AutoCloner

Multiple sequence alignment - TraesCS4B01G266500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G266500	chr4B	100.000	3607	0	0	1	3607	538672506	538676112	0.000000e+00	6661.0
1	TraesCS4B01G266500	chr4B	93.774	2104	100	13	665	2764	538270395	538268319	0.000000e+00	3131.0
2	TraesCS4B01G266500	chr4B	85.856	1308	137	23	639	1920	538384975	538386260	0.000000e+00	1347.0
3	TraesCS4B01G266500	chr4B	90.418	741	36	15	2843	3560	538268122	538267394	0.000000e+00	942.0
4	TraesCS4B01G266500	chr4B	83.624	916	100	27	1992	2877	538386260	538387155	0.000000e+00	815.0
5	TraesCS4B01G266500	chr4B	79.545	1056	190	20	662	1702	568410008	568411052	0.000000e+00	730.0
6	TraesCS4B01G266500	chr4B	78.966	1103	194	29	665	1749	568339567	568340649	0.000000e+00	717.0
7	TraesCS4B01G266500	chr4B	83.528	771	94	19	2119	2873	538372079	538372832	0.000000e+00	689.0
8	TraesCS4B01G266500	chr4B	84.906	636	62	13	2955	3560	538387562	538388193	2.380000e-171	612.0
9	TraesCS4B01G266500	chr4B	82.542	716	81	20	2874	3560	538373193	538373893	1.120000e-164	590.0
10	TraesCS4B01G266500	chr4B	95.349	344	10	2	318	655	538383781	538384124	3.170000e-150	542.0
11	TraesCS4B01G266500	chr4B	77.204	329	55	13	2812	3134	568411804	568412118	1.330000e-39	174.0
12	TraesCS4B01G266500	chr4B	74.790	476	70	23	2097	2554	568411062	568411505	6.190000e-38	169.0
13	TraesCS4B01G266500	chr4B	81.068	206	15	12	117	299	538383511	538383715	3.750000e-30	143.0
14	TraesCS4B01G266500	chr4A	96.561	2123	69	3	665	2783	31621475	31623597	0.000000e+00	3513.0
15	TraesCS4B01G266500	chr4A	91.882	1971	105	23	418	2385	31596776	31594858	0.000000e+00	2702.0
16	TraesCS4B01G266500	chr4A	94.723	1156	57	4	2407	3560	31594582	31593429	0.000000e+00	1794.0
17	TraesCS4B01G266500	chr4A	90.663	739	37	11	2843	3560	31623595	31624322	0.000000e+00	953.0
18	TraesCS4B01G266500	chr4A	87.143	280	20	8	30	301	31597676	31597405	1.630000e-78	303.0
19	TraesCS4B01G266500	chr4D	96.002	2126	77	6	665	2783	436379165	436377041	0.000000e+00	3448.0
20	TraesCS4B01G266500	chr4D	94.111	1715	91	5	706	2415	436836758	436838467	0.000000e+00	2599.0
21	TraesCS4B01G266500	chr4D	87.644	1044	119	3	662	1702	436697053	436698089	0.000000e+00	1205.0
22	TraesCS4B01G266500	chr4D	81.995	872	106	26	1830	2671	436698205	436699055	0.000000e+00	693.0
23	TraesCS4B01G266500	chr4D	84.262	718	74	21	2874	3560	436713613	436714322	0.000000e+00	664.0
24	TraesCS4B01G266500	chr4D	95.685	394	16	1	3168	3560	436376659	436376266	1.830000e-177	632.0
25	TraesCS4B01G266500	chr4D	94.340	371	16	4	3194	3560	436874044	436874413	6.760000e-157	564.0
26	TraesCS4B01G266500	chr4D	94.247	365	20	1	351	715	436812556	436812919	1.130000e-154	556.0
