Multiple sequence alignment - TraesCS4B01G262700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G262700 chr4B 100.000 4596 0 0 1 4596 532442554 532437959 0.000000e+00 8488.0
1 TraesCS4B01G262700 chr4B 89.313 131 14 0 2433 2563 532440083 532439953 1.020000e-36 165.0
2 TraesCS4B01G262700 chr4B 89.313 131 14 0 2472 2602 532440122 532439992 1.020000e-36 165.0
3 TraesCS4B01G262700 chr4B 91.489 94 8 0 2431 2524 532440046 532439953 3.730000e-26 130.0
4 TraesCS4B01G262700 chr4B 91.489 94 8 0 2509 2602 532440124 532440031 3.730000e-26 130.0
5 TraesCS4B01G262700 chr4A 88.956 2490 157 49 157 2563 35184543 35182089 0.000000e+00 2966.0
6 TraesCS4B01G262700 chr4A 86.834 957 60 40 2472 3367 35182219 35181268 0.000000e+00 1009.0
7 TraesCS4B01G262700 chr4A 84.302 860 77 35 3084 3903 35181718 35180877 0.000000e+00 787.0
8 TraesCS4B01G262700 chr4A 93.808 323 15 4 4275 4596 35179930 35179612 8.940000e-132 481.0
9 TraesCS4B01G262700 chr4A 92.553 94 7 0 2509 2602 35182221 35182128 8.020000e-28 135.0
10 TraesCS4B01G262700 chr4D 92.520 1631 80 23 694 2307 433819361 433817756 0.000000e+00 2298.0
11 TraesCS4B01G262700 chr4D 87.986 1390 65 61 2472 3844 433817434 433816130 0.000000e+00 1548.0
12 TraesCS4B01G262700 chr4D 87.563 595 56 12 28 617 433820114 433819533 0.000000e+00 673.0
13 TraesCS4B01G262700 chr4D 94.427 323 16 2 4275 4596 433811003 433810682 3.190000e-136 496.0
14 TraesCS4B01G262700 chr4D 94.853 272 13 1 2292 2563 433817574 433817304 1.530000e-114 424.0
15 TraesCS4B01G262700 chr4D 92.553 94 7 0 2509 2602 433817436 433817343 8.020000e-28 135.0
16 TraesCS4B01G262700 chr4D 100.000 33 0 0 4095 4127 433811229 433811197 1.380000e-05 62.1
17 TraesCS4B01G262700 chr3D 75.706 177 30 13 284 453 19331555 19331725 4.930000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G262700 chr4B 532437959 532442554 4595 True 1815.60 8488 92.3208 1 4596 5 chr4B.!!$R1 4595
1 TraesCS4B01G262700 chr4A 35179612 35184543 4931 True 1075.60 2966 89.2906 157 4596 5 chr4A.!!$R1 4439
2 TraesCS4B01G262700 chr4D 433816130 433820114 3984 True 1015.60 2298 91.0950 28 3844 5 chr4D.!!$R2 3816
3 TraesCS4B01G262700 chr4D 433810682 433811229 547 True 279.05 496 97.2135 4095 4596 2 chr4D.!!$R1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 665 0.322456 TCTGAATTTGGAGCACCGGG 60.322 55.0 6.32 0.0 39.42 5.73 F
