGCCA 60.034 50.000 0.00 0.00 36.24 4.92
4706 4801 0.668535 GATTTTCCACGCCCTATGCC 59.331 55.000 0.00 0.00 36.24 4.40
4707 4802 1.680338 AGATTTTCCACGCCCTATGC 58.320 50.000 0.00 0.00 0.00 3.14
4708 4803 4.320494 GCATAAGATTTTCCACGCCCTATG 60.320 45.833 0.00 0.00 0.00 2.23
4709 4804 3.821033 GCATAAGATTTTCCACGCCCTAT 59.179 43.478 0.00 0.00 0.00 2.57
4710 4805 3.118038 AGCATAAGATTTTCCACGCCCTA 60.118 43.478 0.00 0.00 0.00 3.53
4711 4806 2.024414 GCATAAGATTTTCCACGCCCT 58.976 47.619 0.00 0.00 0.00 5.19
4712 4807 2.024414 AGCATAAGATTTTCCACGCCC 58.976 47.619 0.00 0.00 0.00 6.13
4713 4808 2.033424 GGAGCATAAGATTTTCCACGCC 59.967 50.000 0.00 0.00 0.00 5.68
4714 4809 2.033424 GGGAGCATAAGATTTTCCACGC 59.967 50.000 0.00 0.00 0.00 5.34
4715 4810 2.618709 GGGGAGCATAAGATTTTCCACG 59.381 50.000 0.00 0.00 0.00 4.94
4716 4811 2.618709 CGGGGAGCATAAGATTTTCCAC 59.381 50.000 0.00 0.00 0.00 4.02
4717 4812 2.422803 CCGGGGAGCATAAGATTTTCCA 60.423 50.000 0.00 0.00 0.00 3.53
4718 4813 2.230660 CCGGGGAGCATAAGATTTTCC 58.769 52.381 0.00 0.00 0.00 3.13
4719 4814 2.230660 CCCGGGGAGCATAAGATTTTC 58.769 52.381 14.71 0.00 0.00 2.29
4720 4815 1.569072 ACCCGGGGAGCATAAGATTTT 59.431 47.619 27.92 0.00 0.00 1.82
4721 4816 1.143073 GACCCGGGGAGCATAAGATTT 59.857 52.381 27.92 0.00 0.00 2.17
4722 4817 0.765510 GACCCGGGGAGCATAAGATT 59.234 55.000 27.92 0.00 0.00 2.40
4723 4818 1.128188 GGACCCGGGGAGCATAAGAT 61.128 60.000 27.92 0.00 0.00 2.40
4724 4819 1.764854 GGACCCGGGGAGCATAAGA 60.765 63.158 27.92 0.00 0.00 2.10
4725 4820 2.819284 GGGACCCGGGGAGCATAAG 61.819 68.421 27.92 0.00 0.00 1.73
4726 4821 2.770904 GGGACCCGGGGAGCATAA 60.771 66.667 27.92 0.00 0.00 1.90
4727 4822 3.644465 TTGGGACCCGGGGAGCATA 62.644 63.158 27.92 2.49 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.