Multiple sequence alignment - TraesCS4B01G266500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G266500 chr4B 100.000 3607 0 0 1 3607 538672506 538676112 0.000000e+00 6661.0
1 TraesCS4B01G266500 chr4B 93.774 2104 100 13 665 2764 538270395 538268319 0.000000e+00 3131.0
2 TraesCS4B01G266500 chr4B 85.856 1308 137 23 639 1920 538384975 538386260 0.000000e+00 1347.0
3 TraesCS4B01G266500 chr4B 90.418 741 36 15 2843 3560 538268122 538267394 0.000000e+00 942.0
4 TraesCS4B01G266500 chr4B 83.624 916 100 27 1992 2877 538386260 538387155 0.000000e+00 815.0
5 TraesCS4B01G266500 chr4B 79.545 1056 190 20 662 1702 568410008 568411052 0.000000e+00 730.0
6 TraesCS4B01G266500 chr4B 78.966 1103 194 29 665 1749 568339567 568340649 0.000000e+00 717.0
7 TraesCS4B01G266500 chr4B 83.528 771 94 19 2119 2873 538372079 538372832 0.000000e+00 689.0
8 TraesCS4B01G266500 chr4B 84.906 636 62 13 2955 3560 538387562 538388193 2.380000e-171 612.0
9 TraesCS4B01G266500 chr4B 82.542 716 81 20 2874 3560 538373193 538373893 1.120000e-164 590.0
10 TraesCS4B01G266500 chr4B 95.349 344 10 2 318 655 538383781 538384124 3.170000e-150 542.0
11 TraesCS4B01G266500 chr4B 77.204 329 55 13 2812 3134 568411804 568412118 1.330000e-39 174.0
12 TraesCS4B01G266500 chr4B 74.790 476 70 23 2097 2554 568411062 568411505 6.190000e-38 169.0
13 TraesCS4B01G266500 chr4B 81.068 206 15 12 117 299 538383511 538383715 3.750000e-30 143.0
14 TraesCS4B01G266500 chr4A 96.561 2123 69 3 665 2783 31621475 31623597 0.000000e+00 3513.0
15 TraesCS4B01G266500 chr4A 91.882 1971 105 23 418 2385 31596776 31594858 0.000000e+00 2702.0
16 TraesCS4B01G266500 chr4A 94.723 1156 57 4 2407 3560 31594582 31593429 0.000000e+00 1794.0
17 TraesCS4B01G266500 chr4A 90.663 739 37 11 2843 3560 31623595 31624322 0.000000e+00 953.0
18 TraesCS4B01G266500 chr4A 87.143 280 20 8 30 301 31597676 31597405 1.630000e-78 303.0
19 TraesCS4B01G266500 chr4D 96.002 2126 77 6 665 2783 436379165 436377041 0.000000e+00 3448.0
20 TraesCS4B01G266500 chr4D 94.111 1715 91 5 706 2415 436836758 436838467 0.000000e+00 2599.0
21 TraesCS4B01G266500 chr4D 87.644 1044 119 3 662 1702 436697053 436698089 0.000000e+00 1205.0
22 TraesCS4B01G266500 chr4D 81.995 872 106 26 1830 2671 436698205 436699055 0.000000e+00 693.0
23 TraesCS4B01G266500 chr4D 84.262 718 74 21 2874 3560 436713613 436714322 0.000000e+00 664.0
24 TraesCS4B01G266500 chr4D 95.685 394 16 1 3168 3560 436376659 436376266 1.830000e-177 632.0
25 TraesCS4B01G266500 chr4D 94.340 371 16 4 3194 3560 436874044 436874413 6.760000e-157 564.0
26 TraesCS4B01G266500 chr4D 94.247 365 20 1 351 715 436812556 436812919 1.130000e-154 556.0