1599 1715 0.241481 GTCTCCGGATCTACGCCATC 59.759 60.0 3.57 0.0 0.00 3.51 F
1712 1841 0.317160 CGAGTGAGTACTTGGCCACA 59.683 55.0 3.88 0.0 37.25 4.17 F
3098 3480 0.324830 ACGGGAGGAAGAAGAGAGGG 60.325 60.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2266 2410 0.965439 AGCACGAGAACTGAAGAGCT 59.035 50.0 0.0 0.0 0.00 4.09 R
3057 3439 0.032217 CCTCTGCTCTTCCTCCCTCT 60.032 60.0 0.0 0.0 0.00 3.69 R
3123 3505 0.032217 CTCTTCCTCCTCCCTCTGCT 60.032 60.0 0.0 0.0 0.00 4.24 R
3952 4454 1.089920 CGGGATGAACTTTCCAGCAG 58.910 55.0 0.0 0.0 34.77 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.113815 CCCATTCAGGCCCAGCGA 62.114 66.667 0.00 0.00 35.39 4.93
25 26 2.515523 CCATTCAGGCCCAGCGAG 60.516 66.667 0.00 0.00 0.00 5.03
26 27 2.270205 CATTCAGGCCCAGCGAGT 59.730 61.111 0.00 0.00 0.00 4.18
36 37 2.662596 CAGCGAGTGGGCCTTGTA 59.337 61.111 4.53 0.00 0.00 2.41
54 55 6.518200 GCCTTGTATTTCAATTTGAACCCTCA 60.518 38.462 11.30 6.41 35.89 3.86
59 60 4.935352 TTCAATTTGAACCCTCACTTGG 57.065 40.909 7.74 0.00 30.26 3.61
62 63 4.714308 TCAATTTGAACCCTCACTTGGTTT 59.286 37.500 0.00 0.00 45.93 3.27
82 83 2.672996 GTGATGGCGCCACCTTGT 60.673 61.111 35.50 16.95 40.22 3.16
83 84 2.359850 TGATGGCGCCACCTTGTC 60.360 61.111 35.50 25.43 40.22 3.18
105 106 2.543653 GCTGACAAAAAGTGCACGGATT 60.544 45.455 12.01 5.46 0.00 3.01
106 107 3.300009 CTGACAAAAAGTGCACGGATTC 58.700 45.455 12.01 5.33 0.00 2.52
107 108 2.948979 TGACAAAAAGTGCACGGATTCT 59.051 40.909 12.01 0.00 0.00 2.40
109 110 2.293399 ACAAAAAGTGCACGGATTCTCC 59.707 45.455 12.01 0.00 0.00 3.71
147 148 7.828508 TGGTGTGAGAGTTAGTTAAGACTTA 57.171 36.000 0.00 0.00 37.33 2.24
148 149 8.241497 TGGTGTGAGAGTTAGTTAAGACTTAA 57.759 34.615 3.44 3.44 37.33 1.85
295 296 1.686325 TTCGCCTGGGGAGTATCAGC 61.686 60.000 13.50 0.00 36.25 4.26
298 299 1.650528 GCCTGGGGAGTATCAGCTAT 58.349 55.000 0.00 0.00 36.25 2.97
334 335 0.608035 TCCCGGTGCTCCAAATTCAC 60.608 55.000 0.00 0.00 0.00 3.18
508 511 8.898792 CAAAGCAATATCGACAATATTCACATG 58.101 33.333 0.00 0.00 38.28 3.21
589 592 5.067954 AGGTGTTGTGGTTACATTCCTTAC 58.932 41.667 0.00 0.00 36.53 2.34
592 595 4.992319 TGTTGTGGTTACATTCCTTACGAG 59.008 41.667 0.00 0.00 36.53 4.18
599 602 5.527582 GGTTACATTCCTTACGAGCATTCAT 59.472 40.000 0.00 0.00 0.00 2.57
