Multiple sequence alignment - TraesCS4B01G262800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G262800 chr4B 100.000 3662 0 0 1 3662 532583838 532580177 0.000000e+00 6763.0
1 TraesCS4B01G262800 chr4B 80.214 1587 259 45 1034 2592 532720783 532719224 0.000000e+00 1140.0
2 TraesCS4B01G262800 chr4B 89.496 238 23 1 3421 3656 532458332 532458095 2.140000e-77 300.0
3 TraesCS4B01G262800 chr4B 89.540 239 15 6 3427 3662 532478298 532478067 9.940000e-76 294.0
4 TraesCS4B01G262800 chr4D 92.313 2836 120 34 215 3014 434031839 434029066 0.000000e+00 3940.0
5 TraesCS4B01G262800 chr4D 80.227 1588 259 46 1034 2592 434147517 434145956 0.000000e+00 1142.0
6 TraesCS4B01G262800 chr4D 92.665 409 27 2 3256 3662 434029061 434028654 1.470000e-163 586.0
7 TraesCS4B01G262800 chr4D 93.981 216 11 2 2 216 10758144 10758358 3.530000e-85 326.0
8 TraesCS4B01G262800 chr4D 93.548 217 12 2 1 216 345009942 345010157 4.560000e-84 322.0
9 TraesCS4B01G262800 chr4D 90.204 245 21 2 3421 3662 433882552 433882308 2.120000e-82 316.0
10 TraesCS4B01G262800 chr4D 89.431 246 21 3 3421 3662 433990127 433989883 4.590000e-79 305.0
11 TraesCS4B01G262800 chr4D 87.745 204 25 0 3050 3253 214947583 214947380 4.730000e-59 239.0
12 TraesCS4B01G262800 chr4D 88.235 119 11 2 3547 3662 433991879 433991761 4.930000e-29 139.0
13 TraesCS4B01G262800 chr4D 89.423 104 7 3 3563 3662 434027017 434026914 1.070000e-25 128.0
14 TraesCS4B01G262800 chr4A 91.587 2841 133 37 222 3012 35478796 35476012 0.000000e+00 3825.0
15 TraesCS4B01G262800 chr4A 81.621 1382 224 25 1220 2592 35568491 35567131 0.000000e+00 1118.0
16 TraesCS4B01G262800 chr4A 90.220 409 36 3 3256 3662 35476008 35475602 6.960000e-147 531.0
17 TraesCS4B01G262800 chr4A 92.245 245 16 2 3421 3662 35474330 35474086 9.740000e-91 344.0
18 TraesCS4B01G262800 chr4A 87.383 214 27 0 3041 3254 286747632 286747845 2.820000e-61 246.0
19 TraesCS4B01G262800 chr4A 86.916 214 27 1 3041 3253 211380432 211380219 4.730000e-59 239.0
20 TraesCS4B01G262800 chr2D 74.118 1360 298 42 1235 2576 147968245 147966922 2.520000e-141 512.0
21 TraesCS4B01G262800 chr2D 94.470 217 10 2 1 216 418080910 418081125 2.110000e-87 333.0
22 TraesCS4B01G262800 chr2D 87.383 214 26 1 3041 3253 76002941 76002728 1.020000e-60 244.0
23 TraesCS4B01G262800 chr2D 82.609 115 14 6 2311 2422 634869493 634869604 3.010000e-16 97.1
24 TraesCS4B01G262800 chr2B 73.810 1344 302 38 1235 2562 207600065 207598756 1.530000e-133 486.0
25 TraesCS4B01G262800 chr2B 80.000 145 23 6 2311 2452 778182463 778182322 6.470000e-18 102.0
26 TraesCS4B01G262800 chr2B 86.364 66 8 1 3487 3552 179197277 179197341 1.820000e-08 71.3
27 TraesCS4B01G262800 chr2A 73.750 1360 303 39 1235 2576 154413999 154415322 5.500000e-133 484.0
28 TraesCS4B01G262800 chr2A 73.939 495 121 8 1256 1746 778595721 778595231 3.730000e-45 193.0
29 TraesCS4B01G262800 chr2A 73.939 495 121 8 1256 1746 778602118 778601628 3.730000e-45 193.0
30 TraesCS4B01G262800 chr2A 87.692 130 12 3 3482 3609 646860350 646860477 8.190000e-32 148.0
31 TraesCS4B01G262800 chr1D 94.470 217 10 2 1 216 60737182 60736967 2.110000e-87 333.0
32 TraesCS4B01G262800 chr1D 87.736 212 26 0 3041 3252 199421514 199421303 7.850000e-62 248.0
33 TraesCS4B01G262800 chr7B 94.419 215 10 2 3 216 145806449 145806236 2.730000e-86 329.0
34 TraesCS4B01G262800 chr5D 94.009 217 11 2 1 216 370562709 370562494 9.810000e-86 327.0
35 TraesCS4B01G262800 chr6D 93.548 217 12 2 1 216 291953823 291954038 4.560000e-84 322.0
36 TraesCS4B01G262800 chr6D 93.548 217 12 2 1 216 390612178 390612393 4.560000e-84 322.0
37 TraesCS4B01G262800 chr1B 93.548 217 12 2 1 216 653784450 653784665 4.560000e-84 322.0
38 TraesCS4B01G262800 chr1B 87.793 213 24 2 3041 3252 279904702 279904491 7.850000e-62 248.0
39 TraesCS4B01G262800 chr7A 89.815 216 21 1 3041 3255 694496672 694496887 3.600000e-70 276.0
40 TraesCS4B01G262800 chr7D 87.215 219 27 1 3041 3258 628667906 628667688 7.850000e-62 248.0
41 TraesCS4B01G262800 chr5B 87.619 210 26 0 3043 3252 609842669 609842460 1.020000e-60 244.0
42 TraesCS4B01G262800 chr3B 100.000 30 0 0 302 331 712996652 712996623 5.110000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G262800 chr4B 532580177 532583838 3661 True 6763.000000 6763 100.000000 1 3662 1 chr4B.!!$R3 3661
1 TraesCS4B01G262800 chr4B 532719224 532720783 1559 True 1140.000000 1140 80.214000 1034 2592 1 chr4B.!!$R4 1558
2 TraesCS4B01G262800 chr4D 434026914 434031839 4925 True 1551.333333 3940 91.467000 215 3662 3 chr4D.!!$R5 3447
3 TraesCS4B01G262800 chr4D 434145956 434147517 1561 True 1142.000000 1142 80.227000 1034 2592 1 chr4D.!!$R3 1558
4 TraesCS4B01G262800 chr4D 433989883 433991879 1996 True 222.000000 305 88.833000 3421 3662 2 chr4D.!!$R4 241
5 TraesCS4B01G262800 chr4A 35474086 35478796 4710 True 1566.666667 3825 91.350667 222 3662 3 chr4A.!!$R3 3440
6 TraesCS4B01G262800 chr4A 35567131 35568491 1360 True 1118.000000 1118 81.621000 1220 2592 1 chr4A.!!$R1 1372
7 TraesCS4B01G262800 chr2D 147966922 147968245 1323 True 512.000000 512 74.118000 1235 2576 1 chr2D.!!$R2 1341
8 TraesCS4B01G262800 chr2B 207598756 207600065 1309 True 486.000000 486 73.810000 1235 2562 1 chr2B.!!$R1 1327
9 TraesCS4B01G262800 chr2A 154413999 154415322 1323 False 484.000000 484 73.750000 1235 2576 1 chr2A.!!$F1 1341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.179040 TCGTGAAAGACCAACACCCC 60.179 55.0 0.00 0.0 0.00 4.95 F
177 178 0.248498 TCACGATGATCGAGCGGAAC 60.248 55.0 22.88 0.0 43.74 3.62 F
178 179 0.248661 CACGATGATCGAGCGGAACT 60.249 55.0 22.88 0.0 43.74 3.01 F
987 1042 0.412640 AGACTAACTTCCTCCCCCGT 59.587 55.0 0.00 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1154 1209 0.576798 CACATTCGCGCGTATCACAT 59.423 50.000 30.98 10.29 0.00 3.21 R
1272 1381 0.943835 TCTGCGTGTCCGTGATGTTG 60.944 55.000 0.00 0.00 36.15 3.33 R
1726 1835 2.267006 CTGCATGACGAGCCACCT 59.733 61.111 0.00 0.00 0.00 4.00 R
2679 2808 0.744874 GCCGCTGATCAGTAGTACCA 59.255 55.000 23.38 0.00 0.00 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.692257 GGATCGGACTTCATGGATGAT 57.308 47.619 0.00 0.00 36.56 2.45
21 22 4.013267 GGATCGGACTTCATGGATGATT 57.987 45.455 0.00 0.00 36.56 2.57
22 23 4.392940 GGATCGGACTTCATGGATGATTT 58.607 43.478 0.00 0.00 36.56 2.17
23 24 4.453819 GGATCGGACTTCATGGATGATTTC 59.546 45.833 0.00 0.00 36.56 2.17
24 25 3.457234 TCGGACTTCATGGATGATTTCG 58.543 45.455 0.00 0.00 36.56 3.46
25 26 3.118775 TCGGACTTCATGGATGATTTCGT 60.119 43.478 0.00 0.00 36.56 3.85
26 27 3.001634 CGGACTTCATGGATGATTTCGTG 59.998 47.826 0.00 0.00 36.56 4.35
27 28 4.191544 GGACTTCATGGATGATTTCGTGA 58.808 43.478 0.00 0.00 36.56 4.35
