Multiple sequence alignment - TraesCS4B01G262900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G262900 chr4B 100.000 3678 0 0 1 3678 532721813 532718136 0.000000e+00 6793.0
1 TraesCS4B01G262900 chr4B 80.227 1588 257 47 1031 2590 532582805 532581247 0.000000e+00 1140.0
2 TraesCS4B01G262900 chr4B 85.047 107 14 2 3279 3383 417220319 417220213 1.400000e-19 108.0
3 TraesCS4B01G262900 chr4B 97.143 35 1 0 472 506 54990651 54990685 3.970000e-05 60.2
4 TraesCS4B01G262900 chr4B 97.143 35 1 0 472 506 210818305 210818271 3.970000e-05 60.2
5 TraesCS4B01G262900 chr4B 97.143 35 1 0 472 506 418730440 418730406 3.970000e-05 60.2
6 TraesCS4B01G262900 chr4D 96.103 2643 72 21 496 3120 434148056 434145427 0.000000e+00 4281.0
7 TraesCS4B01G262900 chr4D 79.521 1587 270 44 1031 2590 434031035 434029477 0.000000e+00 1079.0
8 TraesCS4B01G262900 chr4D 80.460 174 33 1 3333 3506 499699702 499699530 8.290000e-27 132.0
9 TraesCS4B01G262900 chr4D 83.333 108 16 2 3278 3383 497062553 497062446 8.410000e-17 99.0
10 TraesCS4B01G262900 chr4A 93.961 2583 100 29 496 3050 35569213 35566659 0.000000e+00 3855.0
11 TraesCS4B01G262900 chr4A 79.861 1584 259 45 1036 2590 35478007 35476455 0.000000e+00 1103.0
12 TraesCS4B01G262900 chr4A 86.911 573 56 11 3119 3675 395019601 395019032 3.120000e-175 625.0
13 TraesCS4B01G262900 chr6D 87.840 551 47 11 3145 3676 461852178 461852727 2.410000e-176 628.0
14 TraesCS4B01G262900 chr7D 87.796 549 48 7 3147 3676 501440731 501440183 3.120000e-175 625.0
15 TraesCS4B01G262900 chr7A 86.888 572 57 9 3122 3676 8799394 8798824 3.120000e-175 625.0
16 TraesCS4B01G262900 chr7A 86.458 576 56 9 3119 3676 105224552 105225123 2.430000e-171 612.0
17 TraesCS4B01G262900 chr7A 86.679 548 55 6 3147 3676 700122279 700122826 3.160000e-165 592.0
18 TraesCS4B01G262900 chr7A 92.834 307 20 2 171 475 276816335 276816641 9.370000e-121 444.0
19 TraesCS4B01G262900 chr7A 94.472 199 11 0 2 200 458978776 458978578 1.280000e-79 307.0
20 TraesCS4B01G262900 chr5D 85.983 585 55 10 3119 3676 559101787 559101203 5.260000e-168 601.0
21 TraesCS4B01G262900 chr5D 75.696 539 116 11 1229 1759 497493014 497492483 4.710000e-64 255.0
22 TraesCS4B01G262900 chr5B 85.866 566 54 14 3121 3666 458699434 458698875 2.460000e-161 579.0
23 TraesCS4B01G262900 chr5B 96.797 281 5 4 198 475 207359430 207359709 2.000000e-127 466.0
24 TraesCS4B01G262900 chr5B 75.830 542 110 13 1229 1759 616439545 616439014 4.710000e-64 255.0
25 TraesCS4B01G262900 chr2A 86.182 550 55 7 3145 3676 12319499 12320045 3.190000e-160 575.0
26 TraesCS4B01G262900 chr2A 85.455 550 61 12 3145 3676 749854436 749853888 4.150000e-154 555.0
27 TraesCS4B01G262900 chr2A 95.000 200 10 0 2 201 45307463 45307662 7.670000e-82 315.0
28 TraesCS4B01G262900 chr6B 84.870 575 69 6 3120 3676 6599426 6600000 6.900000e-157 564.0
29 TraesCS4B01G262900 chr6B 85.336 566 58 7 3121 3668 35379484 35378926 2.480000e-156 562.0
30 TraesCS4B01G262900 chr6B 94.000 200 12 0 2 201 560742818 560743017 1.660000e-78 303.0
31 TraesCS4B01G262900 chr6B 76.305 249 36 15 3269 3505 62816763 62817000 1.080000e-20 111.0
32 TraesCS4B01G262900 chr2D 88.837 430 43 5 3241 3669 573906393 573905968 1.170000e-144 523.0
33 TraesCS4B01G262900 chr3A 87.229 462 50 8 19 475 739239435 739238978 5.440000e-143 518.0
34 TraesCS4B01G262900 chr7B 84.079 559 59 13 3145 3676 579827487 579826932 2.530000e-141 512.0
35 TraesCS4B01G262900 chr7B 95.517 290 11 2 187 475 96094535 96094247 2.590000e-126 462.0
36 TraesCS4B01G262900 chr7B 95.789 285 10 2 190 473 589400464 589400747 3.350000e-125 459.0
37 TraesCS4B01G262900 chr7B 83.521 267 27 5 3115 3364 453735940 453735674 2.210000e-57 233.0
38 TraesCS4B01G262900 chr7B 78.175 252 46 7 3234 3479 329857673 329857425 6.360000e-33 152.0
39 TraesCS4B01G262900 chr3B 95.862 290 10 2 187 475 621397775 621398063 5.560000e-128 468.0
40 TraesCS4B01G262900 chr2B 96.416 279 9 1 198 475 36443811 36444089 3.350000e-125 459.0
41 TraesCS4B01G262900 chr1B 96.099 282 10 1 198 478 301794731 301794450 3.350000e-125 459.0
42 TraesCS4B01G262900 chr1B 77.534 592 121 9 1234 1819 673992409 673992994 2.720000e-91 346.0
43 TraesCS4B01G262900 chr1B 93.204 206 13 1 2 207 456748100 456748304 5.970000e-78 302.0
44 TraesCS4B01G262900 chr1B 78.616 159 18 8 3334 3477 7495810 7495653 1.410000e-14 91.6
45 TraesCS4B01G262900 chr1B 92.000 50 3 1 3334 3383 6251014 6250966 6.590000e-08 69.4
46 TraesCS4B01G262900 chr1B 91.111 45 4 0 457 501 418825194 418825150 1.100000e-05 62.1
47 TraesCS4B01G262900 chr1B 97.143 35 1 0 472 506 99436527 99436493 3.970000e-05 60.2
48 TraesCS4B01G262900 chr1B 97.143 35 1 0 472 506 138647901 138647935 3.970000e-05 60.2
49 TraesCS4B01G262900 chr1B 97.143 35 1 0 472 506 172283207 172283173 3.970000e-05 60.2
50 TraesCS4B01G262900 chr1B 97.143 35 1 0 472 506 174450460 174450426 3.970000e-05 60.2
51 TraesCS4B01G262900 chr1B 97.143 35 1 0 472 506 469729625 469729659 3.970000e-05 60.2
52 TraesCS4B01G262900 chr6A 81.705 481 75 12 2 475 97090823 97091297 4.450000e-104 388.0
53 TraesCS4B01G262900 chr6A 90.517 232 17 4 3290 3520 74808411 74808184 5.970000e-78 302.0
54 TraesCS4B01G262900 chr6A 80.682 88 11 5 3293 3375 613076127 613076213 3.070000e-06 63.9
55 TraesCS4B01G262900 chr1A 78.173 591 119 7 1234 1819 580988492 580989077 5.800000e-98 368.0
56 TraesCS4B01G262900 chr1A 94.500 200 11 0 2 201 27754356 27754555 3.570000e-80 309.0
57 TraesCS4B01G262900 chr1A 79.845 129 22 2 3351 3478 408070497 408070372 1.410000e-14 91.6
58 TraesCS4B01G262900 chr1A 75.393 191 27 12 3335 3508 249024520 249024333 1.420000e-09 75.0
59 TraesCS4B01G262900 chr1D 77.872 592 119 9 1234 1819 483972824 483973409 1.260000e-94 357.0
60 TraesCS4B01G262900 chr1D 93.133 233 12 4 3290 3520 270618709 270618479 4.550000e-89 339.0
61 TraesCS4B01G262900 chr5A 94.634 205 10 1 2 206 496612896 496613099 2.130000e-82 316.0
62 TraesCS4B01G262900 chr5A 93.909 197 12 0 2 198 650691928 650692124 7.720000e-77 298.0
63 TraesCS4B01G262900 chr5A 75.281 623 131 16 1229 1839 621540191 621539580 3.620000e-70 276.0
64 TraesCS4B01G262900 chr3D 81.818 154 19 8 3351 3503 270461154 270461009 1.790000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G262900 chr4B 532718136 532721813 3677 True 6793 6793 100.000 1 3678 1 chr4B.!!$R5 3677
1 TraesCS4B01G262900 chr4B 532581247 532582805 1558 True 1140 1140 80.227 1031 2590 1 chr4B.!!$R4 1559
2 TraesCS4B01G262900 chr4D 434145427 434148056 2629 True 4281 4281 96.103 496 3120 1 chr4D.!!$R2 2624
3 TraesCS4B01G262900 chr4D 434029477 434031035 1558 True 1079 1079 79.521 1031 2590 1 chr4D.!!$R1 1559
4 TraesCS4B01G262900 chr4A 35566659 35569213 2554 True 3855 3855 93.961 496 3050 1 chr4A.!!$R2 2554
5 TraesCS4B01G262900 chr4A 35476455 35478007 1552 True 1103 1103 79.861 1036 2590 1 chr4A.!!$R1 1554
6 TraesCS4B01G262900 chr4A 395019032 395019601 569 True 625 625 86.911 3119 3675 1 chr4A.!!$R3 556
7 TraesCS4B01G262900 chr6D 461852178 461852727 549 False 628 628 87.840 3145 3676 1 chr6D.!!$F1 531
8 TraesCS4B01G262900 chr7D 501440183 501440731 548 True 625 625 87.796 3147 3676 1 chr7D.!!$R1 529
9 TraesCS4B01G262900 chr7A 8798824 8799394 570 True 625 625 86.888 3122 3676 1 chr7A.!!$R1 554
10 TraesCS4B01G262900 chr7A 105224552 105225123 571 False 612 612 86.458 3119 3676 1 chr7A.!!$F1 557