600 603 6.038271 GGTTACATTCCTTACGAGCATTCATT 59.962 38.462 0.00 0.00 0.00 2.57
636 665 0.322456 TCTGAATTTGGAGCACCGGG 60.322 55.000 6.32 0.00 39.42 5.73
637 666 0.322456 CTGAATTTGGAGCACCGGGA 60.322 55.000 6.32 0.00 39.42 5.14
638 667 0.322456 TGAATTTGGAGCACCGGGAG 60.322 55.000 6.32 0.00 39.42 4.30
639 668 0.322546 GAATTTGGAGCACCGGGAGT 60.323 55.000 6.32 0.00 39.42 3.85
641 670 0.988832 ATTTGGAGCACCGGGAGTAA 59.011 50.000 6.32 0.00 39.42 2.24
643 672 1.833787 TTGGAGCACCGGGAGTAACC 61.834 60.000 6.32 1.85 39.42 2.85
656 691 3.181461 GGGAGTAACCTGATCACCTGATG 60.181 52.174 0.00 0.00 38.98 3.07
682 722 2.135933 CCATCCTTCGCCGTTTATCTC 58.864 52.381 0.00 0.00 0.00 2.75
726 766 4.083003 CCTTAAGCACCGAAATTAGCAACA 60.083 41.667 0.00 0.00 0.00 3.33
736 832 4.034048 CGAAATTAGCAACAGAAGCCGTAT 59.966 41.667 0.00 0.00 0.00 3.06
782 878 3.424829 GCACCAAATGGACATATATCGCG 60.425 47.826 6.42 0.00 38.94 5.87
838 934 0.747255 AGTGGCTAGCATAGGACACG 59.253 55.000 18.24 0.00 39.70 4.49
1059 1158 1.073768 GAGGTCGACGAGAAAGCAGC 61.074 60.000 9.92 0.00 0.00 5.25
1441 1557 1.463674 ATGTCGTGATTTTCTGGGGC 58.536 50.000 0.00 0.00 0.00 5.80
1485 1601 2.034066 CAAGAAGGGGGCAGCGAA 59.966 61.111 0.00 0.00 0.00 4.70
1494 1610 2.563427 GGCAGCGAAACAAGCTCC 59.437 61.111 0.00 0.00 44.06 4.70
1501 1617 1.604604 CGAAACAAGCTCCCTGGAAA 58.395 50.000 0.00 0.00 0.00 3.13
1599 1715 0.241481 GTCTCCGGATCTACGCCATC 59.759 60.000 3.57 0.00 0.00 3.51
1660 1776 3.514309 ACCTACAGACCGCTTCTATGTTT 59.486 43.478 0.00 0.00 31.12 2.83
1681 1800 9.911788 ATGTTTGGTGATCTACTTATTCATTCT 57.088 29.630 0.00 0.00 0.00 2.40
1683 1802 9.994432 GTTTGGTGATCTACTTATTCATTCTTG 57.006 33.333 0.00 0.00 0.00 3.02
1685 1804 6.479990 TGGTGATCTACTTATTCATTCTTGCG 59.520 38.462 0.00 0.00 0.00 4.85
1686 1805 6.701841 GGTGATCTACTTATTCATTCTTGCGA 59.298 38.462 0.00 0.00 0.00 5.10
1687 1806 7.386299 GGTGATCTACTTATTCATTCTTGCGAT 59.614 37.037 0.00 0.00 0.00 4.58
1710 1839 0.601558 GACGAGTGAGTACTTGGCCA 59.398 55.000 0.00 0.00 40.03 5.36
1712 1841 0.317160 CGAGTGAGTACTTGGCCACA 59.683 55.000 3.88 0.00 37.25 4.17
1713 1842 1.270094 CGAGTGAGTACTTGGCCACAA 60.270 52.381 3.88 0.00 37.25 3.33
1724 1853 0.531657 TGGCCACAATATTGCAGCAC 59.468 50.000 23.95 16.47 32.83 4.40
