Multiple sequence alignment - TraesCS4B01G266100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G266100 chr4B 100.000 4557 0 0 1 4557 537488284 537483728 0.000000e+00 8416.0
1 TraesCS4B01G266100 chr4B 96.364 55 2 0 4099 4153 537484132 537484078 1.750000e-14 91.6
2 TraesCS4B01G266100 chr4B 96.364 55 2 0 4153 4207 537484186 537484132 1.750000e-14 91.6
3 TraesCS4B01G266100 chr4D 92.679 3606 139 45 1 3560 435987942 435984416 0.000000e+00 5081.0
4 TraesCS4B01G266100 chr4D 79.393 791 100 38 3390 4150 435981595 435980838 2.450000e-137 499.0
5 TraesCS4B01G266100 chr4A 89.270 3765 199 86 498 4150 32049710 32053381 0.000000e+00 4525.0
6 TraesCS4B01G266100 chr4A 91.962 423 30 4 109 530 32049286 32049705 1.410000e-164 590.0
7 TraesCS4B01G266100 chr4A 89.831 177 17 1 1 176 32048898 32049074 4.590000e-55 226.0
8 TraesCS4B01G266100 chr4A 80.976 205 34 4 4342 4544 687210992 687211193 1.700000e-34 158.0
9 TraesCS4B01G266100 chr2B 92.834 307 21 1 1519 1825 325973414 325973109 1.160000e-120 444.0
10 TraesCS4B01G266100 chr5B 91.080 213 18 1 4346 4557 596511856 596511644 2.070000e-73 287.0
11 TraesCS4B01G266100 chr7B 90.995 211 15 4 4348 4557 633927561 633927768 9.650000e-72 281.0
12 TraesCS4B01G266100 chr1B 89.815 216 18 3 4346 4557 543184490 543184705 1.620000e-69 274.0
13 TraesCS4B01G266100 chr5A 89.100 211 22 1 4348 4557 631702383 631702593 1.260000e-65 261.0
14 TraesCS4B01G266100 chr5A 80.769 208 35 4 4342 4547 631704048 631703844 1.700000e-34 158.0
15 TraesCS4B01G266100 chrUn 92.763 152 9 2 4351 4501 61003307 61003157 7.680000e-53 219.0
16 TraesCS4B01G266100 chr6B 91.216 148 11 2 4346 4492 42376679 42376533 2.780000e-47 200.0
17 TraesCS4B01G266100 chr6B 80.275 218 38 4 4342 4557 42319657 42319871 4.720000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G266100 chr4B 537483728 537488284 4556 True 8416.000000 8416 100.000000 1 4557 1 chr4B.!!$R1 4556
1 TraesCS4B01G266100 chr4D 435980838 435987942 7104 True 2790.000000 5081 86.036000 1 4150 2 chr4D.!!$R1 4149
2 TraesCS4B01G266100 chr4A 32048898 32053381 4483 False 1780.333333 4525 90.354333 1 4150 3 chr4A.!!$F2 4149

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
836 1174 0.623194 TCCCCCGATCTTTGCAATCA 59.377 50.0 0.0 0.0 0.0 2.57 F
2141 2540 0.106217 GCTCCTCCAGACTCCTAGCT 60.106 60.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2447 2877 0.034059 GCGACCACCAGCAGCTATAT 59.966 55.0 0.00 0.0 0.0 0.86 R
3907 7405 0.109319 GCACGATCGGCCACAAAATT 60.109 50.0 20.98 0.0 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 2.435693 GCGGTGGTAGAGGAGCCAT 61.436 63.158 0.00 0.00 37.09 4.40
91 92 1.202428 GGTAGAGGAGCCATCGTTGTC 60.202 57.143 0.00 0.00 0.00 3.18
139 420 3.071459 GCGCAACGATGTGGTCTCG 62.071 63.158 0.30 0.00 41.77 4.04
153 434 1.108776 GTCTCGTGCACATAGGGGTA 58.891 55.000 18.64 0.00 0.00 3.69
192 473 1.762460 GGGATCTTGAGCGGGAGGA 60.762 63.158 0.00 0.00 0.00 3.71
196 477 1.388065 ATCTTGAGCGGGAGGAGTCG 61.388 60.000 0.00 0.00 0.00 4.18
211 492 1.175983 AGTCGGAGGATGGATCTCGC 61.176 60.000 0.00 0.00 32.34 5.03
232 513 2.049959 GCGACATGATGAGATCTCGTG 58.950 52.381 22.20 16.57 36.04 4.35
239 520 2.302260 GATGAGATCTCGTGTCTGGGA 58.698 52.381 22.20 0.00 0.00 4.37
241 522 2.095461 TGAGATCTCGTGTCTGGGAAG 58.905 52.381 17.76 0.00 0.00 3.46
246 527 2.928396 CGTGTCTGGGAAGGGGGT 60.928 66.667 0.00 0.00 0.00 4.95
260 541 2.511600 GGGTTGGATCTCGCGTGG 60.512 66.667 5.77 0.01 0.00 4.94
263 544 1.815421 GTTGGATCTCGCGTGGCAT 60.815 57.895 5.77 0.00 0.00 4.40
280 561 2.812591 GGCATGATGAGACCTTATGCAG 59.187 50.000 0.00 0.00 44.33 4.41
418 699 3.324556 TGGGGCAGGATTTTCTTTCTTTG 59.675 43.478 0.00 0.00 0.00 2.77
421 702 5.011635 GGGGCAGGATTTTCTTTCTTTGTAA 59.988 40.000 0.00 0.00 0.00 2.41
425 706 7.305474 GCAGGATTTTCTTTCTTTGTAATCGA 58.695 34.615 0.00 0.00 0.00 3.59
437 718 1.066071 TGTAATCGATGTTTGCCCCGA 60.066 47.619 0.00 0.00 35.43 5.14
470 752 4.016444 AGGCAATACATGTTGGTTACTGG 58.984 43.478 2.30 0.00 0.00 4.00
566 888 7.992180 TTTTCTCAGCTTGTCAAAGAATTTC 57.008 32.000 0.00 0.00 35.03 2.17
598 926 8.754991 TTTTAACTGACTTTCTATTGGTGGAA 57.245 30.769 0.00 0.00 0.00 3.53
637 969 6.083630 CCGATGTTGAAACAAAATCGTATGT 58.916 36.000 25.04 0.00 43.03 2.29
638 970 6.248420 CCGATGTTGAAACAAAATCGTATGTC 59.752 38.462 25.04 3.84 43.03 3.06
639 971 7.015289 CGATGTTGAAACAAAATCGTATGTCT 58.985 34.615 21.42 0.00 43.03 3.41
800 1138 4.460505 GCACCGTTGTACACTTTGTATTC 58.539 43.478 0.00 0.00 35.05 1.75
832 1170 0.909610 ACTCTCCCCCGATCTTTGCA 60.910 55.000 0.00 0.00 0.00 4.08
836 1174 0.623194 TCCCCCGATCTTTGCAATCA 59.377 50.000 0.00 0.00 0.00 2.57
1260 1647 1.005630 AGCAGCAGTTCAGGACGAC 60.006 57.895 0.00 0.00 0.00 4.34
1291 1678 1.228245 GTCAGGGCTTGAGGTTGCA 60.228 57.895 0.00 0.00 36.21 4.08
1509 1899 1.476845 TTCAGTACGCAGGGCCAGAA 61.477 55.000 6.18 0.00 0.00 3.02
1519 1909 2.125106 GGCCAGAACGGTAGCCAG 60.125 66.667 0.00 0.00 45.07 4.85
1520 1910 2.820037 GCCAGAACGGTAGCCAGC 60.820 66.667 0.00 0.00 36.97 4.85
1521 1911 2.662596 CCAGAACGGTAGCCAGCA 59.337 61.111 0.00 0.00 0.00 4.41
1522 1912 1.448540 CCAGAACGGTAGCCAGCAG 60.449 63.158 0.00 0.00 0.00 4.24
1710 2106 1.302366 GATGACAAGCGCATGGATCA 58.698 50.000 17.89 12.60 0.00 2.92
1843 2239 1.152881 GCTCAAGGCCCCGATTGAT 60.153 57.895 0.00 0.00 35.04 2.57
1900 2296 2.258591 GTGACGCTGCTCGAGGAA 59.741 61.111 15.58 0.00 41.67 3.36
1927 2323 0.389948 ACAAGATCCGGCTGAACGTC 60.390 55.000 0.00 0.00 0.00 4.34
2115 2514 2.428902 CGGGTACGTCGCACGAAA 60.429 61.111 14.18 1.38 46.05 3.46
2116 2515 2.709999 CGGGTACGTCGCACGAAAC 61.710 63.158 14.18 11.11 46.05 2.78
2117 2516 1.661197 GGGTACGTCGCACGAAACA 60.661 57.895 14.18 0.00 46.05 2.83
2118 2517 1.484232 GGTACGTCGCACGAAACAC 59.516 57.895 14.18 7.10 46.05 3.32
2119 2518 1.208009 GGTACGTCGCACGAAACACA 61.208 55.000 14.18 0.00 46.05 3.72
2130 2529 1.202758 ACGAAACACATTGCTCCTCCA 60.203 47.619 0.00 0.00 0.00 3.86
2131 2530 1.466167 CGAAACACATTGCTCCTCCAG 59.534 52.381 0.00 0.00 0.00 3.86
2132 2531 2.783135 GAAACACATTGCTCCTCCAGA 58.217 47.619 0.00 0.00 0.00 3.86
2133 2532 2.191128 AACACATTGCTCCTCCAGAC 57.809 50.000 0.00 0.00 0.00 3.51
2134 2533 1.356124 ACACATTGCTCCTCCAGACT 58.644 50.000 0.00 0.00 0.00 3.24
2136 2535 0.908198 ACATTGCTCCTCCAGACTCC 59.092 55.000 0.00 0.00 0.00 3.85
2137 2536 1.202330 CATTGCTCCTCCAGACTCCT 58.798 55.000 0.00 0.00 0.00 3.69
2138 2537 2.292521 ACATTGCTCCTCCAGACTCCTA 60.293 50.000 0.00 0.00 0.00 2.94
2139 2538 2.151502 TTGCTCCTCCAGACTCCTAG 57.848 55.000 0.00 0.00 0.00 3.02
2140 2539 0.396417 TGCTCCTCCAGACTCCTAGC 60.396 60.000 0.00 0.00 0.00 3.42