11 TraesCS4B01G262900 chr7A 700122279 700122826 547 False 592 592 86.679 3147 3676 1 chr7A.!!$F3 529
12 TraesCS4B01G262900 chr5D 559101203 559101787 584 True 601 601 85.983 3119 3676 1 chr5D.!!$R2 557
13 TraesCS4B01G262900 chr5D 497492483 497493014 531 True 255 255 75.696 1229 1759 1 chr5D.!!$R1 530
14 TraesCS4B01G262900 chr5B 458698875 458699434 559 True 579 579 85.866 3121 3666 1 chr5B.!!$R1 545
15 TraesCS4B01G262900 chr5B 616439014 616439545 531 True 255 255 75.830 1229 1759 1 chr5B.!!$R2 530
16 TraesCS4B01G262900 chr2A 12319499 12320045 546 False 575 575 86.182 3145 3676 1 chr2A.!!$F1 531
17 TraesCS4B01G262900 chr2A 749853888 749854436 548 True 555 555 85.455 3145 3676 1 chr2A.!!$R1 531
18 TraesCS4B01G262900 chr6B 6599426 6600000 574 False 564 564 84.870 3120 3676 1 chr6B.!!$F1 556
19 TraesCS4B01G262900 chr6B 35378926 35379484 558 True 562 562 85.336 3121 3668 1 chr6B.!!$R1 547
20 TraesCS4B01G262900 chr7B 579826932 579827487 555 True 512 512 84.079 3145 3676 1 chr7B.!!$R4 531
21 TraesCS4B01G262900 chr1B 673992409 673992994 585 False 346 346 77.534 1234 1819 1 chr1B.!!$F4 585
22 TraesCS4B01G262900 chr1A 580988492 580989077 585 False 368 368 78.173 1234 1819 1 chr1A.!!$F2 585
23 TraesCS4B01G262900 chr1D 483972824 483973409 585 False 357 357 77.872 1234 1819 1 chr1D.!!$F1 585
24 TraesCS4B01G262900 chr5A 621539580 621540191 611 True 276 276 75.281 1229 1839 1 chr5A.!!$R1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.105760 TGCAAGGGGTGTTGGTTCAT 60.106 50.000 0.00 0.00 0.00 2.57 F
472 473 0.115349 ACTCCCACTGTGGCTAGTCT 59.885 55.000 21.47 3.44 35.79 3.24 F
960 971 1.203187 TGACAGGGAGCTAGGTTCAGT 60.203 52.381 1.94 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1177 1194 1.002366 GTGTTAGCCACAGCATCGAG 58.998 55.000 0.00 0.00 43.92 4.04 R
1336 1373 3.160047 ATGAGCGAGCCCAGGAGG 61.160 66.667 0.00 0.00 39.47 4.30 R
2939 3000 3.390135 TCGGTGAAAAGATCTGTCACAC 58.610 45.455 28.13 20.69 42.81 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.764363 TGTATCTAGTTTGCCTAATAAGATGTG 57.236 33.333 0.00 0.00 0.00 3.21
29 30 9.982651 GTATCTAGTTTGCCTAATAAGATGTGA 57.017 33.333 0.00 0.00 0.00 3.58
31 32 8.306313 TCTAGTTTGCCTAATAAGATGTGAGA 57.694 34.615 0.00 0.00 0.00 3.27
32 33 8.928448 TCTAGTTTGCCTAATAAGATGTGAGAT 58.072 33.333 0.00 0.00 0.00 2.75
62 63 9.624373 AAATAATGTGCTCTCTCATTCTACATT 57.376 29.630 0.00 0.00 39.65 2.71
63 64 6.922247 AATGTGCTCTCTCATTCTACATTG 57.078 37.500 0.00 0.00 36.33 2.82
64 65 5.665916 TGTGCTCTCTCATTCTACATTGA 57.334 39.130 0.00 0.00 0.00 2.57
65 66 6.041423 TGTGCTCTCTCATTCTACATTGAA 57.959 37.500 0.00 0.00 0.00 2.69
66 67 6.104665 TGTGCTCTCTCATTCTACATTGAAG 58.895 40.000 0.00 0.00 0.00 3.02
67 68 5.006552 GTGCTCTCTCATTCTACATTGAAGC 59.993 44.000 0.00 0.00 0.00 3.86
68 69 5.105023 TGCTCTCTCATTCTACATTGAAGCT 60.105 40.000 0.00 0.00 0.00 3.74
69 70 5.816777 GCTCTCTCATTCTACATTGAAGCTT 59.183 40.000 0.00 0.00 0.00 3.74
70 71 6.238157 GCTCTCTCATTCTACATTGAAGCTTG 60.238 42.308 2.10 0.00 0.00 4.01
71 72 6.705302 TCTCTCATTCTACATTGAAGCTTGT 58.295 36.000 2.10 0.00 0.00 3.16
72 73 6.592994 TCTCTCATTCTACATTGAAGCTTGTG 59.407 38.462 2.10 2.35 0.00 3.33
73 74 5.122869 TCTCATTCTACATTGAAGCTTGTGC 59.877 40.000 2.10 0.00 40.05 4.57
74 75 4.761227 TCATTCTACATTGAAGCTTGTGCA 59.239 37.500 2.10 0.00 42.74 4.57
75 76 5.241285 TCATTCTACATTGAAGCTTGTGCAA 59.759 36.000 2.10 2.00 42.74 4.08
76 77 4.754372 TCTACATTGAAGCTTGTGCAAG 57.246 40.909 2.10 7.51 42.74 4.01
77 78 2.806608 ACATTGAAGCTTGTGCAAGG 57.193 45.000 2.10 6.59 42.74 3.61
78 79 1.342174 ACATTGAAGCTTGTGCAAGGG 59.658 47.619 2.10 1.75 42.74 3.95
79 80 0.971386 ATTGAAGCTTGTGCAAGGGG 59.029 50.000 2.10 0.00 42.74 4.79
80 81 0.396974 TTGAAGCTTGTGCAAGGGGT 60.397 50.000 2.10 0.00 42.74 4.95
81 82 1.108727 TGAAGCTTGTGCAAGGGGTG 61.109 55.000 2.10 0.00 42.74 4.61
82 83 1.076044 AAGCTTGTGCAAGGGGTGT 60.076 52.632 13.07 0.00 42.74 4.16
83 84 0.687427 AAGCTTGTGCAAGGGGTGTT 60.687 50.000 13.07 0.00 42.74 3.32
84 85 1.067916 GCTTGTGCAAGGGGTGTTG 59.932 57.895 13.07 0.00 38.80 3.33
85 86 1.741525 CTTGTGCAAGGGGTGTTGG 59.258 57.895 4.13 0.00 34.87 3.77
86 87 1.000993 TTGTGCAAGGGGTGTTGGT 59.999 52.632 0.00 0.00 0.00 3.67
87 88 0.616111 TTGTGCAAGGGGTGTTGGTT 60.616 50.000 0.00 0.00 0.00 3.67
88 89 1.040339 TGTGCAAGGGGTGTTGGTTC 61.040 55.000 0.00 0.00 0.00 3.62
89 90 1.040339 GTGCAAGGGGTGTTGGTTCA 61.040 55.000 0.00 0.00 0.00 3.18
90 91 0.105760 TGCAAGGGGTGTTGGTTCAT 60.106 50.000 0.00 0.00 0.00 2.57
91 92 0.318120 GCAAGGGGTGTTGGTTCATG 59.682 55.000 0.00 0.00 0.00 3.07
92 93 1.703411 CAAGGGGTGTTGGTTCATGT 58.297 50.000 0.00 0.00 0.00 3.21
93 94 2.870175 CAAGGGGTGTTGGTTCATGTA 58.130 47.619 0.00 0.00 0.00 2.29
94 95 2.556622 CAAGGGGTGTTGGTTCATGTAC 59.443 50.000 0.00 0.00 0.00 2.90
95 96 1.777878 AGGGGTGTTGGTTCATGTACA 59.222 47.619 0.00 0.00 0.00 2.90
96 97 2.378547 AGGGGTGTTGGTTCATGTACAT 59.621 45.455 1.41 1.41 0.00 2.29
97 98 3.589735 AGGGGTGTTGGTTCATGTACATA 59.410 43.478 8.32 0.00 0.00 2.29
98 99 3.692593 GGGGTGTTGGTTCATGTACATAC 59.307 47.826 8.32 4.04 0.00 2.39
99 100 4.328536 GGGTGTTGGTTCATGTACATACA 58.671 43.478 8.32 5.41 40.98 2.29
100 101 4.762765 GGGTGTTGGTTCATGTACATACAA 59.237 41.667 8.32 8.86 39.99 2.41
101 102 5.417580 GGGTGTTGGTTCATGTACATACAAT 59.582 40.000 8.32 0.00 39.99 2.71
102 103 6.600032 GGGTGTTGGTTCATGTACATACAATA 59.400 38.462 8.32 7.41 39.99 1.90
103 104 7.284489 GGGTGTTGGTTCATGTACATACAATAT 59.716 37.037 8.32 0.00 39.99 1.28
104 105 8.682710 GGTGTTGGTTCATGTACATACAATATT 58.317 33.333 8.32 0.00 39.99 1.28
105 106 9.716507 GTGTTGGTTCATGTACATACAATATTC 57.283 33.333 8.32 1.80 39.99 1.75
106 107 8.898761 TGTTGGTTCATGTACATACAATATTCC 58.101 33.333 8.32 3.20 39.99 3.01
107 108 9.120538 GTTGGTTCATGTACATACAATATTCCT 57.879 33.333 8.32 0.00 39.99 3.36
108 109 8.902540 TGGTTCATGTACATACAATATTCCTC 57.097 34.615 8.32 0.00 39.99 3.71
109 110 8.713971 TGGTTCATGTACATACAATATTCCTCT 58.286 33.333 8.32 0.00 39.99 3.69
110 111 9.209175 GGTTCATGTACATACAATATTCCTCTC 57.791 37.037 8.32 0.00 39.99 3.20
111 112 9.988815 GTTCATGTACATACAATATTCCTCTCT 57.011 33.333 8.32 0.00 39.99 3.10
116 117 9.213777 TGTACATACAATATTCCTCTCTTTCCT 57.786 33.333 0.00 0.00 32.40 3.36
117 118 9.699703 GTACATACAATATTCCTCTCTTTCCTC 57.300 37.037 0.00 0.00 0.00 3.71
118 119 8.324191 ACATACAATATTCCTCTCTTTCCTCA 57.676 34.615 0.00 0.00 0.00 3.86
119 120 8.943085 ACATACAATATTCCTCTCTTTCCTCAT 58.057 33.333 0.00 0.00 0.00 2.90
120 121 9.790344 CATACAATATTCCTCTCTTTCCTCATT 57.210 33.333 0.00 0.00 0.00 2.57
129 130 9.618890 TTCCTCTCTTTCCTCATTTATTGTATG 57.381 33.333 0.00 0.00 0.00 2.39
130 131 8.992349 TCCTCTCTTTCCTCATTTATTGTATGA 58.008 33.333 0.00 0.00 0.00 2.15
131 132 9.050601 CCTCTCTTTCCTCATTTATTGTATGAC 57.949 37.037 0.00 0.00 0.00 3.06
132 133 9.605275 CTCTCTTTCCTCATTTATTGTATGACA 57.395 33.333 0.00 0.00 0.00 3.58
133 134 9.383519 TCTCTTTCCTCATTTATTGTATGACAC 57.616 33.333 0.00 0.00 0.00 3.67
134 135 9.166173 CTCTTTCCTCATTTATTGTATGACACA 57.834 33.333 0.00 0.00 34.51 3.72
135 136 9.685276 TCTTTCCTCATTTATTGTATGACACAT 57.315 29.630 0.00 0.00 36.90 3.21
136 137 9.941664 CTTTCCTCATTTATTGTATGACACATC 57.058 33.333 0.00 0.00 36.90 3.06
137 138 9.460019 TTTCCTCATTTATTGTATGACACATCA 57.540 29.630 0.00 0.00 36.90 3.07