1729 1858 1.549620 CACAATATTGCAGCACCCCAA 59.450 47.619 15.48 0.00 0.00 4.12
1730 1859 1.826720 ACAATATTGCAGCACCCCAAG 59.173 47.619 15.48 0.00 0.00 3.61
1775 1904 6.070596 TCAGCAATCTACTGAGAGGATTTGAA 60.071 38.462 0.00 0.00 39.21 2.69
1812 1941 5.516044 GACAGGGATTTGGGGTAAGTAAAT 58.484 41.667 0.00 0.00 0.00 1.40
1823 1960 9.737844 TTTGGGGTAAGTAAATTTAGTACGAAT 57.262 29.630 5.98 0.00 0.00 3.34
2000 2137 9.827422 AGTCGAATTGGACGGAAGAAATCTTCA 62.827 40.741 21.23 3.84 44.58 3.02
2101 2244 2.457366 AATCCAAGAGCGAGACGTTT 57.543 45.000 0.00 0.00 0.00 3.60
2250 2394 1.294857 GGGCAGAAGATTCTTCGCTC 58.705 55.000 26.78 23.51 34.74 5.03
2266 2410 1.497991 GCTCACTGTTGCGTTGAGTA 58.502 50.000 0.00 0.00 0.00 2.59
2268 2412 1.457303 CTCACTGTTGCGTTGAGTAGC 59.543 52.381 0.00 0.00 0.00 3.58
2270 2414 1.457303 CACTGTTGCGTTGAGTAGCTC 59.543 52.381 0.00 0.00 0.00 4.09
2565 2905 4.429212 CGGCGATCACGGTCACCA 62.429 66.667 0.00 0.00 40.15 4.17
2566 2906 2.813908 GGCGATCACGGTCACCAC 60.814 66.667 0.00 0.00 40.15 4.16
2567 2907 3.179265 GCGATCACGGTCACCACG 61.179 66.667 0.00 0.00 40.15 4.94
2568 2908 2.564458 CGATCACGGTCACCACGA 59.436 61.111 0.00 0.00 35.72 4.35
2569 2909 1.800315 CGATCACGGTCACCACGAC 60.800 63.158 0.00 0.00 44.57 4.34
2570 2910 1.800315 GATCACGGTCACCACGACG 60.800 63.158 0.00 0.00 46.42 5.12
2571 2911 2.191354 GATCACGGTCACCACGACGA 62.191 60.000 0.00 0.00 46.42 4.20
2572 2912 2.196382 ATCACGGTCACCACGACGAG 62.196 60.000 0.00 0.00 46.42 4.18
2573 2913 3.667282 ACGGTCACCACGACGAGG 61.667 66.667 9.97 9.97 46.42 4.63
2574 2914 4.415332 CGGTCACCACGACGAGGG 62.415 72.222 15.92 11.91 46.42 4.30
2575 2915 4.736896 GGTCACCACGACGAGGGC 62.737 72.222 15.92 5.43 46.42 5.19
2815 3155 2.801631 GGAGATAGTGGCGCTGGCT 61.802 63.158 11.58 7.53 39.81 4.75
2980 3329 0.340208 GGGAAGAGGAGGAGAGGGAA 59.660 60.000 0.00 0.00 0.00 3.97
3044 3417 3.024356 AGAGGGCGAGGAGGGAGA 61.024 66.667 0.00 0.00 0.00 3.71
3057 3439 1.630878 GAGGGAGAAGGAAAGGAAGCA 59.369 52.381 0.00 0.00 0.00 3.91
3059 3441 1.630878 GGGAGAAGGAAAGGAAGCAGA 59.369 52.381 0.00 0.00 0.00 4.26
3060 3442 2.355615 GGGAGAAGGAAAGGAAGCAGAG 60.356 54.545 0.00 0.00 0.00 3.35
3088 3470 0.836400 AGCAGAGGAAACGGGAGGAA 60.836 55.000 0.00 0.00 0.00 3.36
3098 3480 0.324830 ACGGGAGGAAGAAGAGAGGG 60.325 60.000 0.00 0.00 0.00 4.30