2141 2540 0.106217 GCTCCTCCAGACTCCTAGCT 60.106 60.000 0.00 0.00 0.00 3.32
2142 2541 1.691196 CTCCTCCAGACTCCTAGCTG 58.309 60.000 0.00 0.00 0.00 4.24
2150 2554 3.146066 CAGACTCCTAGCTGCCTACTAG 58.854 54.545 0.00 0.00 37.46 2.57
2246 2657 1.808390 CGTACCCTAACCTGTGCGC 60.808 63.158 0.00 0.00 34.08 6.09
2275 2686 0.591659 GGACCGCTTCCTGTTTGAAC 59.408 55.000 0.00 0.00 41.95 3.18
2348 2759 2.035193 CCATGAGATACGAGGACACCAG 59.965 54.545 0.00 0.00 0.00 4.00
2365 2776 4.192317 CACCAGGGTAAGCTCTTACATTC 58.808 47.826 18.23 9.34 45.32 2.67
2370 2781 4.721776 AGGGTAAGCTCTTACATTCCATGA 59.278 41.667 18.23 0.00 45.32 3.07
2385 2803 6.765036 ACATTCCATGAATACTGCTCAAGTAG 59.235 38.462 0.00 0.00 44.61 2.57
2393 2811 8.237811 TGAATACTGCTCAAGTAGACATATGA 57.762 34.615 10.38 0.00 44.61 2.15
2394 2812 8.695456 TGAATACTGCTCAAGTAGACATATGAA 58.305 33.333 10.38 0.00 44.61 2.57
2404 2822 2.279851 CATATGAACGCCGGCCGA 60.280 61.111 30.73 5.29 41.02 5.54
2443 2873 1.822581 TTGCTCGTCGTCGATGTATG 58.177 50.000 13.91 7.27 45.21 2.39
2444 2874 0.730840 TGCTCGTCGTCGATGTATGT 59.269 50.000 13.91 0.00 45.21 2.29
2447 2877 3.181508 TGCTCGTCGTCGATGTATGTTTA 60.182 43.478 13.91 0.00 45.21 2.01
2448 2878 3.973135 GCTCGTCGTCGATGTATGTTTAT 59.027 43.478 13.91 0.00 45.21 1.40
2449 2879 5.142265 GCTCGTCGTCGATGTATGTTTATA 58.858 41.667 13.91 0.00 45.21 0.98
2450 2880 5.793952 GCTCGTCGTCGATGTATGTTTATAT 59.206 40.000 13.91 0.00 45.21 0.86
2451 2881 6.957635 GCTCGTCGTCGATGTATGTTTATATA 59.042 38.462 13.91 0.00 45.21 0.86
2452 2882 7.162223 GCTCGTCGTCGATGTATGTTTATATAG 59.838 40.741 13.91 1.42 45.21 1.31
2453 2883 6.957635 TCGTCGTCGATGTATGTTTATATAGC 59.042 38.462 13.91 0.00 41.35 2.97
2454 2884 6.959871 CGTCGTCGATGTATGTTTATATAGCT 59.040 38.462 6.28 0.00 39.71 3.32
2455 2885 7.045547 CGTCGTCGATGTATGTTTATATAGCTG 60.046 40.741 6.28 0.00 39.71 4.24
2493 2923 4.471761 TGGCAACATGCTTGACGA 57.528 50.000 6.60 0.00 46.17 4.20
2494 2924 2.712984 TGGCAACATGCTTGACGAA 58.287 47.368 6.60 0.00 46.17 3.85
2509 2939 2.028839 TGACGAAATGGCCTACTCGAAA 60.029 45.455 22.19 10.45 35.34 3.46
2570 3000 3.827898 CCAGAGGCGACGAGTCCC 61.828 72.222 0.00 0.75 0.00 4.46
2649 3079 3.126528 CGTAGCCTACCTTCCCCG 58.873 66.667 0.00 0.00 0.00 5.73
2650 3080 2.496291 CGTAGCCTACCTTCCCCGG 61.496 68.421 0.00 0.00 0.00 5.73
2651 3081 1.075748 GTAGCCTACCTTCCCCGGA 60.076 63.158 0.73 0.00 0.00 5.14
2652 3082 0.688749 GTAGCCTACCTTCCCCGGAA 60.689 60.000 0.73 0.00 0.00 4.30
2719 3152 3.746940 TGATGATGGTCGATGAATGCAT 58.253 40.909 0.00 0.00 37.47 3.96
2720 3153 3.500680 TGATGATGGTCGATGAATGCATG 59.499 43.478 0.00 0.00 34.11 4.06
2721 3154 1.605232 TGATGGTCGATGAATGCATGC 59.395 47.619 11.82 11.82 34.11 4.06
2722 3155 0.589708 ATGGTCGATGAATGCATGCG 59.410 50.000 14.09 2.41 34.11 4.73
2723 3156 0.744057 TGGTCGATGAATGCATGCGT 60.744 50.000 14.09 10.53 34.11 5.24
2724 3157 1.217001 GGTCGATGAATGCATGCGTA 58.783 50.000 13.96 0.00 34.11 4.42
2725 3158 1.070577 GGTCGATGAATGCATGCGTAC 60.071 52.381 13.96 6.26 34.11 3.67
2726 3159 0.852136 TCGATGAATGCATGCGTACG 59.148 50.000 13.96 11.84 34.11 3.67
2727 3160 0.576798 CGATGAATGCATGCGTACGT 59.423 50.000 13.96 7.52 34.11 3.57
2728 3161 1.654501 CGATGAATGCATGCGTACGTG 60.655 52.381 13.96 9.35 34.11 4.49
2918 3351 1.399440 CGCTCAGTTCATGAACATGGG 59.601 52.381 33.92 27.77 43.47 4.00
3031 3464 2.389715 GCACCTAGCTCCCTCTTTCTA 58.610 52.381 0.00 0.00 41.15 2.10
3069 3502 0.979709 ATGCCTGGCTAGCTCTGACA 60.980 55.000 21.03 7.96 0.00 3.58
3070 3503 1.153469 GCCTGGCTAGCTCTGACAC 60.153 63.158 15.72 0.00 0.00 3.67
3093 3530 1.068083 CGATGGCGTGCAGAGGTAT 59.932 57.895 0.00 0.00 0.00 2.73
3196 3633 1.668101 GAGGGTCGTCGGCAAGATCT 61.668 60.000 0.00 0.00 0.00 2.75
3239 3676 1.210413 CCTCGTATCGCTGATCCCG 59.790 63.158 0.00 0.00 0.00 5.14
3279 3716 2.013807 CTGCTGCGCGCCTTAATTA 58.986 52.632 30.77 6.77 38.05 1.40
3295 3732 7.027161 GCCTTAATTATGTTGTTGTCGACATT 58.973 34.615 20.80 9.68 43.76 2.71
3296 3733 7.540745 GCCTTAATTATGTTGTTGTCGACATTT 59.459 33.333 20.80 3.59 43.76 2.32
3299 3736 2.098215 TGTTGTTGTCGACATTTGCG 57.902 45.000 20.80 0.00 38.26 4.85
3302 3739 0.316607 TGTTGTCGACATTTGCGCAC 60.317 50.000 20.80 13.01 32.00 5.34
3303 3740 0.316607 GTTGTCGACATTTGCGCACA 60.317 50.000 20.80 3.02 0.00 4.57
3306 3743 1.801178 TGTCGACATTTGCGCACAATA 59.199 42.857 15.76 0.00 35.21 1.90
3309 3746 2.675348 TCGACATTTGCGCACAATATGA 59.325 40.909 11.12 1.33 35.21 2.15
3310 3747 3.126000 TCGACATTTGCGCACAATATGAA 59.874 39.130 11.12 0.00 35.21 2.57
3318 3755 3.181498 TGCGCACAATATGAATGTTCCTG 60.181 43.478 5.66 0.00 0.00 3.86
3368 3805 0.657840 GAGCTTTGCGTCTGTGTGTT 59.342 50.000 0.00 0.00 0.00 3.32
3374 3811 1.570813 TGCGTCTGTGTGTTTCTCTG 58.429 50.000 0.00 0.00 0.00 3.35
3375 3812 1.134818 TGCGTCTGTGTGTTTCTCTGT 60.135 47.619 0.00 0.00 0.00 3.41
3376 3813 1.523095 GCGTCTGTGTGTTTCTCTGTC 59.477 52.381 0.00 0.00 0.00 3.51
3380 3817 3.553511 GTCTGTGTGTTTCTCTGTCTGTG 59.446 47.826 0.00 0.00 0.00 3.66
3395 3832 3.129813 TGTCTGTGTCTGTCGTTGTAGTT 59.870 43.478 0.00 0.00 0.00 2.24
3396 3833 4.110482 GTCTGTGTCTGTCGTTGTAGTTT 58.890 43.478 0.00 0.00 0.00 2.66
3417 3854 0.517316 GGAAGCGATGTGTGTGTTCC 59.483 55.000 0.00 0.00 0.00 3.62
3438 3875 7.170320 TGTTCCGTAGTTTGTTTCTCTATTGTC 59.830 37.037 0.00 0.00 0.00 3.18
3489 3928 4.929211 CGCTAAATATGTACTATGGCAGCA 59.071 41.667 0.00 0.00 0.00 4.41
3521 3960 7.484975 TGTTTTGTGTCCAGGTTTAAATACTG 58.515 34.615 13.13 13.13 0.00 2.74
3536 3975 3.895232 ATACTGTGAGGTACTTGGCTG 57.105 47.619 0.00 0.00 41.55 4.85
3543 3982 4.227300 TGTGAGGTACTTGGCTGGATAAAT 59.773 41.667 0.00 0.00 41.55 1.40
3549 3988 4.235079 ACTTGGCTGGATAAATACTGCA 57.765 40.909 6.41 0.00 37.31 4.41
3569 4249 4.337836 TGCAGTTTTATGAACAGAGTTGCA 59.662 37.500 0.00 0.00 35.70 4.08
3585 4265 6.364165 CAGAGTTGCAATTTTATGGTCAACAG 59.636 38.462 0.59 0.00 37.02 3.16
3586 4266 4.990426 AGTTGCAATTTTATGGTCAACAGC 59.010 37.500 0.59 0.00 37.02 4.40
3587 4267 4.597404 TGCAATTTTATGGTCAACAGCA 57.403 36.364 0.00 0.00 0.00 4.41
3588 4268 5.149973 TGCAATTTTATGGTCAACAGCAT 57.850 34.783 0.00 0.00 43.37 3.79
3589 4269 5.549347 TGCAATTTTATGGTCAACAGCATT 58.451 33.333 0.00 0.00 41.18 3.56
3627 4309 7.725818 TTGAATTTTTGCATGCTTGATTGTA 57.274 28.000 20.33 0.00 0.00 2.41
3629 4311 6.704937 TGAATTTTTGCATGCTTGATTGTACA 59.295 30.769 20.33 6.36 0.00 2.90
3638 4320 5.324784 TGCTTGATTGTACACTACGATCT 57.675 39.130 0.00 0.00 45.67 2.75
3639 4321 5.102313 TGCTTGATTGTACACTACGATCTG 58.898 41.667 0.00 0.00 45.67 2.90
3640 4322 5.103000 GCTTGATTGTACACTACGATCTGT 58.897 41.667 0.00 0.00 45.67 3.41