139 140 9.276590 TCCTCATTTATTGTATGACACATCATC 57.723 33.333 0.00 0.00 42.15 2.92
140 141 9.059260 CCTCATTTATTGTATGACACATCATCA 57.941 33.333 0.00 0.00 42.15 3.07
148 149 7.943079 TGTATGACACATCATCAAAAATCCT 57.057 32.000 0.00 0.00 42.15 3.24
149 150 9.460019 TTGTATGACACATCATCAAAAATCCTA 57.540 29.630 0.00 0.00 42.15 2.94
150 151 9.631257 TGTATGACACATCATCAAAAATCCTAT 57.369 29.630 0.00 0.00 42.15 2.57
151 152 9.888878 GTATGACACATCATCAAAAATCCTATG 57.111 33.333 0.00 0.00 42.15 2.23
152 153 7.943079 TGACACATCATCAAAAATCCTATGT 57.057 32.000 0.00 0.00 0.00 2.29
153 154 7.764331 TGACACATCATCAAAAATCCTATGTG 58.236 34.615 10.16 10.16 45.07 3.21
154 155 7.611079 TGACACATCATCAAAAATCCTATGTGA 59.389 33.333 16.81 0.00 43.28 3.58
155 156 7.765307 ACACATCATCAAAAATCCTATGTGAC 58.235 34.615 16.81 0.00 43.28 3.67
156 157 7.394077 ACACATCATCAAAAATCCTATGTGACA 59.606 33.333 16.81 0.00 43.28 3.58
157 158 8.245491 CACATCATCAAAAATCCTATGTGACAA 58.755 33.333 6.69 0.00 43.28 3.18
158 159 8.805175 ACATCATCAAAAATCCTATGTGACAAA 58.195 29.630 0.00 0.00 0.00 2.83
159 160 9.297586 CATCATCAAAAATCCTATGTGACAAAG 57.702 33.333 0.00 0.00 0.00 2.77
160 161 8.408043 TCATCAAAAATCCTATGTGACAAAGT 57.592 30.769 0.00 0.00 0.00 2.66
161 162 8.514594 TCATCAAAAATCCTATGTGACAAAGTC 58.485 33.333 0.00 0.00 0.00 3.01
162 163 8.517878 CATCAAAAATCCTATGTGACAAAGTCT 58.482 33.333 0.00 0.00 33.15 3.24
163 164 9.739276 ATCAAAAATCCTATGTGACAAAGTCTA 57.261 29.630 0.00 0.00 33.15 2.59
164 165 9.739276 TCAAAAATCCTATGTGACAAAGTCTAT 57.261 29.630 0.00 0.00 33.15 1.98
165 166 9.994432 CAAAAATCCTATGTGACAAAGTCTATC 57.006 33.333 0.00 0.00 33.15 2.08
166 167 9.739276 AAAAATCCTATGTGACAAAGTCTATCA 57.261 29.630 0.00 0.00 33.15 2.15
167 168 9.739276 AAAATCCTATGTGACAAAGTCTATCAA 57.261 29.630 0.00 0.00 33.15 2.57
168 169 8.723942 AATCCTATGTGACAAAGTCTATCAAC 57.276 34.615 0.00 0.00 33.15 3.18
169 170 7.239763 TCCTATGTGACAAAGTCTATCAACA 57.760 36.000 0.00 0.00 33.15 3.33
170 171 7.676004 TCCTATGTGACAAAGTCTATCAACAA 58.324 34.615 0.00 0.00 33.15 2.83
171 172 7.602644 TCCTATGTGACAAAGTCTATCAACAAC 59.397 37.037 0.00 0.00 33.15 3.32
172 173 7.604164 CCTATGTGACAAAGTCTATCAACAACT 59.396 37.037 0.00 0.00 33.15 3.16
173 174 9.639601 CTATGTGACAAAGTCTATCAACAACTA 57.360 33.333 0.00 0.00 33.15 2.24
175 176 8.902540 TGTGACAAAGTCTATCAACAACTATT 57.097 30.769 0.00 0.00 33.15 1.73
176 177 9.337396 TGTGACAAAGTCTATCAACAACTATTT 57.663 29.630 0.00 0.00 33.15 1.40
184 185 9.787435 AGTCTATCAACAACTATTTTACAACCA 57.213 29.630 0.00 0.00 0.00 3.67
190 191 9.743057 TCAACAACTATTTTACAACCATTGAAG 57.257 29.630 0.00 0.00 0.00 3.02
191 192 9.743057 CAACAACTATTTTACAACCATTGAAGA 57.257 29.630 0.00 0.00 0.00 2.87
193 194 9.912634 ACAACTATTTTACAACCATTGAAGATG 57.087 29.630 0.00 0.00 0.00 2.90
194 195 8.863049 CAACTATTTTACAACCATTGAAGATGC 58.137 33.333 0.00 0.00 0.00 3.91
195 196 7.547227 ACTATTTTACAACCATTGAAGATGCC 58.453 34.615 0.00 0.00 0.00 4.40
196 197 4.799564 TTTACAACCATTGAAGATGCCC 57.200 40.909 0.00 0.00 0.00 5.36
197 198 2.610438 ACAACCATTGAAGATGCCCT 57.390 45.000 0.00 0.00 0.00 5.19
198 199 2.893424 ACAACCATTGAAGATGCCCTT 58.107 42.857 0.00 0.00 37.93 3.95
199 200 4.046286 ACAACCATTGAAGATGCCCTTA 57.954 40.909 0.00 0.00 34.68 2.69
200 201 4.019174 ACAACCATTGAAGATGCCCTTAG 58.981 43.478 0.00 0.00 34.68 2.18
201 202 4.263905 ACAACCATTGAAGATGCCCTTAGA 60.264 41.667 0.00 0.00 34.68 2.10
202 203 3.891049 ACCATTGAAGATGCCCTTAGAC 58.109 45.455 0.00 0.00 34.68 2.59
203 204 3.525199 ACCATTGAAGATGCCCTTAGACT 59.475 43.478 0.00 0.00 34.68 3.24
204 205 4.721776 ACCATTGAAGATGCCCTTAGACTA 59.278 41.667 0.00 0.00 34.68 2.59
205 206 5.163258 ACCATTGAAGATGCCCTTAGACTAG 60.163 44.000 0.00 0.00 34.68 2.57
206 207 4.408182 TTGAAGATGCCCTTAGACTAGC 57.592 45.455 0.00 0.00 34.68 3.42
207 208 2.700897 TGAAGATGCCCTTAGACTAGCC 59.299 50.000 0.00 0.00 34.68 3.93
208 209 2.478872 AGATGCCCTTAGACTAGCCA 57.521 50.000 0.00 0.00 0.00 4.75
209 210 2.043227 AGATGCCCTTAGACTAGCCAC 58.957 52.381 0.00 0.00 0.00 5.01
210 211 1.762957 GATGCCCTTAGACTAGCCACA 59.237 52.381 0.00 0.00 0.00 4.17
211 212 1.651737 TGCCCTTAGACTAGCCACAA 58.348 50.000 0.00 0.00 0.00 3.33
212 213 2.196595 TGCCCTTAGACTAGCCACAAT 58.803 47.619 0.00 0.00 0.00 2.71
213 214 2.092968 TGCCCTTAGACTAGCCACAATG 60.093 50.000 0.00 0.00 0.00 2.82
214 215 2.746472 GCCCTTAGACTAGCCACAATGG 60.746 54.545 0.00 0.00 41.55 3.16
215 216 2.771943 CCCTTAGACTAGCCACAATGGA 59.228 50.000 0.00 0.00 40.96 3.41
216 217 3.392616 CCCTTAGACTAGCCACAATGGAT 59.607 47.826 0.00 0.00 40.96 3.41
217 218 4.593206 CCCTTAGACTAGCCACAATGGATA 59.407 45.833 0.00 0.00 40.96 2.59
227 228 6.247229 AGCCACAATGGATAGTAACATACA 57.753 37.500 0.00 0.00 40.96 2.29
228 229 6.055588 AGCCACAATGGATAGTAACATACAC 58.944 40.000 0.00 0.00 40.96 2.90
229 230 6.055588 GCCACAATGGATAGTAACATACACT 58.944 40.000 0.00 0.00 40.96 3.55
230 231 7.070696 AGCCACAATGGATAGTAACATACACTA 59.929 37.037 0.00 0.00 40.96 2.74
231 232 7.385205 GCCACAATGGATAGTAACATACACTAG 59.615 40.741 0.00 0.00 40.96 2.57
232 233 8.421784 CCACAATGGATAGTAACATACACTAGT 58.578 37.037 0.00 0.00 40.96 2.57
248 249 9.856488 CATACACTAGTAACATACACATATCCC 57.144 37.037 0.00 0.00 33.13 3.85
249 250 9.824216 ATACACTAGTAACATACACATATCCCT 57.176 33.333 0.00 0.00 33.13 4.20
251 252 9.298250 ACACTAGTAACATACACATATCCCTAG 57.702 37.037 0.00 0.00 0.00 3.02
252 253 9.516546 CACTAGTAACATACACATATCCCTAGA 57.483 37.037 0.00 0.00 0.00 2.43
253 254 9.517868 ACTAGTAACATACACATATCCCTAGAC 57.482 37.037 0.00 0.00 0.00 2.59
254 255 9.742144 CTAGTAACATACACATATCCCTAGACT 57.258 37.037 0.00 0.00 0.00 3.24
276 277 9.469097 AGACTATATTACTAGCTTCATAGTGGG 57.531 37.037 10.66 0.00 36.66 4.61
277 278 9.245481 GACTATATTACTAGCTTCATAGTGGGT 57.755 37.037 10.66 0.00 36.66 4.51
283 284 6.712179 ACTAGCTTCATAGTGGGTAGTAAC 57.288 41.667 0.00 0.00 40.80 2.50
284 285 6.192773 ACTAGCTTCATAGTGGGTAGTAACA 58.807 40.000 0.00 0.00 40.80 2.41
285 286 6.839657 ACTAGCTTCATAGTGGGTAGTAACAT 59.160 38.462 0.00 0.00 40.80 2.71
286 287 8.003044 ACTAGCTTCATAGTGGGTAGTAACATA 58.997 37.037 0.00 0.00 40.80 2.29
287 288 7.052142 AGCTTCATAGTGGGTAGTAACATAC 57.948 40.000 0.00 0.00 0.00 2.39
288 289 5.919141 GCTTCATAGTGGGTAGTAACATACG 59.081 44.000 0.00 0.00 0.00 3.06
289 290 6.460676 GCTTCATAGTGGGTAGTAACATACGT 60.461 42.308 0.00 0.00 0.00 3.57
290 291 6.381481 TCATAGTGGGTAGTAACATACGTG 57.619 41.667 0.00 0.00 0.00 4.49
291 292 5.887598 TCATAGTGGGTAGTAACATACGTGT 59.112 40.000 0.00 0.00 41.28 4.49
292 293 4.445452 AGTGGGTAGTAACATACGTGTG 57.555 45.455 11.09 11.09 38.92 3.82
293 294 3.194116 AGTGGGTAGTAACATACGTGTGG 59.806 47.826 17.05 0.00 38.92 4.17
294 295 3.056607 GTGGGTAGTAACATACGTGTGGT 60.057 47.826 17.05 12.96 38.92 4.16
295 296 4.157656 GTGGGTAGTAACATACGTGTGGTA 59.842 45.833 17.05 11.81 38.92 3.25
296 297 4.769488 TGGGTAGTAACATACGTGTGGTAA 59.231 41.667 11.94 0.00 38.92 2.85
297 298 5.102313 GGGTAGTAACATACGTGTGGTAAC 58.898 45.833 11.94 7.56 38.92 2.50
318 319 9.736023 GGTAACATCAAAGCTTCATTTATTAGG 57.264 33.333 0.00 0.00 0.00 2.69
340 341 9.725019 TTAGGTTATAGACTCATATTGCATTGG 57.275 33.333 0.00 0.00 0.00 3.16
341 342 7.977818 AGGTTATAGACTCATATTGCATTGGA 58.022 34.615 0.00 0.00 0.00 3.53
342 343 8.439971 AGGTTATAGACTCATATTGCATTGGAA 58.560 33.333 0.00 0.00 0.00 3.53