3100 3482 1.788229 GGGAGGAAGAAGAGAGGGAG 58.212 60.000 0.00 0.00 0.00 4.30
3101 3483 1.289530 GGGAGGAAGAAGAGAGGGAGA 59.710 57.143 0.00 0.00 0.00 3.71
3102 3484 2.666317 GGAGGAAGAAGAGAGGGAGAG 58.334 57.143 0.00 0.00 0.00 3.20
3103 3485 2.666317 GAGGAAGAAGAGAGGGAGAGG 58.334 57.143 0.00 0.00 0.00 3.69
3104 3486 2.243736 GAGGAAGAAGAGAGGGAGAGGA 59.756 54.545 0.00 0.00 0.00 3.71
3105 3487 2.244769 AGGAAGAAGAGAGGGAGAGGAG 59.755 54.545 0.00 0.00 0.00 3.69
3106 3488 2.243736 GGAAGAAGAGAGGGAGAGGAGA 59.756 54.545 0.00 0.00 0.00 3.71
3107 3489 3.555966 GAAGAAGAGAGGGAGAGGAGAG 58.444 54.545 0.00 0.00 0.00 3.20
3108 3490 2.858644 AGAAGAGAGGGAGAGGAGAGA 58.141 52.381 0.00 0.00 0.00 3.10
3109 3491 2.780010 AGAAGAGAGGGAGAGGAGAGAG 59.220 54.545 0.00 0.00 0.00 3.20
3110 3492 1.522900 AGAGAGGGAGAGGAGAGAGG 58.477 60.000 0.00 0.00 0.00 3.69
3111 3493 1.010793 AGAGAGGGAGAGGAGAGAGGA 59.989 57.143 0.00 0.00 0.00 3.71
3112 3494 1.421646 GAGAGGGAGAGGAGAGAGGAG 59.578 61.905 0.00 0.00 0.00 3.69
3113 3495 1.010793 AGAGGGAGAGGAGAGAGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
3114 3496 1.850345 GAGGGAGAGGAGAGAGGAGAA 59.150 57.143 0.00 0.00 0.00 2.87
3115 3497 1.852965 AGGGAGAGGAGAGAGGAGAAG 59.147 57.143 0.00 0.00 0.00 2.85
3116 3498 1.133482 GGGAGAGGAGAGAGGAGAAGG 60.133 61.905 0.00 0.00 0.00 3.46
3117 3499 1.850345 GGAGAGGAGAGAGGAGAAGGA 59.150 57.143 0.00 0.00 0.00 3.36
3118 3500 2.243736 GGAGAGGAGAGAGGAGAAGGAA 59.756 54.545 0.00 0.00 0.00 3.36
3119 3501 3.309556 GGAGAGGAGAGAGGAGAAGGAAA 60.310 52.174 0.00 0.00 0.00 3.13
3120 3502 3.954258 GAGAGGAGAGAGGAGAAGGAAAG 59.046 52.174 0.00 0.00 0.00 2.62
3121 3503 3.031013 GAGGAGAGAGGAGAAGGAAAGG 58.969 54.545 0.00 0.00 0.00 3.11
3122 3504 2.657459 AGGAGAGAGGAGAAGGAAAGGA 59.343 50.000 0.00 0.00 0.00 3.36
3123 3505 3.078305 AGGAGAGAGGAGAAGGAAAGGAA 59.922 47.826 0.00 0.00 0.00 3.36
3124 3506 3.450817 GGAGAGAGGAGAAGGAAAGGAAG 59.549 52.174 0.00 0.00 0.00 3.46
3125 3507 2.837591 AGAGAGGAGAAGGAAAGGAAGC 59.162 50.000 0.00 0.00 0.00 3.86
3126 3508 2.569404 GAGAGGAGAAGGAAAGGAAGCA 59.431 50.000 0.00 0.00 0.00 3.91
3127 3509 2.571202 AGAGGAGAAGGAAAGGAAGCAG 59.429 50.000 0.00 0.00 0.00 4.24
3128 3510 2.569404 GAGGAGAAGGAAAGGAAGCAGA 59.431 50.000 0.00 0.00 0.00 4.26
3129 3511 2.571202 AGGAGAAGGAAAGGAAGCAGAG 59.429 50.000 0.00 0.00 0.00 3.35