28 29 4.635765 GGACTTCATGGATGATTTCGTGAA 59.364 41.667 0.00 0.00 36.56 3.18
29 30 5.123820 GGACTTCATGGATGATTTCGTGAAA 59.876 40.000 0.00 0.00 36.56 2.69
30 31 6.187125 ACTTCATGGATGATTTCGTGAAAG 57.813 37.500 1.20 0.00 36.56 2.62
31 32 5.939883 ACTTCATGGATGATTTCGTGAAAGA 59.060 36.000 1.20 0.00 36.56 2.52
32 33 5.801350 TCATGGATGATTTCGTGAAAGAC 57.199 39.130 1.20 0.00 33.32 3.01
33 34 4.635765 TCATGGATGATTTCGTGAAAGACC 59.364 41.667 1.20 3.06 33.32 3.85
34 35 4.014569 TGGATGATTTCGTGAAAGACCA 57.985 40.909 1.20 5.23 33.32 4.02
35 36 4.393834 TGGATGATTTCGTGAAAGACCAA 58.606 39.130 1.20 0.00 33.32 3.67
36 37 4.215399 TGGATGATTTCGTGAAAGACCAAC 59.785 41.667 1.20 0.00 33.32 3.77
37 38 4.215399 GGATGATTTCGTGAAAGACCAACA 59.785 41.667 1.20 0.00 33.32 3.33
38 39 4.545823 TGATTTCGTGAAAGACCAACAC 57.454 40.909 1.20 0.00 33.32 3.32
39 40 3.314080 TGATTTCGTGAAAGACCAACACC 59.686 43.478 1.20 0.00 33.32 4.16
40 41 1.670791 TTCGTGAAAGACCAACACCC 58.329 50.000 0.00 0.00 0.00 4.61
41 42 0.179040 TCGTGAAAGACCAACACCCC 60.179 55.000 0.00 0.00 0.00 4.95
42 43 0.464735 CGTGAAAGACCAACACCCCA 60.465 55.000 0.00 0.00 0.00 4.96
43 44 1.817740 CGTGAAAGACCAACACCCCAT 60.818 52.381 0.00 0.00 0.00 4.00
44 45 1.886542 GTGAAAGACCAACACCCCATC 59.113 52.381 0.00 0.00 0.00 3.51
45 46 1.203001 TGAAAGACCAACACCCCATCC 60.203 52.381 0.00 0.00 0.00 3.51
46 47 0.856982 AAAGACCAACACCCCATCCA 59.143 50.000 0.00 0.00 0.00 3.41
47 48 0.856982 AAGACCAACACCCCATCCAA 59.143 50.000 0.00 0.00 0.00 3.53
48 49 0.856982 AGACCAACACCCCATCCAAA 59.143 50.000 0.00 0.00 0.00 3.28
49 50 1.219213 AGACCAACACCCCATCCAAAA 59.781 47.619 0.00 0.00 0.00 2.44
50 51 2.158173 AGACCAACACCCCATCCAAAAT 60.158 45.455 0.00 0.00 0.00 1.82
51 52 3.076785 AGACCAACACCCCATCCAAAATA 59.923 43.478 0.00 0.00 0.00 1.40
52 53 3.835395 GACCAACACCCCATCCAAAATAA 59.165 43.478 0.00 0.00 0.00 1.40
53 54 4.235372 ACCAACACCCCATCCAAAATAAA 58.765 39.130 0.00 0.00 0.00 1.40
54 55 4.660771 ACCAACACCCCATCCAAAATAAAA 59.339 37.500 0.00 0.00 0.00 1.52
55 56 5.311913 ACCAACACCCCATCCAAAATAAAAT 59.688 36.000 0.00 0.00 0.00 1.82
56 57 5.879777 CCAACACCCCATCCAAAATAAAATC 59.120 40.000 0.00 0.00 0.00 2.17
57 58 5.337578 ACACCCCATCCAAAATAAAATCG 57.662 39.130 0.00 0.00 0.00 3.34
58 59 4.161377 ACACCCCATCCAAAATAAAATCGG 59.839 41.667 0.00 0.00 0.00 4.18
59 60 4.161377 CACCCCATCCAAAATAAAATCGGT 59.839 41.667 0.00 0.00 0.00 4.69
60 61 4.404394 ACCCCATCCAAAATAAAATCGGTC 59.596 41.667 0.00 0.00 0.00 4.79
61 62 4.649218 CCCCATCCAAAATAAAATCGGTCT 59.351 41.667 0.00 0.00 0.00 3.85
62 63 5.128663 CCCCATCCAAAATAAAATCGGTCTT 59.871 40.000 0.00 0.00 0.00 3.01
63 64 6.351796 CCCCATCCAAAATAAAATCGGTCTTT 60.352 38.462 0.00 0.00 0.00 2.52
64 65 6.534793 CCCATCCAAAATAAAATCGGTCTTTG 59.465 38.462 0.00 0.00 0.00 2.77
65 66 7.319646 CCATCCAAAATAAAATCGGTCTTTGA 58.680 34.615 0.00 0.00 0.00 2.69
66 67 7.981225 CCATCCAAAATAAAATCGGTCTTTGAT 59.019 33.333 0.00 0.00 0.00 2.57
67 68 8.810427 CATCCAAAATAAAATCGGTCTTTGATG 58.190 33.333 0.00 0.00 0.00 3.07
68 69 8.116651 TCCAAAATAAAATCGGTCTTTGATGA 57.883 30.769 0.00 0.00 0.00 2.92
69 70 8.580720 TCCAAAATAAAATCGGTCTTTGATGAA 58.419 29.630 0.00 0.00 0.00 2.57
70 71 8.863049 CCAAAATAAAATCGGTCTTTGATGAAG 58.137 33.333 0.00 0.00 36.67 3.02
71 72 8.863049 CAAAATAAAATCGGTCTTTGATGAAGG 58.137 33.333 0.00 0.00 35.98 3.46
72 73 4.440839 AAAATCGGTCTTTGATGAAGGC 57.559 40.909 0.00 0.00 39.30 4.35
73 74 1.656652 ATCGGTCTTTGATGAAGGCG 58.343 50.000 0.00 0.00 40.98 5.52
74 75 0.391130 TCGGTCTTTGATGAAGGCGG 60.391 55.000 0.00 0.00 40.98 6.13
75 76 0.391130 CGGTCTTTGATGAAGGCGGA 60.391 55.000 0.00 0.00 41.35 5.54
76 77 1.743772 CGGTCTTTGATGAAGGCGGAT 60.744 52.381 0.00 0.00 41.35 4.18
77 78 2.369394 GGTCTTTGATGAAGGCGGATT 58.631 47.619 0.00 0.00 40.98 3.01
78 79 2.098117 GGTCTTTGATGAAGGCGGATTG 59.902 50.000 0.00 0.00 40.98 2.67
79 80 2.098117 GTCTTTGATGAAGGCGGATTGG 59.902 50.000 0.00 0.00 35.98 3.16
80 81 2.094675 CTTTGATGAAGGCGGATTGGT 58.905 47.619 0.00 0.00 0.00 3.67
81 82 2.214376 TTGATGAAGGCGGATTGGTT 57.786 45.000 0.00 0.00 0.00 3.67
82 83 1.462616 TGATGAAGGCGGATTGGTTG 58.537 50.000 0.00 0.00 0.00 3.77
83 84 0.740737 GATGAAGGCGGATTGGTTGG 59.259 55.000 0.00 0.00 0.00 3.77
84 85 0.684153 ATGAAGGCGGATTGGTTGGG 60.684 55.000 0.00 0.00 0.00 4.12
85 86 2.037208 AAGGCGGATTGGTTGGGG 59.963 61.111 0.00 0.00 0.00 4.96
86 87 2.781431 GAAGGCGGATTGGTTGGGGT 62.781 60.000 0.00 0.00 0.00 4.95
87 88 3.068064 GGCGGATTGGTTGGGGTG 61.068 66.667 0.00 0.00 0.00 4.61
88 89 3.068064 GCGGATTGGTTGGGGTGG 61.068 66.667 0.00 0.00 0.00 4.61
89 90 2.362375 CGGATTGGTTGGGGTGGG 60.362 66.667 0.00 0.00 0.00 4.61
90 91 2.858655 GGATTGGTTGGGGTGGGT 59.141 61.111 0.00 0.00 0.00 4.51
91 92 1.609210 GGATTGGTTGGGGTGGGTG 60.609 63.158 0.00 0.00 0.00 4.61
92 93 1.462928 GATTGGTTGGGGTGGGTGA 59.537 57.895 0.00 0.00 0.00 4.02
93 94 0.898326 GATTGGTTGGGGTGGGTGAC 60.898 60.000 0.00 0.00 0.00 3.67
94 95 1.660019 ATTGGTTGGGGTGGGTGACA 61.660 55.000 0.00 0.00 0.00 3.58
95 96 1.875422 TTGGTTGGGGTGGGTGACAA 61.875 55.000 0.00 0.00 0.00 3.18
96 97 1.530655 GGTTGGGGTGGGTGACAAG 60.531 63.158 0.00 0.00 0.00 3.16
97 98 1.229076 GTTGGGGTGGGTGACAAGT 59.771 57.895 0.00 0.00 0.00 3.16
98 99 0.822121 GTTGGGGTGGGTGACAAGTC 60.822 60.000 0.00 0.00 0.00 3.01
99 100 2.002018 TTGGGGTGGGTGACAAGTCC 62.002 60.000 0.00 0.00 0.00 3.85
100 101 2.032071 GGGTGGGTGACAAGTCCG 59.968 66.667 0.00 0.00 0.00 4.79
101 102 2.668550 GGTGGGTGACAAGTCCGC 60.669 66.667 0.00 0.00 0.00 5.54
102 103 2.110213 GTGGGTGACAAGTCCGCA 59.890 61.111 0.00 1.75 0.00 5.69
103 104 1.525077 GTGGGTGACAAGTCCGCAA 60.525 57.895 8.98 0.00 0.00 4.85
104 105 1.227823 TGGGTGACAAGTCCGCAAG 60.228 57.895 0.00 0.00 0.00 4.01
105 106 1.070786 GGGTGACAAGTCCGCAAGA 59.929 57.895 0.00 0.00 43.02 3.02
106 107 0.534203 GGGTGACAAGTCCGCAAGAA 60.534 55.000 0.00 0.00 43.02 2.52
107 108 0.868406 GGTGACAAGTCCGCAAGAAG 59.132 55.000 0.00 0.00 43.02 2.85
108 109 0.868406 GTGACAAGTCCGCAAGAAGG 59.132 55.000 0.00 0.00 43.02 3.46
109 110 0.250295 TGACAAGTCCGCAAGAAGGG 60.250 55.000 0.00 0.00 43.02 3.95
110 111 0.250338 GACAAGTCCGCAAGAAGGGT 60.250 55.000 0.00 0.00 43.02 4.34
111 112 0.250338 ACAAGTCCGCAAGAAGGGTC 60.250 55.000 0.00 0.00 43.02 4.46
112 113 0.250295 CAAGTCCGCAAGAAGGGTCA 60.250 55.000 0.00 0.00 43.02 4.02
113 114 0.250338 AAGTCCGCAAGAAGGGTCAC 60.250 55.000 0.00 0.00 43.02 3.67
114 115 1.671379 GTCCGCAAGAAGGGTCACC 60.671 63.158 0.00 0.00 43.02 4.02
115 116 2.359975 CCGCAAGAAGGGTCACCC 60.360 66.667 3.85 3.85 42.67 4.61
127 128 3.487120 GGGTCACCCTATTGACATACC 57.513 52.381 5.22 0.00 46.68 2.73
128 129 2.105993 GGGTCACCCTATTGACATACCC 59.894 54.545 5.22 0.00 46.68 3.69