27	TraesCS4B01G266500	chr4D	92.683	328	24	0	2419	2746	436862541	436862868	1.170000e-129	473.0
28	TraesCS4B01G266500	chr4D	91.420	338	9	9	1	319	436811899	436812235	2.560000e-121	446.0
29	TraesCS4B01G266500	chr4D	87.366	372	25	13	2843	3197	436872653	436873019	1.210000e-109	407.0
30	TraesCS4B01G266500	chr4D	92.975	242	14	3	2843	3082	436377043	436376803	2.060000e-92	350.0
31	TraesCS4B01G266500	chr4D	87.179	195	22	3	2682	2873	436713051	436713245	6.060000e-53	219.0
32	TraesCS4B01G266500	chr4D	88.148	135	15	1	3427	3560	436722133	436722267	3.730000e-35	159.0
33	TraesCS4B01G266500	chr4D	82.051	195	28	6	2097	2287	455319654	455319845	3.730000e-35	159.0
34	TraesCS4B01G266500	chr4D	97.143	35	1	0	318	352	436812306	436812340	3.890000e-05	60.2
35	TraesCS4B01G266500	chr3A	95.082	61	2	1	3548	3607	55217177	55217117	1.070000e-15	95.3
36	TraesCS4B01G266500	chr2B	98.148	54	1	0	3554	3607	230293512	230293565	1.070000e-15	95.3
37	TraesCS4B01G266500	chr5A	98.113	53	1	0	3555	3607	597672263	597672315	3.830000e-15	93.5
38	TraesCS4B01G266500	chr6D	98.077	52	1	0	3556	3607	452939012	452939063	1.380000e-14	91.6
39	TraesCS4B01G266500	chr5B	98.077	52	1	0	3556	3607	311560218	311560167	1.380000e-14	91.6
40	TraesCS4B01G266500	chr1B	98.077	52	1	0	3556	3607	142723454	142723505	1.380000e-14	91.6
41	TraesCS4B01G266500	chr1A	98.077	52	1	0	3556	3607	591941727	591941778	1.380000e-14	91.6
42	TraesCS4B01G266500	chr5D	94.737	57	3	0	3551	3607	225253278	225253222	4.960000e-14	89.8
43	TraesCS4B01G266500	chr3D	90.909	66	4	2	3544	3607	472726663	472726598	1.780000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G266500	chr4B	538672506	538676112	3606	False	6661.000000	6661	100.000000	1	3607	1	chr4B.!!$F1	3606
1	TraesCS4B01G266500	chr4B	538267394	538270395	3001	True	2036.500000	3131	92.096000	665	3560	2	chr4B.!!$R1	2895
2	TraesCS4B01G266500	chr4B	568339567	568340649	1082	False	717.000000	717	78.966000	665	1749	1	chr4B.!!$F2	1084
3	TraesCS4B01G266500	chr4B	538383511	538388193	4682	False	691.800000	1347	86.160600	117	3560	5	chr4B.!!$F4	3443
4	TraesCS4B01G266500	chr4B	538372079	538373893	1814	False	639.500000	689	83.035000	2119	3560	2	chr4B.!!$F3	1441
5	TraesCS4B01G266500	chr4B	568410008	568412118	2110	False	357.666667	730	77.179667	662	3134	3	chr4B.!!$F5	2472
6	TraesCS4B01G266500	chr4A	31621475	31624322	2847	False	2233.000000	3513	93.612000	665	3560	2	chr4A.!!$F1	2895
7	TraesCS4B01G266500	chr4A	31593429	31597676	4247	True	1599.666667	2702	91.249333	30	3560	3	chr4A.!!$R1	3530
8	TraesCS4B01G266500	chr4D	436836758	436838467	1709	False	2599.000000	2599	94.111000	706	2415	1	chr4D.!!$F2	1709