3130 3512 2.355615 GGAGAAGGAAAGGAAGCAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
3131 3513 1.632920 AGAAGGAAAGGAAGCAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
3132 3514 1.630878 GAAGGAAAGGAAGCAGAGGGA 59.369 52.381 0.00 0.00 0.00 4.20
3133 3515 1.284313 AGGAAAGGAAGCAGAGGGAG 58.716 55.000 0.00 0.00 0.00 4.30
3134 3516 0.254462 GGAAAGGAAGCAGAGGGAGG 59.746 60.000 0.00 0.00 0.00 4.30
3135 3517 1.280457 GAAAGGAAGCAGAGGGAGGA 58.720 55.000 0.00 0.00 0.00 3.71
3136 3518 1.209261 GAAAGGAAGCAGAGGGAGGAG 59.791 57.143 0.00 0.00 0.00 3.69
3137 3519 0.620121 AAGGAAGCAGAGGGAGGAGG 60.620 60.000 0.00 0.00 0.00 4.30
3138 3520 1.002274 GGAAGCAGAGGGAGGAGGA 59.998 63.158 0.00 0.00 0.00 3.71
3139 3521 0.618968 GGAAGCAGAGGGAGGAGGAA 60.619 60.000 0.00 0.00 0.00 3.36
3140 3522 0.829990 GAAGCAGAGGGAGGAGGAAG 59.170 60.000 0.00 0.00 0.00 3.46
3141 3523 0.415429 AAGCAGAGGGAGGAGGAAGA 59.585 55.000 0.00 0.00 0.00 2.87
3142 3524 0.032217 AGCAGAGGGAGGAGGAAGAG 60.032 60.000 0.00 0.00 0.00 2.85
3143 3525 0.032615 GCAGAGGGAGGAGGAAGAGA 60.033 60.000 0.00 0.00 0.00 3.10
3144 3526 2.028996 GCAGAGGGAGGAGGAAGAGAG 61.029 61.905 0.00 0.00 0.00 3.20
3145 3527 0.933700 AGAGGGAGGAGGAAGAGAGG 59.066 60.000 0.00 0.00 0.00 3.69
3146 3528 0.105709 GAGGGAGGAGGAAGAGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
3147 3529 1.764454 GGGAGGAGGAAGAGAGGGC 60.764 68.421 0.00 0.00 0.00 5.19
3148 3530 2.131067 GGAGGAGGAAGAGAGGGCG 61.131 68.421 0.00 0.00 0.00 6.13
3149 3531 1.076632 GAGGAGGAAGAGAGGGCGA 60.077 63.158 0.00 0.00 0.00 5.54
3150 3532 1.076339 AGGAGGAAGAGAGGGCGAG 60.076 63.158 0.00 0.00 0.00 5.03
3151 3533 2.131067 GGAGGAAGAGAGGGCGAGG 61.131 68.421 0.00 0.00 0.00 4.63
3152 3534 1.076632 GAGGAAGAGAGGGCGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
3153 3535 1.076339 AGGAAGAGAGGGCGAGGAG 60.076 63.158 0.00 0.00 0.00 3.69
3154 3536 1.076632 GGAAGAGAGGGCGAGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
3155 3537 1.106944 GGAAGAGAGGGCGAGGAGAG 61.107 65.000 0.00 0.00 0.00 3.20
3156 3538 0.106918 GAAGAGAGGGCGAGGAGAGA 60.107 60.000 0.00 0.00 0.00 3.10
3157 3539 0.106719 AAGAGAGGGCGAGGAGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
3158 3540 0.986019 AGAGAGGGCGAGGAGAGAGA 60.986 60.000 0.00 0.00 0.00 3.10