129 130 3.046374 GGTCACCCTATTGACATACCCT 58.954 50.000 5.67 0.00 46.68 4.34
130 131 3.458487 GGTCACCCTATTGACATACCCTT 59.542 47.826 5.67 0.00 46.68 3.95
131 132 4.079958 GGTCACCCTATTGACATACCCTTT 60.080 45.833 5.67 0.00 46.68 3.11
132 133 4.881850 GTCACCCTATTGACATACCCTTTG 59.118 45.833 0.00 0.00 44.62 2.77
133 134 4.080015 TCACCCTATTGACATACCCTTTGG 60.080 45.833 0.00 0.00 37.80 3.28
134 135 3.222603 CCCTATTGACATACCCTTTGGC 58.777 50.000 0.00 0.00 33.59 4.52
135 136 3.222603 CCTATTGACATACCCTTTGGCC 58.777 50.000 0.00 0.00 33.59 5.36
136 137 2.917713 ATTGACATACCCTTTGGCCA 57.082 45.000 0.00 0.00 33.59 5.36
137 138 2.214376 TTGACATACCCTTTGGCCAG 57.786 50.000 5.11 0.00 33.59 4.85
138 139 0.331278 TGACATACCCTTTGGCCAGG 59.669 55.000 5.11 6.77 33.59 4.45
139 140 0.623723 GACATACCCTTTGGCCAGGA 59.376 55.000 16.13 3.62 35.71 3.86
140 141 1.215423 GACATACCCTTTGGCCAGGAT 59.785 52.381 16.13 0.00 35.71 3.24
141 142 1.215423 ACATACCCTTTGGCCAGGATC 59.785 52.381 16.13 0.00 35.71 3.36
142 143 0.853530 ATACCCTTTGGCCAGGATCC 59.146 55.000 16.13 2.48 35.71 3.36
143 144 0.253630 TACCCTTTGGCCAGGATCCT 60.254 55.000 16.13 9.02 35.71 3.24
144 145 1.076485 CCCTTTGGCCAGGATCCTG 60.076 63.158 31.69 31.69 43.26 3.86
145 146 1.574526 CCCTTTGGCCAGGATCCTGA 61.575 60.000 38.37 19.49 46.30 3.86
146 147 0.332632 CCTTTGGCCAGGATCCTGAA 59.667 55.000 38.37 23.87 46.30 3.02
147 148 1.684248 CCTTTGGCCAGGATCCTGAAG 60.684 57.143 38.37 30.41 46.30 3.02
148 149 1.283029 CTTTGGCCAGGATCCTGAAGA 59.717 52.381 38.37 20.30 46.30 2.87
149 150 1.600058 TTGGCCAGGATCCTGAAGAT 58.400 50.000 38.37 2.79 46.30 2.40
173 174 3.673001 GTTAATCACGATGATCGAGCG 57.327 47.619 22.88 9.38 43.74 5.03
174 175 2.331809 TAATCACGATGATCGAGCGG 57.668 50.000 22.88 7.91 43.74 5.52
175 176 0.668535 AATCACGATGATCGAGCGGA 59.331 50.000 22.88 12.83 43.74 5.54
176 177 0.668535 ATCACGATGATCGAGCGGAA 59.331 50.000 22.88 0.00 43.74 4.30
177 178 0.248498 TCACGATGATCGAGCGGAAC 60.248 55.000 22.88 0.00 43.74 3.62
178 179 0.248661 CACGATGATCGAGCGGAACT 60.249 55.000 22.88 0.00 43.74 3.01
179 180 0.248661 ACGATGATCGAGCGGAACTG 60.249 55.000 22.88 0.00 43.74 3.16
180 181 0.936764 CGATGATCGAGCGGAACTGG 60.937 60.000 9.62 0.00 43.74 4.00
181 182 1.218230 GATGATCGAGCGGAACTGGC 61.218 60.000 0.00 0.00 0.00 4.85
182 183 2.956964 GATCGAGCGGAACTGGCG 60.957 66.667 0.00 0.00 35.00 5.69
183 184 4.514577 ATCGAGCGGAACTGGCGG 62.515 66.667 0.00 0.00 35.00 6.13
185 186 4.514577 CGAGCGGAACTGGCGGAT 62.515 66.667 0.00 0.00 35.00 4.18
186 187 2.892425 GAGCGGAACTGGCGGATG 60.892 66.667 0.00 0.00 35.00 3.51
187 188 3.665675 GAGCGGAACTGGCGGATGT 62.666 63.158 0.00 0.00 35.00 3.06
188 189 3.195698 GCGGAACTGGCGGATGTC 61.196 66.667 0.00 0.00 0.00 3.06
189 190 2.511600 CGGAACTGGCGGATGTCC 60.512 66.667 0.00 2.80 0.00 4.02
207 208 3.658422 GAGGCCCCCGGAACCTTT 61.658 66.667 0.73 0.00 32.67 3.11
208 209 3.938637 GAGGCCCCCGGAACCTTTG 62.939 68.421 0.73 0.00 32.67 2.77
211 212 3.261677 CCCCCGGAACCTTTGGGA 61.262 66.667 0.73 0.00 46.41 4.37
212 213 2.622447 CCCCCGGAACCTTTGGGAT 61.622 63.158 0.73 0.00 46.41 3.85
213 214 1.379843 CCCCGGAACCTTTGGGATG 60.380 63.158 0.73 0.00 46.41 3.51
220 221 0.779997 AACCTTTGGGATGAGCCACT 59.220 50.000 0.00 0.00 38.95 4.00
256 257 4.216042 GCCAAATAAAGCAATTTGTTGGCT 59.784 37.500 22.32 3.28 44.40 4.75
437 446 2.103432 TGAACTTCTTGCGGGTGTAGAA 59.897 45.455 0.00 0.00 0.00 2.10
465 474 1.804748 GGAGTAGCGGTTTTTGGACAG 59.195 52.381 0.00 0.00 0.00 3.51
486 495 3.886505 AGTCTAGGATCGTTGTCATCTCC 59.113 47.826 0.00 0.00 0.00 3.71
514 523 1.523154 GGTGGGAAATTGCAGCACGA 61.523 55.000 0.00 0.00 0.00 4.35
545 554 2.973983 TTAACCCGGACAATCCCAAA 57.026 45.000 0.73 0.00 31.13 3.28
560 569 2.429610 TCCCAAACGTAGACTAGCATCC 59.570 50.000 0.00 0.00 0.00 3.51
584 593 6.036735 CCTTCTCTACTGAAAACGACACAAAA 59.963 38.462 0.00 0.00 0.00 2.44
633 648 5.575218 ACGTTTTTCAAACTCCAATCACAAC 59.425 36.000 0.00 0.00 0.00 3.32
649 664 4.992688 TCACAACAGAACACAAATTCACC 58.007 39.130 0.00 0.00 0.00 4.02
663 685 4.965119 AATTCACCCTTTATTCAGCGAC 57.035 40.909 0.00 0.00 0.00 5.19
672 694 4.328983 CCTTTATTCAGCGACACATACGTT 59.671 41.667 0.00 0.00 0.00 3.99
673 695 5.444586 TTTATTCAGCGACACATACGTTC 57.555 39.130 0.00 0.00 0.00 3.95
680 702 2.222223 GCGACACATACGTTCGAGAAAC 60.222 50.000 10.57 0.00 34.31 2.78
761 807 1.188219 AGTCGTCTGGCTCCACATGT 61.188 55.000 0.00 0.00 0.00 3.21
836 882 0.541392 TCACATGATAGCAACGCCCT 59.459 50.000 0.00 0.00 0.00 5.19
845 891 3.636231 CAACGCCCTGGGTCCTCA 61.636 66.667 15.56 0.00 0.00 3.86
868 916 2.906389 TGGGCGCTATTAATCTGAGGAT 59.094 45.455 7.64 0.00 0.00 3.24
893 941 1.475280 ACCAGTATTTAGAGCGTGCGA 59.525 47.619 0.00 0.00 0.00 5.10
894 942 2.094390 ACCAGTATTTAGAGCGTGCGAA 60.094 45.455 0.00 0.00 0.00 4.70
895 943 2.535984 CCAGTATTTAGAGCGTGCGAAG 59.464 50.000 0.00 0.00 0.00 3.79
896 944 2.535984 CAGTATTTAGAGCGTGCGAAGG 59.464 50.000 0.00 0.00 0.00 3.46
897 945 1.258197 GTATTTAGAGCGTGCGAAGGC 59.742 52.381 0.00 0.00 40.52 4.35
898 946 1.421410 ATTTAGAGCGTGCGAAGGCG 61.421 55.000 1.68 0.00 44.10 5.52
899 947 2.480853 TTTAGAGCGTGCGAAGGCGA 62.481 55.000 1.68 0.00 44.10 5.54
900 948 2.867333 TTAGAGCGTGCGAAGGCGAG 62.867 60.000 1.68 0.00 44.10 5.03
902 950 4.664677 AGCGTGCGAAGGCGAGTT 62.665 61.111 1.68 0.00 44.10 3.01
903 951 4.430423 GCGTGCGAAGGCGAGTTG 62.430 66.667 0.00 0.00 44.10 3.16
904 952 4.430423 CGTGCGAAGGCGAGTTGC 62.430 66.667 0.00 0.00 44.10 4.17
972 1027 1.589113 GAGAGCCACTTCGCAGACT 59.411 57.895 0.00 0.00 34.32 3.24
987 1042 0.412640 AGACTAACTTCCTCCCCCGT 59.587 55.000 0.00 0.00 0.00 5.28
988 1043 1.203275 AGACTAACTTCCTCCCCCGTT 60.203 52.381 0.00 0.00 0.00 4.44
989 1044 1.627329 GACTAACTTCCTCCCCCGTTT 59.373 52.381 0.00 0.00 0.00 3.60
990 1045 1.627329 ACTAACTTCCTCCCCCGTTTC 59.373 52.381 0.00 0.00 0.00 2.78
991 1046 1.626825 CTAACTTCCTCCCCCGTTTCA 59.373 52.381 0.00 0.00 0.00 2.69
992 1047 0.848053 AACTTCCTCCCCCGTTTCAA 59.152 50.000 0.00 0.00 0.00 2.69
1005 1060 3.574614 CCGTTTCAATTTCACCATGTCC 58.425 45.455 0.00 0.00 0.00 4.02
1154 1209 4.096532 CACCTCTCACTAGCTTTCGTATCA 59.903 45.833 0.00 0.00 0.00 2.15
1168 1223 1.681825 GTATCATGTGATACGCGCGA 58.318 50.000 39.36 20.78 44.88 5.87
1272 1381 5.792741 CAGATATTCATGAAGAGGGACCTC 58.207 45.833 14.54 10.40 43.03 3.85
2148 2260 2.430367 GTGGCCACGTTCCTCCTT 59.570 61.111 22.49 0.00 0.00 3.36
2613 2742 2.435938 GGCGATGGCGTGGAGAAA 60.436 61.111 0.00 0.00 41.24 2.52
2690 2819 5.771165 TCAACACTGTATGTGGTACTACTGA 59.229 40.000 10.95 0.00 46.35 3.41
2691 2820 6.436218 TCAACACTGTATGTGGTACTACTGAT 59.564 38.462 10.95 0.00 46.35 2.90
2692 2821 6.752351 CAACACTGTATGTGGTACTACTGATC 59.248 42.308 10.95 0.22 46.35 2.92