27 TraesCS4B01G266500 chr4D 92.683 328 24 0 2419 2746 436862541 436862868 1.170000e-129 473.0
28 TraesCS4B01G266500 chr4D 91.420 338 9 9 1 319 436811899 436812235 2.560000e-121 446.0
29 TraesCS4B01G266500 chr4D 87.366 372 25 13 2843 3197 436872653 436873019 1.210000e-109 407.0
30 TraesCS4B01G266500 chr4D 92.975 242 14 3 2843 3082 436377043 436376803 2.060000e-92 350.0
31 TraesCS4B01G266500 chr4D 87.179 195 22 3 2682 2873 436713051 436713245 6.060000e-53 219.0
32 TraesCS4B01G266500 chr4D 88.148 135 15 1 3427 3560 436722133 436722267 3.730000e-35 159.0
33 TraesCS4B01G266500 chr4D 82.051 195 28 6 2097 2287 455319654 455319845 3.730000e-35 159.0
34 TraesCS4B01G266500 chr4D 97.143 35 1 0 318 352 436812306 436812340 3.890000e-05 60.2
35 TraesCS4B01G266500 chr3A 95.082 61 2 1 3548 3607 55217177 55217117 1.070000e-15 95.3
36 TraesCS4B01G266500 chr2B 98.148 54 1 0 3554 3607 230293512 230293565 1.070000e-15 95.3
37 TraesCS4B01G266500 chr5A 98.113 53 1 0 3555 3607 597672263 597672315 3.830000e-15 93.5
38 TraesCS4B01G266500 chr6D 98.077 52 1 0 3556 3607 452939012 452939063 1.380000e-14 91.6
39 TraesCS4B01G266500 chr5B 98.077 52 1 0 3556 3607 311560218 311560167 1.380000e-14 91.6
40 TraesCS4B01G266500 chr1B 98.077 52 1 0 3556 3607 142723454 142723505 1.380000e-14 91.6
41 TraesCS4B01G266500 chr1A 98.077 52 1 0 3556 3607 591941727 591941778 1.380000e-14 91.6
42 TraesCS4B01G266500 chr5D 94.737 57 3 0 3551 3607 225253278 225253222 4.960000e-14 89.8
43 TraesCS4B01G266500 chr3D 90.909 66 4 2 3544 3607 472726663 472726598 1.780000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G266500 chr4B 538672506 538676112 3606 False 6661.000000 6661 100.000000 1 3607 1 chr4B.!!$F1 3606
1 TraesCS4B01G266500 chr4B 538267394 538270395 3001 True 2036.500000 3131 92.096000 665 3560 2 chr4B.!!$R1 2895
2 TraesCS4B01G266500 chr4B 568339567 568340649 1082 False 717.000000 717 78.966000 665 1749 1 chr4B.!!$F2 1084
3 TraesCS4B01G266500 chr4B 538383511 538388193 4682 False 691.800000 1347 86.160600 117 3560 5 chr4B.!!$F4 3443
4 TraesCS4B01G266500 chr4B 538372079 538373893 1814 False 639.500000 689 83.035000 2119 3560 2 chr4B.!!$F3 1441
5 TraesCS4B01G266500 chr4B 568410008 568412118 2110 False 357.666667 730 77.179667 662 3134 3 chr4B.!!$F5 2472
6 TraesCS4B01G266500 chr4A 31621475 31624322 2847 False 2233.000000 3513 93.612000 665 3560 2 chr4A.!!$F1 2895
7 TraesCS4B01G266500 chr4A 31593429 31597676 4247 True 1599.666667 2702 91.249333 30 3560 3 chr4A.!!$R1 3530
8 TraesCS4B01G266500 chr4D 436836758 436838467 1709 False 2599.000000 2599 94.111000 706 2415 1 chr4D.!!$F2 1709