3695 4377 0.766131 TTTGGGCCGGTCTTTCTGTA 59.234 50.000 5.77 0.00 0.00 2.74
3776 7251 1.757699 TGTTTGGTTTGTTAGGGGTGC 59.242 47.619 0.00 0.00 0.00 5.01
3779 7254 0.825840 TGGTTTGTTAGGGGTGCTGC 60.826 55.000 0.00 0.00 0.00 5.25
3780 7255 0.825840 GGTTTGTTAGGGGTGCTGCA 60.826 55.000 0.00 0.00 0.00 4.41
3781 7256 1.036707 GTTTGTTAGGGGTGCTGCAA 58.963 50.000 2.77 0.00 0.00 4.08
3782 7257 1.000274 GTTTGTTAGGGGTGCTGCAAG 60.000 52.381 2.77 0.00 0.00 4.01
3783 7258 0.184933 TTGTTAGGGGTGCTGCAAGT 59.815 50.000 2.77 0.00 35.30 3.16
3784 7259 0.537143 TGTTAGGGGTGCTGCAAGTG 60.537 55.000 2.77 0.00 35.30 3.16
3834 7332 6.655003 TGTCCAGATTTCAATAGTTTGAGGTC 59.345 38.462 0.00 0.00 42.60 3.85
3840 7338 9.793259 AGATTTCAATAGTTTGAGGTCTTTGTA 57.207 29.630 0.00 0.00 42.60 2.41
3919 7417 3.911868 TCTTCATTCAATTTTGTGGCCG 58.088 40.909 0.00 0.00 0.00 6.13
3920 7418 3.571828 TCTTCATTCAATTTTGTGGCCGA 59.428 39.130 0.00 0.00 0.00 5.54
3921 7419 4.220382 TCTTCATTCAATTTTGTGGCCGAT 59.780 37.500 0.00 0.00 0.00 4.18
3922 7420 4.108699 TCATTCAATTTTGTGGCCGATC 57.891 40.909 0.00 0.00 0.00 3.69
3923 7421 2.627863 TTCAATTTTGTGGCCGATCG 57.372 45.000 8.51 8.51 0.00 3.69
3964 7463 1.133356 ACTTCAGCAGGAGGCCTTTTT 60.133 47.619 6.77 0.00 46.50 1.94
4015 7519 3.003897 GGGCACTCGTTTTTCATGTTGTA 59.996 43.478 0.00 0.00 0.00 2.41
4016 7520 4.219033 GGCACTCGTTTTTCATGTTGTAG 58.781 43.478 0.00 0.00 0.00 2.74
4019 7523 5.395486 GCACTCGTTTTTCATGTTGTAGTTC 59.605 40.000 0.00 0.00 0.00 3.01
4023 7527 8.241367 ACTCGTTTTTCATGTTGTAGTTCTTTT 58.759 29.630 0.00 0.00 0.00 2.27
4110 7615 6.241207 TGCTAGCTCTGTATTTTTGTTGTC 57.759 37.500 17.23 0.00 0.00 3.18
4111 7616 5.762711 TGCTAGCTCTGTATTTTTGTTGTCA 59.237 36.000 17.23 0.00 0.00 3.58
4112 7617 6.073058 TGCTAGCTCTGTATTTTTGTTGTCAG 60.073 38.462 17.23 0.00 0.00 3.51
4113 7618 6.147821 GCTAGCTCTGTATTTTTGTTGTCAGA 59.852 38.462 7.70 0.00 0.00 3.27
4114 7619 6.942532 AGCTCTGTATTTTTGTTGTCAGAA 57.057 33.333 0.00 0.00 32.76 3.02
4115 7620 7.516198 AGCTCTGTATTTTTGTTGTCAGAAT 57.484 32.000 0.00 0.00 32.76 2.40
4116 7621 7.945134 AGCTCTGTATTTTTGTTGTCAGAATT 58.055 30.769 0.00 0.00 32.76 2.17
4117 7622 8.416329 AGCTCTGTATTTTTGTTGTCAGAATTT 58.584 29.630 0.00 0.00 32.76 1.82
4118 7623 9.677567 GCTCTGTATTTTTGTTGTCAGAATTTA 57.322 29.630 0.00 0.00 32.76 1.40
4218 7723 8.483307 ACTATTGAAATGATTTCCATGTTTGC 57.517 30.769 14.73 0.00 38.90 3.68
4219 7724 6.746745 ATTGAAATGATTTCCATGTTTGCC 57.253 33.333 14.73 0.00 38.90 4.52
4220 7725 5.224821 TGAAATGATTTCCATGTTTGCCA 57.775 34.783 14.73 0.00 38.90 4.92
4221 7726 5.239351 TGAAATGATTTCCATGTTTGCCAG 58.761 37.500 14.73 0.00 38.90 4.85
4222 7727 3.899052 ATGATTTCCATGTTTGCCAGG 57.101 42.857 0.00 0.00 33.39 4.45
4223 7728 2.607499 TGATTTCCATGTTTGCCAGGT 58.393 42.857 0.00 0.00 0.00 4.00
4224 7729 3.772387 TGATTTCCATGTTTGCCAGGTA 58.228 40.909 0.00 0.00 0.00 3.08
4225 7730 4.352009 TGATTTCCATGTTTGCCAGGTAT 58.648 39.130 0.00 0.00 0.00 2.73
4226 7731 4.776837 TGATTTCCATGTTTGCCAGGTATT 59.223 37.500 0.00 0.00 0.00 1.89
4227 7732 5.248020 TGATTTCCATGTTTGCCAGGTATTT 59.752 36.000 0.00 0.00 0.00 1.40
4228 7733 5.559148 TTTCCATGTTTGCCAGGTATTTT 57.441 34.783 0.00 0.00 0.00 1.82
4229 7734 5.559148 TTCCATGTTTGCCAGGTATTTTT 57.441 34.783 0.00 0.00 0.00 1.94
4257 7762 9.445973 AAGATCCATTCTTCTCCTAGAATTAGT 57.554 33.333 0.00 0.00 40.86 2.24
4306 7811 9.614792 AGTTTCTACAGTTACAAAGAACTTGAT 57.385 29.630 0.00 0.00 37.57 2.57
4344 7849 5.133221 AGTTGAGGTAATATCACCAATGGC 58.867 41.667 0.00 0.00 41.40 4.40
4345 7850 3.738982 TGAGGTAATATCACCAATGGCG 58.261 45.455 0.00 0.00 41.40 5.69
4346 7851 2.484264 GAGGTAATATCACCAATGGCGC 59.516 50.000 0.00 0.00 41.40 6.53
4347 7852 1.539827 GGTAATATCACCAATGGCGCC 59.460 52.381 22.73 22.73 38.55 6.53
4348 7853 2.504367 GTAATATCACCAATGGCGCCT 58.496 47.619 29.70 10.60 0.00 5.52
4349 7854 2.949177 AATATCACCAATGGCGCCTA 57.051 45.000 29.70 14.84 0.00 3.93
4350 7855 2.949177 ATATCACCAATGGCGCCTAA 57.051 45.000 29.70 8.87 0.00 2.69
4351 7856 2.719531 TATCACCAATGGCGCCTAAA 57.280 45.000 29.70 7.94 0.00 1.85
4352 7857 1.102978 ATCACCAATGGCGCCTAAAC 58.897 50.000 29.70 0.00 0.00 2.01
4353 7858 0.037590 TCACCAATGGCGCCTAAACT 59.962 50.000 29.70 4.13 0.00 2.66
4354 7859 0.887933 CACCAATGGCGCCTAAACTT 59.112 50.000 29.70 10.29 0.00 2.66
4355 7860 0.887933 ACCAATGGCGCCTAAACTTG 59.112 50.000 29.70 20.44 0.00 3.16
4356 7861 1.173043 CCAATGGCGCCTAAACTTGA 58.827 50.000 29.70 4.25 0.00 3.02
4357 7862 1.543802 CCAATGGCGCCTAAACTTGAA 59.456 47.619 29.70 3.35 0.00 2.69
4358 7863 2.029470 CCAATGGCGCCTAAACTTGAAA 60.029 45.455 29.70 2.45 0.00 2.69
4359 7864 3.553922 CCAATGGCGCCTAAACTTGAAAA 60.554 43.478 29.70 1.81 0.00 2.29
4360 7865 4.054671 CAATGGCGCCTAAACTTGAAAAA 58.945 39.130 29.70 1.56 0.00 1.94
4361 7866 4.535526 ATGGCGCCTAAACTTGAAAAAT 57.464 36.364 29.70 4.39 0.00 1.82
4362 7867 5.652994 ATGGCGCCTAAACTTGAAAAATA 57.347 34.783 29.70 0.22 0.00 1.40
4363 7868 4.800784 TGGCGCCTAAACTTGAAAAATAC 58.199 39.130 29.70 0.00 0.00 1.89
4364 7869 4.278669 TGGCGCCTAAACTTGAAAAATACA 59.721 37.500 29.70 0.00 0.00 2.29
4365 7870 4.619760 GGCGCCTAAACTTGAAAAATACAC 59.380 41.667 22.15 0.00 0.00 2.90
4366 7871 4.619760 GCGCCTAAACTTGAAAAATACACC 59.380 41.667 0.00 0.00 0.00 4.16
4367 7872 4.849383 CGCCTAAACTTGAAAAATACACCG 59.151 41.667 0.00 0.00 0.00 4.94
4368 7873 5.334260 CGCCTAAACTTGAAAAATACACCGA 60.334 40.000 0.00 0.00 0.00 4.69
4369 7874 6.440436 GCCTAAACTTGAAAAATACACCGAA 58.560 36.000 0.00 0.00 0.00 4.30
4370 7875 7.088272 GCCTAAACTTGAAAAATACACCGAAT 58.912 34.615 0.00 0.00 0.00 3.34
4371 7876 7.597369 GCCTAAACTTGAAAAATACACCGAATT 59.403 33.333 0.00 0.00 0.00 2.17
4372 7877 8.911662 CCTAAACTTGAAAAATACACCGAATTG 58.088 33.333 0.00 0.00 0.00 2.32
4373 7878 7.707774 AAACTTGAAAAATACACCGAATTGG 57.292 32.000 0.00 0.00 46.41 3.16
4387 7892 4.672409 CCGAATTGGTTCTAGAATTTGGC 58.328 43.478 8.75 0.00 36.66 4.52
4388 7893 4.157656 CCGAATTGGTTCTAGAATTTGGCA 59.842 41.667 8.75 0.00 36.66 4.92
4389 7894 5.095490 CGAATTGGTTCTAGAATTTGGCAC 58.905 41.667 8.75 0.00 32.00 5.01
4390 7895 5.335583 CGAATTGGTTCTAGAATTTGGCACA 60.336 40.000 8.75 0.00 32.00 4.57
4391 7896 6.789822 CGAATTGGTTCTAGAATTTGGCACAA 60.790 38.462 8.75 6.43 36.29 3.33
4392 7897 8.517576 CGAATTGGTTCTAGAATTTGGCACAAG 61.518 40.741 8.75 0.00 36.29 3.16
4405 7910 3.000164 CACAAGCGTGCAAATACGG 58.000 52.632 0.00 0.00 43.87 4.02
4412 7917 3.602390 GCGTGCAAATACGGTGATAAT 57.398 42.857 0.00 0.00 43.87 1.28
4413 7918 3.541711 GCGTGCAAATACGGTGATAATC 58.458 45.455 0.00 0.00 43.87 1.75