2698 2837 0.744874 TGGTACTACTGATCAGCGGC 59.255 55.000 22.83 10.72 0.00 6.53
2716 2855 1.669795 GGCCGTCCAAAAGCTTCAATG 60.670 52.381 0.00 0.00 0.00 2.82
2726 2865 5.391736 CCAAAAGCTTCAATGACTAGCTGAG 60.392 44.000 9.90 4.10 44.05 3.35
2752 2891 6.480524 TTCATACTTGTGAGTTTGGATTCG 57.519 37.500 0.00 0.00 36.06 3.34
2791 2943 1.625616 CCTACGTACGGTCAAAGCTG 58.374 55.000 21.06 0.00 0.00 4.24
2797 2949 2.180159 TACGGTCAAAGCTGCTCCCC 62.180 60.000 1.00 0.00 0.00 4.81
2848 3001 8.918961 TTTCCACACTACACAAATGTTAAAAG 57.081 30.769 0.00 0.00 40.48 2.27
2884 3037 7.707624 TTTAAGACGGAGAGAGTATAAACCA 57.292 36.000 0.00 0.00 0.00 3.67
2886 3039 5.579564 AGACGGAGAGAGTATAAACCAAC 57.420 43.478 0.00 0.00 0.00 3.77
2887 3040 4.096081 AGACGGAGAGAGTATAAACCAACG 59.904 45.833 0.00 0.00 0.00 4.10
2889 3042 4.142513 ACGGAGAGAGTATAAACCAACGAC 60.143 45.833 0.00 0.00 0.00 4.34
2914 3070 8.897752 ACTATAAGAGCCAAATTTGATCTTCAC 58.102 33.333 27.66 12.35 36.30 3.18
2919 3075 6.944862 AGAGCCAAATTTGATCTTCACTAACT 59.055 34.615 19.86 5.13 0.00 2.24
2920 3076 7.449704 AGAGCCAAATTTGATCTTCACTAACTT 59.550 33.333 19.86 0.00 0.00 2.66
3014 3170 6.200475 GCCCGTCAGATTTATAACAACTACTC 59.800 42.308 0.00 0.00 0.00 2.59
3015 3171 6.700520 CCCGTCAGATTTATAACAACTACTCC 59.299 42.308 0.00 0.00 0.00 3.85
3016 3172 6.700520 CCGTCAGATTTATAACAACTACTCCC 59.299 42.308 0.00 0.00 0.00 4.30
3017 3173 6.700520 CGTCAGATTTATAACAACTACTCCCC 59.299 42.308 0.00 0.00 0.00 4.81
3018 3174 6.990939 GTCAGATTTATAACAACTACTCCCCC 59.009 42.308 0.00 0.00 0.00 5.40
3019 3175 5.989777 CAGATTTATAACAACTACTCCCCCG 59.010 44.000 0.00 0.00 0.00 5.73
3020 3176 4.758773 TTTATAACAACTACTCCCCCGG 57.241 45.455 0.00 0.00 0.00 5.73
3021 3177 2.259014 ATAACAACTACTCCCCCGGT 57.741 50.000 0.00 0.00 0.00 5.28
3022 3178 1.560505 TAACAACTACTCCCCCGGTC 58.439 55.000 0.00 0.00 0.00 4.79
3023 3179 0.178912 AACAACTACTCCCCCGGTCT 60.179 55.000 0.00 0.00 0.00 3.85
3024 3180 0.178912 ACAACTACTCCCCCGGTCTT 60.179 55.000 0.00 0.00 0.00 3.01
3025 3181 0.981943 CAACTACTCCCCCGGTCTTT 59.018 55.000 0.00 0.00 0.00 2.52
3026 3182 1.350019 CAACTACTCCCCCGGTCTTTT 59.650 52.381 0.00 0.00 0.00 2.27
3027 3183 1.738474 ACTACTCCCCCGGTCTTTTT 58.262 50.000 0.00 0.00 0.00 1.94
3094 3250 5.424121 AAAGTATCAACGCTCATAATGCC 57.576 39.130 0.00 0.00 0.00 4.40
3095 3251 4.071961 AGTATCAACGCTCATAATGCCA 57.928 40.909 0.00 0.00 0.00 4.92
3096 3252 4.450976 AGTATCAACGCTCATAATGCCAA 58.549 39.130 0.00 0.00 0.00 4.52
3097 3253 4.881273 AGTATCAACGCTCATAATGCCAAA 59.119 37.500 0.00 0.00 0.00 3.28
3098 3254 4.924305 ATCAACGCTCATAATGCCAAAT 57.076 36.364 0.00 0.00 0.00 2.32
3099 3255 4.291540 TCAACGCTCATAATGCCAAATC 57.708 40.909 0.00 0.00 0.00 2.17
3100 3256 3.693578 TCAACGCTCATAATGCCAAATCA 59.306 39.130 0.00 0.00 0.00 2.57
3101 3257 4.157472 TCAACGCTCATAATGCCAAATCAA 59.843 37.500 0.00 0.00 0.00 2.57
3102 3258 4.924305 ACGCTCATAATGCCAAATCAAT 57.076 36.364 0.00 0.00 0.00 2.57
3103 3259 6.039159 TCAACGCTCATAATGCCAAATCAATA 59.961 34.615 0.00 0.00 0.00 1.90
3104 3260 6.579666 ACGCTCATAATGCCAAATCAATAT 57.420 33.333 0.00 0.00 0.00 1.28
3105 3261 6.985117 ACGCTCATAATGCCAAATCAATATT 58.015 32.000 0.00 0.00 0.00 1.28
3106 3262 6.864685 ACGCTCATAATGCCAAATCAATATTG 59.135 34.615 9.29 9.29 0.00 1.90
3107 3263 6.864685 CGCTCATAATGCCAAATCAATATTGT 59.135 34.615 14.97 0.43 0.00 2.71
3108 3264 7.383029 CGCTCATAATGCCAAATCAATATTGTT 59.617 33.333 14.97 4.27 0.00 2.83
3109 3265 9.695526 GCTCATAATGCCAAATCAATATTGTTA 57.304 29.630 14.97 4.66 0.00 2.41
3197 3353 7.856145 AATGTTTATTTGGTCAAAGTTTGCA 57.144 28.000 10.90 1.36 33.32 4.08
3198 3354 7.856145 ATGTTTATTTGGTCAAAGTTTGCAA 57.144 28.000 10.90 7.54 33.32 4.08
3199 3355 7.301068 TGTTTATTTGGTCAAAGTTTGCAAG 57.699 32.000 10.90 0.00 33.32 4.01
3200 3356 7.099764 TGTTTATTTGGTCAAAGTTTGCAAGA 58.900 30.769 10.90 0.00 33.32 3.02
3201 3357 7.768120 TGTTTATTTGGTCAAAGTTTGCAAGAT 59.232 29.630 10.90 8.83 33.32 2.40
3202 3358 8.611757 GTTTATTTGGTCAAAGTTTGCAAGATT 58.388 29.630 10.90 0.00 33.32 2.40
3203 3359 8.729805 TTATTTGGTCAAAGTTTGCAAGATTT 57.270 26.923 10.90 2.10 33.32 2.17
3204 3360 6.419980 TTTGGTCAAAGTTTGCAAGATTTG 57.580 33.333 22.74 22.74 34.66 2.32
3205 3361 5.336150 TGGTCAAAGTTTGCAAGATTTGA 57.664 34.783 25.35 25.35 38.85 2.69
3209 3365 6.890663 TCAAAGTTTGCAAGATTTGACTTG 57.109 33.333 25.35 14.71 46.69 3.16
3210 3366 6.629128 TCAAAGTTTGCAAGATTTGACTTGA 58.371 32.000 25.35 16.10 46.85 3.02
3211 3367 7.267128 TCAAAGTTTGCAAGATTTGACTTGAT 58.733 30.769 25.35 7.20 46.85 2.57
3212 3368 8.412456 TCAAAGTTTGCAAGATTTGACTTGATA 58.588 29.630 25.35 10.95 46.85 2.15
3213 3369 8.482429 CAAAGTTTGCAAGATTTGACTTGATAC 58.518 33.333 23.69 6.37 46.85 2.24
3214 3370 7.275888 AGTTTGCAAGATTTGACTTGATACA 57.724 32.000 11.75 0.00 46.85 2.29
3215 3371 7.715657 AGTTTGCAAGATTTGACTTGATACAA 58.284 30.769 11.75 4.80 46.85 2.41
3216 3372 8.196771 AGTTTGCAAGATTTGACTTGATACAAA 58.803 29.630 11.75 9.47 46.85 2.83
3217 3373 8.981647 GTTTGCAAGATTTGACTTGATACAAAT 58.018 29.630 11.75 0.00 46.85 2.32
3227 3383 7.389603 TGACTTGATACAAATCTAATACGCG 57.610 36.000 3.53 3.53 32.93 6.01
3228 3384 6.419710 TGACTTGATACAAATCTAATACGCGG 59.580 38.462 12.47 0.00 32.93 6.46
3229 3385 6.509656 ACTTGATACAAATCTAATACGCGGA 58.490 36.000 12.47 0.00 32.93 5.54
3230 3386 6.641314 ACTTGATACAAATCTAATACGCGGAG 59.359 38.462 12.47 1.75 32.93 4.63
3231 3387 6.080648 TGATACAAATCTAATACGCGGAGT 57.919 37.500 12.47 2.60 32.93 3.85
3232 3388 7.205737 TGATACAAATCTAATACGCGGAGTA 57.794 36.000 12.47 4.11 34.94 2.59
3233 3389 7.650890 TGATACAAATCTAATACGCGGAGTAA 58.349 34.615 12.47 0.00 34.49 2.24
3234 3390 8.136800 TGATACAAATCTAATACGCGGAGTAAA 58.863 33.333 12.47 0.00 34.49 2.01
3235 3391 8.876275 ATACAAATCTAATACGCGGAGTAAAA 57.124 30.769 12.47 0.00 39.04 1.52
3236 3392 7.599630 ACAAATCTAATACGCGGAGTAAAAA 57.400 32.000 12.47 0.00 39.04 1.94
3237 3393 7.681903 ACAAATCTAATACGCGGAGTAAAAAG 58.318 34.615 12.47 0.00 39.04 2.27
3238 3394 6.839820 AATCTAATACGCGGAGTAAAAAGG 57.160 37.500 12.47 0.00 39.04 3.11
3239 3395 5.581126 TCTAATACGCGGAGTAAAAAGGA 57.419 39.130 12.47 0.00 39.04 3.36
3240 3396 5.343249 TCTAATACGCGGAGTAAAAAGGAC 58.657 41.667 12.47 0.00 39.04 3.85
3241 3397 2.368655 TACGCGGAGTAAAAAGGACC 57.631 50.000 12.47 0.00 31.26 4.46
3242 3398 0.393820 ACGCGGAGTAAAAAGGACCA 59.606 50.000 12.47 0.00 0.00 4.02
3243 3399 1.076332 CGCGGAGTAAAAAGGACCAG 58.924 55.000 0.00 0.00 0.00 4.00
3244 3400 1.337447 CGCGGAGTAAAAAGGACCAGA 60.337 52.381 0.00 0.00 0.00 3.86
3245 3401 2.347731 GCGGAGTAAAAAGGACCAGAG 58.652 52.381 0.00 0.00 0.00 3.35
3246 3402 2.935676 GCGGAGTAAAAAGGACCAGAGG 60.936 54.545 0.00 0.00 0.00 3.69