9	TraesCS4B01G266500	chr4D	436376266	436379165	2899	True	1476.666667	3448	94.887333	665	3560	3	chr4D.!!$R1	2895
10	TraesCS4B01G266500	chr4D	436697053	436699055	2002	False	949.000000	1205	84.819500	662	2671	2	chr4D.!!$F5	2009
11	TraesCS4B01G266500	chr4D	436872653	436874413	1760	False	485.500000	564	90.853000	2843	3560	2	chr4D.!!$F8	717
12	TraesCS4B01G266500	chr4D	436713051	436714322	1271	False	441.500000	664	85.720500	2682	3560	2	chr4D.!!$F6	878
13	TraesCS4B01G266500	chr4D	436811899	436812919	1020	False	354.066667	556	94.270000	1	715	3	chr4D.!!$F7	714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
788	2444	0.178921	TCCTCTTCCTCCACACAGCT	60.179	55.0	0.00	0.0	0.0	4.24	F
1505	3172	0.030638	GCACAGTGGCGTCAACAATT	59.969	50.0	1.84	0.0	0.0	2.32	F
1671	3345	0.106619	ACGTGTTTGGTTGCCCCTTA	60.107	50.0	0.00	0.0	0.0	2.69	F
2494	4498	0.108233	CCGGCAAAATTGGATGGTGG	60.108	55.0	0.00	0.0	0.0	4.61	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1719	3416	0.532862	CTACTTATGGCTGGGCACGG	60.533	60.000	0.0	0.0	0.00	4.94	R
2494	4498	1.334869	CCAAACCAGCACACACTCTTC	59.665	52.381	0.0	0.0	0.00	2.87	R
2502	4506	1.684386	CCCTTTGCCAAACCAGCACA	61.684	55.000	0.0	0.0	40.69	4.57	R
3562	7370	6.542370	ACGTTCTTATATTTTGGGACAGATGG	59.458	38.462	0.0	0.0	42.39	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
119	123	8.744652	ACTCGTCTTATTCTGCAAGCTATATAT	58.255	33.333	0.00	0.00	0.00	0.86
604	1391	2.099141	TTCTTGAACTCATCCAGCGG	57.901	50.000	0.00	0.00	0.00	5.52
605	1392	0.391661	TCTTGAACTCATCCAGCGGC	60.392	55.000	0.00	0.00	0.00	6.53
606	1393	1.699656	CTTGAACTCATCCAGCGGCG	61.700	60.000	0.51	0.51	0.00	6.46
788	2444	0.178921	TCCTCTTCCTCCACACAGCT	60.179	55.000	0.00	0.00	0.00	4.24
838	2494	0.389948	GTCAAGGCAATCGTCTCCGT	60.390	55.000	0.00	0.00	35.01	4.69
867	2523	1.945819	GCTCGCAATCCTTCTGGTTGA	60.946	52.381	0.00	0.00	34.23	3.18
996	2652	0.737715	ATCTTGACGAGTTGCGCTCC	60.738	55.000	9.73	0.00	46.04	4.70
1239	2900	6.021596	CGTTACTGGACAAATACAATGAAGC	58.978	40.000	0.00	0.00	0.00	3.86
1362	3023	1.951895	GCTGACACAATCCATGCCTCA	60.952	52.381	0.00	0.00	0.00	3.86
1484	3151	5.069119	ACAAAAACCAAAGGAGAAGATGGTC	59.931	40.000	0.00	0.00	45.15	4.02
1505	3172	0.030638	GCACAGTGGCGTCAACAATT	59.969	50.000	1.84	0.00	0.00	2.32
1586	3259	9.379791	GTTTATGTATGGTTAAAGCTACTGACT	57.620	33.333	0.00	0.00	0.00	3.41
1671	3345	0.106619	ACGTGTTTGGTTGCCCCTTA	60.107	50.000	0.00	0.00	0.00	2.69
1685	3359	6.468543	GTTGCCCCTTATTTCATTTTTACCA	58.531	36.000	0.00	0.00	0.00	3.25
1828	3526	4.764172	TCAATGGTTTTTGTTCCACCTTG	58.236	39.130	0.00	0.00	36.50	3.61
2065	3780	5.959618	AAGTTCTGTTATACAGTTTGGGC	57.040	39.130	6.71	0.00	46.03	5.36