9 TraesCS4B01G266500 chr4D 436376266 436379165 2899 True 1476.666667 3448 94.887333 665 3560 3 chr4D.!!$R1 2895
10 TraesCS4B01G266500 chr4D 436697053 436699055 2002 False 949.000000 1205 84.819500 662 2671 2 chr4D.!!$F5 2009
11 TraesCS4B01G266500 chr4D 436872653 436874413 1760 False 485.500000 564 90.853000 2843 3560 2 chr4D.!!$F8 717
12 TraesCS4B01G266500 chr4D 436713051 436714322 1271 False 441.500000 664 85.720500 2682 3560 2 chr4D.!!$F6 878
13 TraesCS4B01G266500 chr4D 436811899 436812919 1020 False 354.066667 556 94.270000 1 715 3 chr4D.!!$F7 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 2444 0.178921 TCCTCTTCCTCCACACAGCT 60.179 55.0 0.00 0.0 0.0 4.24 F
1505 3172 0.030638 GCACAGTGGCGTCAACAATT 59.969 50.0 1.84 0.0 0.0 2.32 F
1671 3345 0.106619 ACGTGTTTGGTTGCCCCTTA 60.107 50.0 0.00 0.0 0.0 2.69 F
2494 4498 0.108233 CCGGCAAAATTGGATGGTGG 60.108 55.0 0.00 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 3416 0.532862 CTACTTATGGCTGGGCACGG 60.533 60.000 0.0 0.0 0.00 4.94 R
2494 4498 1.334869 CCAAACCAGCACACACTCTTC 59.665 52.381 0.0 0.0 0.00 2.87 R
2502 4506 1.684386 CCCTTTGCCAAACCAGCACA 61.684 55.000 0.0 0.0 40.69 4.57 R
3562 7370 6.542370 ACGTTCTTATATTTTGGGACAGATGG 59.458 38.462 0.0 0.0 42.39 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 123 8.744652 ACTCGTCTTATTCTGCAAGCTATATAT 58.255 33.333 0.00 0.00 0.00 0.86
604 1391 2.099141 TTCTTGAACTCATCCAGCGG 57.901 50.000 0.00 0.00 0.00 5.52
605 1392 0.391661 TCTTGAACTCATCCAGCGGC 60.392 55.000 0.00 0.00 0.00 6.53
606 1393 1.699656 CTTGAACTCATCCAGCGGCG 61.700 60.000 0.51 0.51 0.00 6.46
788 2444 0.178921 TCCTCTTCCTCCACACAGCT 60.179 55.000 0.00 0.00 0.00 4.24
838 2494 0.389948 GTCAAGGCAATCGTCTCCGT 60.390 55.000 0.00 0.00 35.01 4.69
867 2523 1.945819 GCTCGCAATCCTTCTGGTTGA 60.946 52.381 0.00 0.00 34.23 3.18
996 2652 0.737715 ATCTTGACGAGTTGCGCTCC 60.738 55.000 9.73 0.00 46.04 4.70
1239 2900 6.021596 CGTTACTGGACAAATACAATGAAGC 58.978 40.000 0.00 0.00 0.00 3.86
1362 3023 1.951895 GCTGACACAATCCATGCCTCA 60.952 52.381 0.00 0.00 0.00 3.86
1484 3151 5.069119 ACAAAAACCAAAGGAGAAGATGGTC 59.931 40.000 0.00 0.00 45.15 4.02
1505 3172 0.030638 GCACAGTGGCGTCAACAATT 59.969 50.000 1.84 0.00 0.00 2.32
1586 3259 9.379791 GTTTATGTATGGTTAAAGCTACTGACT 57.620 33.333 0.00 0.00 0.00 3.41
1671 3345 0.106619 ACGTGTTTGGTTGCCCCTTA 60.107 50.000 0.00 0.00 0.00 2.69
1685 3359 6.468543 GTTGCCCCTTATTTCATTTTTACCA 58.531 36.000 0.00 0.00 0.00 3.25
1828 3526 4.764172 TCAATGGTTTTTGTTCCACCTTG 58.236 39.130 0.00 0.00 36.50 3.61
2065 3780 5.959618 AAGTTCTGTTATACAGTTTGGGC 57.040 39.130 6.71 0.00 46.03 5.36