3247 3403 2.354805 CGGAGTAAAAAGGACCAGAGGG 60.355 54.545 0.00 0.00 41.29 4.30
3248 3404 2.910977 GGAGTAAAAAGGACCAGAGGGA 59.089 50.000 0.00 0.00 38.05 4.20
3249 3405 3.055021 GGAGTAAAAAGGACCAGAGGGAG 60.055 52.174 0.00 0.00 38.05 4.30
3250 3406 3.583526 GAGTAAAAAGGACCAGAGGGAGT 59.416 47.826 0.00 0.00 38.05 3.85
3251 3407 4.759953 AGTAAAAAGGACCAGAGGGAGTA 58.240 43.478 0.00 0.00 38.05 2.59
3252 3408 4.531339 AGTAAAAAGGACCAGAGGGAGTAC 59.469 45.833 0.00 0.00 38.05 2.73
3253 3409 3.277416 AAAAGGACCAGAGGGAGTACT 57.723 47.619 0.00 0.00 38.05 2.73
3254 3410 2.239681 AAGGACCAGAGGGAGTACTG 57.760 55.000 0.00 0.00 38.05 2.74
3277 3433 5.163703 TGTCAATGTAGTGTCAAAAACGCTT 60.164 36.000 0.00 0.00 46.62 4.68
3322 3478 8.084684 GGAATACATAAGAGCCAAATTTGATCC 58.915 37.037 19.86 7.44 0.00 3.36
3436 3592 2.871453 ACAATTAACCTCCCAAACGCT 58.129 42.857 0.00 0.00 0.00 5.07
3453 3609 3.633418 ACGCTAACTCTAACTGATCCCT 58.367 45.455 0.00 0.00 0.00 4.20
3531 3687 3.373565 GGGCTGGGGCGAAACAAG 61.374 66.667 0.00 0.00 39.81 3.16
3537 3693 0.178975 TGGGGCGAAACAAGAACCAT 60.179 50.000 0.00 0.00 0.00 3.55
3558 3714 6.279441 ACCATGGCCCCTTATATATTACCTTT 59.721 38.462 13.04 0.00 0.00 3.11
3560 3716 7.998964 CCATGGCCCCTTATATATTACCTTTAG 59.001 40.741 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.692257 ATCATCCATGAAGTCCGATCC 57.308 47.619 0.00 0.00 40.69 3.36
1 2 4.151335 CGAAATCATCCATGAAGTCCGATC 59.849 45.833 0.00 0.00 40.69 3.69
2 3 4.060900 CGAAATCATCCATGAAGTCCGAT 58.939 43.478 0.00 0.00 40.69 4.18
3 4 3.118775 ACGAAATCATCCATGAAGTCCGA 60.119 43.478 0.00 0.00 40.69 4.55
4 5 3.001634 CACGAAATCATCCATGAAGTCCG 59.998 47.826 0.00 0.00 40.69 4.79
5 6 4.191544 TCACGAAATCATCCATGAAGTCC 58.808 43.478 0.00 0.00 40.69 3.85
6 7 5.801350 TTCACGAAATCATCCATGAAGTC 57.199 39.130 0.00 0.00 40.69 3.01
7 8 5.939883 TCTTTCACGAAATCATCCATGAAGT 59.060 36.000 0.00 0.00 40.69 3.01
8 9 6.253746 GTCTTTCACGAAATCATCCATGAAG 58.746 40.000 0.00 0.00 40.69 3.02
9 10 5.123820 GGTCTTTCACGAAATCATCCATGAA 59.876 40.000 0.00 0.00 40.69 2.57
10 11 4.635765 GGTCTTTCACGAAATCATCCATGA 59.364 41.667 0.00 0.00 41.70 3.07
11 12 4.395854 TGGTCTTTCACGAAATCATCCATG 59.604 41.667 0.00 0.00 0.00 3.66
12 13 4.588899 TGGTCTTTCACGAAATCATCCAT 58.411 39.130 0.00 0.00 0.00 3.41
13 14 4.014569 TGGTCTTTCACGAAATCATCCA 57.985 40.909 0.00 0.00 0.00 3.41
14 15 4.215399 TGTTGGTCTTTCACGAAATCATCC 59.785 41.667 0.00 0.00 0.00 3.51
15 16 5.147162 GTGTTGGTCTTTCACGAAATCATC 58.853 41.667 0.00 0.00 0.00 2.92
16 17 4.023193 GGTGTTGGTCTTTCACGAAATCAT 60.023 41.667 0.00 0.00 33.51 2.45
17 18 3.314080 GGTGTTGGTCTTTCACGAAATCA 59.686 43.478 0.00 0.00 33.51 2.57
18 19 3.304458 GGGTGTTGGTCTTTCACGAAATC 60.304 47.826 0.00 0.00 33.51 2.17
19 20 2.621526 GGGTGTTGGTCTTTCACGAAAT 59.378 45.455 0.00 0.00 33.51 2.17
20 21 2.018515 GGGTGTTGGTCTTTCACGAAA 58.981 47.619 0.00 0.00 33.51 3.46
21 22 1.670791 GGGTGTTGGTCTTTCACGAA 58.329 50.000 0.00 0.00 33.51 3.85
22 23 0.179040 GGGGTGTTGGTCTTTCACGA 60.179 55.000 0.00 0.00 33.51 4.35
23 24 0.464735 TGGGGTGTTGGTCTTTCACG 60.465 55.000 0.00 0.00 33.51 4.35
24 25 1.886542 GATGGGGTGTTGGTCTTTCAC 59.113 52.381 0.00 0.00 0.00 3.18
25 26 1.203001 GGATGGGGTGTTGGTCTTTCA 60.203 52.381 0.00 0.00 0.00 2.69
26 27 1.203001 TGGATGGGGTGTTGGTCTTTC 60.203 52.381 0.00 0.00 0.00 2.62
27 28 0.856982 TGGATGGGGTGTTGGTCTTT 59.143 50.000 0.00 0.00 0.00 2.52
28 29 0.856982 TTGGATGGGGTGTTGGTCTT 59.143 50.000 0.00 0.00 0.00 3.01
29 30 0.856982 TTTGGATGGGGTGTTGGTCT 59.143 50.000 0.00 0.00 0.00 3.85
30 31 1.710816 TTTTGGATGGGGTGTTGGTC 58.289 50.000 0.00 0.00 0.00 4.02
31 32 2.414250 ATTTTGGATGGGGTGTTGGT 57.586 45.000 0.00 0.00 0.00 3.67
32 33 4.899352 TTTATTTTGGATGGGGTGTTGG 57.101 40.909 0.00 0.00 0.00 3.77
33 34 5.580297 CGATTTTATTTTGGATGGGGTGTTG 59.420 40.000 0.00 0.00 0.00 3.33
34 35 5.337975 CCGATTTTATTTTGGATGGGGTGTT 60.338 40.000 0.00 0.00 0.00 3.32
35 36 4.161377 CCGATTTTATTTTGGATGGGGTGT 59.839 41.667 0.00 0.00 0.00 4.16
36 37 4.161377 ACCGATTTTATTTTGGATGGGGTG 59.839 41.667 0.00 0.00 0.00 4.61
37 38 4.358214 ACCGATTTTATTTTGGATGGGGT 58.642 39.130 0.00 0.00 0.00 4.95
38 39 4.649218 AGACCGATTTTATTTTGGATGGGG 59.351 41.667 0.00 0.00 0.00 4.96
39 40 5.852282 AGACCGATTTTATTTTGGATGGG 57.148 39.130 0.00 0.00 0.00 4.00
40 41 7.319646 TCAAAGACCGATTTTATTTTGGATGG 58.680 34.615 0.00 0.00 0.00 3.51
41 42 8.810427 CATCAAAGACCGATTTTATTTTGGATG 58.190 33.333 0.00 0.00 0.00 3.51
42 43 8.748412 TCATCAAAGACCGATTTTATTTTGGAT 58.252 29.630 0.00 0.00 0.00 3.41
43 44 8.116651 TCATCAAAGACCGATTTTATTTTGGA 57.883 30.769 0.00 0.00 0.00 3.53
44 45 8.755696 TTCATCAAAGACCGATTTTATTTTGG 57.244 30.769 0.00 0.00 0.00 3.28
45 46 8.863049 CCTTCATCAAAGACCGATTTTATTTTG 58.137 33.333 0.00 0.00 37.12 2.44
46 47 7.545615 GCCTTCATCAAAGACCGATTTTATTTT 59.454 33.333 0.00 0.00 37.12 1.82
47 48 7.035612 GCCTTCATCAAAGACCGATTTTATTT 58.964 34.615 0.00 0.00 37.12 1.40
48 49 6.564328 GCCTTCATCAAAGACCGATTTTATT 58.436 36.000 0.00 0.00 37.12 1.40
49 50 5.220854 CGCCTTCATCAAAGACCGATTTTAT 60.221 40.000 0.00 0.00 37.12 1.40
50 51 4.094294 CGCCTTCATCAAAGACCGATTTTA 59.906 41.667 0.00 0.00 37.12 1.52
51 52 3.119849 CGCCTTCATCAAAGACCGATTTT 60.120 43.478 0.00 0.00 37.12 1.82
52 53 2.420022 CGCCTTCATCAAAGACCGATTT 59.580 45.455 0.00 0.00 37.12 2.17
53 54 2.009774 CGCCTTCATCAAAGACCGATT 58.990 47.619 0.00 0.00 37.12 3.34
54 55 1.656652 CGCCTTCATCAAAGACCGAT 58.343 50.000 0.00 0.00 37.12 4.18
55 56 0.391130 CCGCCTTCATCAAAGACCGA 60.391 55.000 0.00 0.00 37.12 4.69
56 57 0.391130 TCCGCCTTCATCAAAGACCG 60.391 55.000 0.00 0.00 37.12 4.79
57 58 2.044123 ATCCGCCTTCATCAAAGACC 57.956 50.000 0.00 0.00 37.12 3.85
58 59 2.098117 CCAATCCGCCTTCATCAAAGAC 59.902 50.000 0.00 0.00 37.12 3.01
59 60 2.290896 ACCAATCCGCCTTCATCAAAGA 60.291 45.455 0.00 0.00 37.12 2.52
60 61 2.094675 ACCAATCCGCCTTCATCAAAG 58.905 47.619 0.00 0.00 34.52 2.77
61 62 2.214376 ACCAATCCGCCTTCATCAAA 57.786 45.000 0.00 0.00 0.00 2.69
62 63 1.818060 CAACCAATCCGCCTTCATCAA 59.182 47.619 0.00 0.00 0.00 2.57
63 64 1.462616 CAACCAATCCGCCTTCATCA 58.537 50.000 0.00 0.00 0.00 3.07
64 65 0.740737 CCAACCAATCCGCCTTCATC 59.259 55.000 0.00 0.00 0.00 2.92
65 66 0.684153 CCCAACCAATCCGCCTTCAT 60.684 55.000 0.00 0.00 0.00 2.57
66 67 1.304052 CCCAACCAATCCGCCTTCA 60.304 57.895 0.00 0.00 0.00 3.02
67 68 2.052104 CCCCAACCAATCCGCCTTC 61.052 63.158 0.00 0.00 0.00 3.46
68 69 2.037208 CCCCAACCAATCCGCCTT 59.963 61.111 0.00 0.00 0.00 4.35
69 70 3.264845 ACCCCAACCAATCCGCCT 61.265 61.111 0.00 0.00 0.00 5.52
70 71 3.068064 CACCCCAACCAATCCGCC 61.068 66.667 0.00 0.00 0.00 6.13
71 72 3.068064 CCACCCCAACCAATCCGC 61.068 66.667 0.00 0.00 0.00 5.54