2288	4015	1.537990	GCTCACCATGTTGCGGTTTTT	60.538	47.619	0.00	0.00	33.25	1.94
2429	4421	2.031157	GTGTGGTTGGTATCTTGTGTGC	60.031	50.000	0.00	0.00	0.00	4.57
2434	4426	1.533625	TGGTATCTTGTGTGCTTGGC	58.466	50.000	0.00	0.00	0.00	4.52
2442	4434	2.222007	TGTGTGCTTGGCATTTTGTC	57.778	45.000	0.00	0.00	41.91	3.18
2494	4498	0.108233	CCGGCAAAATTGGATGGTGG	60.108	55.000	0.00	0.00	0.00	4.61
2502	4506	3.814504	AATTGGATGGTGGAAGAGTGT	57.185	42.857	0.00	0.00	0.00	3.55
2624	4688	1.547372	TGAGTAACCCCTCAAGTACGC	59.453	52.381	0.00	0.00	38.49	4.42
2673	4738	5.665916	TGCTTGATCTCACTACTCATCAA	57.334	39.130	0.00	0.00	34.74	2.57
2710	4775	8.903820	GTTTCATTAGGTCCAAGCATTATAGTT	58.096	33.333	0.00	0.00	0.00	2.24
2795	5040	3.008835	TCTGGATCCAAATCTGCCAAG	57.991	47.619	17.00	0.00	32.12	3.61
2941	5582	4.422073	TGCTCTCAAACCGAATATGGAT	57.578	40.909	0.00	0.00	0.00	3.41
2942	5583	4.129380	TGCTCTCAAACCGAATATGGATG	58.871	43.478	0.00	0.00	0.00	3.51
3070	5728	5.195940	CCTTTTGGGAGAGATGCTCAATTA	58.804	41.667	0.00	0.00	45.81	1.40
3133	5902	7.337689	TCCATTGATGAGTTGTTTCCTTGATAG	59.662	37.037	0.00	0.00	0.00	2.08
3138	5907	6.861065	TGAGTTGTTTCCTTGATAGTGTTC	57.139	37.500	0.00	0.00	0.00	3.18
3175	5949	5.865085	ACTTGAACTAGCCAGTTGATGTTA	58.135	37.500	1.07	0.00	45.18	2.41
3248	7053	5.570344	TCATTGCATGTTTTTGTTGCTTTG	58.430	33.333	0.00	0.00	37.28	2.77
3430	7236	1.153066	TGCTCGGAAGTTTGGTGCA	60.153	52.632	0.00	0.00	0.00	4.57
3438	7244	1.963515	GAAGTTTGGTGCATTGGGTCT	59.036	47.619	0.00	0.00	0.00	3.85
3560	7368	6.978659	TCATCGACACATAAGTTTCCATCTAC	59.021	38.462	0.00	0.00	0.00	2.59
3561	7369	6.525578	TCGACACATAAGTTTCCATCTACT	57.474	37.500	0.00	0.00	0.00	2.57
3562	7370	6.561614	TCGACACATAAGTTTCCATCTACTC	58.438	40.000	0.00	0.00	0.00	2.59
3563	7371	5.749109	CGACACATAAGTTTCCATCTACTCC	59.251	44.000	0.00	0.00	0.00	3.85
3564	7372	6.620877	ACACATAAGTTTCCATCTACTCCA	57.379	37.500	0.00	0.00	0.00	3.86
3565	7373	7.200434	ACACATAAGTTTCCATCTACTCCAT	57.800	36.000	0.00	0.00	0.00	3.41
3566	7374	7.275920	ACACATAAGTTTCCATCTACTCCATC	58.724	38.462	0.00	0.00	0.00	3.51
3567	7375	7.126421	ACACATAAGTTTCCATCTACTCCATCT	59.874	37.037	0.00	0.00	0.00	2.90
3568	7376	7.440556	CACATAAGTTTCCATCTACTCCATCTG	59.559	40.741	0.00	0.00	0.00	2.90
3569	7377	7.126421	ACATAAGTTTCCATCTACTCCATCTGT	59.874	37.037	0.00	0.00	0.00	3.41
3570	7378	5.606348	AGTTTCCATCTACTCCATCTGTC	57.394	43.478	0.00	0.00	0.00	3.51
3571	7379	4.407296	AGTTTCCATCTACTCCATCTGTCC	59.593	45.833	0.00	0.00	0.00	4.02
3572	7380	2.964209	TCCATCTACTCCATCTGTCCC	58.036	52.381	0.00	0.00	0.00	4.46
3573	7381	2.247372	TCCATCTACTCCATCTGTCCCA	59.753	50.000	0.00	0.00	0.00	4.37