2288 4015 1.537990 GCTCACCATGTTGCGGTTTTT 60.538 47.619 0.00 0.00 33.25 1.94
2429 4421 2.031157 GTGTGGTTGGTATCTTGTGTGC 60.031 50.000 0.00 0.00 0.00 4.57
2434 4426 1.533625 TGGTATCTTGTGTGCTTGGC 58.466 50.000 0.00 0.00 0.00 4.52
2442 4434 2.222007 TGTGTGCTTGGCATTTTGTC 57.778 45.000 0.00 0.00 41.91 3.18
2494 4498 0.108233 CCGGCAAAATTGGATGGTGG 60.108 55.000 0.00 0.00 0.00 4.61
2502 4506 3.814504 AATTGGATGGTGGAAGAGTGT 57.185 42.857 0.00 0.00 0.00 3.55
2624 4688 1.547372 TGAGTAACCCCTCAAGTACGC 59.453 52.381 0.00 0.00 38.49 4.42
2673 4738 5.665916 TGCTTGATCTCACTACTCATCAA 57.334 39.130 0.00 0.00 34.74 2.57
2710 4775 8.903820 GTTTCATTAGGTCCAAGCATTATAGTT 58.096 33.333 0.00 0.00 0.00 2.24
2795 5040 3.008835 TCTGGATCCAAATCTGCCAAG 57.991 47.619 17.00 0.00 32.12 3.61
2941 5582 4.422073 TGCTCTCAAACCGAATATGGAT 57.578 40.909 0.00 0.00 0.00 3.41
2942 5583 4.129380 TGCTCTCAAACCGAATATGGATG 58.871 43.478 0.00 0.00 0.00 3.51
3070 5728 5.195940 CCTTTTGGGAGAGATGCTCAATTA 58.804 41.667 0.00 0.00 45.81 1.40
3133 5902 7.337689 TCCATTGATGAGTTGTTTCCTTGATAG 59.662 37.037 0.00 0.00 0.00 2.08
3138 5907 6.861065 TGAGTTGTTTCCTTGATAGTGTTC 57.139 37.500 0.00 0.00 0.00 3.18
3175 5949 5.865085 ACTTGAACTAGCCAGTTGATGTTA 58.135 37.500 1.07 0.00 45.18 2.41
3248 7053 5.570344 TCATTGCATGTTTTTGTTGCTTTG 58.430 33.333 0.00 0.00 37.28 2.77
3430 7236 1.153066 TGCTCGGAAGTTTGGTGCA 60.153 52.632 0.00 0.00 0.00 4.57
3438 7244 1.963515 GAAGTTTGGTGCATTGGGTCT 59.036 47.619 0.00 0.00 0.00 3.85
3560 7368 6.978659 TCATCGACACATAAGTTTCCATCTAC 59.021 38.462 0.00 0.00 0.00 2.59
3561 7369 6.525578 TCGACACATAAGTTTCCATCTACT 57.474 37.500 0.00 0.00 0.00 2.57
3562 7370 6.561614 TCGACACATAAGTTTCCATCTACTC 58.438 40.000 0.00 0.00 0.00 2.59
3563 7371 5.749109 CGACACATAAGTTTCCATCTACTCC 59.251 44.000 0.00 0.00 0.00 3.85
3564 7372 6.620877 ACACATAAGTTTCCATCTACTCCA 57.379 37.500 0.00 0.00 0.00 3.86
3565 7373 7.200434 ACACATAAGTTTCCATCTACTCCAT 57.800 36.000 0.00 0.00 0.00 3.41
3566 7374 7.275920 ACACATAAGTTTCCATCTACTCCATC 58.724 38.462 0.00 0.00 0.00 3.51
3567 7375 7.126421 ACACATAAGTTTCCATCTACTCCATCT 59.874 37.037 0.00 0.00 0.00 2.90
3568 7376 7.440556 CACATAAGTTTCCATCTACTCCATCTG 59.559 40.741 0.00 0.00 0.00 2.90
3569 7377 7.126421 ACATAAGTTTCCATCTACTCCATCTGT 59.874 37.037 0.00 0.00 0.00 3.41
3570 7378 5.606348 AGTTTCCATCTACTCCATCTGTC 57.394 43.478 0.00 0.00 0.00 3.51
3571 7379 4.407296 AGTTTCCATCTACTCCATCTGTCC 59.593 45.833 0.00 0.00 0.00 4.02
3572 7380 2.964209 TCCATCTACTCCATCTGTCCC 58.036 52.381 0.00 0.00 0.00 4.46
3573 7381 2.247372 TCCATCTACTCCATCTGTCCCA 59.753 50.000 0.00 0.00 0.00 4.37