72 73 2.362375 CCCACCCCAACCAATCCG 60.362 66.667 0.00 0.00 0.00 4.18
73 74 1.609210 CACCCACCCCAACCAATCC 60.609 63.158 0.00 0.00 0.00 3.01
74 75 0.898326 GTCACCCACCCCAACCAATC 60.898 60.000 0.00 0.00 0.00 2.67
75 76 1.155155 GTCACCCACCCCAACCAAT 59.845 57.895 0.00 0.00 0.00 3.16
76 77 1.875422 TTGTCACCCACCCCAACCAA 61.875 55.000 0.00 0.00 0.00 3.67
77 78 2.291402 CTTGTCACCCACCCCAACCA 62.291 60.000 0.00 0.00 0.00 3.67
78 79 1.530655 CTTGTCACCCACCCCAACC 60.531 63.158 0.00 0.00 0.00 3.77
79 80 0.822121 GACTTGTCACCCACCCCAAC 60.822 60.000 0.00 0.00 0.00 3.77
80 81 1.534697 GACTTGTCACCCACCCCAA 59.465 57.895 0.00 0.00 0.00 4.12
81 82 2.457323 GGACTTGTCACCCACCCCA 61.457 63.158 3.08 0.00 0.00 4.96
82 83 2.434774 GGACTTGTCACCCACCCC 59.565 66.667 3.08 0.00 0.00 4.95
83 84 2.032071 CGGACTTGTCACCCACCC 59.968 66.667 3.08 0.00 0.00 4.61
84 85 2.668550 GCGGACTTGTCACCCACC 60.669 66.667 3.08 0.00 0.00 4.61
85 86 1.507141 CTTGCGGACTTGTCACCCAC 61.507 60.000 3.08 0.00 0.00 4.61
86 87 1.227823 CTTGCGGACTTGTCACCCA 60.228 57.895 3.08 0.00 0.00 4.51
87 88 0.534203 TTCTTGCGGACTTGTCACCC 60.534 55.000 3.08 0.00 0.00 4.61
88 89 0.868406 CTTCTTGCGGACTTGTCACC 59.132 55.000 3.08 0.00 0.00 4.02
89 90 0.868406 CCTTCTTGCGGACTTGTCAC 59.132 55.000 3.08 0.00 0.00 3.67
90 91 0.250295 CCCTTCTTGCGGACTTGTCA 60.250 55.000 3.08 0.00 0.00 3.58
91 92 0.250338 ACCCTTCTTGCGGACTTGTC 60.250 55.000 0.00 0.00 0.00 3.18
92 93 0.250338 GACCCTTCTTGCGGACTTGT 60.250 55.000 0.00 0.00 0.00 3.16
93 94 0.250295 TGACCCTTCTTGCGGACTTG 60.250 55.000 0.00 0.00 0.00 3.16
94 95 0.250338 GTGACCCTTCTTGCGGACTT 60.250 55.000 0.00 0.00 0.00 3.01
95 96 1.371558 GTGACCCTTCTTGCGGACT 59.628 57.895 0.00 0.00 0.00 3.85
96 97 1.671379 GGTGACCCTTCTTGCGGAC 60.671 63.158 0.00 0.00 0.00 4.79
97 98 2.747686 GGTGACCCTTCTTGCGGA 59.252 61.111 0.00 0.00 0.00 5.54
109 110 4.772886 AAGGGTATGTCAATAGGGTGAC 57.227 45.455 0.00 0.00 46.74 3.67
110 111 4.080015 CCAAAGGGTATGTCAATAGGGTGA 60.080 45.833 0.00 0.00 0.00 4.02
111 112 4.207165 CCAAAGGGTATGTCAATAGGGTG 58.793 47.826 0.00 0.00 0.00 4.61
112 113 3.372675 GCCAAAGGGTATGTCAATAGGGT 60.373 47.826 0.00 0.00 36.17 4.34
113 114 3.222603 GCCAAAGGGTATGTCAATAGGG 58.777 50.000 0.00 0.00 36.17 3.53
114 115 3.222603 GGCCAAAGGGTATGTCAATAGG 58.777 50.000 0.00 0.00 36.17 2.57
115 116 3.885297 CTGGCCAAAGGGTATGTCAATAG 59.115 47.826 7.01 0.00 36.17 1.73
116 117 3.372566 CCTGGCCAAAGGGTATGTCAATA 60.373 47.826 7.01 0.00 36.17 1.90
117 118 2.624029 CCTGGCCAAAGGGTATGTCAAT 60.624 50.000 7.01 0.00 36.17 2.57
118 119 1.272425 CCTGGCCAAAGGGTATGTCAA 60.272 52.381 7.01 0.00 36.17 3.18
119 120 0.331278 CCTGGCCAAAGGGTATGTCA 59.669 55.000 7.01 0.00 36.17 3.58
120 121 0.623723 TCCTGGCCAAAGGGTATGTC 59.376 55.000 7.01 0.00 37.96 3.06
121 122 1.215423 GATCCTGGCCAAAGGGTATGT 59.785 52.381 7.01 0.00 37.96 2.29
122 123 1.479389 GGATCCTGGCCAAAGGGTATG 60.479 57.143 7.01 0.00 37.96 2.39
123 124 0.853530 GGATCCTGGCCAAAGGGTAT 59.146 55.000 7.01 0.57 37.96 2.73
124 125 0.253630 AGGATCCTGGCCAAAGGGTA 60.254 55.000 15.29 0.00 37.96 3.69
125 126 1.544917 AGGATCCTGGCCAAAGGGT 60.545 57.895 15.29 0.13 37.96 4.34
126 127 1.076485 CAGGATCCTGGCCAAAGGG 60.076 63.158 31.14 4.72 40.17 3.95
127 128 0.332632 TTCAGGATCCTGGCCAAAGG 59.667 55.000 35.95 12.99 43.75 3.11
128 129 1.283029 TCTTCAGGATCCTGGCCAAAG 59.717 52.381 35.95 29.84 43.75 2.77
129 130 1.371467 TCTTCAGGATCCTGGCCAAA 58.629 50.000 35.95 23.47 43.75 3.28
130 131 1.492176 GATCTTCAGGATCCTGGCCAA 59.508 52.381 35.95 23.79 43.65 4.52
131 132 1.135094 GATCTTCAGGATCCTGGCCA 58.865 55.000 35.95 22.07 43.65 5.36
153 154 2.405357 CCGCTCGATCATCGTGATTAAC 59.595 50.000 13.22 0.00 41.35 2.01
154 155 2.292292 TCCGCTCGATCATCGTGATTAA 59.708 45.455 13.22 0.00 41.35 1.40
155 156 1.877443 TCCGCTCGATCATCGTGATTA 59.123 47.619 13.22 0.00 41.35 1.75
156 157 0.668535 TCCGCTCGATCATCGTGATT 59.331 50.000 13.22 0.00 41.35 2.57
157 158 0.668535 TTCCGCTCGATCATCGTGAT 59.331 50.000 13.22 0.91 41.35 3.06
158 159 0.248498 GTTCCGCTCGATCATCGTGA 60.248 55.000 13.22 0.80 41.35 4.35
159 160 0.248661 AGTTCCGCTCGATCATCGTG 60.249 55.000 7.00 5.77 41.35 4.35
160 161 0.248661 CAGTTCCGCTCGATCATCGT 60.249 55.000 7.00 0.00 41.35 3.73
161 162 0.936764 CCAGTTCCGCTCGATCATCG 60.937 60.000 0.00 0.00 42.10 3.84
162 163 1.218230 GCCAGTTCCGCTCGATCATC 61.218 60.000 0.00 0.00 0.00 2.92
163 164 1.227380 GCCAGTTCCGCTCGATCAT 60.227 57.895 0.00 0.00 0.00 2.45
164 165 2.184322 GCCAGTTCCGCTCGATCA 59.816 61.111 0.00 0.00 0.00 2.92
165 166 2.956964 CGCCAGTTCCGCTCGATC 60.957 66.667 0.00 0.00 0.00 3.69
166 167 4.514577 CCGCCAGTTCCGCTCGAT 62.515 66.667 0.00 0.00 0.00 3.59
168 169 4.514577 ATCCGCCAGTTCCGCTCG 62.515 66.667 0.00 0.00 0.00 5.03
169 170 2.892425 CATCCGCCAGTTCCGCTC 60.892 66.667 0.00 0.00 0.00 5.03
170 171 3.665675 GACATCCGCCAGTTCCGCT 62.666 63.158 0.00 0.00 0.00 5.52
171 172 3.195698 GACATCCGCCAGTTCCGC 61.196 66.667 0.00 0.00 0.00 5.54
172 173 2.511600 GGACATCCGCCAGTTCCG 60.512 66.667 0.00 0.00 0.00 4.30
190 191 3.658422 AAAGGTTCCGGGGGCCTC 61.658 66.667 0.84 0.00 0.00 4.70
191 192 3.979497 CAAAGGTTCCGGGGGCCT 61.979 66.667 0.84 3.83 0.00 5.19
194 195 2.622447 ATCCCAAAGGTTCCGGGGG 61.622 63.158 0.00 1.68 41.11 5.40
195 196 1.379843 CATCCCAAAGGTTCCGGGG 60.380 63.158 0.00 9.07 40.68 5.73
196 197 0.394352 CTCATCCCAAAGGTTCCGGG 60.394 60.000 0.00 0.00 41.76 5.73
197 198 1.032114 GCTCATCCCAAAGGTTCCGG 61.032 60.000 0.00 0.00 0.00 5.14
198 199 1.032114 GGCTCATCCCAAAGGTTCCG 61.032 60.000 0.00 0.00 0.00 4.30
199 200 0.039618 TGGCTCATCCCAAAGGTTCC 59.960 55.000 0.00 0.00 30.32 3.62
200 201 1.177401 GTGGCTCATCCCAAAGGTTC 58.823 55.000 0.00 0.00 36.46 3.62
201 202 0.779997 AGTGGCTCATCCCAAAGGTT 59.220 50.000 0.00 0.00 36.46 3.50
202 203 1.561542 CTAGTGGCTCATCCCAAAGGT 59.438 52.381 0.00 0.00 36.46 3.50
203 204 1.748591 GCTAGTGGCTCATCCCAAAGG 60.749 57.143 0.00 0.00 36.46 3.11
204 205 1.065199 TGCTAGTGGCTCATCCCAAAG 60.065 52.381 0.00 0.00 42.39 2.77
205 206 0.991146 TGCTAGTGGCTCATCCCAAA 59.009 50.000 0.00 0.00 42.39 3.28
206 207 0.991146 TTGCTAGTGGCTCATCCCAA 59.009 50.000 0.00 0.00 42.39 4.12
207 208 0.991146 TTTGCTAGTGGCTCATCCCA 59.009 50.000 0.00 0.00 42.39 4.37
208 209 1.065126 AGTTTGCTAGTGGCTCATCCC 60.065 52.381 0.00 0.00 42.39 3.85
209 210 2.409948 AGTTTGCTAGTGGCTCATCC 57.590 50.000 0.00 0.00 42.39 3.51
210 211 5.178438 GCTAATAGTTTGCTAGTGGCTCATC 59.822 44.000 0.00 0.00 43.32 2.92
211 212 5.059833 GCTAATAGTTTGCTAGTGGCTCAT 58.940 41.667 0.00 0.00 43.32 2.90
212 213 4.442706 GCTAATAGTTTGCTAGTGGCTCA 58.557 43.478 0.00 0.00 43.32 4.26
213 214 3.810386 GGCTAATAGTTTGCTAGTGGCTC 59.190 47.826 9.48 0.00 45.08 4.70