4414 7919 3.247648 GCGTGCAAATACGGTGATAATCT 59.752 43.478 0.00 0.00 43.87 2.40
4415 7920 4.608445 GCGTGCAAATACGGTGATAATCTC 60.608 45.833 0.00 0.00 43.87 2.75
4416 7921 4.506288 CGTGCAAATACGGTGATAATCTCA 59.494 41.667 0.00 0.00 40.22 3.27
4417 7922 5.177511 CGTGCAAATACGGTGATAATCTCAT 59.822 40.000 0.00 0.00 40.22 2.90
4418 7923 6.593978 GTGCAAATACGGTGATAATCTCATC 58.406 40.000 0.00 0.00 35.97 2.92
4419 7924 5.700832 TGCAAATACGGTGATAATCTCATCC 59.299 40.000 0.00 0.00 35.97 3.51
4420 7925 5.700832 GCAAATACGGTGATAATCTCATCCA 59.299 40.000 0.00 0.00 35.97 3.41
4421 7926 6.347725 GCAAATACGGTGATAATCTCATCCAC 60.348 42.308 0.00 0.00 35.97 4.02
4422 7927 3.753294 ACGGTGATAATCTCATCCACC 57.247 47.619 0.00 0.00 35.97 4.61
4423 7928 3.038280 ACGGTGATAATCTCATCCACCA 58.962 45.455 0.00 0.00 35.97 4.17
4424 7929 3.070159 ACGGTGATAATCTCATCCACCAG 59.930 47.826 0.00 0.00 35.97 4.00
4425 7930 3.321968 CGGTGATAATCTCATCCACCAGA 59.678 47.826 0.00 0.00 35.97 3.86
4426 7931 4.636249 GGTGATAATCTCATCCACCAGAC 58.364 47.826 0.00 0.00 35.97 3.51
4427 7932 4.302455 GTGATAATCTCATCCACCAGACG 58.698 47.826 0.00 0.00 35.97 4.18
4428 7933 3.960755 TGATAATCTCATCCACCAGACGT 59.039 43.478 0.00 0.00 0.00 4.34
4429 7934 5.009710 GTGATAATCTCATCCACCAGACGTA 59.990 44.000 0.00 0.00 35.97 3.57
4430 7935 5.775195 TGATAATCTCATCCACCAGACGTAT 59.225 40.000 0.00 0.00 0.00 3.06
4431 7936 6.946009 TGATAATCTCATCCACCAGACGTATA 59.054 38.462 0.00 0.00 0.00 1.47
4432 7937 5.713792 AATCTCATCCACCAGACGTATAG 57.286 43.478 0.00 0.00 0.00 1.31
4433 7938 4.166246 TCTCATCCACCAGACGTATAGT 57.834 45.455 0.00 0.00 0.00 2.12
4434 7939 3.883489 TCTCATCCACCAGACGTATAGTG 59.117 47.826 1.54 1.54 0.00 2.74
4435 7940 2.361119 TCATCCACCAGACGTATAGTGC 59.639 50.000 3.07 0.00 0.00 4.40
4436 7941 0.736636 TCCACCAGACGTATAGTGCG 59.263 55.000 3.07 0.00 0.00 5.34
4437 7942 0.870307 CCACCAGACGTATAGTGCGC 60.870 60.000 0.00 0.00 0.00 6.09
4438 7943 0.100682 CACCAGACGTATAGTGCGCT 59.899 55.000 9.73 4.58 0.00 5.92
4439 7944 0.100682 ACCAGACGTATAGTGCGCTG 59.899 55.000 10.80 0.00 35.19 5.18
4440 7945 0.380733 CCAGACGTATAGTGCGCTGA 59.619 55.000 10.80 0.00 36.42 4.26
4441 7946 1.001268 CCAGACGTATAGTGCGCTGAT 60.001 52.381 10.80 1.34 36.42 2.90
4442 7947 2.047040 CAGACGTATAGTGCGCTGATG 58.953 52.381 10.80 5.87 36.42 3.07
4443 7948 1.676529 AGACGTATAGTGCGCTGATGT 59.323 47.619 10.80 9.24 0.00 3.06
4444 7949 1.781429 GACGTATAGTGCGCTGATGTG 59.219 52.381 10.80 0.00 0.00 3.21
4445 7950 1.131771 CGTATAGTGCGCTGATGTGG 58.868 55.000 10.80 0.00 0.00 4.17
4446 7951 0.861837 GTATAGTGCGCTGATGTGGC 59.138 55.000 10.80 0.00 0.00 5.01
4452 7957 2.588596 CGCTGATGTGGCGCCATA 60.589 61.111 35.23 31.92 45.83 2.74
4453 7958 1.962822 CGCTGATGTGGCGCCATAT 60.963 57.895 35.39 35.39 45.83 1.78
4454 7959 1.509644 CGCTGATGTGGCGCCATATT 61.510 55.000 35.17 22.20 45.83 1.28
4455 7960 0.670162 GCTGATGTGGCGCCATATTT 59.330 50.000 35.17 19.14 0.00 1.40
4456 7961 1.067516 GCTGATGTGGCGCCATATTTT 59.932 47.619 35.17 18.38 0.00 1.82
4457 7962 2.481795 GCTGATGTGGCGCCATATTTTT 60.482 45.455 35.17 18.00 0.00 1.94
4458 7963 3.243367 GCTGATGTGGCGCCATATTTTTA 60.243 43.478 35.17 21.54 0.00 1.52
4459 7964 4.559300 GCTGATGTGGCGCCATATTTTTAT 60.559 41.667 35.17 16.85 0.00 1.40
4460 7965 5.119931 TGATGTGGCGCCATATTTTTATC 57.880 39.130 35.17 23.90 0.00 1.75
4461 7966 3.617540 TGTGGCGCCATATTTTTATCG 57.382 42.857 35.23 0.00 0.00 2.92
4462 7967 2.292016 TGTGGCGCCATATTTTTATCGG 59.708 45.455 35.23 0.00 0.00 4.18
4463 7968 1.268352 TGGCGCCATATTTTTATCGGC 59.732 47.619 29.03 0.00 41.76 5.54
4464 7969 1.268352 GGCGCCATATTTTTATCGGCA 59.732 47.619 24.80 0.00 43.13 5.69
4465 7970 2.094752 GGCGCCATATTTTTATCGGCAT 60.095 45.455 24.80 0.00 43.13 4.40
4466 7971 2.916716 GCGCCATATTTTTATCGGCATG 59.083 45.455 0.00 0.00 43.13 4.06
4467 7972 2.916716 CGCCATATTTTTATCGGCATGC 59.083 45.455 9.90 9.90 43.13 4.06
4468 7973 3.611293 CGCCATATTTTTATCGGCATGCA 60.611 43.478 21.36 0.00 43.13 3.96
4469 7974 3.674753 GCCATATTTTTATCGGCATGCAC 59.325 43.478 21.36 8.08 42.50 4.57
4470 7975 4.795635 GCCATATTTTTATCGGCATGCACA 60.796 41.667 21.36 4.98 42.50 4.57
4471 7976 4.681025 CCATATTTTTATCGGCATGCACAC 59.319 41.667 21.36 0.51 0.00 3.82
4472 7977 2.254918 TTTTTATCGGCATGCACACG 57.745 45.000 21.36 14.24 0.00 4.49
4473 7978 1.160989 TTTTATCGGCATGCACACGT 58.839 45.000 21.36 7.45 0.00 4.49
4474 7979 0.445829 TTTATCGGCATGCACACGTG 59.554 50.000 21.36 15.48 35.78 4.49
4475 7980 1.365368 TTATCGGCATGCACACGTGG 61.365 55.000 21.36 10.05 33.09 4.94
4482 7987 2.425161 TGCACACGTGGCATGAGA 59.575 55.556 22.47 5.12 36.11 3.27
4483 7988 1.960763 TGCACACGTGGCATGAGAC 60.961 57.895 22.47 4.50 36.11 3.36
4484 7989 2.680913 GCACACGTGGCATGAGACC 61.681 63.158 21.57 0.00 0.00 3.85
4485 7990 2.034879 CACACGTGGCATGAGACCC 61.035 63.158 21.57 0.00 0.00 4.46
4486 7991 2.347114 CACGTGGCATGAGACCCA 59.653 61.111 14.82 0.00 0.00 4.51
4487 7992 2.034879 CACGTGGCATGAGACCCAC 61.035 63.158 14.82 9.50 46.25 4.61
4491 7996 2.717639 GTGGCATGAGACCCACTTAT 57.282 50.000 11.69 0.00 46.23 1.73
4492 7997 3.838244 GTGGCATGAGACCCACTTATA 57.162 47.619 11.69 0.00 46.23 0.98
4493 7998 4.150897 GTGGCATGAGACCCACTTATAA 57.849 45.455 11.69 0.00 46.23 0.98
4494 7999 3.877508 GTGGCATGAGACCCACTTATAAC 59.122 47.826 11.69 0.00 46.23 1.89
4495 8000 3.521531 TGGCATGAGACCCACTTATAACA 59.478 43.478 0.00 0.00 0.00 2.41
4496 8001 3.877508 GGCATGAGACCCACTTATAACAC 59.122 47.826 0.00 0.00 0.00 3.32
4497 8002 4.513442 GCATGAGACCCACTTATAACACA 58.487 43.478 0.00 0.00 0.00 3.72
4498 8003 5.126067 GCATGAGACCCACTTATAACACAT 58.874 41.667 0.00 0.00 0.00 3.21
4499 8004 5.008019 GCATGAGACCCACTTATAACACATG 59.992 44.000 0.00 0.00 35.85 3.21
4500 8005 4.513442 TGAGACCCACTTATAACACATGC 58.487 43.478 0.00 0.00 0.00 4.06
4501 8006 4.225042 TGAGACCCACTTATAACACATGCT 59.775 41.667 0.00 0.00 0.00 3.79
4502 8007 5.179452 AGACCCACTTATAACACATGCTT 57.821 39.130 0.00 0.00 0.00 3.91
4503 8008 5.570320 AGACCCACTTATAACACATGCTTT 58.430 37.500 0.00 0.00 0.00 3.51
4504 8009 6.717289 AGACCCACTTATAACACATGCTTTA 58.283 36.000 0.00 0.00 0.00 1.85
4505 8010 7.346471 AGACCCACTTATAACACATGCTTTAT 58.654 34.615 0.00 0.00 0.00 1.40
4506 8011 7.834181 AGACCCACTTATAACACATGCTTTATT 59.166 33.333 5.07 0.00 0.00 1.40
4507 8012 8.361169 ACCCACTTATAACACATGCTTTATTT 57.639 30.769 5.07 0.00 0.00 1.40
4508 8013 9.469097 ACCCACTTATAACACATGCTTTATTTA 57.531 29.630 5.07 0.00 0.00 1.40
4532 8037 5.833406 ATGTATCTCTCTATGATCAGCGG 57.167 43.478 0.09 0.00 0.00 5.52
4533 8038 4.013050 TGTATCTCTCTATGATCAGCGGG 58.987 47.826 0.09 0.00 0.00 6.13