3574	7382	3.041211	CCATCTACTCCATCTGTCCCAA	58.959	50.000	0.00	0.00	0.00	4.12
3575	7383	3.455910	CCATCTACTCCATCTGTCCCAAA	59.544	47.826	0.00	0.00	0.00	3.28
3576	7384	4.080356	CCATCTACTCCATCTGTCCCAAAA	60.080	45.833	0.00	0.00	0.00	2.44
3577	7385	5.398353	CCATCTACTCCATCTGTCCCAAAAT	60.398	44.000	0.00	0.00	0.00	1.82
3578	7386	6.183361	CCATCTACTCCATCTGTCCCAAAATA	60.183	42.308	0.00	0.00	0.00	1.40
3579	7387	7.456725	CATCTACTCCATCTGTCCCAAAATAT	58.543	38.462	0.00	0.00	0.00	1.28
3580	7388	8.597167	CATCTACTCCATCTGTCCCAAAATATA	58.403	37.037	0.00	0.00	0.00	0.86
3581	7389	8.561536	TCTACTCCATCTGTCCCAAAATATAA	57.438	34.615	0.00	0.00	0.00	0.98
3582	7390	8.651389	TCTACTCCATCTGTCCCAAAATATAAG	58.349	37.037	0.00	0.00	0.00	1.73
3583	7391	7.451731	ACTCCATCTGTCCCAAAATATAAGA	57.548	36.000	0.00	0.00	0.00	2.10
3584	7392	7.872138	ACTCCATCTGTCCCAAAATATAAGAA	58.128	34.615	0.00	0.00	0.00	2.52
3585	7393	7.775561	ACTCCATCTGTCCCAAAATATAAGAAC	59.224	37.037	0.00	0.00	0.00	3.01
3586	7394	6.765989	TCCATCTGTCCCAAAATATAAGAACG	59.234	38.462	0.00	0.00	0.00	3.95
3587	7395	6.542370	CCATCTGTCCCAAAATATAAGAACGT	59.458	38.462	0.00	0.00	0.00	3.99
3588	7396	7.067008	CCATCTGTCCCAAAATATAAGAACGTT	59.933	37.037	0.00	0.00	0.00	3.99
3589	7397	7.989416	TCTGTCCCAAAATATAAGAACGTTT	57.011	32.000	0.46	0.00	0.00	3.60
3590	7398	8.398878	TCTGTCCCAAAATATAAGAACGTTTT	57.601	30.769	0.46	0.00	0.00	2.43
3591	7399	8.852135	TCTGTCCCAAAATATAAGAACGTTTTT	58.148	29.630	9.22	9.22	0.00	1.94
3605	7413	8.707938	AAGAACGTTTTTAACACTACACTAGT	57.292	30.769	0.46	0.00	40.28	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
152	157	1.070786	GTTTGCTCCGTGACCTCCA	59.929	57.895	0.00	0.00	0.00	3.86
303	335	1.893801	ACGGGACTTGATCGTCTCTTT	59.106	47.619	0.03	0.00	32.14	2.52
319	351	4.514401	AGAAACTAAAGCTATGGAACGGG	58.486	43.478	0.00	0.00	0.00	5.28
430	1216	9.986833	CCTTCAAACTTAAATTTGTTTTCTTGG	57.013	29.630	9.05	0.89	39.97	3.61
450	1236	2.360191	GGCCCTCCATGCCTTCAA	59.640	61.111	0.00	0.00	45.70	2.69
604	1391	1.664965	AAGTCTGAAGTGGACGCGC	60.665	57.895	5.73	0.00	38.58	6.86
605	1392	0.318699	TCAAGTCTGAAGTGGACGCG	60.319	55.000	3.53	3.53	38.58	6.01
606	1393	1.423395	CTCAAGTCTGAAGTGGACGC	58.577	55.000	0.00	0.00	38.58	5.19
788	2444	2.786777	TGTCACGAGTTAGCACCTCTA	58.213	47.619	0.00	0.00	0.00	2.43
838	2494	3.179443	AGGATTGCGAGCGAAAATAGA	57.821	42.857	0.00	0.00	0.00	1.98
996	2652	5.242393	AGTTGAGAAAACTCACATCATTGGG	59.758	40.000	0.00	0.00	32.47	4.12
1191	2852	7.928706	ACGCTTGAACTAATAAGCTGATATTCT	59.071	33.333	0.00	0.00	45.34	2.40
1207	2868	2.902705	TGTCCAGTAACGCTTGAACT	57.097	45.000	0.00	0.00	0.00	3.01
1362	3023	9.158233	CAAGTTCATATGCAAAATCCTGAAAAT	57.842	29.630	0.00	0.00	0.00	1.82