220 221 8.287439 TGCTTTATTTGGCTAATAGTTTGCTA 57.713 30.769 1.87 0.00 30.62 3.49
256 257 4.260170 ACGTGTAACAAACTGGTAAACCA 58.740 39.130 1.13 1.13 39.87 3.67
437 446 4.994907 AAAACCGCTACTCCTTTGTTTT 57.005 36.364 0.00 0.00 32.72 2.43
465 474 3.632604 TGGAGATGACAACGATCCTAGAC 59.367 47.826 0.00 0.00 0.00 2.59
486 495 1.330521 CAATTTCCCACCGATAGCGTG 59.669 52.381 0.00 0.00 37.13 5.34
514 523 6.442541 TGTCCGGGTTAATATATGTTCCAT 57.557 37.500 0.00 0.00 0.00 3.41
545 554 4.159244 AGAGAAGGATGCTAGTCTACGT 57.841 45.455 0.00 0.00 0.00 3.57
560 569 6.583912 TTTGTGTCGTTTTCAGTAGAGAAG 57.416 37.500 0.00 0.00 0.00 2.85
584 593 3.780804 TTGGTGTGTTGTAGTAGCCAT 57.219 42.857 0.00 0.00 0.00 4.40
633 648 7.432869 TGAATAAAGGGTGAATTTGTGTTCTG 58.567 34.615 0.00 0.00 0.00 3.02
649 664 3.863424 ACGTATGTGTCGCTGAATAAAGG 59.137 43.478 0.00 0.00 0.00 3.11
663 685 5.444218 GCCTTTAGTTTCTCGAACGTATGTG 60.444 44.000 0.00 0.00 43.20 3.21
695 717 2.235155 TGCATGCATGGCTCTCAAAATT 59.765 40.909 27.34 0.00 0.00 1.82
697 719 1.258676 TGCATGCATGGCTCTCAAAA 58.741 45.000 27.34 0.61 0.00 2.44
808 854 5.228635 CGTTGCTATCATGTGAGAAAAATGC 59.771 40.000 0.00 0.00 0.00 3.56
845 891 2.037772 CCTCAGATTAATAGCGCCCAGT 59.962 50.000 2.29 0.00 0.00 4.00
868 916 4.744570 CACGCTCTAAATACTGGTCTTCA 58.255 43.478 0.00 0.00 0.00 3.02
893 941 3.050275 GCCTTCGCAACTCGCCTT 61.050 61.111 0.00 0.00 37.30 4.35
894 942 4.314440 TGCCTTCGCAACTCGCCT 62.314 61.111 0.00 0.00 43.74 5.52
895 943 3.793144 CTGCCTTCGCAACTCGCC 61.793 66.667 0.00 0.00 46.66 5.54
896 944 4.451652 GCTGCCTTCGCAACTCGC 62.452 66.667 0.00 0.00 46.66 5.03
897 945 4.139420 CGCTGCCTTCGCAACTCG 62.139 66.667 0.00 0.00 46.66 4.18
898 946 3.793144 CCGCTGCCTTCGCAACTC 61.793 66.667 0.00 0.00 46.66 3.01
899 947 4.626081 ACCGCTGCCTTCGCAACT 62.626 61.111 0.00 0.00 46.66 3.16
900 948 4.389576 CACCGCTGCCTTCGCAAC 62.390 66.667 0.00 0.00 46.66 4.17
926 974 1.136984 GACGTGTCCTGCTCCTACG 59.863 63.158 0.00 0.00 40.30 3.51
928 976 1.002990 TCGACGTGTCCTGCTCCTA 60.003 57.895 0.00 0.00 0.00 2.94
972 1027 1.732117 TGAAACGGGGGAGGAAGTTA 58.268 50.000 0.00 0.00 0.00 2.24
987 1042 4.898265 TCCTTGGACATGGTGAAATTGAAA 59.102 37.500 0.00 0.00 0.00 2.69
988 1043 4.478203 TCCTTGGACATGGTGAAATTGAA 58.522 39.130 0.00 0.00 0.00 2.69
989 1044 4.111255 TCCTTGGACATGGTGAAATTGA 57.889 40.909 0.00 0.00 0.00 2.57
990 1045 4.221262 ACATCCTTGGACATGGTGAAATTG 59.779 41.667 0.00 0.00 0.00 2.32
991 1046 4.221262 CACATCCTTGGACATGGTGAAATT 59.779 41.667 0.00 0.00 0.00 1.82
992 1047 3.765511 CACATCCTTGGACATGGTGAAAT 59.234 43.478 0.00 0.00 0.00 2.17
1005 1060 4.776322 TCGGCGGCCACATCCTTG 62.776 66.667 20.71 0.00 0.00 3.61
1154 1209 0.576798 CACATTCGCGCGTATCACAT 59.423 50.000 30.98 10.29 0.00 3.21
1168 1223 7.031372 CACAAGAATGTTAATAGCTGCACATT 58.969 34.615 13.13 13.13 41.51 2.71
1272 1381 0.943835 TCTGCGTGTCCGTGATGTTG 60.944 55.000 0.00 0.00 36.15 3.33
1305 1414 3.200483 CGAGAAGATGTTGATGATGCCA 58.800 45.455 0.00 0.00 0.00 4.92
1352 1461 3.499050 CGATCCAGTCGGACGTCT 58.501 61.111 16.46 0.00 46.79 4.18
1557 1666 2.679287 ACCTCCGGGAAGGACGTC 60.679 66.667 15.90 7.13 45.98 4.34
1726 1835 2.267006 CTGCATGACGAGCCACCT 59.733 61.111 0.00 0.00 0.00 4.00
2199 2311 3.661131 AGCGTCACGAGCGACACT 61.661 61.111 0.00 0.00 40.04 3.55
2653 2782 9.596402 ACATACAGTGTTGACTCACTACTGAGC 62.596 44.444 20.77 0.00 45.37 4.26
2679 2808 0.744874 GCCGCTGATCAGTAGTACCA 59.255 55.000 23.38 0.00 0.00 3.25
2690 2819 2.033448 TTTTGGACGGCCGCTGAT 59.967 55.556 28.58 4.99 36.79 2.90
2691 2820 2.668212 CTTTTGGACGGCCGCTGA 60.668 61.111 28.58 5.61 36.79 4.26
2692 2821 4.404654 GCTTTTGGACGGCCGCTG 62.405 66.667 28.58 8.60 36.79 5.18
2698 2837 2.554032 AGTCATTGAAGCTTTTGGACGG 59.446 45.455 0.00 0.00 0.00 4.79
2716 2855 7.708051 TCACAAGTATGAATACTCAGCTAGTC 58.292 38.462 3.51 0.00 42.47 2.59
2726 2865 8.116753 CGAATCCAAACTCACAAGTATGAATAC 58.883 37.037 0.00 0.00 33.48 1.89
2752 2891 1.141665 GCATCCATTTTGACCGGCC 59.858 57.895 0.00 0.00 0.00 6.13
2826 2978 6.631238 CGTCTTTTAACATTTGTGTAGTGTGG 59.369 38.462 0.00 0.00 0.00 4.17
2869 3022 9.881529 CTTATAGTCGTTGGTTTATACTCTCTC 57.118 37.037 0.00 0.00 0.00 3.20
2871 3024 9.881529 CTCTTATAGTCGTTGGTTTATACTCTC 57.118 37.037 0.00 0.00 0.00 3.20
2872 3025 8.351461 GCTCTTATAGTCGTTGGTTTATACTCT 58.649 37.037 0.00 0.00 0.00 3.24
2873 3026 7.594386 GGCTCTTATAGTCGTTGGTTTATACTC 59.406 40.741 0.00 0.00 0.00 2.59
2875 3028 7.205297 TGGCTCTTATAGTCGTTGGTTTATAC 58.795 38.462 0.00 0.00 29.81 1.47
2876 3029 7.350744 TGGCTCTTATAGTCGTTGGTTTATA 57.649 36.000 0.00 0.00 29.81 0.98
2877 3030 6.229936 TGGCTCTTATAGTCGTTGGTTTAT 57.770 37.500 0.00 0.00 29.81 1.40
2878 3031 5.664294 TGGCTCTTATAGTCGTTGGTTTA 57.336 39.130 0.00 0.00 29.81 2.01
2879 3032 4.546829 TGGCTCTTATAGTCGTTGGTTT 57.453 40.909 0.00 0.00 29.81 3.27
2881 3034 4.546829 TTTGGCTCTTATAGTCGTTGGT 57.453 40.909 0.00 0.00 29.81 3.67
2882 3035 6.093495 TCAAATTTGGCTCTTATAGTCGTTGG 59.907 38.462 17.90 0.00 29.81 3.77
2884 3037 7.770897 AGATCAAATTTGGCTCTTATAGTCGTT 59.229 33.333 17.90 0.00 29.81 3.85
2886 3039 7.721286 AGATCAAATTTGGCTCTTATAGTCG 57.279 36.000 17.90 0.00 29.81 4.18
2887 3040 9.113838 TGAAGATCAAATTTGGCTCTTATAGTC 57.886 33.333 24.50 17.19 33.67 2.59
2889 3042 9.118300 AGTGAAGATCAAATTTGGCTCTTATAG 57.882 33.333 24.50 0.00 33.67 1.31
2914 3070 8.975439 ACAAGTACGAGTATTCAACAAAGTTAG 58.025 33.333 0.00 0.00 0.00 2.34
2919 3075 7.956420 ATCACAAGTACGAGTATTCAACAAA 57.044 32.000 0.00 0.00 0.00 2.83
2920 3076 7.148869 CGAATCACAAGTACGAGTATTCAACAA 60.149 37.037 0.00 0.00 0.00 2.83
3070 3226 6.127758 TGGCATTATGAGCGTTGATACTTTTT 60.128 34.615 0.00 0.00 0.00 1.94
3071 3227 5.356751 TGGCATTATGAGCGTTGATACTTTT 59.643 36.000 0.00 0.00 0.00 2.27
3072 3228 4.881273 TGGCATTATGAGCGTTGATACTTT 59.119 37.500 0.00 0.00 0.00 2.66
3073 3229 4.450976 TGGCATTATGAGCGTTGATACTT 58.549 39.130 0.00 0.00 0.00 2.24
3074 3230 4.071961 TGGCATTATGAGCGTTGATACT 57.928 40.909 0.00 0.00 0.00 2.12
3075 3231 4.811555 TTGGCATTATGAGCGTTGATAC 57.188 40.909 0.00 0.00 0.00 2.24
3076 3232 5.530543 TGATTTGGCATTATGAGCGTTGATA 59.469 36.000 0.00 0.00 0.00 2.15
3077 3233 4.338964 TGATTTGGCATTATGAGCGTTGAT 59.661 37.500 0.00 0.00 0.00 2.57
3078 3234 3.693578 TGATTTGGCATTATGAGCGTTGA 59.306 39.130 0.00 0.00 0.00 3.18
3079 3235 4.031418 TGATTTGGCATTATGAGCGTTG 57.969 40.909 0.00 0.00 0.00 4.10
3080 3236 4.717233 TTGATTTGGCATTATGAGCGTT 57.283 36.364 0.00 0.00 0.00 4.84
3081 3237 4.924305 ATTGATTTGGCATTATGAGCGT 57.076 36.364 0.00 0.00 0.00 5.07
3082 3238 6.864685 ACAATATTGATTTGGCATTATGAGCG 59.135 34.615 22.16 0.00 0.00 5.03
3083 3239 8.597662 AACAATATTGATTTGGCATTATGAGC 57.402 30.769 22.16 0.00 0.00 4.26