4534 8039 1.252175 TCTCTCTATGATCAGCGGGC 58.748 55.000 0.09 0.00 0.00 6.13
4535 8040 0.246086 CTCTCTATGATCAGCGGGCC 59.754 60.000 0.09 0.00 0.00 5.80
4536 8041 1.188219 TCTCTATGATCAGCGGGCCC 61.188 60.000 13.57 13.57 0.00 5.80
4537 8042 1.459348 TCTATGATCAGCGGGCCCA 60.459 57.895 24.92 1.02 0.00 5.36
4538 8043 0.837691 TCTATGATCAGCGGGCCCAT 60.838 55.000 24.92 7.45 0.00 4.00
4539 8044 0.904649 CTATGATCAGCGGGCCCATA 59.095 55.000 24.92 9.11 0.00 2.74
4540 8045 1.487976 CTATGATCAGCGGGCCCATAT 59.512 52.381 24.92 8.86 0.00 1.78
4541 8046 0.034767 ATGATCAGCGGGCCCATATG 60.035 55.000 24.92 16.97 0.00 1.78
4542 8047 1.376466 GATCAGCGGGCCCATATGT 59.624 57.895 24.92 3.75 0.00 2.29
4543 8048 0.674895 GATCAGCGGGCCCATATGTC 60.675 60.000 24.92 10.21 0.00 3.06
4544 8049 1.418097 ATCAGCGGGCCCATATGTCA 61.418 55.000 24.92 2.06 0.00 3.58
4545 8050 1.598962 CAGCGGGCCCATATGTCAG 60.599 63.158 24.92 3.18 0.00 3.51
4546 8051 2.980233 GCGGGCCCATATGTCAGC 60.980 66.667 24.92 10.79 0.00 4.26
4547 8052 2.281761 CGGGCCCATATGTCAGCC 60.282 66.667 24.92 16.51 44.99 4.85
4548 8053 2.281761 GGGCCCATATGTCAGCCG 60.282 66.667 19.95 0.00 46.75 5.52
4549 8054 2.818169 GGGCCCATATGTCAGCCGA 61.818 63.158 19.95 0.00 46.75 5.54
4550 8055 1.302033 GGCCCATATGTCAGCCGAG 60.302 63.158 11.56 0.00 35.30 4.63
4551 8056 1.748403 GCCCATATGTCAGCCGAGA 59.252 57.895 1.24 0.00 0.00 4.04
4552 8057 0.320247 GCCCATATGTCAGCCGAGAG 60.320 60.000 1.24 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.944386 ACCGCCATTAATCACGCATC 59.056 50.000 1.88 0.00 0.00 3.91
41 42 1.995991 CAAGACGCATCGTAACCCG 59.004 57.895 0.00 0.00 41.37 5.28
67 68 1.742768 GATGGCTCCTCTACCACCG 59.257 63.158 0.00 0.00 39.19 4.94
84 85 0.937699 CACTTCTTCCGCGACAACGA 60.938 55.000 8.23 0.00 42.66 3.85
91 92 1.560923 CTATGTCCACTTCTTCCGCG 58.439 55.000 0.00 0.00 0.00 6.46
139 420 2.639839 AGATCCATACCCCTATGTGCAC 59.360 50.000 10.75 10.75 0.00 4.57
153 434 2.278857 GTGTCGCGCGAGATCCAT 60.279 61.111 35.75 0.00 0.00 3.41
192 473 1.175983 GCGAGATCCATCCTCCGACT 61.176 60.000 0.00 0.00 0.00 4.18
196 477 2.048690 GCGCGAGATCCATCCTCC 60.049 66.667 12.10 0.00 0.00 4.30
211 492 1.325647 CGAGATCTCATCATGTCGCG 58.674 55.000 22.31 0.00 33.37 5.87
232 513 1.214992 ATCCAACCCCCTTCCCAGAC 61.215 60.000 0.00 0.00 0.00 3.51
235 516 0.919289 GAGATCCAACCCCCTTCCCA 60.919 60.000 0.00 0.00 0.00 4.37
239 520 2.998949 GCGAGATCCAACCCCCTT 59.001 61.111 0.00 0.00 0.00 3.95
241 522 3.782443 ACGCGAGATCCAACCCCC 61.782 66.667 15.93 0.00 0.00 5.40
246 527 1.815003 CATGCCACGCGAGATCCAA 60.815 57.895 15.93 0.00 0.00 3.53
260 541 2.812591 CCTGCATAAGGTCTCATCATGC 59.187 50.000 0.00 0.00 41.74 4.06
263 544 1.141657 GCCCTGCATAAGGTCTCATCA 59.858 52.381 0.00 0.00 45.78 3.07
295 576 1.528076 GACCACACCATGCCACACA 60.528 57.895 0.00 0.00 0.00 3.72
418 699 1.658994 TCGGGGCAAACATCGATTAC 58.341 50.000 0.00 0.00 0.00 1.89
421 702 1.366111 CGTTCGGGGCAAACATCGAT 61.366 55.000 0.00 0.00 0.00 3.59
425 706 3.370231 GGCGTTCGGGGCAAACAT 61.370 61.111 0.00 0.00 0.00 2.71
470 752 8.862550 ATATATGCAAAAGCTTTTTAGACTGC 57.137 30.769 21.70 20.48 0.00 4.40
519 802 2.289565 CCGAGAGCCATTTTTACCCTC 58.710 52.381 0.00 0.00 0.00 4.30
613 941 6.083630 ACATACGATTTTGTTTCAACATCGG 58.916 36.000 24.32 14.76 40.99 4.18
614 942 7.006476 CAGACATACGATTTTGTTTCAACATCG 59.994 37.037 21.24 21.24 41.86 3.84
615 943 7.201266 GCAGACATACGATTTTGTTTCAACATC 60.201 37.037 0.00 0.00 38.95 3.06
616 944 6.582295 GCAGACATACGATTTTGTTTCAACAT 59.418 34.615 0.00 0.00 38.95 2.71
617 945 5.912396 GCAGACATACGATTTTGTTTCAACA 59.088 36.000 0.00 0.00 37.08 3.33
618 946 6.142817 AGCAGACATACGATTTTGTTTCAAC 58.857 36.000 0.00 0.00 0.00 3.18
637 969 2.038863 TTTCCCCTCCTACAAGCAGA 57.961 50.000 0.00 0.00 0.00 4.26
638 970 2.820197 GTTTTTCCCCTCCTACAAGCAG 59.180 50.000 0.00 0.00 0.00 4.24
639 971 2.445525 AGTTTTTCCCCTCCTACAAGCA 59.554 45.455 0.00 0.00 0.00 3.91
782 1114 5.579384 TTCCGAATACAAAGTGTACAACG 57.421 39.130 0.00 0.00 35.42 4.10
800 1138 1.446272 GAGAGTCCCGTGCTTTCCG 60.446 63.158 0.00 0.00 0.00 4.30
832 1170 2.143008 TGTAACAGACGCGTGTGATT 57.857 45.000 38.69 28.49 0.00 2.57
836 1174 2.406024 CGTATTTGTAACAGACGCGTGT 59.594 45.455 20.70 11.10 0.00 4.49
1372 1759 2.025727 CCCATCGGCGAGACGTAC 59.974 66.667 17.22 0.00 34.94 3.67
1402 1792 1.522806 CGCGCTAGGGTTATTGGCA 60.523 57.895 5.56 0.00 0.00 4.92
1509 1899 4.767255 GCTGCTGCTGGCTACCGT 62.767 66.667 8.53 0.00 42.39 4.83
1520 1910 1.670083 TGTACTGCTGCTGCTGCTG 60.670 57.895 27.75 27.75 41.07 4.41
1521 1911 1.670406 GTGTACTGCTGCTGCTGCT 60.670 57.895 27.67 14.24 41.07 4.24
1522 1912 1.633852 GAGTGTACTGCTGCTGCTGC 61.634 60.000 22.51 22.51 41.07 5.25
1645 2041 3.508840 GCGCCGGATTGGTTGGAG 61.509 66.667 5.05 0.00 41.21 3.86
1900 2296 2.490217 CGGATCTTGTCGACGCCT 59.510 61.111 11.62 0.00 0.00 5.52
2036 2432 4.778143 GGCGGCCTCCACGATGTT 62.778 66.667 12.87 0.00 0.00 2.71
2111 2510 1.466167 CTGGAGGAGCAATGTGTTTCG 59.534 52.381 0.00 0.00 0.00 3.46
2112 2511 2.485814 GTCTGGAGGAGCAATGTGTTTC 59.514 50.000 0.00 0.00 0.00 2.78
2113 2512 2.107204 AGTCTGGAGGAGCAATGTGTTT 59.893 45.455 0.00 0.00 0.00 2.83
2114 2513 1.701847 AGTCTGGAGGAGCAATGTGTT 59.298 47.619 0.00 0.00 0.00 3.32
2115 2514 1.277557 GAGTCTGGAGGAGCAATGTGT 59.722 52.381 0.00 0.00 0.00 3.72
2116 2515 1.406614 GGAGTCTGGAGGAGCAATGTG 60.407 57.143 0.00 0.00 0.00 3.21
2117 2516 0.908198 GGAGTCTGGAGGAGCAATGT 59.092 55.000 0.00 0.00 0.00 2.71
2118 2517 1.202330 AGGAGTCTGGAGGAGCAATG 58.798 55.000 0.00 0.00 0.00 2.82
2119 2518 2.676748 CTAGGAGTCTGGAGGAGCAAT 58.323 52.381 0.00 0.00 0.00 3.56
2130 2529 2.781174 ACTAGTAGGCAGCTAGGAGTCT 59.219 50.000 16.14 0.00 40.01 3.24
2131 2530 3.217681 ACTAGTAGGCAGCTAGGAGTC 57.782 52.381 16.14 0.00 40.01 3.36
2132 2531 4.360951 CTACTAGTAGGCAGCTAGGAGT 57.639 50.000 20.44 4.32 40.76 3.85
2134 2533 3.748027 GCACTACTAGTAGGCAGCTAGGA 60.748 52.174 29.05 9.32 40.01 2.94
2136 2535 3.215151 TGCACTACTAGTAGGCAGCTAG 58.785 50.000 27.98 11.27 41.11 3.42
2137 2536 3.215151 CTGCACTACTAGTAGGCAGCTA 58.785 50.000 34.98 23.33 43.46 3.32
2138 2537 2.028130 CTGCACTACTAGTAGGCAGCT 58.972 52.381 34.98 17.45 43.46 4.24
2139 2538 1.067821 CCTGCACTACTAGTAGGCAGC 59.932 57.143 37.17 31.73 45.49 5.25
2140 2539 2.656002 TCCTGCACTACTAGTAGGCAG 58.344 52.381 36.46 36.46 45.89 4.85
2141 2540 2.820728 TCCTGCACTACTAGTAGGCA 57.179 50.000 28.87 28.87 38.57 4.75
2142 2541 2.959707 ACATCCTGCACTACTAGTAGGC 59.040 50.000 29.05 26.70 38.57 3.93
2150 2554 3.185246 AGCACATACATCCTGCACTAC 57.815 47.619 0.00 0.00 33.06 2.73
2246 2657 3.958147 AAGCGGTCCACCAGCATCG 62.958 63.158 12.88 0.00 37.78 3.84