3574 7382 3.041211 CCATCTACTCCATCTGTCCCAA 58.959 50.000 0.00 0.00 0.00 4.12
3575 7383 3.455910 CCATCTACTCCATCTGTCCCAAA 59.544 47.826 0.00 0.00 0.00 3.28
3576 7384 4.080356 CCATCTACTCCATCTGTCCCAAAA 60.080 45.833 0.00 0.00 0.00 2.44
3577 7385 5.398353 CCATCTACTCCATCTGTCCCAAAAT 60.398 44.000 0.00 0.00 0.00 1.82
3578 7386 6.183361 CCATCTACTCCATCTGTCCCAAAATA 60.183 42.308 0.00 0.00 0.00 1.40
3579 7387 7.456725 CATCTACTCCATCTGTCCCAAAATAT 58.543 38.462 0.00 0.00 0.00 1.28
3580 7388 8.597167 CATCTACTCCATCTGTCCCAAAATATA 58.403 37.037 0.00 0.00 0.00 0.86
3581 7389 8.561536 TCTACTCCATCTGTCCCAAAATATAA 57.438 34.615 0.00 0.00 0.00 0.98
3582 7390 8.651389 TCTACTCCATCTGTCCCAAAATATAAG 58.349 37.037 0.00 0.00 0.00 1.73
3583 7391 7.451731 ACTCCATCTGTCCCAAAATATAAGA 57.548 36.000 0.00 0.00 0.00 2.10
3584 7392 7.872138 ACTCCATCTGTCCCAAAATATAAGAA 58.128 34.615 0.00 0.00 0.00 2.52
3585 7393 7.775561 ACTCCATCTGTCCCAAAATATAAGAAC 59.224 37.037 0.00 0.00 0.00 3.01
3586 7394 6.765989 TCCATCTGTCCCAAAATATAAGAACG 59.234 38.462 0.00 0.00 0.00 3.95
3587 7395 6.542370 CCATCTGTCCCAAAATATAAGAACGT 59.458 38.462 0.00 0.00 0.00 3.99
3588 7396 7.067008 CCATCTGTCCCAAAATATAAGAACGTT 59.933 37.037 0.00 0.00 0.00 3.99
3589 7397 7.989416 TCTGTCCCAAAATATAAGAACGTTT 57.011 32.000 0.46 0.00 0.00 3.60
3590 7398 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
3591 7399 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
3605 7413 8.707938 AAGAACGTTTTTAACACTACACTAGT 57.292 30.769 0.46 0.00 40.28 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 157 1.070786 GTTTGCTCCGTGACCTCCA 59.929 57.895 0.00 0.00 0.00 3.86
303 335 1.893801 ACGGGACTTGATCGTCTCTTT 59.106 47.619 0.03 0.00 32.14 2.52
319 351 4.514401 AGAAACTAAAGCTATGGAACGGG 58.486 43.478 0.00 0.00 0.00 5.28
430 1216 9.986833 CCTTCAAACTTAAATTTGTTTTCTTGG 57.013 29.630 9.05 0.89 39.97 3.61
450 1236 2.360191 GGCCCTCCATGCCTTCAA 59.640 61.111 0.00 0.00 45.70 2.69
604 1391 1.664965 AAGTCTGAAGTGGACGCGC 60.665 57.895 5.73 0.00 38.58 6.86
605 1392 0.318699 TCAAGTCTGAAGTGGACGCG 60.319 55.000 3.53 3.53 38.58 6.01
606 1393 1.423395 CTCAAGTCTGAAGTGGACGC 58.577 55.000 0.00 0.00 38.58 5.19
788 2444 2.786777 TGTCACGAGTTAGCACCTCTA 58.213 47.619 0.00 0.00 0.00 2.43
838 2494 3.179443 AGGATTGCGAGCGAAAATAGA 57.821 42.857 0.00 0.00 0.00 1.98
996 2652 5.242393 AGTTGAGAAAACTCACATCATTGGG 59.758 40.000 0.00 0.00 32.47 4.12
1191 2852 7.928706 ACGCTTGAACTAATAAGCTGATATTCT 59.071 33.333 0.00 0.00 45.34 2.40
1207 2868 2.902705 TGTCCAGTAACGCTTGAACT 57.097 45.000 0.00 0.00 0.00 3.01
1362 3023 9.158233 CAAGTTCATATGCAAAATCCTGAAAAT 57.842 29.630 0.00 0.00 0.00 1.82