3171 3327 9.383519 TGCAAACTTTGACCAAATAAACATTAA 57.616 25.926 5.65 0.00 0.00 1.40
3172 3328 8.948631 TGCAAACTTTGACCAAATAAACATTA 57.051 26.923 5.65 0.00 0.00 1.90
3173 3329 7.856145 TGCAAACTTTGACCAAATAAACATT 57.144 28.000 5.65 0.00 0.00 2.71
3174 3330 7.768120 TCTTGCAAACTTTGACCAAATAAACAT 59.232 29.630 5.65 0.00 0.00 2.71
3175 3331 7.099764 TCTTGCAAACTTTGACCAAATAAACA 58.900 30.769 5.65 0.00 0.00 2.83
3176 3332 7.532682 TCTTGCAAACTTTGACCAAATAAAC 57.467 32.000 5.65 0.00 0.00 2.01
3177 3333 8.729805 AATCTTGCAAACTTTGACCAAATAAA 57.270 26.923 5.65 0.00 0.00 1.40
3178 3334 8.610896 CAAATCTTGCAAACTTTGACCAAATAA 58.389 29.630 20.70 0.00 29.41 1.40
3179 3335 7.984050 TCAAATCTTGCAAACTTTGACCAAATA 59.016 29.630 22.60 7.72 31.31 1.40
3180 3336 6.822676 TCAAATCTTGCAAACTTTGACCAAAT 59.177 30.769 22.60 0.00 31.31 2.32
3181 3337 6.091986 GTCAAATCTTGCAAACTTTGACCAAA 59.908 34.615 32.16 15.50 42.14 3.28
3182 3338 5.580297 GTCAAATCTTGCAAACTTTGACCAA 59.420 36.000 32.16 15.74 42.14 3.67
3183 3339 5.105392 AGTCAAATCTTGCAAACTTTGACCA 60.105 36.000 34.92 17.99 45.38 4.02
3184 3340 5.351458 AGTCAAATCTTGCAAACTTTGACC 58.649 37.500 34.92 25.88 45.38 4.02
3185 3341 6.531240 TCAAGTCAAATCTTGCAAACTTTGAC 59.469 34.615 33.51 33.51 45.02 3.18
3186 3342 6.629128 TCAAGTCAAATCTTGCAAACTTTGA 58.371 32.000 22.60 22.60 42.90 2.69
3187 3343 6.890663 TCAAGTCAAATCTTGCAAACTTTG 57.109 33.333 19.84 19.84 42.90 2.77
3188 3344 8.196771 TGTATCAAGTCAAATCTTGCAAACTTT 58.803 29.630 8.81 4.95 42.90 2.66
3189 3345 7.715657 TGTATCAAGTCAAATCTTGCAAACTT 58.284 30.769 0.00 3.21 42.90 2.66
3190 3346 7.275888 TGTATCAAGTCAAATCTTGCAAACT 57.724 32.000 0.00 0.00 42.90 2.66
3191 3347 7.928908 TTGTATCAAGTCAAATCTTGCAAAC 57.071 32.000 0.00 0.00 42.90 2.93
3201 3357 8.325282 CGCGTATTAGATTTGTATCAAGTCAAA 58.675 33.333 0.00 0.00 37.82 2.69
3202 3358 7.042992 CCGCGTATTAGATTTGTATCAAGTCAA 60.043 37.037 4.92 2.05 32.95 3.18
3203 3359 6.419710 CCGCGTATTAGATTTGTATCAAGTCA 59.580 38.462 4.92 0.00 32.95 3.41
3204 3360 6.639686 TCCGCGTATTAGATTTGTATCAAGTC 59.360 38.462 4.92 0.00 32.95 3.01
3205 3361 6.509656 TCCGCGTATTAGATTTGTATCAAGT 58.490 36.000 4.92 0.00 32.95 3.16
3206 3362 6.641314 ACTCCGCGTATTAGATTTGTATCAAG 59.359 38.462 4.92 0.00 32.95 3.02
3207 3363 6.509656 ACTCCGCGTATTAGATTTGTATCAA 58.490 36.000 4.92 0.00 32.95 2.57
3208 3364 6.080648 ACTCCGCGTATTAGATTTGTATCA 57.919 37.500 4.92 0.00 32.95 2.15
3209 3365 8.511465 TTTACTCCGCGTATTAGATTTGTATC 57.489 34.615 4.92 0.00 0.00 2.24
3210 3366 8.876275 TTTTACTCCGCGTATTAGATTTGTAT 57.124 30.769 4.92 0.00 0.00 2.29
3211 3367 8.700722 TTTTTACTCCGCGTATTAGATTTGTA 57.299 30.769 4.92 0.00 0.00 2.41
3212 3368 7.201582 CCTTTTTACTCCGCGTATTAGATTTGT 60.202 37.037 4.92 0.00 0.00 2.83
3213 3369 7.010738 TCCTTTTTACTCCGCGTATTAGATTTG 59.989 37.037 4.92 0.00 0.00 2.32
3214 3370 7.010830 GTCCTTTTTACTCCGCGTATTAGATTT 59.989 37.037 4.92 0.00 0.00 2.17
3215 3371 6.478016 GTCCTTTTTACTCCGCGTATTAGATT 59.522 38.462 4.92 0.00 0.00 2.40
3216 3372 5.981915 GTCCTTTTTACTCCGCGTATTAGAT 59.018 40.000 4.92 0.00 0.00 1.98
3217 3373 5.343249 GTCCTTTTTACTCCGCGTATTAGA 58.657 41.667 4.92 0.00 0.00 2.10
3218 3374 4.505556 GGTCCTTTTTACTCCGCGTATTAG 59.494 45.833 4.92 0.00 0.00 1.73
3219 3375 4.081752 TGGTCCTTTTTACTCCGCGTATTA 60.082 41.667 4.92 0.00 0.00 0.98
3220 3376 3.264947 GGTCCTTTTTACTCCGCGTATT 58.735 45.455 4.92 0.00 0.00 1.89
3221 3377 2.234414 TGGTCCTTTTTACTCCGCGTAT 59.766 45.455 4.92 0.00 0.00 3.06
3222 3378 1.617850 TGGTCCTTTTTACTCCGCGTA 59.382 47.619 4.92 0.00 0.00 4.42
3223 3379 0.393820 TGGTCCTTTTTACTCCGCGT 59.606 50.000 4.92 0.00 0.00 6.01
3224 3380 1.076332 CTGGTCCTTTTTACTCCGCG 58.924 55.000 0.00 0.00 0.00 6.46
3225 3381 2.347731 CTCTGGTCCTTTTTACTCCGC 58.652 52.381 0.00 0.00 0.00 5.54
3226 3382 2.354805 CCCTCTGGTCCTTTTTACTCCG 60.355 54.545 0.00 0.00 0.00 4.63
3227 3383 2.910977 TCCCTCTGGTCCTTTTTACTCC 59.089 50.000 0.00 0.00 0.00 3.85
3228 3384 3.583526 ACTCCCTCTGGTCCTTTTTACTC 59.416 47.826 0.00 0.00 0.00 2.59
3229 3385 3.599348 ACTCCCTCTGGTCCTTTTTACT 58.401 45.455 0.00 0.00 0.00 2.24
3230 3386 4.531339 AGTACTCCCTCTGGTCCTTTTTAC 59.469 45.833 0.00 0.00 0.00 2.01
3231 3387 4.530946 CAGTACTCCCTCTGGTCCTTTTTA 59.469 45.833 0.00 0.00 0.00 1.52
3232 3388 3.328050 CAGTACTCCCTCTGGTCCTTTTT 59.672 47.826 0.00 0.00 0.00 1.94
3233 3389 2.907042 CAGTACTCCCTCTGGTCCTTTT 59.093 50.000 0.00 0.00 0.00 2.27
3234 3390 2.158143 ACAGTACTCCCTCTGGTCCTTT 60.158 50.000 0.00 0.00 36.17 3.11
3235 3391 1.433592 ACAGTACTCCCTCTGGTCCTT 59.566 52.381 0.00 0.00 36.17 3.36
3236 3392 1.006162 GACAGTACTCCCTCTGGTCCT 59.994 57.143 0.00 0.00 36.17 3.85
3237 3393 1.272536 TGACAGTACTCCCTCTGGTCC 60.273 57.143 0.00 0.00 36.17 4.46
3238 3394 2.217510 TGACAGTACTCCCTCTGGTC 57.782 55.000 0.00 0.00 36.17 4.02
3239 3395 2.696526 TTGACAGTACTCCCTCTGGT 57.303 50.000 0.00 0.00 36.17 4.00
3240 3396 2.834549 ACATTGACAGTACTCCCTCTGG 59.165 50.000 0.00 0.00 36.17 3.86
3241 3397 4.707448 ACTACATTGACAGTACTCCCTCTG 59.293 45.833 0.00 0.00 37.65 3.35
3242 3398 4.707448 CACTACATTGACAGTACTCCCTCT 59.293 45.833 0.00 0.00 0.00 3.69
3243 3399 4.463186 ACACTACATTGACAGTACTCCCTC 59.537 45.833 0.00 0.00 0.00 4.30
3244 3400 4.417437 ACACTACATTGACAGTACTCCCT 58.583 43.478 0.00 0.00 0.00 4.20
3245 3401 4.219944 TGACACTACATTGACAGTACTCCC 59.780 45.833 0.00 0.00 0.00 4.30
3246 3402 5.386958 TGACACTACATTGACAGTACTCC 57.613 43.478 0.00 0.00 0.00 3.85
3247 3403 7.709269 TTTTGACACTACATTGACAGTACTC 57.291 36.000 0.00 0.00 0.00 2.59
3248 3404 7.254319 CGTTTTTGACACTACATTGACAGTACT 60.254 37.037 0.00 0.00 0.00 2.73
3249 3405 6.844279 CGTTTTTGACACTACATTGACAGTAC 59.156 38.462 0.00 0.00 0.00 2.73
3250 3406 6.510478 GCGTTTTTGACACTACATTGACAGTA 60.510 38.462 0.00 0.00 0.00 2.74
3251 3407 5.729454 GCGTTTTTGACACTACATTGACAGT 60.729 40.000 0.00 0.00 0.00 3.55
3252 3408 4.670621 GCGTTTTTGACACTACATTGACAG 59.329 41.667 0.00 0.00 0.00 3.51
3253 3409 4.334203 AGCGTTTTTGACACTACATTGACA 59.666 37.500 0.00 0.00 0.00 3.58
3254 3410 4.844267 AGCGTTTTTGACACTACATTGAC 58.156 39.130 0.00 0.00 0.00 3.18
3277 3433 6.993288 ATTCCCTCCATCCCATCATATAAA 57.007 37.500 0.00 0.00 0.00 1.40
3374 3530 0.108615 AAATCTGACTCTGACGGGCG 60.109 55.000 0.00 0.00 0.00 6.13
3436 3592 5.773680 CCGGATAAGGGATCAGTTAGAGTTA 59.226 44.000 0.00 0.00 36.12 2.24
3522 3678 0.388520 GGCCATGGTTCTTGTTTCGC 60.389 55.000 14.67 0.00 0.00 4.70
3523 3679 0.243636 GGGCCATGGTTCTTGTTTCG 59.756 55.000 14.67 0.00 0.00 3.46
3531 3687 6.069029 AGGTAATATATAAGGGGCCATGGTTC 60.069 42.308 14.67 6.14 0.00 3.62
3537 3693 8.528543 AACTAAAGGTAATATATAAGGGGCCA 57.471 34.615 4.39 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.