2257 2668 1.002792 GTGTTCAAACAGGAAGCGGTC 60.003 52.381 0.00 0.00 40.05 4.79
2275 2686 2.740055 GAGGTCCAGCAGCACGTG 60.740 66.667 12.28 12.28 0.00 4.49
2348 2759 5.036117 TCATGGAATGTAAGAGCTTACCC 57.964 43.478 15.58 10.99 46.80 3.69
2365 2776 5.664457 TGTCTACTTGAGCAGTATTCATGG 58.336 41.667 0.00 0.00 37.36 3.66
2370 2781 7.649705 CGTTCATATGTCTACTTGAGCAGTATT 59.350 37.037 1.90 0.00 37.36 1.89
2385 2803 2.594962 CGGCCGGCGTTCATATGTC 61.595 63.158 22.54 0.43 0.00 3.06
2404 2822 4.080919 GCAAAAGGGGAAATAAATCAGCCT 60.081 41.667 0.00 0.00 0.00 4.58
2443 2873 3.741344 CGACCACCAGCAGCTATATAAAC 59.259 47.826 0.00 0.00 0.00 2.01
2444 2874 3.802329 GCGACCACCAGCAGCTATATAAA 60.802 47.826 0.00 0.00 0.00 1.40
2447 2877 0.034059 GCGACCACCAGCAGCTATAT 59.966 55.000 0.00 0.00 0.00 0.86
2448 2878 1.441729 GCGACCACCAGCAGCTATA 59.558 57.895 0.00 0.00 0.00 1.31
2449 2879 2.187946 GCGACCACCAGCAGCTAT 59.812 61.111 0.00 0.00 0.00 2.97
2450 2880 4.082523 GGCGACCACCAGCAGCTA 62.083 66.667 0.00 0.00 34.54 3.32
2484 2914 1.003118 AGTAGGCCATTTCGTCAAGCA 59.997 47.619 5.01 0.00 0.00 3.91
2493 2923 1.940613 GCGATTTCGAGTAGGCCATTT 59.059 47.619 5.01 0.00 43.02 2.32
2494 2924 1.583054 GCGATTTCGAGTAGGCCATT 58.417 50.000 5.01 0.00 43.02 3.16
2583 3013 4.379243 CCTTGTCGAGCAGGGCGT 62.379 66.667 2.25 0.00 37.53 5.68
2602 3032 2.844362 CCCCTGGCCAGCTCGATA 60.844 66.667 28.39 0.00 0.00 2.92
2643 3073 2.062177 GGTCGATCCTTCCGGGGAA 61.062 63.158 0.00 0.00 39.02 3.97
2644 3074 2.443390 GGTCGATCCTTCCGGGGA 60.443 66.667 0.00 0.49 39.95 4.81
2645 3075 2.100879 GATGGTCGATCCTTCCGGGG 62.101 65.000 0.00 0.00 35.21 5.73
2646 3076 1.367840 GATGGTCGATCCTTCCGGG 59.632 63.158 0.00 0.00 35.21 5.73
2647 3077 1.007271 CGATGGTCGATCCTTCCGG 60.007 63.158 0.00 0.00 43.74 5.14
2648 3078 2.030551 TCGATGGTCGATCCTTCCG 58.969 57.895 0.00 1.03 44.82 4.30
2661 3091 2.035961 AGTCCGTAACCATGGATCGATG 59.964 50.000 21.47 10.54 41.97 3.84
2708 3141 0.576798 ACGTACGCATGCATTCATCG 59.423 50.000 19.57 14.39 33.01 3.84
2719 3152 3.342627 GCTGCAACCACGTACGCA 61.343 61.111 16.72 2.69 0.00 5.24
2720 3153 2.887889 TTGCTGCAACCACGTACGC 61.888 57.895 16.72 0.00 0.00 4.42
2721 3154 1.083015 GTTGCTGCAACCACGTACG 60.083 57.895 30.11 15.01 38.30 3.67
2722 3155 1.193874 GTAGTTGCTGCAACCACGTAC 59.806 52.381 34.59 26.52 44.49 3.67
2723 3156 1.069513 AGTAGTTGCTGCAACCACGTA 59.930 47.619 34.59 21.11 44.49 3.57
2724 3157 0.179056 AGTAGTTGCTGCAACCACGT 60.179 50.000 34.59 22.05 44.49 4.49
2725 3158 0.944386 AAGTAGTTGCTGCAACCACG 59.056 50.000 34.59 0.00 44.49 4.94
2726 3159 1.069906 CGAAGTAGTTGCTGCAACCAC 60.070 52.381 34.59 31.50 44.49 4.16
2727 3160 1.225855 CGAAGTAGTTGCTGCAACCA 58.774 50.000 34.59 23.53 44.49 3.67
2728 3161 1.069906 CACGAAGTAGTTGCTGCAACC 60.070 52.381 34.59 23.25 41.96 3.77
2901 3334 1.003003 TCGCCCATGTTCATGAACTGA 59.997 47.619 32.57 18.42 41.67 3.41
3069 3502 1.520120 CTGCACGCCATCGATCAGT 60.520 57.895 0.00 0.00 39.41 3.41
3070 3503 1.213733 CTCTGCACGCCATCGATCAG 61.214 60.000 0.00 0.00 38.68 2.90
3196 3633 1.067565 GTGATGAGAGTGGCGAGACAA 60.068 52.381 0.00 0.00 0.00 3.18
3279 3716 2.649516 CGCAAATGTCGACAACAACAT 58.350 42.857 24.13 0.98 42.37 2.71
3295 3732 3.443329 AGGAACATTCATATTGTGCGCAA 59.557 39.130 14.00 16.21 39.16 4.85
3296 3733 3.016031 AGGAACATTCATATTGTGCGCA 58.984 40.909 5.66 5.66 0.00 6.09
3299 3736 5.314923 ACACAGGAACATTCATATTGTGC 57.685 39.130 13.21 0.00 0.00 4.57
3318 3755 4.901868 TCACCTACACCAAAATCCTACAC 58.098 43.478 0.00 0.00 0.00 2.90
3325 3762 4.119862 CGATCGATCACCTACACCAAAAT 58.880 43.478 24.40 0.00 0.00 1.82
3368 3805 2.298610 ACGACAGACACAGACAGAGAA 58.701 47.619 0.00 0.00 0.00 2.87
3374 3811 3.351020 ACTACAACGACAGACACAGAC 57.649 47.619 0.00 0.00 0.00 3.51
3375 3812 4.357142 GAAACTACAACGACAGACACAGA 58.643 43.478 0.00 0.00 0.00 3.41
3376 3813 3.179795 CGAAACTACAACGACAGACACAG 59.820 47.826 0.00 0.00 0.00 3.66
3380 3817 3.004024 TCCGAAACTACAACGACAGAC 57.996 47.619 0.00 0.00 0.00 3.51
3417 3854 7.639162 ACAGACAATAGAGAAACAAACTACG 57.361 36.000 0.00 0.00 0.00 3.51
3438 3875 1.877443 CACCCCTAACAAACCGAACAG 59.123 52.381 0.00 0.00 0.00 3.16
3479 3918 5.586243 ACAAAACATAGTACTGCTGCCATAG 59.414 40.000 5.39 0.00 0.00 2.23
3489 3928 5.562298 ACCTGGACACAAAACATAGTACT 57.438 39.130 0.00 0.00 0.00 2.73
3521 3960 3.906720 TTATCCAGCCAAGTACCTCAC 57.093 47.619 0.00 0.00 0.00 3.51
3536 3975 9.722056 CTGTTCATAAAACTGCAGTATTTATCC 57.278 33.333 26.65 21.07 29.24 2.59
3543 3982 6.293407 GCAACTCTGTTCATAAAACTGCAGTA 60.293 38.462 22.01 4.74 0.00 2.74
3549 3988 8.947055 AAAATTGCAACTCTGTTCATAAAACT 57.053 26.923 0.00 0.00 0.00 2.66
3564 4244 4.749099 TGCTGTTGACCATAAAATTGCAAC 59.251 37.500 0.00 0.00 36.92 4.17
3629 4311 4.602340 AGTTTCCAACACAGATCGTAGT 57.398 40.909 0.00 0.00 0.00 2.73
3638 4320 1.440938 CGGCCGAAGTTTCCAACACA 61.441 55.000 24.07 0.00 0.00 3.72
3639 4321 1.281656 CGGCCGAAGTTTCCAACAC 59.718 57.895 24.07 0.00 0.00 3.32
3640 4322 1.894756 CCGGCCGAAGTTTCCAACA 60.895 57.895 30.73 0.00 0.00 3.33
3670 4352 0.966179 AAGACCGGCCCAAATTCAAC 59.034 50.000 0.00 0.00 0.00 3.18
3719 4401 4.615121 CCACAACGAAATCACCAAATTACG 59.385 41.667 0.00 0.00 0.00 3.18
3779 7254 6.479660 ACATTGAAACAAAGTATTGCCACTTG 59.520 34.615 0.00 0.00 38.74 3.16
3780 7255 6.581712 ACATTGAAACAAAGTATTGCCACTT 58.418 32.000 0.00 0.00 40.34 3.16
3781 7256 6.160576 ACATTGAAACAAAGTATTGCCACT 57.839 33.333 0.00 0.00 40.34 4.00
3782 7257 6.843069 AACATTGAAACAAAGTATTGCCAC 57.157 33.333 0.00 0.00 40.34 5.01
3783 7258 7.335422 ACAAAACATTGAAACAAAGTATTGCCA 59.665 29.630 0.00 0.00 40.34 4.92
3784 7259 7.639461 CACAAAACATTGAAACAAAGTATTGCC 59.361 33.333 0.00 0.00 40.34 4.52
3788 7263 8.037758 TGGACACAAAACATTGAAACAAAGTAT 58.962 29.630 0.00 0.00 0.00 2.12
3902 7400 2.853594 CGATCGGCCACAAAATTGAATG 59.146 45.455 7.38 0.00 0.00 2.67
3907 7405 0.109319 GCACGATCGGCCACAAAATT 60.109 50.000 20.98 0.00 0.00 1.82
3913 7411 0.319900 ATCATAGCACGATCGGCCAC 60.320 55.000 20.98 5.46 0.00 5.01
3915 7413 1.071605 GAATCATAGCACGATCGGCC 58.928 55.000 20.98 9.60 0.00 6.13
3919 7417 3.124806 CCAGCATGAATCATAGCACGATC 59.875 47.826 15.95 0.00 39.69 3.69
3920 7418 3.072211 CCAGCATGAATCATAGCACGAT 58.928 45.455 15.95 0.00 39.69 3.73
3921 7419 2.102925 TCCAGCATGAATCATAGCACGA 59.897 45.455 15.95 9.76 39.69 4.35
3922 7420 2.486918 TCCAGCATGAATCATAGCACG 58.513 47.619 15.95 8.99 39.69 5.34
3923 7421 4.337555 AGTTTCCAGCATGAATCATAGCAC 59.662 41.667 15.95 7.98 39.69 4.40
3964 7463 6.016610 GCAATAAAATATCGGCCCAGACTAAA 60.017 38.462 0.00 0.00 0.00 1.85