1484	3151	1.713937	TTGTTGACGCCACTGTGCAG	61.714	55.000	1.29	0.71	0.00	4.41
1671	3345	9.258629	TGGAAGAGATGATGGTAAAAATGAAAT	57.741	29.630	0.00	0.00	0.00	2.17
1685	3359	7.628234	AGACATTAAACAGTGGAAGAGATGAT	58.372	34.615	0.00	0.00	0.00	2.45
1719	3416	0.532862	CTACTTATGGCTGGGCACGG	60.533	60.000	0.00	0.00	0.00	4.94
1828	3526	8.723942	ACTGTATGAATGAACAGAAGTTATCC	57.276	34.615	9.30	0.00	44.79	2.59
2065	3780	3.270027	TGAAGGGCAGATAAATGTGACG	58.730	45.455	0.00	0.00	27.92	4.35
2110	3834	5.992217	GGGCATGAACTACCTTAGATGTTAG	59.008	44.000	0.00	0.00	0.00	2.34
2183	3910	4.080356	TCCATAACTCAAGCAACCATAGCT	60.080	41.667	0.00	0.00	45.97	3.32
2288	4015	5.243060	CAGGGATAACATCACACCGTAGATA	59.757	44.000	0.00	0.00	34.29	1.98
2400	4376	6.599244	ACAAGATACCAACCACACAAGATATG	59.401	38.462	0.00	0.00	0.00	1.78
2429	4421	3.731652	TCAACCAGACAAAATGCCAAG	57.268	42.857	0.00	0.00	0.00	3.61
2434	4426	9.143631	GGAGAATAATTTCAACCAGACAAAATG	57.856	33.333	0.00	0.00	34.08	2.32
2442	4434	7.533426	CACTGAAGGAGAATAATTTCAACCAG	58.467	38.462	0.00	0.00	34.88	4.00
2494	4498	1.334869	CCAAACCAGCACACACTCTTC	59.665	52.381	0.00	0.00	0.00	2.87
2502	4506	1.684386	CCCTTTGCCAAACCAGCACA	61.684	55.000	0.00	0.00	40.69	4.57
2673	4738	5.491982	GACCTAATGAAACACTGAGGACAT	58.508	41.667	0.00	0.00	0.00	3.06
2710	4775	6.132791	TGCAACCGTACAAATTGTAAGAAA	57.867	33.333	18.16	0.00	34.90	2.52
2771	5016	2.551459	GGCAGATTTGGATCCAGATTCG	59.449	50.000	18.31	13.25	32.44	3.34
2795	5040	5.043248	CACAAAGTGATGGGAAAAGACAAC	58.957	41.667	0.00	0.00	35.23	3.32
3070	5728	8.212317	GGCAATTTGGCATTATGATAAAAACT	57.788	30.769	17.26	0.00	43.14	2.66
3175	5949	9.614792	CTAACCTAAAGAATAGTTATGCCAAGT	57.385	33.333	0.00	0.00	0.00	3.16
3248	7053	2.863153	CGGCACTACAAGCTGCAC	59.137	61.111	1.02	0.00	34.90	4.57
3291	7097	8.190326	TCCAAGATACTAGAAACTGAACAAGA	57.810	34.615	0.00	0.00	0.00	3.02
3430	7236	7.450014	TGAAACATTACACATTACAGACCCAAT	59.550	33.333	0.00	0.00	0.00	3.16
3560	7368	7.041780	CGTTCTTATATTTTGGGACAGATGGAG	60.042	40.741	0.00	0.00	42.39	3.86
3561	7369	6.765989	CGTTCTTATATTTTGGGACAGATGGA	59.234	38.462	0.00	0.00	42.39	3.41
3562	7370	6.542370	ACGTTCTTATATTTTGGGACAGATGG	59.458	38.462	0.00	0.00	42.39	3.51
3563	7371	7.553881	ACGTTCTTATATTTTGGGACAGATG	57.446	36.000	0.00	0.00	42.39	2.90
3564	7372	8.575649	AAACGTTCTTATATTTTGGGACAGAT	57.424	30.769	0.00	0.00	42.39	2.90
3565	7373	7.989416	AAACGTTCTTATATTTTGGGACAGA	57.011	32.000	0.00	0.00	42.39	3.41
3579	7387	9.801873	ACTAGTGTAGTGTTAAAAACGTTCTTA	57.198	29.630	0.00	0.00	37.69	2.10
3580	7388	8.707938	ACTAGTGTAGTGTTAAAAACGTTCTT	57.292	30.769	0.00	0.00	37.69	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.