343 344 8.507249 GGTTATAGACTCATATTGCATTGGAAC 58.493 37.037 0.00 0.00 0.00 3.62
344 345 9.056005 GTTATAGACTCATATTGCATTGGAACA 57.944 33.333 0.00 0.00 0.00 3.18
345 346 9.797642 TTATAGACTCATATTGCATTGGAACAT 57.202 29.630 0.00 0.00 39.30 2.71
346 347 6.387041 AGACTCATATTGCATTGGAACATG 57.613 37.500 3.03 3.03 39.30 3.21
347 348 5.889853 AGACTCATATTGCATTGGAACATGT 59.110 36.000 8.71 0.00 39.30 3.21
348 349 5.898174 ACTCATATTGCATTGGAACATGTG 58.102 37.500 8.71 8.83 39.30 3.21
349 350 5.653330 ACTCATATTGCATTGGAACATGTGA 59.347 36.000 15.21 5.01 39.30 3.58
350 351 6.322969 ACTCATATTGCATTGGAACATGTGAT 59.677 34.615 15.21 1.38 39.30 3.06
351 352 6.508777 TCATATTGCATTGGAACATGTGATG 58.491 36.000 8.71 3.38 39.30 3.07
366 367 6.936279 ACATGTGATGTTACAGTAACTAGCT 58.064 36.000 21.56 6.57 41.63 3.32
367 368 8.063200 ACATGTGATGTTACAGTAACTAGCTA 57.937 34.615 21.56 4.25 41.63 3.32
368 369 8.528643 ACATGTGATGTTACAGTAACTAGCTAA 58.471 33.333 21.56 3.59 41.63 3.09
369 370 9.025020 CATGTGATGTTACAGTAACTAGCTAAG 57.975 37.037 21.56 6.36 39.38 2.18
370 371 8.118976 TGTGATGTTACAGTAACTAGCTAAGT 57.881 34.615 21.56 0.00 41.49 2.24
402 403 7.817418 ACTATCTCTCTCCTCATTAACTCAC 57.183 40.000 0.00 0.00 0.00 3.51
403 404 7.582719 ACTATCTCTCTCCTCATTAACTCACT 58.417 38.462 0.00 0.00 0.00 3.41
404 405 6.713762 ATCTCTCTCCTCATTAACTCACTG 57.286 41.667 0.00 0.00 0.00 3.66
405 406 4.400884 TCTCTCTCCTCATTAACTCACTGC 59.599 45.833 0.00 0.00 0.00 4.40
406 407 3.449018 TCTCTCCTCATTAACTCACTGCC 59.551 47.826 0.00 0.00 0.00 4.85
407 408 3.173151 TCTCCTCATTAACTCACTGCCA 58.827 45.455 0.00 0.00 0.00 4.92
408 409 3.055819 TCTCCTCATTAACTCACTGCCAC 60.056 47.826 0.00 0.00 0.00 5.01
409 410 2.637382 TCCTCATTAACTCACTGCCACA 59.363 45.455 0.00 0.00 0.00 4.17
410 411 3.264193 TCCTCATTAACTCACTGCCACAT 59.736 43.478 0.00 0.00 0.00 3.21
411 412 4.469586 TCCTCATTAACTCACTGCCACATA 59.530 41.667 0.00 0.00 0.00 2.29
412 413 5.045942 TCCTCATTAACTCACTGCCACATAA 60.046 40.000 0.00 0.00 0.00 1.90
413 414 5.295292 CCTCATTAACTCACTGCCACATAAG 59.705 44.000 0.00 0.00 0.00 1.73
414 415 4.635765 TCATTAACTCACTGCCACATAAGC 59.364 41.667 0.00 0.00 0.00 3.09
415 416 2.566833 AACTCACTGCCACATAAGCA 57.433 45.000 0.00 0.00 38.82 3.91
416 417 2.566833 ACTCACTGCCACATAAGCAA 57.433 45.000 0.00 0.00 40.35 3.91
417 418 2.862541 ACTCACTGCCACATAAGCAAA 58.137 42.857 0.00 0.00 40.35 3.68
418 419 3.424703 ACTCACTGCCACATAAGCAAAT 58.575 40.909 0.00 0.00 40.35 2.32
419 420 3.828451 ACTCACTGCCACATAAGCAAATT 59.172 39.130 0.00 0.00 40.35 1.82
420 421 4.281688 ACTCACTGCCACATAAGCAAATTT 59.718 37.500 0.00 0.00 40.35 1.82
421 422 4.558178 TCACTGCCACATAAGCAAATTTG 58.442 39.130 14.03 14.03 40.35 2.32
445 446 2.924290 GAGTTGGACTCGATGTTACTGC 59.076 50.000 0.00 0.00 35.28 4.40
446 447 2.563179 AGTTGGACTCGATGTTACTGCT 59.437 45.455 0.00 0.00 0.00 4.24
447 448 2.654749 TGGACTCGATGTTACTGCTG 57.345 50.000 0.00 0.00 0.00 4.41
448 449 2.167662 TGGACTCGATGTTACTGCTGA 58.832 47.619 0.00 0.00 0.00 4.26
449 450 2.560981 TGGACTCGATGTTACTGCTGAA 59.439 45.455 0.00 0.00 0.00 3.02
450 451 3.182967 GGACTCGATGTTACTGCTGAAG 58.817 50.000 0.00 0.00 0.00 3.02
451 452 3.367498 GGACTCGATGTTACTGCTGAAGT 60.367 47.826 0.00 0.00 43.40 3.01
452 453 4.238514 GACTCGATGTTACTGCTGAAGTT 58.761 43.478 0.00 0.00 40.56 2.66
453 454 5.386958 ACTCGATGTTACTGCTGAAGTTA 57.613 39.130 0.00 0.00 40.56 2.24
454 455 5.162075 ACTCGATGTTACTGCTGAAGTTAC 58.838 41.667 0.00 0.00 40.56 2.50
455 456 5.047943 ACTCGATGTTACTGCTGAAGTTACT 60.048 40.000 6.50 0.00 38.87 2.24
456 457 5.399858 TCGATGTTACTGCTGAAGTTACTC 58.600 41.667 6.50 1.79 38.87 2.59
457 458 4.563184 CGATGTTACTGCTGAAGTTACTCC 59.437 45.833 6.50 0.00 38.87 3.85
458 459 4.267349 TGTTACTGCTGAAGTTACTCCC 57.733 45.455 6.50 0.00 38.87 4.30
459 460 3.644265 TGTTACTGCTGAAGTTACTCCCA 59.356 43.478 6.50 0.00 38.87 4.37
460 461 2.841442 ACTGCTGAAGTTACTCCCAC 57.159 50.000 0.00 0.00 34.57 4.61
461 462 2.330216 ACTGCTGAAGTTACTCCCACT 58.670 47.619 0.00 0.00 34.57 4.00
462 463 2.037772 ACTGCTGAAGTTACTCCCACTG 59.962 50.000 0.00 0.00 34.57 3.66
463 464 2.037772 CTGCTGAAGTTACTCCCACTGT 59.962 50.000 0.00 0.00 0.00 3.55
464 465 2.224281 TGCTGAAGTTACTCCCACTGTG 60.224 50.000 0.00 0.00 0.00 3.66
465 466 2.872038 GCTGAAGTTACTCCCACTGTGG 60.872 54.545 20.01 20.01 37.25 4.17
466 467 1.071699 TGAAGTTACTCCCACTGTGGC 59.928 52.381 21.47 6.54 35.79 5.01
467 468 1.348036 GAAGTTACTCCCACTGTGGCT 59.652 52.381 21.47 8.83 35.79 4.75
468 469 2.320681 AGTTACTCCCACTGTGGCTA 57.679 50.000 21.47 10.31 35.79 3.93
469 470 2.180276 AGTTACTCCCACTGTGGCTAG 58.820 52.381 21.47 20.51 35.79 3.42
470 471 1.900486 GTTACTCCCACTGTGGCTAGT 59.100 52.381 26.22 26.22 35.79 2.57
471 472 1.848652 TACTCCCACTGTGGCTAGTC 58.151 55.000 26.56 0.00 35.79 2.59
472 473 0.115349 ACTCCCACTGTGGCTAGTCT 59.885 55.000 21.47 3.44 35.79 3.24
473 474 1.270907 CTCCCACTGTGGCTAGTCTT 58.729 55.000 21.47 0.00 35.79 3.01
474 475 2.225293 ACTCCCACTGTGGCTAGTCTTA 60.225 50.000 21.47 0.00 35.79 2.10
475 476 3.034635 CTCCCACTGTGGCTAGTCTTAT 58.965 50.000 21.47 0.00 35.79 1.73
476 477 2.766263 TCCCACTGTGGCTAGTCTTATG 59.234 50.000 21.47 3.81 35.79 1.90
477 478 2.501723 CCCACTGTGGCTAGTCTTATGT 59.498 50.000 21.47 0.00 35.79 2.29
478 479 3.055094 CCCACTGTGGCTAGTCTTATGTT 60.055 47.826 21.47 0.00 35.79 2.71
479 480 4.161565 CCCACTGTGGCTAGTCTTATGTTA 59.838 45.833 21.47 0.00 35.79 2.41
480 481 5.109903 CCACTGTGGCTAGTCTTATGTTAC 58.890 45.833 14.87 0.00 0.00 2.50
481 482 5.109903 CACTGTGGCTAGTCTTATGTTACC 58.890 45.833 0.00 0.00 0.00 2.85
482 483 4.161754 ACTGTGGCTAGTCTTATGTTACCC 59.838 45.833 0.00 0.00 0.00 3.69
483 484 3.453353 TGTGGCTAGTCTTATGTTACCCC 59.547 47.826 0.00 0.00 0.00 4.95
484 485 3.043418 TGGCTAGTCTTATGTTACCCCC 58.957 50.000 0.00 0.00 0.00 5.40
485 486 3.043418 GGCTAGTCTTATGTTACCCCCA 58.957 50.000 0.00 0.00 0.00 4.96
486 487 3.181457 GGCTAGTCTTATGTTACCCCCAC 60.181 52.174 0.00 0.00 0.00 4.61
487 488 3.710165 GCTAGTCTTATGTTACCCCCACT 59.290 47.826 0.00 0.00 0.00 4.00
488 489 4.897670 GCTAGTCTTATGTTACCCCCACTA 59.102 45.833 0.00 0.00 0.00 2.74
489 490 5.543020 GCTAGTCTTATGTTACCCCCACTAT 59.457 44.000 0.00 0.00 0.00 2.12
490 491 5.888982 AGTCTTATGTTACCCCCACTATG 57.111 43.478 0.00 0.00 0.00 2.23
491 492 4.658901 AGTCTTATGTTACCCCCACTATGG 59.341 45.833 0.00 0.00 37.25 2.74
492 493 3.393278 TCTTATGTTACCCCCACTATGGC 59.607 47.826 0.00 0.00 35.79 4.40
493 494 1.907240 ATGTTACCCCCACTATGGCT 58.093 50.000 0.00 0.00 35.79 4.75
494 495 2.572229 TGTTACCCCCACTATGGCTA 57.428 50.000 0.00 0.00 35.79 3.93
498 499 1.462238 CCCCCACTATGGCTAGCCT 60.462 63.158 33.07 20.80 35.79 4.58
510 511 1.705873 GCTAGCCTTAGCCACCTAGA 58.294 55.000 2.29 0.00 45.34 2.43
528 530 4.593634 CCTAGATTAGGGGAGGAAAACGAT 59.406 45.833 0.00 0.00 42.42 3.73
529 531 5.071923 CCTAGATTAGGGGAGGAAAACGATT 59.928 44.000 0.00 0.00 42.42 3.34
657 659 5.880887 ACACTCTATACATCTGAGAACGACA 59.119 40.000 0.00 0.00 0.00 4.35
658 660 6.037720 ACACTCTATACATCTGAGAACGACAG 59.962 42.308 0.00 0.00 36.80 3.51
660 662 5.126779 TCTATACATCTGAGAACGACAGCT 58.873 41.667 0.00 0.00 35.61 4.24
805 813 4.461405 CGAGCAGAAGAAATTTCACACAG 58.539 43.478 19.99 8.62 0.00 3.66
824 832 3.945921 ACAGCACATCTCGTAAGCTACTA 59.054 43.478 0.00 0.00 33.59 1.82
875 883 1.670380 GCCCATTCGCTAGCTAGCTAC 60.670 57.143 36.02 14.90 46.85 3.58