4066 7570 9.294030 CTAGCAAGAATGAACCATAAAAATGAC 57.706 33.333 0.00 0.00 0.00 3.06
4197 7702 5.618236 TGGCAAACATGGAAATCATTTCAA 58.382 33.333 12.27 0.45 41.43 2.69
4204 7709 5.343307 AATACCTGGCAAACATGGAAATC 57.657 39.130 0.00 0.00 0.00 2.17
4205 7710 5.760484 AAATACCTGGCAAACATGGAAAT 57.240 34.783 0.00 0.00 0.00 2.17
4206 7711 5.559148 AAAATACCTGGCAAACATGGAAA 57.441 34.783 0.00 0.00 0.00 3.13
4207 7712 5.559148 AAAAATACCTGGCAAACATGGAA 57.441 34.783 0.00 0.00 0.00 3.53
4280 7785 9.614792 ATCAAGTTCTTTGTAACTGTAGAAACT 57.385 29.630 0.00 0.00 39.62 2.66
4318 7823 8.100791 GCCATTGGTGATATTACCTCAACTATA 58.899 37.037 16.91 0.00 41.43 1.31
4319 7824 6.942576 GCCATTGGTGATATTACCTCAACTAT 59.057 38.462 16.91 0.00 41.43 2.12
4320 7825 6.296026 GCCATTGGTGATATTACCTCAACTA 58.704 40.000 16.91 0.00 41.43 2.24
4321 7826 5.133221 GCCATTGGTGATATTACCTCAACT 58.867 41.667 16.91 0.00 41.43 3.16
4322 7827 4.024048 CGCCATTGGTGATATTACCTCAAC 60.024 45.833 16.91 0.00 41.43 3.18
4323 7828 4.133820 CGCCATTGGTGATATTACCTCAA 58.866 43.478 16.91 5.22 41.43 3.02
4324 7829 3.738982 CGCCATTGGTGATATTACCTCA 58.261 45.455 16.91 5.11 41.43 3.86
4325 7830 2.484264 GCGCCATTGGTGATATTACCTC 59.516 50.000 20.37 0.00 41.43 3.85
4326 7831 2.504367 GCGCCATTGGTGATATTACCT 58.496 47.619 20.37 0.00 41.43 3.08
4327 7832 1.539827 GGCGCCATTGGTGATATTACC 59.460 52.381 24.80 9.72 41.24 2.85
4328 7833 2.504367 AGGCGCCATTGGTGATATTAC 58.496 47.619 31.54 0.74 34.74 1.89
4329 7834 2.949177 AGGCGCCATTGGTGATATTA 57.051 45.000 31.54 0.00 34.74 0.98
4330 7835 2.949177 TAGGCGCCATTGGTGATATT 57.051 45.000 31.54 5.27 34.74 1.28
4331 7836 2.884639 GTTTAGGCGCCATTGGTGATAT 59.115 45.455 31.54 5.89 34.74 1.63
4332 7837 2.092646 AGTTTAGGCGCCATTGGTGATA 60.093 45.455 31.54 6.42 34.74 2.15
4333 7838 1.102978 GTTTAGGCGCCATTGGTGAT 58.897 50.000 31.54 7.63 34.74 3.06
4334 7839 0.037590 AGTTTAGGCGCCATTGGTGA 59.962 50.000 31.54 0.00 34.74 4.02
4335 7840 0.887933 AAGTTTAGGCGCCATTGGTG 59.112 50.000 31.54 12.04 36.10 4.17
4336 7841 0.887933 CAAGTTTAGGCGCCATTGGT 59.112 50.000 31.54 10.27 0.00 3.67
4337 7842 1.173043 TCAAGTTTAGGCGCCATTGG 58.827 50.000 31.54 11.11 0.00 3.16
4338 7843 3.296322 TTTCAAGTTTAGGCGCCATTG 57.704 42.857 31.54 22.63 0.00 2.82
4339 7844 4.329462 TTTTTCAAGTTTAGGCGCCATT 57.671 36.364 31.54 12.06 0.00 3.16
4340 7845 4.535526 ATTTTTCAAGTTTAGGCGCCAT 57.464 36.364 31.54 16.46 0.00 4.40
4341 7846 4.278669 TGTATTTTTCAAGTTTAGGCGCCA 59.721 37.500 31.54 12.31 0.00 5.69
4342 7847 4.619760 GTGTATTTTTCAAGTTTAGGCGCC 59.380 41.667 21.89 21.89 0.00 6.53
4343 7848 4.619760 GGTGTATTTTTCAAGTTTAGGCGC 59.380 41.667 0.00 0.00 0.00 6.53
4344 7849 4.849383 CGGTGTATTTTTCAAGTTTAGGCG 59.151 41.667 0.00 0.00 0.00 5.52
4345 7850 6.004408 TCGGTGTATTTTTCAAGTTTAGGC 57.996 37.500 0.00 0.00 0.00 3.93
4346 7851 8.911662 CAATTCGGTGTATTTTTCAAGTTTAGG 58.088 33.333 0.00 0.00 0.00 2.69
4347 7852 8.911662 CCAATTCGGTGTATTTTTCAAGTTTAG 58.088 33.333 0.00 0.00 0.00 1.85
4348 7853 8.804688 CCAATTCGGTGTATTTTTCAAGTTTA 57.195 30.769 0.00 0.00 0.00 2.01
4349 7854 7.707774 CCAATTCGGTGTATTTTTCAAGTTT 57.292 32.000 0.00 0.00 0.00 2.66
4365 7870 4.157656 TGCCAAATTCTAGAACCAATTCGG 59.842 41.667 7.48 0.00 40.04 4.30
4366 7871 5.095490 GTGCCAAATTCTAGAACCAATTCG 58.905 41.667 7.48 0.00 40.04 3.34
4367 7872 6.024552 TGTGCCAAATTCTAGAACCAATTC 57.975 37.500 7.48 0.00 34.78 2.17
4368 7873 6.418057 TTGTGCCAAATTCTAGAACCAATT 57.582 33.333 7.48 0.00 0.00 2.32
4369 7874 5.567423 GCTTGTGCCAAATTCTAGAACCAAT 60.567 40.000 7.48 0.00 0.00 3.16
4370 7875 4.261994 GCTTGTGCCAAATTCTAGAACCAA 60.262 41.667 7.48 2.27 0.00 3.67
4371 7876 3.255642 GCTTGTGCCAAATTCTAGAACCA 59.744 43.478 7.48 0.00 0.00 3.67
4372 7877 3.670627 CGCTTGTGCCAAATTCTAGAACC 60.671 47.826 7.48 0.00 35.36 3.62
4373 7878 3.058224 ACGCTTGTGCCAAATTCTAGAAC 60.058 43.478 7.48 0.00 35.36 3.01
4374 7879 3.058293 CACGCTTGTGCCAAATTCTAGAA 60.058 43.478 7.82 7.82 36.68 2.10
4375 7880 2.483877 CACGCTTGTGCCAAATTCTAGA 59.516 45.455 0.00 0.00 36.68 2.43
4376 7881 2.855180 CACGCTTGTGCCAAATTCTAG 58.145 47.619 0.00 0.00 36.68 2.43
4377 7882 2.987413 CACGCTTGTGCCAAATTCTA 57.013 45.000 0.00 0.00 36.68 2.10
4378 7883 3.871775 CACGCTTGTGCCAAATTCT 57.128 47.368 0.00 0.00 36.68 2.40
4387 7892 0.237235 ACCGTATTTGCACGCTTGTG 59.763 50.000 0.00 0.00 46.67 3.33
4388 7893 0.237235 CACCGTATTTGCACGCTTGT 59.763 50.000 0.00 0.00 40.59 3.16
4389 7894 0.515127 TCACCGTATTTGCACGCTTG 59.485 50.000 0.00 0.00 40.59 4.01
4390 7895 1.448985 ATCACCGTATTTGCACGCTT 58.551 45.000 0.00 0.00 40.59 4.68
4391 7896 2.303163 TATCACCGTATTTGCACGCT 57.697 45.000 0.00 0.00 40.59 5.07
4392 7897 3.247648 AGATTATCACCGTATTTGCACGC 59.752 43.478 0.00 0.00 40.59 5.34
4393 7898 4.506288 TGAGATTATCACCGTATTTGCACG 59.494 41.667 0.00 0.00 35.84 5.34
4394 7899 5.984233 TGAGATTATCACCGTATTTGCAC 57.016 39.130 0.00 0.00 31.12 4.57
4395 7900 5.700832 GGATGAGATTATCACCGTATTTGCA 59.299 40.000 0.00 0.00 41.91 4.08
4396 7901 5.700832 TGGATGAGATTATCACCGTATTTGC 59.299 40.000 0.00 0.00 41.91 3.68
4397 7902 6.147821 GGTGGATGAGATTATCACCGTATTTG 59.852 42.308 0.00 0.00 41.91 2.32
4398 7903 6.183361 TGGTGGATGAGATTATCACCGTATTT 60.183 38.462 0.00 0.00 41.91 1.40
4399 7904 5.306937 TGGTGGATGAGATTATCACCGTATT 59.693 40.000 0.00 0.00 41.91 1.89
4400 7905 4.838423 TGGTGGATGAGATTATCACCGTAT 59.162 41.667 0.00 0.00 41.91 3.06
4401 7906 4.219919 TGGTGGATGAGATTATCACCGTA 58.780 43.478 0.00 0.00 41.91 4.02
4402 7907 3.038280 TGGTGGATGAGATTATCACCGT 58.962 45.455 0.00 0.00 41.91 4.83
4403 7908 3.321968 TCTGGTGGATGAGATTATCACCG 59.678 47.826 0.00 0.00 41.91 4.94
4404 7909 4.636249 GTCTGGTGGATGAGATTATCACC 58.364 47.826 0.00 0.00 41.91 4.02
4405 7910 4.202161 ACGTCTGGTGGATGAGATTATCAC 60.202 45.833 0.00 0.00 41.91 3.06
4406 7911 3.960755 ACGTCTGGTGGATGAGATTATCA 59.039 43.478 0.00 0.00 43.70 2.15
4407 7912 4.592485 ACGTCTGGTGGATGAGATTATC 57.408 45.455 0.00 0.00 35.12 1.75
4408 7913 6.948886 ACTATACGTCTGGTGGATGAGATTAT 59.051 38.462 0.00 0.00 35.12 1.28
4409 7914 6.206829 CACTATACGTCTGGTGGATGAGATTA 59.793 42.308 9.23 0.00 35.12 1.75
4410 7915 5.010112 CACTATACGTCTGGTGGATGAGATT 59.990 44.000 9.23 0.00 35.12 2.40
4411 7916 4.520874 CACTATACGTCTGGTGGATGAGAT 59.479 45.833 9.23 0.00 35.12 2.75
4412 7917 3.883489 CACTATACGTCTGGTGGATGAGA 59.117 47.826 9.23 0.00 35.12 3.27
4413 7918 3.551046 GCACTATACGTCTGGTGGATGAG 60.551 52.174 17.08 0.00 35.12 2.90
4414 7919 2.361119 GCACTATACGTCTGGTGGATGA 59.639 50.000 17.08 0.00 35.12 2.92
4415 7920 2.743938 GCACTATACGTCTGGTGGATG 58.256 52.381 17.08 0.00 37.02 3.51