1484 3151 1.713937 TTGTTGACGCCACTGTGCAG 61.714 55.000 1.29 0.71 0.00 4.41
1671 3345 9.258629 TGGAAGAGATGATGGTAAAAATGAAAT 57.741 29.630 0.00 0.00 0.00 2.17
1685 3359 7.628234 AGACATTAAACAGTGGAAGAGATGAT 58.372 34.615 0.00 0.00 0.00 2.45
1719 3416 0.532862 CTACTTATGGCTGGGCACGG 60.533 60.000 0.00 0.00 0.00 4.94
1828 3526 8.723942 ACTGTATGAATGAACAGAAGTTATCC 57.276 34.615 9.30 0.00 44.79 2.59
2065 3780 3.270027 TGAAGGGCAGATAAATGTGACG 58.730 45.455 0.00 0.00 27.92 4.35
2110 3834 5.992217 GGGCATGAACTACCTTAGATGTTAG 59.008 44.000 0.00 0.00 0.00 2.34
2183 3910 4.080356 TCCATAACTCAAGCAACCATAGCT 60.080 41.667 0.00 0.00 45.97 3.32
2288 4015 5.243060 CAGGGATAACATCACACCGTAGATA 59.757 44.000 0.00 0.00 34.29 1.98
2400 4376 6.599244 ACAAGATACCAACCACACAAGATATG 59.401 38.462 0.00 0.00 0.00 1.78
2429 4421 3.731652 TCAACCAGACAAAATGCCAAG 57.268 42.857 0.00 0.00 0.00 3.61
2434 4426 9.143631 GGAGAATAATTTCAACCAGACAAAATG 57.856 33.333 0.00 0.00 34.08 2.32
2442 4434 7.533426 CACTGAAGGAGAATAATTTCAACCAG 58.467 38.462 0.00 0.00 34.88 4.00
2494 4498 1.334869 CCAAACCAGCACACACTCTTC 59.665 52.381 0.00 0.00 0.00 2.87
2502 4506 1.684386 CCCTTTGCCAAACCAGCACA 61.684 55.000 0.00 0.00 40.69 4.57
2673 4738 5.491982 GACCTAATGAAACACTGAGGACAT 58.508 41.667 0.00 0.00 0.00 3.06
2710 4775 6.132791 TGCAACCGTACAAATTGTAAGAAA 57.867 33.333 18.16 0.00 34.90 2.52
2771 5016 2.551459 GGCAGATTTGGATCCAGATTCG 59.449 50.000 18.31 13.25 32.44 3.34
2795 5040 5.043248 CACAAAGTGATGGGAAAAGACAAC 58.957 41.667 0.00 0.00 35.23 3.32
3070 5728 8.212317 GGCAATTTGGCATTATGATAAAAACT 57.788 30.769 17.26 0.00 43.14 2.66
3175 5949 9.614792 CTAACCTAAAGAATAGTTATGCCAAGT 57.385 33.333 0.00 0.00 0.00 3.16
3248 7053 2.863153 CGGCACTACAAGCTGCAC 59.137 61.111 1.02 0.00 34.90 4.57
3291 7097 8.190326 TCCAAGATACTAGAAACTGAACAAGA 57.810 34.615 0.00 0.00 0.00 3.02
3430 7236 7.450014 TGAAACATTACACATTACAGACCCAAT 59.550 33.333 0.00 0.00 0.00 3.16
3560 7368 7.041780 CGTTCTTATATTTTGGGACAGATGGAG 60.042 40.741 0.00 0.00 42.39 3.86
3561 7369 6.765989 CGTTCTTATATTTTGGGACAGATGGA 59.234 38.462 0.00 0.00 42.39 3.41
3562 7370 6.542370 ACGTTCTTATATTTTGGGACAGATGG 59.458 38.462 0.00 0.00 42.39 3.51
3563 7371 7.553881 ACGTTCTTATATTTTGGGACAGATG 57.446 36.000 0.00 0.00 42.39 2.90
3564 7372 8.575649 AAACGTTCTTATATTTTGGGACAGAT 57.424 30.769 0.00 0.00 42.39 2.90
3565 7373 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
3579 7387 9.801873 ACTAGTGTAGTGTTAAAAACGTTCTTA 57.198 29.630 0.00 0.00 37.69 2.10
3580 7388 8.707938 ACTAGTGTAGTGTTAAAAACGTTCTT 57.292 30.769 0.00 0.00 37.69 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.