946 957 3.255149 AGTCGGTTAAGTACTGTGACAGG 59.745 47.826 17.92 0.00 35.51 4.00
960 971 1.203187 TGACAGGGAGCTAGGTTCAGT 60.203 52.381 1.94 0.00 0.00 3.41
1155 1169 5.292101 ACGTGCATTTTCAGCTAGATCTTAC 59.708 40.000 0.00 0.00 0.00 2.34
1156 1170 5.521735 CGTGCATTTTCAGCTAGATCTTACT 59.478 40.000 0.00 0.00 0.00 2.24
1157 1171 6.697455 CGTGCATTTTCAGCTAGATCTTACTA 59.303 38.462 0.00 0.00 0.00 1.82
1177 1194 1.915614 CTCACCACCGTGCATGAAGC 61.916 60.000 7.72 0.00 45.96 3.86
1211 1237 4.440068 GCTAACACGTTACGTTCTTTGAC 58.560 43.478 7.98 0.00 38.32 3.18
1219 1245 3.127864 CGTTCTTTGACGTGTGTGC 57.872 52.632 0.00 0.00 38.19 4.57
1336 1373 2.697654 GGCATCATCAGCATCTACTCC 58.302 52.381 0.00 0.00 0.00 3.85
1945 1988 1.208052 GTGTGGAAGGAGCTGCTGATA 59.792 52.381 9.14 0.00 0.00 2.15
2131 2174 2.346803 GCGTGCAAGACCTTCTTCATA 58.653 47.619 2.99 0.00 33.78 2.15
2146 2189 2.051256 ATACCGATCGCGACGCTG 60.051 61.111 12.93 11.58 40.82 5.18
2656 2708 2.659610 GAGCGCAAGAGGTCCACT 59.340 61.111 11.47 0.00 43.02 4.00
2689 2741 4.177026 CTCAGCAGTAACAGCGAGTAATT 58.823 43.478 0.00 0.00 37.01 1.40
2742 2796 2.826287 TTGTGTGTGGTGTGGCCG 60.826 61.111 0.00 0.00 41.21 6.13
2745 2799 4.555709 TGTGTGGTGTGGCCGGTC 62.556 66.667 0.00 0.00 41.21 4.79
2790 2847 9.661886 AATCTCTAGATTCTGGACACGTTGGTG 62.662 44.444 0.00 0.00 44.04 4.17
2888 2948 6.279227 GTGATGAATCCACGTAGAAAGATG 57.721 41.667 0.00 0.00 0.00 2.90
3053 3122 1.769733 GAGTCATCGCTGATCTCTGC 58.230 55.000 9.92 0.00 37.44 4.26
3186 3255 2.328099 CCTCCCTTGCTTGACACGC 61.328 63.158 0.00 0.00 0.00 5.34
3190 3259 1.956170 CCTTGCTTGACACGCGTCT 60.956 57.895 9.86 0.00 43.06 4.18
3216 3285 0.613292 ACCACGCACATCTCTCTCCT 60.613 55.000 0.00 0.00 0.00 3.69
3256 3358 2.068519 CAGTGCAGCGAACAATGACTA 58.931 47.619 0.00 0.00 35.20 2.59
3265 3367 3.561503 CGAACAATGACTACACGAGTGA 58.438 45.455 10.50 0.00 39.06 3.41
3317 3421 0.875040 CAACATGCGCCTTGTTGCAA 60.875 50.000 28.86 0.00 45.10 4.08
3492 3601 6.970484 AGAGAATAGAACGTTTTGCAACAAT 58.030 32.000 0.46 0.00 32.54 2.71
3494 3603 6.734137 AGAATAGAACGTTTTGCAACAATGA 58.266 32.000 0.46 0.00 32.54 2.57
3553 3662 3.377485 ACTGATCACGACTATAGTTGCGT 59.623 43.478 18.52 15.35 37.48 5.24
3628 3738 0.469917 CCGCCCAAGACCTACATCAT 59.530 55.000 0.00 0.00 0.00 2.45
3635 3745 3.369471 CCAAGACCTACATCATTGGACGT 60.369 47.826 0.00 0.00 42.46 4.34
3669 3779 5.336929 CCATTTTTCTGCAACATCATCTGGA 60.337 40.000 0.00 0.00 0.00 3.86
3676 3786 2.223735 GCAACATCATCTGGATTGCAGG 60.224 50.000 5.27 0.00 38.86 4.85
3677 3787 3.284617 CAACATCATCTGGATTGCAGGA 58.715 45.455 5.27 0.00 32.57 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.764363 CACATCTTATTAGGCAAACTAGATACA 57.236 33.333 0.00 0.00 32.16 2.29
3 4 9.982651 TCACATCTTATTAGGCAAACTAGATAC 57.017 33.333 0.00 0.00 32.16 2.24
5 6 8.928448 TCTCACATCTTATTAGGCAAACTAGAT 58.072 33.333 0.00 0.00 32.16 1.98
6 7 8.306313 TCTCACATCTTATTAGGCAAACTAGA 57.694 34.615 0.00 0.00 32.16 2.43
36 37 9.624373 AATGTAGAATGAGAGAGCACATTATTT 57.376 29.630 0.00 0.00 35.81 1.40
37 38 9.053840 CAATGTAGAATGAGAGAGCACATTATT 57.946 33.333 0.00 0.00 35.81 1.40
38 39 8.427276 TCAATGTAGAATGAGAGAGCACATTAT 58.573 33.333 0.00 0.00 35.81 1.28
39 40 7.785033 TCAATGTAGAATGAGAGAGCACATTA 58.215 34.615 0.00 0.00 35.81 1.90
40 41 6.647229 TCAATGTAGAATGAGAGAGCACATT 58.353 36.000 0.00 0.00 37.90 2.71
41 42 6.231258 TCAATGTAGAATGAGAGAGCACAT 57.769 37.500 0.00 0.00 0.00 3.21
42 43 5.665916 TCAATGTAGAATGAGAGAGCACA 57.334 39.130 0.00 0.00 0.00 4.57
43 44 5.006552 GCTTCAATGTAGAATGAGAGAGCAC 59.993 44.000 0.00 0.00 30.81 4.40
44 45 5.105023 AGCTTCAATGTAGAATGAGAGAGCA 60.105 40.000 3.71 0.00 32.14 4.26
45 46 5.358922 AGCTTCAATGTAGAATGAGAGAGC 58.641 41.667 0.00 0.00 30.63 4.09
46 47 6.817641 ACAAGCTTCAATGTAGAATGAGAGAG 59.182 38.462 0.00 0.00 0.00 3.20
47 48 6.592994 CACAAGCTTCAATGTAGAATGAGAGA 59.407 38.462 0.00 0.00 0.00 3.10
48 49 6.675002 GCACAAGCTTCAATGTAGAATGAGAG 60.675 42.308 0.00 0.00 37.91 3.20
49 50 5.122869 GCACAAGCTTCAATGTAGAATGAGA 59.877 40.000 0.00 0.00 37.91 3.27
50 51 5.106436 TGCACAAGCTTCAATGTAGAATGAG 60.106 40.000 0.00 0.00 42.74 2.90
51 52 4.761227 TGCACAAGCTTCAATGTAGAATGA 59.239 37.500 0.00 0.00 42.74 2.57
52 53 5.050644 TGCACAAGCTTCAATGTAGAATG 57.949 39.130 0.00 0.00 42.74 2.67
53 54 5.336213 CCTTGCACAAGCTTCAATGTAGAAT 60.336 40.000 0.00 0.00 42.74 2.40
54 55 4.022935 CCTTGCACAAGCTTCAATGTAGAA 60.023 41.667 0.00 0.00 42.74 2.10
55 56 3.503363 CCTTGCACAAGCTTCAATGTAGA 59.497 43.478 0.00 0.00 42.74 2.59
56 57 3.366679 CCCTTGCACAAGCTTCAATGTAG 60.367 47.826 0.00 0.00 42.74 2.74
57 58 2.557924 CCCTTGCACAAGCTTCAATGTA 59.442 45.455 0.00 0.00 42.74 2.29
58 59 1.342174 CCCTTGCACAAGCTTCAATGT 59.658 47.619 0.00 0.00 42.74 2.71
59 60 1.337447 CCCCTTGCACAAGCTTCAATG 60.337 52.381 0.00 0.00 42.74 2.82
60 61 0.971386 CCCCTTGCACAAGCTTCAAT 59.029 50.000 0.00 0.00 42.74 2.57
61 62 0.396974 ACCCCTTGCACAAGCTTCAA 60.397 50.000 0.00 0.00 42.74 2.69
62 63 1.108727 CACCCCTTGCACAAGCTTCA 61.109 55.000 0.00 0.00 42.74 3.02
63 64 1.109323 ACACCCCTTGCACAAGCTTC 61.109 55.000 0.00 0.00 42.74 3.86
64 65 0.687427 AACACCCCTTGCACAAGCTT 60.687 50.000 4.82 0.00 42.74 3.74
65 66 1.076044 AACACCCCTTGCACAAGCT 60.076 52.632 4.82 0.00 42.74 3.74
66 67 1.067916 CAACACCCCTTGCACAAGC 59.932 57.895 4.82 0.00 42.57 4.01
67 68 1.042559 ACCAACACCCCTTGCACAAG 61.043 55.000 3.32 3.32 38.14 3.16
68 69 0.616111 AACCAACACCCCTTGCACAA 60.616 50.000 0.00 0.00 0.00 3.33
69 70 1.000993 AACCAACACCCCTTGCACA 59.999 52.632 0.00 0.00 0.00 4.57
70 71 1.040339 TGAACCAACACCCCTTGCAC 61.040 55.000 0.00 0.00 0.00 4.57
71 72 0.105760 ATGAACCAACACCCCTTGCA 60.106 50.000 0.00 0.00 0.00 4.08
72 73 0.318120 CATGAACCAACACCCCTTGC 59.682 55.000 0.00 0.00 0.00 4.01
73 74 1.703411 ACATGAACCAACACCCCTTG 58.297 50.000 0.00 0.00 0.00 3.61
74 75 2.175931 TGTACATGAACCAACACCCCTT 59.824 45.455 0.00 0.00 0.00 3.95
75 76 1.777878 TGTACATGAACCAACACCCCT 59.222 47.619 0.00 0.00 0.00 4.79
76 77 2.279935 TGTACATGAACCAACACCCC 57.720 50.000 0.00 0.00 0.00 4.95
77 78 4.328536 TGTATGTACATGAACCAACACCC 58.671 43.478 18.81 0.00 0.00 4.61
78 79 5.950758 TTGTATGTACATGAACCAACACC 57.049 39.130 18.81 0.00 35.89 4.16
79 80 9.716507 GAATATTGTATGTACATGAACCAACAC 57.283 33.333 18.81 6.41 35.89 3.32
80 81 8.898761 GGAATATTGTATGTACATGAACCAACA 58.101 33.333 18.81 10.42 35.89 3.33
81 82 9.120538 AGGAATATTGTATGTACATGAACCAAC 57.879 33.333 18.81 7.85 35.89 3.77
82 83 9.337396 GAGGAATATTGTATGTACATGAACCAA 57.663 33.333 18.81 14.52 35.89 3.67
83 84 8.713971 AGAGGAATATTGTATGTACATGAACCA 58.286 33.333 18.81 6.89 35.89 3.67
84 85 9.209175 GAGAGGAATATTGTATGTACATGAACC 57.791 37.037 18.81 8.23 35.89 3.62
85 86 9.988815 AGAGAGGAATATTGTATGTACATGAAC 57.011 33.333 18.81 10.03 35.89 3.18
90 91 9.213777 AGGAAAGAGAGGAATATTGTATGTACA 57.786 33.333 0.00 0.00 0.00 2.90
91 92 9.699703 GAGGAAAGAGAGGAATATTGTATGTAC 57.300 37.037 0.00 0.00 0.00 2.90
92 93 9.434275 TGAGGAAAGAGAGGAATATTGTATGTA 57.566 33.333 0.00 0.00 0.00 2.29
93 94 8.324191 TGAGGAAAGAGAGGAATATTGTATGT 57.676 34.615 0.00 0.00 0.00 2.29
94 95 9.790344 AATGAGGAAAGAGAGGAATATTGTATG 57.210 33.333 0.00 0.00 0.00 2.39
103 104 9.618890 CATACAATAAATGAGGAAAGAGAGGAA 57.381 33.333 0.00 0.00 0.00 3.36
104 105 8.992349 TCATACAATAAATGAGGAAAGAGAGGA 58.008 33.333 0.00 0.00 0.00 3.71