4416 7921 1.337071 CGCACTATACGTCTGGTGGAT 59.663 52.381 17.08 0.00 0.00 3.41
4417 7922 0.736636 CGCACTATACGTCTGGTGGA 59.263 55.000 17.08 0.00 0.00 4.02
4418 7923 0.870307 GCGCACTATACGTCTGGTGG 60.870 60.000 17.08 9.57 0.00 4.61
4419 7924 0.100682 AGCGCACTATACGTCTGGTG 59.899 55.000 11.47 12.26 0.00 4.17
4420 7925 0.100682 CAGCGCACTATACGTCTGGT 59.899 55.000 11.47 0.00 33.80 4.00
4421 7926 0.380733 TCAGCGCACTATACGTCTGG 59.619 55.000 11.47 0.00 36.23 3.86
4422 7927 2.047040 CATCAGCGCACTATACGTCTG 58.953 52.381 11.47 0.00 36.60 3.51
4423 7928 1.676529 ACATCAGCGCACTATACGTCT 59.323 47.619 11.47 0.00 0.00 4.18
4424 7929 1.781429 CACATCAGCGCACTATACGTC 59.219 52.381 11.47 0.00 0.00 4.34
4425 7930 1.536072 CCACATCAGCGCACTATACGT 60.536 52.381 11.47 0.00 0.00 3.57
4426 7931 1.131771 CCACATCAGCGCACTATACG 58.868 55.000 11.47 0.00 0.00 3.06
4427 7932 0.861837 GCCACATCAGCGCACTATAC 59.138 55.000 11.47 0.00 0.00 1.47
4428 7933 3.289128 GCCACATCAGCGCACTATA 57.711 52.632 11.47 0.00 0.00 1.31
4429 7934 4.131376 GCCACATCAGCGCACTAT 57.869 55.556 11.47 0.00 0.00 2.12
4436 7941 0.670162 AAATATGGCGCCACATCAGC 59.330 50.000 35.50 0.00 32.39 4.26
4437 7942 3.441496 AAAAATATGGCGCCACATCAG 57.559 42.857 35.50 0.00 32.39 2.90
4438 7943 4.320129 CGATAAAAATATGGCGCCACATCA 60.320 41.667 35.50 18.02 32.39 3.07
4439 7944 4.158384 CGATAAAAATATGGCGCCACATC 58.842 43.478 35.50 21.62 32.39 3.06
4440 7945 3.057596 CCGATAAAAATATGGCGCCACAT 60.058 43.478 35.50 26.06 34.90 3.21
4441 7946 2.292016 CCGATAAAAATATGGCGCCACA 59.708 45.455 35.50 24.58 0.00 4.17
4442 7947 2.920647 GCCGATAAAAATATGGCGCCAC 60.921 50.000 35.50 15.00 35.77 5.01
4443 7948 1.268352 GCCGATAAAAATATGGCGCCA 59.732 47.619 34.80 34.80 35.77 5.69
4444 7949 1.977188 GCCGATAAAAATATGGCGCC 58.023 50.000 22.73 22.73 35.77 6.53
4447 7952 3.674753 GTGCATGCCGATAAAAATATGGC 59.325 43.478 16.68 0.00 45.91 4.40
4448 7953 4.681025 GTGTGCATGCCGATAAAAATATGG 59.319 41.667 16.68 0.00 0.00 2.74
4449 7954 4.379498 CGTGTGCATGCCGATAAAAATATG 59.621 41.667 16.68 0.00 0.00 1.78
4450 7955 4.036262 ACGTGTGCATGCCGATAAAAATAT 59.964 37.500 19.50 0.00 0.00 1.28
4451 7956 3.375610 ACGTGTGCATGCCGATAAAAATA 59.624 39.130 19.50 0.00 0.00 1.40
4452 7957 2.163412 ACGTGTGCATGCCGATAAAAAT 59.837 40.909 19.50 0.00 0.00 1.82
4453 7958 1.537638 ACGTGTGCATGCCGATAAAAA 59.462 42.857 19.50 0.00 0.00 1.94
4454 7959 1.135831 CACGTGTGCATGCCGATAAAA 60.136 47.619 19.50 0.00 0.00 1.52
4455 7960 0.445829 CACGTGTGCATGCCGATAAA 59.554 50.000 19.50 0.00 0.00 1.40
4456 7961 1.365368 CCACGTGTGCATGCCGATAA 61.365 55.000 19.50 0.00 0.00 1.75
4457 7962 1.813337 CCACGTGTGCATGCCGATA 60.813 57.895 19.50 0.00 0.00 2.92
4458 7963 3.126879 CCACGTGTGCATGCCGAT 61.127 61.111 19.50 3.61 0.00 4.18
4465 7970 1.960763 GTCTCATGCCACGTGTGCA 60.961 57.895 26.46 26.46 43.97 4.57
4466 7971 2.680913 GGTCTCATGCCACGTGTGC 61.681 63.158 15.65 17.32 0.00 4.57
4467 7972 2.034879 GGGTCTCATGCCACGTGTG 61.035 63.158 15.65 6.55 0.00 3.82
4468 7973 2.347490 GGGTCTCATGCCACGTGT 59.653 61.111 15.65 0.00 0.00 4.49
4469 7974 2.034879 GTGGGTCTCATGCCACGTG 61.035 63.158 9.08 9.08 0.00 4.49
4470 7975 1.768684 AAGTGGGTCTCATGCCACGT 61.769 55.000 12.75 8.29 38.11 4.49
4471 7976 0.249120 TAAGTGGGTCTCATGCCACG 59.751 55.000 12.75 0.00 38.11 4.94
4472 7977 2.717639 ATAAGTGGGTCTCATGCCAC 57.282 50.000 11.16 11.16 0.00 5.01
4473 7978 3.521531 TGTTATAAGTGGGTCTCATGCCA 59.478 43.478 0.00 0.00 0.00 4.92
4474 7979 3.877508 GTGTTATAAGTGGGTCTCATGCC 59.122 47.826 0.00 0.00 0.00 4.40
4475 7980 4.513442 TGTGTTATAAGTGGGTCTCATGC 58.487 43.478 0.00 0.00 0.00 4.06
4476 7981 5.008019 GCATGTGTTATAAGTGGGTCTCATG 59.992 44.000 0.00 0.00 34.19 3.07
4477 7982 5.104360 AGCATGTGTTATAAGTGGGTCTCAT 60.104 40.000 0.00 0.00 0.00 2.90
4478 7983 4.225042 AGCATGTGTTATAAGTGGGTCTCA 59.775 41.667 0.00 0.00 0.00 3.27
4479 7984 4.770795 AGCATGTGTTATAAGTGGGTCTC 58.229 43.478 0.00 0.00 0.00 3.36
4480 7985 4.844349 AGCATGTGTTATAAGTGGGTCT 57.156 40.909 0.00 0.00 0.00 3.85
4481 7986 5.897377 AAAGCATGTGTTATAAGTGGGTC 57.103 39.130 0.00 0.00 0.00 4.46
4482 7987 7.954666 AATAAAGCATGTGTTATAAGTGGGT 57.045 32.000 0.00 0.00 0.00 4.51
4506 8011 9.061435 CCGCTGATCATAGAGAGATACATATAA 57.939 37.037 0.00 0.00 0.00 0.98
4507 8012 7.663493 CCCGCTGATCATAGAGAGATACATATA 59.337 40.741 0.00 0.00 0.00 0.86
4508 8013 6.489700 CCCGCTGATCATAGAGAGATACATAT 59.510 42.308 0.00 0.00 0.00 1.78
4509 8014 5.825151 CCCGCTGATCATAGAGAGATACATA 59.175 44.000 0.00 0.00 0.00 2.29
4510 8015 4.644234 CCCGCTGATCATAGAGAGATACAT 59.356 45.833 0.00 0.00 0.00 2.29
4511 8016 4.013050 CCCGCTGATCATAGAGAGATACA 58.987 47.826 0.00 0.00 0.00 2.29
4512 8017 3.181491 GCCCGCTGATCATAGAGAGATAC 60.181 52.174 0.00 0.00 0.00 2.24
4513 8018 3.020274 GCCCGCTGATCATAGAGAGATA 58.980 50.000 0.00 0.00 0.00 1.98
4514 8019 1.824230 GCCCGCTGATCATAGAGAGAT 59.176 52.381 0.00 0.00 0.00 2.75
4515 8020 1.252175 GCCCGCTGATCATAGAGAGA 58.748 55.000 0.00 0.00 0.00 3.10
4516 8021 0.246086 GGCCCGCTGATCATAGAGAG 59.754 60.000 0.00 0.00 0.00 3.20
4517 8022 1.188219 GGGCCCGCTGATCATAGAGA 61.188 60.000 5.69 0.00 0.00 3.10
4518 8023 1.294780 GGGCCCGCTGATCATAGAG 59.705 63.158 5.69 0.00 0.00 2.43
4519 8024 0.837691 ATGGGCCCGCTGATCATAGA 60.838 55.000 19.37 0.00 0.00 1.98
4520 8025 0.904649 TATGGGCCCGCTGATCATAG 59.095 55.000 19.37 0.00 0.00 2.23
4521 8026 1.210234 CATATGGGCCCGCTGATCATA 59.790 52.381 19.37 7.81 0.00 2.15
4522 8027 0.034767 CATATGGGCCCGCTGATCAT 60.035 55.000 19.37 5.41 0.00 2.45
4523 8028 1.376086 CATATGGGCCCGCTGATCA 59.624 57.895 19.37 0.00 0.00 2.92
4524 8029 0.674895 GACATATGGGCCCGCTGATC 60.675 60.000 19.37 8.43 0.00 2.92
4525 8030 1.376466 GACATATGGGCCCGCTGAT 59.624 57.895 19.37 7.53 0.00 2.90
4526 8031 2.043604 CTGACATATGGGCCCGCTGA 62.044 60.000 19.37 0.00 0.00 4.26
4527 8032 1.598962 CTGACATATGGGCCCGCTG 60.599 63.158 19.37 16.58 0.00 5.18
4528 8033 2.831770 CTGACATATGGGCCCGCT 59.168 61.111 19.37 9.91 0.00 5.52
4529 8034 2.980233 GCTGACATATGGGCCCGC 60.980 66.667 19.37 7.92 0.00 6.13
4530 8035 2.281761 GGCTGACATATGGGCCCG 60.282 66.667 19.37 4.81 38.77 6.13
4531 8036 2.281761 CGGCTGACATATGGGCCC 60.282 66.667 17.59 17.59 41.35 5.80
4532 8037 1.302033 CTCGGCTGACATATGGGCC 60.302 63.158 19.82 19.82 41.02 5.80
4533 8038 0.320247 CTCTCGGCTGACATATGGGC 60.320 60.000 7.80 8.18 0.00 5.36
4534 8039 0.319728 CCTCTCGGCTGACATATGGG 59.680 60.000 7.80 0.00 0.00 4.00
4535 8040 1.332195 TCCTCTCGGCTGACATATGG 58.668 55.000 7.80 0.00 0.00 2.74
4536 8041 3.459232 TTTCCTCTCGGCTGACATATG 57.541 47.619 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.