105 106 9.050601 GTCATACAATAAATGAGGAAAGAGAGG 57.949 37.037 0.00 0.00 34.12 3.69
106 107 9.605275 TGTCATACAATAAATGAGGAAAGAGAG 57.395 33.333 0.00 0.00 34.12 3.20
107 108 9.383519 GTGTCATACAATAAATGAGGAAAGAGA 57.616 33.333 0.00 0.00 34.12 3.10
108 109 9.166173 TGTGTCATACAATAAATGAGGAAAGAG 57.834 33.333 0.00 0.00 36.06 2.85
109 110 9.685276 ATGTGTCATACAATAAATGAGGAAAGA 57.315 29.630 0.00 0.00 43.77 2.52
110 111 9.941664 GATGTGTCATACAATAAATGAGGAAAG 57.058 33.333 0.00 0.00 43.77 2.62
111 112 9.460019 TGATGTGTCATACAATAAATGAGGAAA 57.540 29.630 0.00 0.00 43.77 3.13
112 113 9.631257 ATGATGTGTCATACAATAAATGAGGAA 57.369 29.630 0.00 0.00 43.18 3.36
113 114 9.276590 GATGATGTGTCATACAATAAATGAGGA 57.723 33.333 0.00 0.00 44.96 3.71
114 115 9.059260 TGATGATGTGTCATACAATAAATGAGG 57.941 33.333 0.00 0.00 44.96 3.86
122 123 8.974238 AGGATTTTTGATGATGTGTCATACAAT 58.026 29.630 0.00 0.00 44.96 2.71
123 124 8.352137 AGGATTTTTGATGATGTGTCATACAA 57.648 30.769 0.00 0.00 44.96 2.41
124 125 7.943079 AGGATTTTTGATGATGTGTCATACA 57.057 32.000 0.00 0.00 44.96 2.29
125 126 9.888878 CATAGGATTTTTGATGATGTGTCATAC 57.111 33.333 0.00 0.00 44.96 2.39
126 127 9.631257 ACATAGGATTTTTGATGATGTGTCATA 57.369 29.630 0.00 0.00 44.96 2.15
128 129 7.611079 TCACATAGGATTTTTGATGATGTGTCA 59.389 33.333 10.81 0.00 42.02 3.58
129 130 7.912250 GTCACATAGGATTTTTGATGATGTGTC 59.088 37.037 10.81 3.56 42.02 3.67
130 131 7.394077 TGTCACATAGGATTTTTGATGATGTGT 59.606 33.333 10.81 0.00 42.02 3.72
131 132 7.764331 TGTCACATAGGATTTTTGATGATGTG 58.236 34.615 5.88 5.88 42.48 3.21
132 133 7.943079 TGTCACATAGGATTTTTGATGATGT 57.057 32.000 0.00 0.00 0.00 3.06
133 134 9.297586 CTTTGTCACATAGGATTTTTGATGATG 57.702 33.333 0.00 0.00 0.00 3.07
134 135 9.028284 ACTTTGTCACATAGGATTTTTGATGAT 57.972 29.630 0.00 0.00 0.00 2.45
135 136 8.408043 ACTTTGTCACATAGGATTTTTGATGA 57.592 30.769 0.00 0.00 0.00 2.92
136 137 8.517878 AGACTTTGTCACATAGGATTTTTGATG 58.482 33.333 0.00 0.00 34.60 3.07
137 138 8.641498 AGACTTTGTCACATAGGATTTTTGAT 57.359 30.769 0.00 0.00 34.60 2.57
138 139 9.739276 ATAGACTTTGTCACATAGGATTTTTGA 57.261 29.630 0.00 0.00 34.60 2.69
139 140 9.994432 GATAGACTTTGTCACATAGGATTTTTG 57.006 33.333 0.00 0.00 34.60 2.44
140 141 9.739276 TGATAGACTTTGTCACATAGGATTTTT 57.261 29.630 0.00 0.00 34.60 1.94
141 142 9.739276 TTGATAGACTTTGTCACATAGGATTTT 57.261 29.630 0.00 0.00 34.60 1.82
142 143 9.167311 GTTGATAGACTTTGTCACATAGGATTT 57.833 33.333 0.00 0.00 34.60 2.17
143 144 8.321353 TGTTGATAGACTTTGTCACATAGGATT 58.679 33.333 0.00 0.00 34.60 3.01
144 145 7.851228 TGTTGATAGACTTTGTCACATAGGAT 58.149 34.615 0.00 0.00 34.60 3.24
145 146 7.239763 TGTTGATAGACTTTGTCACATAGGA 57.760 36.000 0.00 0.00 34.60 2.94
146 147 7.604164 AGTTGTTGATAGACTTTGTCACATAGG 59.396 37.037 0.00 0.00 34.60 2.57
147 148 8.539770 AGTTGTTGATAGACTTTGTCACATAG 57.460 34.615 0.00 0.00 34.60 2.23
149 150 9.507329 AATAGTTGTTGATAGACTTTGTCACAT 57.493 29.630 0.46 0.00 34.60 3.21
150 151 8.902540 AATAGTTGTTGATAGACTTTGTCACA 57.097 30.769 0.46 0.00 34.60 3.58
158 159 9.787435 TGGTTGTAAAATAGTTGTTGATAGACT 57.213 29.630 0.00 0.00 0.00 3.24
164 165 9.743057 CTTCAATGGTTGTAAAATAGTTGTTGA 57.257 29.630 0.00 0.00 0.00 3.18
165 166 9.743057 TCTTCAATGGTTGTAAAATAGTTGTTG 57.257 29.630 0.00 0.00 0.00 3.33
167 168 9.912634 CATCTTCAATGGTTGTAAAATAGTTGT 57.087 29.630 0.00 0.00 0.00 3.32
168 169 8.863049 GCATCTTCAATGGTTGTAAAATAGTTG 58.137 33.333 0.00 0.00 0.00 3.16
169 170 8.034804 GGCATCTTCAATGGTTGTAAAATAGTT 58.965 33.333 0.00 0.00 0.00 2.24
170 171 7.363793 GGGCATCTTCAATGGTTGTAAAATAGT 60.364 37.037 0.00 0.00 0.00 2.12
171 172 6.980397 GGGCATCTTCAATGGTTGTAAAATAG 59.020 38.462 0.00 0.00 0.00 1.73
172 173 6.667414 AGGGCATCTTCAATGGTTGTAAAATA 59.333 34.615 0.00 0.00 0.00 1.40
173 174 5.484998 AGGGCATCTTCAATGGTTGTAAAAT 59.515 36.000 0.00 0.00 0.00 1.82
174 175 4.837860 AGGGCATCTTCAATGGTTGTAAAA 59.162 37.500 0.00 0.00 0.00 1.52
175 176 4.415596 AGGGCATCTTCAATGGTTGTAAA 58.584 39.130 0.00 0.00 0.00 2.01
176 177 4.046286 AGGGCATCTTCAATGGTTGTAA 57.954 40.909 0.00 0.00 0.00 2.41
177 178 3.737559 AGGGCATCTTCAATGGTTGTA 57.262 42.857 0.00 0.00 0.00 2.41
178 179 2.610438 AGGGCATCTTCAATGGTTGT 57.390 45.000 0.00 0.00 0.00 3.32
179 180 4.096984 GTCTAAGGGCATCTTCAATGGTTG 59.903 45.833 0.00 0.00 36.93 3.77
180 181 4.018050 AGTCTAAGGGCATCTTCAATGGTT 60.018 41.667 0.00 0.00 36.93 3.67
181 182 3.525199 AGTCTAAGGGCATCTTCAATGGT 59.475 43.478 0.00 0.00 36.93 3.55
182 183 4.162040 AGTCTAAGGGCATCTTCAATGG 57.838 45.455 0.00 0.00 36.93 3.16
183 184 4.754114 GCTAGTCTAAGGGCATCTTCAATG 59.246 45.833 0.00 0.00 36.93 2.82
184 185 4.202409 GGCTAGTCTAAGGGCATCTTCAAT 60.202 45.833 0.00 0.00 36.93 2.57
185 186 3.134804 GGCTAGTCTAAGGGCATCTTCAA 59.865 47.826 0.00 0.00 36.93 2.69
186 187 2.700897 GGCTAGTCTAAGGGCATCTTCA 59.299 50.000 0.00 0.00 36.93 3.02
187 188 2.700897 TGGCTAGTCTAAGGGCATCTTC 59.299 50.000 0.00 0.00 36.93 2.87
188 189 2.436173 GTGGCTAGTCTAAGGGCATCTT 59.564 50.000 0.00 0.00 37.81 2.40
189 190 2.043227 GTGGCTAGTCTAAGGGCATCT 58.957 52.381 0.00 0.00 37.81 2.90
190 191 1.762957 TGTGGCTAGTCTAAGGGCATC 59.237 52.381 0.00 0.00 37.81 3.91
191 192 1.879575 TGTGGCTAGTCTAAGGGCAT 58.120 50.000 0.00 0.00 37.81 4.40
192 193 1.651737 TTGTGGCTAGTCTAAGGGCA 58.348 50.000 0.00 0.00 0.00 5.36
193 194 2.565841 CATTGTGGCTAGTCTAAGGGC 58.434 52.381 0.00 0.00 0.00 5.19
194 195 2.771943 TCCATTGTGGCTAGTCTAAGGG 59.228 50.000 8.63 8.63 37.47 3.95
195 196 4.696479 ATCCATTGTGGCTAGTCTAAGG 57.304 45.455 0.00 0.00 37.47 2.69
196 197 6.412362 ACTATCCATTGTGGCTAGTCTAAG 57.588 41.667 6.67 0.00 43.73 2.18
197 198 7.343574 TGTTACTATCCATTGTGGCTAGTCTAA 59.656 37.037 13.92 4.20 43.73 2.10
198 199 6.837048 TGTTACTATCCATTGTGGCTAGTCTA 59.163 38.462 13.92 4.09 43.73 2.59
199 200 5.661312 TGTTACTATCCATTGTGGCTAGTCT 59.339 40.000 13.92 0.00 43.73 3.24
200 201 5.914033 TGTTACTATCCATTGTGGCTAGTC 58.086 41.667 13.92 4.48 43.73 2.59
202 203 7.385205 GTGTATGTTACTATCCATTGTGGCTAG 59.615 40.741 5.55 5.55 40.94 3.42
203 204 7.070696 AGTGTATGTTACTATCCATTGTGGCTA 59.929 37.037 0.00 0.00 37.47 3.93
204 205 6.055588 GTGTATGTTACTATCCATTGTGGCT 58.944 40.000 0.00 0.00 37.47 4.75
205 206 6.055588 AGTGTATGTTACTATCCATTGTGGC 58.944 40.000 0.00 0.00 37.47 5.01
206 207 8.421784 ACTAGTGTATGTTACTATCCATTGTGG 58.578 37.037 0.00 0.00 39.43 4.17
222 223 9.856488 GGGATATGTGTATGTTACTAGTGTATG 57.144 37.037 5.39 0.00 0.00 2.39
223 224 9.824216 AGGGATATGTGTATGTTACTAGTGTAT 57.176 33.333 5.39 0.00 0.00 2.29
225 226 9.298250 CTAGGGATATGTGTATGTTACTAGTGT 57.702 37.037 5.39 0.00 0.00 3.55
226 227 9.516546 TCTAGGGATATGTGTATGTTACTAGTG 57.483 37.037 5.39 0.00 0.00 2.74
227 228 9.517868 GTCTAGGGATATGTGTATGTTACTAGT 57.482 37.037 0.00 0.00 0.00 2.57
228 229 9.742144 AGTCTAGGGATATGTGTATGTTACTAG 57.258 37.037 0.00 0.00 0.00 2.57
250 251 9.469097 CCCACTATGAAGCTAGTAATATAGTCT 57.531 37.037 0.00 0.00 31.12 3.24
251 252 9.245481 ACCCACTATGAAGCTAGTAATATAGTC 57.755 37.037 0.00 0.00 31.12 2.59
257 258 8.858094 GTTACTACCCACTATGAAGCTAGTAAT 58.142 37.037 0.00 0.00 32.46 1.89
258 259 7.835682 TGTTACTACCCACTATGAAGCTAGTAA 59.164 37.037 0.00 0.00 30.78 2.24
259 260 7.348815 TGTTACTACCCACTATGAAGCTAGTA 58.651 38.462 0.00 0.00 30.78 1.82
260 261 6.192773 TGTTACTACCCACTATGAAGCTAGT 58.807 40.000 0.00 0.00 32.10 2.57
261 262 6.710597 TGTTACTACCCACTATGAAGCTAG 57.289 41.667 0.00 0.00 0.00 3.42
262 263 7.040892 CGTATGTTACTACCCACTATGAAGCTA 60.041 40.741 0.00 0.00 0.00 3.32
263 264 6.238953 CGTATGTTACTACCCACTATGAAGCT 60.239 42.308 0.00 0.00 0.00 3.74
264 265 5.919141 CGTATGTTACTACCCACTATGAAGC 59.081 44.000 0.00 0.00 0.00 3.86
265 266 6.916387 CACGTATGTTACTACCCACTATGAAG 59.084 42.308 0.00 0.00 0.00 3.02
266 267 6.377996 ACACGTATGTTACTACCCACTATGAA 59.622 38.462 0.00 0.00 34.46 2.57
267 268 5.887598 ACACGTATGTTACTACCCACTATGA 59.112 40.000 0.00 0.00 34.46 2.15
268 269 5.975344 CACACGTATGTTACTACCCACTATG 59.025 44.000 0.00 0.00 36.72 2.23
269 270 5.068198 CCACACGTATGTTACTACCCACTAT 59.932 44.000 0.00 0.00 36.72 2.12
270 271 4.398988 CCACACGTATGTTACTACCCACTA 59.601 45.833 0.00 0.00 36.72 2.74
271 272 3.194116 CCACACGTATGTTACTACCCACT 59.806 47.826 0.00 0.00 36.72 4.00
272 273 3.056607 ACCACACGTATGTTACTACCCAC 60.057 47.826 0.00 0.00 36.72 4.61
273 274 3.164268 ACCACACGTATGTTACTACCCA 58.836 45.455 0.00 0.00 36.72 4.51
274 275 3.874392 ACCACACGTATGTTACTACCC 57.126 47.619 0.00 0.00 36.72 3.69
275 276 5.708948 TGTTACCACACGTATGTTACTACC 58.291 41.667 0.00 0.00 36.72 3.18
276 277 7.028962 TGATGTTACCACACGTATGTTACTAC 58.971 38.462 0.00 0.00 36.72 2.73
277 278 7.155655 TGATGTTACCACACGTATGTTACTA 57.844 36.000 0.00 0.00 36.72 1.82
278 279 6.028146 TGATGTTACCACACGTATGTTACT 57.972 37.500 0.00 0.00 36.72 2.24
279 280 6.709145 TTGATGTTACCACACGTATGTTAC 57.291 37.500 0.00 0.00 36.72 2.50
280 281 6.128499 GCTTTGATGTTACCACACGTATGTTA 60.128 38.462 0.00 0.00 36.72 2.41
281 282 5.334569 GCTTTGATGTTACCACACGTATGTT 60.335 40.000 0.00 0.00 36.72 2.71
282 283 4.153475 GCTTTGATGTTACCACACGTATGT 59.847 41.667 0.00 0.00 40.80 2.29
283 284 4.391830 AGCTTTGATGTTACCACACGTATG 59.608 41.667 0.00 0.00 35.03 2.39
284 285 4.575885 AGCTTTGATGTTACCACACGTAT 58.424 39.130 0.00 0.00 35.03 3.06
285 286 3.997762 AGCTTTGATGTTACCACACGTA 58.002 40.909 0.00 0.00 35.03 3.57
286 287 2.846193 AGCTTTGATGTTACCACACGT 58.154 42.857 0.00 0.00 35.03 4.49
287 288 3.249799 TGAAGCTTTGATGTTACCACACG 59.750 43.478 0.00 0.00 35.03 4.49
288 289 4.829064 TGAAGCTTTGATGTTACCACAC 57.171 40.909 0.00 0.00 35.03 3.82
289 290 6.403866 AAATGAAGCTTTGATGTTACCACA 57.596 33.333 0.00 0.00 37.31 4.17
290 291 8.986477 AATAAATGAAGCTTTGATGTTACCAC 57.014 30.769 0.00 0.00 0.00 4.16
292 293 9.736023 CCTAATAAATGAAGCTTTGATGTTACC 57.264 33.333 0.00 0.00 0.00 2.85
314 315 9.725019 CCAATGCAATATGAGTCTATAACCTAA 57.275 33.333 0.00 0.00 0.00 2.69
315 316 9.100197 TCCAATGCAATATGAGTCTATAACCTA 57.900 33.333 0.00 0.00 0.00 3.08
316 317 7.977818 TCCAATGCAATATGAGTCTATAACCT 58.022 34.615 0.00 0.00 0.00 3.50
317 318 8.507249 GTTCCAATGCAATATGAGTCTATAACC 58.493 37.037 0.00 0.00 0.00 2.85
318 319 9.056005 TGTTCCAATGCAATATGAGTCTATAAC 57.944 33.333 0.00 0.00 0.00 1.89
319 320 9.797642 ATGTTCCAATGCAATATGAGTCTATAA 57.202 29.630 0.00 0.00 0.00 0.98
320 321 9.223099 CATGTTCCAATGCAATATGAGTCTATA 57.777 33.333 0.00 0.00 0.00 1.31
321 322 7.722728 ACATGTTCCAATGCAATATGAGTCTAT 59.277 33.333 0.61 0.00 0.00 1.98
322 323 7.012610 CACATGTTCCAATGCAATATGAGTCTA 59.987 37.037 0.61 0.00 0.00 2.59
323 324 5.889853 ACATGTTCCAATGCAATATGAGTCT 59.110 36.000 0.61 0.00 0.00 3.24
324 325 5.975344 CACATGTTCCAATGCAATATGAGTC 59.025 40.000 0.61 0.00 0.00 3.36
325 326 5.653330 TCACATGTTCCAATGCAATATGAGT 59.347 36.000 0.61 0.00 0.00 3.41
326 327 6.139048 TCACATGTTCCAATGCAATATGAG 57.861 37.500 0.61 0.00 0.00 2.90
327 328 6.097129 ACATCACATGTTCCAATGCAATATGA 59.903 34.615 0.61 0.00 41.63 2.15
328 329 6.277605 ACATCACATGTTCCAATGCAATATG 58.722 36.000 0.00 0.00 41.63 1.78
329 330 6.474140 ACATCACATGTTCCAATGCAATAT 57.526 33.333 0.00 0.00 41.63 1.28
330 331 5.918426 ACATCACATGTTCCAATGCAATA 57.082 34.783 0.00 0.00 41.63 1.90
331 332 4.811969 ACATCACATGTTCCAATGCAAT 57.188 36.364 0.00 0.00 41.63 3.56
343 344 8.926715 TTAGCTAGTTACTGTAACATCACATG 57.073 34.615 27.12 12.57 41.07 3.21
344 345 8.750298 ACTTAGCTAGTTACTGTAACATCACAT 58.250 33.333 27.12 11.85 41.07 3.21
345 346 8.118976 ACTTAGCTAGTTACTGTAACATCACA 57.881 34.615 27.12 10.61 41.07 3.58
346 347 8.983307 AACTTAGCTAGTTACTGTAACATCAC 57.017 34.615 27.12 15.70 45.22 3.06
376 377 9.344772 GTGAGTTAATGAGGAGAGAGATAGTTA 57.655 37.037 0.00 0.00 0.00 2.24
377 378 8.058847 AGTGAGTTAATGAGGAGAGAGATAGTT 58.941 37.037 0.00 0.00 0.00 2.24
378 379 7.502226 CAGTGAGTTAATGAGGAGAGAGATAGT 59.498 40.741 0.00 0.00 0.00 2.12
379 380 7.522073 GCAGTGAGTTAATGAGGAGAGAGATAG 60.522 44.444 0.00 0.00 0.00 2.08
380 381 6.264292 GCAGTGAGTTAATGAGGAGAGAGATA 59.736 42.308 0.00 0.00 0.00 1.98
381 382 5.068987 GCAGTGAGTTAATGAGGAGAGAGAT 59.931 44.000 0.00 0.00 0.00 2.75
382 383 4.400884 GCAGTGAGTTAATGAGGAGAGAGA 59.599 45.833 0.00 0.00 0.00 3.10
383 384 4.441356 GGCAGTGAGTTAATGAGGAGAGAG 60.441 50.000 0.00 0.00 0.00 3.20
384 385 3.449018 GGCAGTGAGTTAATGAGGAGAGA 59.551 47.826 0.00 0.00 0.00 3.10
385 386 3.196469 TGGCAGTGAGTTAATGAGGAGAG 59.804 47.826 0.00 0.00 0.00 3.20
386 387 3.055819 GTGGCAGTGAGTTAATGAGGAGA 60.056 47.826 0.00 0.00 0.00 3.71
387 388 3.265791 GTGGCAGTGAGTTAATGAGGAG 58.734 50.000 0.00 0.00 0.00 3.69
388 389 2.637382 TGTGGCAGTGAGTTAATGAGGA 59.363 45.455 0.00 0.00 0.00 3.71
389 390 3.057969 TGTGGCAGTGAGTTAATGAGG 57.942 47.619 0.00 0.00 0.00 3.86
390 391 5.220739 GCTTATGTGGCAGTGAGTTAATGAG 60.221 44.000 0.00 0.00 0.00 2.90
391 392 4.635765 GCTTATGTGGCAGTGAGTTAATGA 59.364 41.667 0.00 0.00 0.00 2.57
392 393 4.395854 TGCTTATGTGGCAGTGAGTTAATG 59.604 41.667 0.00 0.00 34.56 1.90
393 394 4.588899 TGCTTATGTGGCAGTGAGTTAAT 58.411 39.130 0.00 0.00 34.56 1.40
394 395 4.014569 TGCTTATGTGGCAGTGAGTTAA 57.985 40.909 0.00 0.00 34.56 2.01
395 396 3.694043 TGCTTATGTGGCAGTGAGTTA 57.306 42.857 0.00 0.00 34.56 2.24
396 397 2.566833 TGCTTATGTGGCAGTGAGTT 57.433 45.000 0.00 0.00 34.56 3.01
397 398 2.566833 TTGCTTATGTGGCAGTGAGT 57.433 45.000 0.00 0.00 40.90 3.41
398 399 4.445452 AATTTGCTTATGTGGCAGTGAG 57.555 40.909 0.00 0.00 40.90 3.51
399 400 4.558178 CAAATTTGCTTATGTGGCAGTGA 58.442 39.130 5.01 0.00 40.90 3.41
400 401 4.914312 CAAATTTGCTTATGTGGCAGTG 57.086 40.909 5.01 0.00 40.90 3.66
413 414 3.311966 GAGTCCAACTCAGCAAATTTGC 58.688 45.455 31.36 31.36 44.45 3.68
414 415 3.250762 TCGAGTCCAACTCAGCAAATTTG 59.749 43.478 14.03 14.03 45.30 2.32
415 416 3.476552 TCGAGTCCAACTCAGCAAATTT 58.523 40.909 7.78 0.00 45.30 1.82
416 417 3.126001 TCGAGTCCAACTCAGCAAATT 57.874 42.857 7.78 0.00 45.30 1.82
417 418 2.839486 TCGAGTCCAACTCAGCAAAT 57.161 45.000 7.78 0.00 45.30 2.32
418 419 2.224281 ACATCGAGTCCAACTCAGCAAA 60.224 45.455 7.78 0.00 45.30 3.68
419 420 1.344438 ACATCGAGTCCAACTCAGCAA 59.656 47.619 7.78 0.00 45.30 3.91
420 421 0.969149 ACATCGAGTCCAACTCAGCA 59.031 50.000 7.78 0.00 45.30 4.41
421 422 2.086054 AACATCGAGTCCAACTCAGC 57.914 50.000 7.78 0.00 45.30 4.26
422 423 4.169508 CAGTAACATCGAGTCCAACTCAG 58.830 47.826 7.78 1.37 45.30 3.35
423 424 3.614150 GCAGTAACATCGAGTCCAACTCA 60.614 47.826 7.78 0.00 45.30 3.41
424 425 2.924290 GCAGTAACATCGAGTCCAACTC 59.076 50.000 0.00 0.00 41.71 3.01
425 426 2.563179 AGCAGTAACATCGAGTCCAACT 59.437 45.455 0.00 0.00 0.00 3.16
426 427 2.668457 CAGCAGTAACATCGAGTCCAAC 59.332 50.000 0.00 0.00 0.00 3.77
427 428 2.560981 TCAGCAGTAACATCGAGTCCAA 59.439 45.455 0.00 0.00 0.00 3.53
428 429 2.167662 TCAGCAGTAACATCGAGTCCA 58.832 47.619 0.00 0.00 0.00 4.02
429 430 2.941453 TCAGCAGTAACATCGAGTCC 57.059 50.000 0.00 0.00 0.00 3.85
430 431 3.839293 ACTTCAGCAGTAACATCGAGTC 58.161 45.455 0.00 0.00 31.97 3.36
431 432 3.944055 ACTTCAGCAGTAACATCGAGT 57.056 42.857 0.00 0.00 31.97 4.18
432 433 5.403246 AGTAACTTCAGCAGTAACATCGAG 58.597 41.667 0.00 0.00 32.94 4.04
433 434 5.386958 AGTAACTTCAGCAGTAACATCGA 57.613 39.130 0.00 0.00 32.94 3.59
434 435 4.563184 GGAGTAACTTCAGCAGTAACATCG 59.437 45.833 0.00 0.00 32.94 3.84
435 436 4.870991 GGGAGTAACTTCAGCAGTAACATC 59.129 45.833 0.00 0.00 32.94 3.06
436 437 4.286032 TGGGAGTAACTTCAGCAGTAACAT 59.714 41.667 0.00 0.00 32.94 2.71
437 438 3.644265 TGGGAGTAACTTCAGCAGTAACA 59.356 43.478 0.00 0.00 32.94 2.41
438 439 3.995048 GTGGGAGTAACTTCAGCAGTAAC 59.005 47.826 0.00 0.00 32.94 2.50
439 440 3.901844 AGTGGGAGTAACTTCAGCAGTAA 59.098 43.478 0.00 0.00 32.94 2.24
440 441 3.258372 CAGTGGGAGTAACTTCAGCAGTA 59.742 47.826 0.00 0.00 32.94 2.74
441 442 2.037772 CAGTGGGAGTAACTTCAGCAGT 59.962 50.000 0.00 0.00 37.30 4.40
442 443 2.037772 ACAGTGGGAGTAACTTCAGCAG 59.962 50.000 0.00 0.00 0.00 4.24
443 444 2.047061 ACAGTGGGAGTAACTTCAGCA 58.953 47.619 0.00 0.00 0.00 4.41
444 445 2.417719 CACAGTGGGAGTAACTTCAGC 58.582 52.381 0.00 0.00 0.00 4.26
445 446 2.872038 GCCACAGTGGGAGTAACTTCAG 60.872 54.545 21.77 0.00 38.19 3.02
446 447 1.071699 GCCACAGTGGGAGTAACTTCA 59.928 52.381 21.77 0.00 38.19 3.02
447 448 1.348036 AGCCACAGTGGGAGTAACTTC 59.652 52.381 21.77 0.78 38.19 3.01
448 449 1.435256 AGCCACAGTGGGAGTAACTT 58.565 50.000 21.77 0.00 38.19 2.66
449 450 2.180276 CTAGCCACAGTGGGAGTAACT 58.820 52.381 21.77 10.69 38.19 2.24
450 451 1.900486 ACTAGCCACAGTGGGAGTAAC 59.100 52.381 21.77 3.06 38.19 2.50
451 452 2.176889 GACTAGCCACAGTGGGAGTAA 58.823 52.381 21.77 0.00 38.19 2.24
452 453 1.358103 AGACTAGCCACAGTGGGAGTA 59.642 52.381 21.77 0.00 38.19 2.59
453 454 0.115349 AGACTAGCCACAGTGGGAGT 59.885 55.000 21.77 2.87 38.19 3.85
454 455 1.270907 AAGACTAGCCACAGTGGGAG 58.729 55.000 21.77 0.00 38.19 4.30
455 456 2.615986 TAAGACTAGCCACAGTGGGA 57.384 50.000 21.77 0.00 38.19 4.37
456 457 2.501723 ACATAAGACTAGCCACAGTGGG 59.498 50.000 21.77 7.25 38.19 4.61
457 458 3.895232 ACATAAGACTAGCCACAGTGG 57.105 47.619 16.16 16.16 41.55 4.00
458 459 5.109903 GGTAACATAAGACTAGCCACAGTG 58.890 45.833 0.00 0.00 0.00 3.66
459 460 4.161754 GGGTAACATAAGACTAGCCACAGT 59.838 45.833 0.00 0.00 34.11 3.55
460 461 4.443034 GGGGTAACATAAGACTAGCCACAG 60.443 50.000 0.00 0.00 35.35 3.66
461 462 3.453353 GGGGTAACATAAGACTAGCCACA 59.547 47.826 0.00 0.00 35.35 4.17
462 463 3.181457 GGGGGTAACATAAGACTAGCCAC 60.181 52.174 0.00 0.00 35.35 5.01
463 464 3.043418 GGGGGTAACATAAGACTAGCCA 58.957 50.000 0.00 0.00 35.35 4.75
464 465 3.043418 TGGGGGTAACATAAGACTAGCC 58.957 50.000 0.00 0.00 39.74 3.93
465 466 3.710165 AGTGGGGGTAACATAAGACTAGC 59.290 47.826 0.00 0.00 39.74 3.42
466 467 6.014499 CCATAGTGGGGGTAACATAAGACTAG 60.014 46.154 0.00 0.00 39.74 2.57
467 468 5.842328 CCATAGTGGGGGTAACATAAGACTA 59.158 44.000 0.00 0.00 39.74 2.59
468 469 4.658901 CCATAGTGGGGGTAACATAAGACT 59.341 45.833 0.00 0.00 39.74 3.24
469 470 4.745783 GCCATAGTGGGGGTAACATAAGAC 60.746 50.000 0.00 0.00 38.19 3.01
470 471 3.393278 GCCATAGTGGGGGTAACATAAGA 59.607 47.826 0.00 0.00 38.19 2.10
471 472 3.394606 AGCCATAGTGGGGGTAACATAAG 59.605 47.826 0.00 0.00 38.19 1.73
472 473 3.399454 AGCCATAGTGGGGGTAACATAA 58.601 45.455 0.00 0.00 38.19 1.90
473 474 3.069084 AGCCATAGTGGGGGTAACATA 57.931 47.619 0.00 0.00 38.19 2.29
474 475 1.907240 AGCCATAGTGGGGGTAACAT 58.093 50.000 0.00 0.00 38.19 2.71
475 476 2.404559 CTAGCCATAGTGGGGGTAACA 58.595 52.381 0.00 0.00 37.88 2.41
476 477 1.071857 GCTAGCCATAGTGGGGGTAAC 59.928 57.143 2.29 0.00 37.88 2.50
477 478 1.430992 GCTAGCCATAGTGGGGGTAA 58.569 55.000 2.29 0.00 37.88 2.85
478 479 0.473117 GGCTAGCCATAGTGGGGGTA 60.473 60.000 29.33 0.00 38.19 3.69
479 480 1.770518 GGCTAGCCATAGTGGGGGT 60.771 63.158 29.33 0.00 38.19 4.95
480 481 1.062488 AAGGCTAGCCATAGTGGGGG 61.062 60.000 34.70 0.00 38.19 5.40
481 482 1.625818 CTAAGGCTAGCCATAGTGGGG 59.374 57.143 34.70 11.77 38.19 4.96
482 483 1.002544 GCTAAGGCTAGCCATAGTGGG 59.997 57.143 34.75 19.06 44.22 4.61
483 484 2.464157 GCTAAGGCTAGCCATAGTGG 57.536 55.000 34.75 21.15 44.22 4.00
491 492 7.077042 CCTAATCTAGGTGGCTAAGGCTAGC 62.077 52.000 6.04 6.04 43.91 3.42
492 493 4.464597 CCTAATCTAGGTGGCTAAGGCTAG 59.535 50.000 0.00 0.00 41.18 3.42
493 494 4.417437 CCTAATCTAGGTGGCTAAGGCTA 58.583 47.826 0.00 0.00 41.18 3.93
494 495 3.243724 CCTAATCTAGGTGGCTAAGGCT 58.756 50.000 0.00 0.00 41.18 4.58
498 499 3.439558 CCTCCCCTAATCTAGGTGGCTAA 60.440 52.174 0.00 0.00 44.73 3.09
510 511 3.268595 ACCAATCGTTTTCCTCCCCTAAT 59.731 43.478 0.00 0.00 0.00 1.73
528 530 5.772393 AGTATATGTTGTTCCTGGACCAA 57.228 39.130 2.15 2.15 0.00 3.67
529 531 5.487488 AGAAGTATATGTTGTTCCTGGACCA 59.513 40.000 0.00 0.00 0.00 4.02
579 581 4.557205 GGTCGTCATGAACTAGTGACTTT 58.443 43.478 0.00 0.00 41.90 2.66
657 659 8.517878 CGAATTAATGGGAAATTGATATGAGCT 58.482 33.333 0.00 0.00 0.00 4.09
658 660 8.514594 TCGAATTAATGGGAAATTGATATGAGC 58.485 33.333 0.00 0.00 0.00 4.26
805 813 3.301706 GCTAGTAGCTTACGAGATGTGC 58.698 50.000 15.16 0.00 38.45 4.57
824 832 2.037367 TCCTCAGTGGTAGGCGCT 59.963 61.111 7.64 0.00 37.07 5.92
946 957 1.623811 TGGTGAACTGAACCTAGCTCC 59.376 52.381 0.00 0.00 38.60 4.70
960 971 1.202758 AGATGAGGCGTTTGTGGTGAA 60.203 47.619 0.00 0.00 0.00 3.18
1177 1194 1.002366 GTGTTAGCCACAGCATCGAG 58.998 55.000 0.00 0.00 43.92 4.04
1336 1373 3.160047 ATGAGCGAGCCCAGGAGG 61.160 66.667 0.00 0.00 39.47 4.30
2790 2847 4.807443 ACGTCCTAAAGTCTGTAAAGCTC 58.193 43.478 0.00 0.00 0.00 4.09
2793 2850 5.393896 CCCCTACGTCCTAAAGTCTGTAAAG 60.394 48.000 0.00 0.00 0.00 1.85
2939 3000 3.390135 TCGGTGAAAAGATCTGTCACAC 58.610 45.455 28.13 20.69 42.81 3.82
3053 3122 4.311816 ACCAACAGATGAAGCAAAAGTG 57.688 40.909 0.00 0.00 0.00 3.16
3101 3170 7.745620 TTTCCCTTAGAAGAAGCAAAAGTAG 57.254 36.000 0.00 0.00 35.40 2.57
3143 3212 0.255890 AATGCCCCGTGCTACATCTT 59.744 50.000 0.00 0.00 42.00 2.40
3186 3255 2.243957 TGCGTGGTCAAGCAAGACG 61.244 57.895 8.96 0.00 42.48 4.18
3190 3259 0.534877 AGATGTGCGTGGTCAAGCAA 60.535 50.000 12.62 5.07 46.49 3.91
3256 3358 1.008424 CTGCGTCACTCACTCGTGT 60.008 57.895 0.00 0.00 36.33 4.49
3265 3367 1.217511 CATCTCCAGCTGCGTCACT 59.782 57.895 8.66 0.00 0.00 3.41
3317 3421 7.039504 ACAACATCTCCACTGCATCTAATTTTT 60.040 33.333 0.00 0.00 0.00 1.94
3326 3430 1.542915 GCAACAACATCTCCACTGCAT 59.457 47.619 0.00 0.00 0.00 3.96
3330 3434 4.942761 AAATTGCAACAACATCTCCACT 57.057 36.364 0.00 0.00 0.00 4.00
3332 3436 5.987777 CAAAAATTGCAACAACATCTCCA 57.012 34.783 0.00 0.00 0.00 3.86
3364 3468 5.833131 TCTTCCCTATTTTTCTGCAACAAGT 59.167 36.000 0.00 0.00 0.00 3.16
3492 3601 2.297701 GTTCCTCTTGCAACAAGGTCA 58.702 47.619 18.32 7.83 0.00 4.02
3494 3603 2.427095 GTTGTTCCTCTTGCAACAAGGT 59.573 45.455 18.32 0.00 41.90 3.50
3553 3662 1.592400 CTGACAGCTGCACGTGTGA 60.592 57.895 18.38 3.19 0.00 3.58
3628 3738 2.280797 GCAGAGGCACACGTCCAA 60.281 61.111 0.00 0.00 40.72 3.53
3635 3745 1.614903 CAGAAAAATGGCAGAGGCACA 59.385 47.619 0.00 0.00 41.84 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.