3159 3541 0.106918 GAGAGGGCGAGGAGAGAGAA 60.107 60.000 0.00 0.00 0.00 2.87
3160 3542 0.106719 AGAGGGCGAGGAGAGAGAAG 60.107 60.000 0.00 0.00 0.00 2.85
3161 3543 1.076339 AGGGCGAGGAGAGAGAAGG 60.076 63.158 0.00 0.00 0.00 3.46
3162 3544 1.076632 GGGCGAGGAGAGAGAAGGA 60.077 63.158 0.00 0.00 0.00 3.36
3163 3545 0.684805 GGGCGAGGAGAGAGAAGGAA 60.685 60.000 0.00 0.00 0.00 3.36
3164 3546 1.187087 GGCGAGGAGAGAGAAGGAAA 58.813 55.000 0.00 0.00 0.00 3.13
3165 3547 1.136110 GGCGAGGAGAGAGAAGGAAAG 59.864 57.143 0.00 0.00 0.00 2.62
3166 3548 1.136110 GCGAGGAGAGAGAAGGAAAGG 59.864 57.143 0.00 0.00 0.00 3.11
3167 3549 2.729194 CGAGGAGAGAGAAGGAAAGGA 58.271 52.381 0.00 0.00 0.00 3.36
3168 3550 3.093057 CGAGGAGAGAGAAGGAAAGGAA 58.907 50.000 0.00 0.00 0.00 3.36
3169 3551 3.130340 CGAGGAGAGAGAAGGAAAGGAAG 59.870 52.174 0.00 0.00 0.00 3.46
3170 3552 3.449918 AGGAGAGAGAAGGAAAGGAAGG 58.550 50.000 0.00 0.00 0.00 3.46
3171 3553 3.078305 AGGAGAGAGAAGGAAAGGAAGGA 59.922 47.826 0.00 0.00 0.00 3.36
3172 3554 3.450817 GGAGAGAGAAGGAAAGGAAGGAG 59.549 52.174 0.00 0.00 0.00 3.69
3173 3555 4.349365 GAGAGAGAAGGAAAGGAAGGAGA 58.651 47.826 0.00 0.00 0.00 3.71
3174 3556 4.352893 AGAGAGAAGGAAAGGAAGGAGAG 58.647 47.826 0.00 0.00 0.00 3.20
3175 3557 3.449918 AGAGAAGGAAAGGAAGGAGAGG 58.550 50.000 0.00 0.00 0.00 3.69
3176 3558 2.503765 GAGAAGGAAAGGAAGGAGAGGG 59.496 54.545 0.00 0.00 0.00 4.30
3177 3559 2.114506 AGAAGGAAAGGAAGGAGAGGGA 59.885 50.000 0.00 0.00 0.00 4.20
3178 3560 2.262266 AGGAAAGGAAGGAGAGGGAG 57.738 55.000 0.00 0.00 0.00 4.30
3179 3561 1.208706 GGAAAGGAAGGAGAGGGAGG 58.791 60.000 0.00 0.00 0.00 4.30
3180 3562 1.273896 GGAAAGGAAGGAGAGGGAGGA 60.274 57.143 0.00 0.00 0.00 3.71
3181 3563 2.115427 GAAAGGAAGGAGAGGGAGGAG 58.885 57.143 0.00 0.00 0.00 3.69
3182 3564 0.341609 AAGGAAGGAGAGGGAGGAGG 59.658 60.000 0.00 0.00 0.00 4.30
3183 3565 0.556380 AGGAAGGAGAGGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
3184 3566 0.340208 GGAAGGAGAGGGAGGAGGAA 59.660 60.000 0.00 0.00 0.00 3.36
3185 3567 1.691163 GGAAGGAGAGGGAGGAGGAAG 60.691 61.905 0.00 0.00 0.00 3.46
3186 3568 1.289530 GAAGGAGAGGGAGGAGGAAGA 59.710 57.143 0.00 0.00 0.00 2.87
3187 3569 1.398799 AGGAGAGGGAGGAGGAAGAA 58.601 55.000 0.00 0.00 0.00 2.52
3188 3570 1.290732 AGGAGAGGGAGGAGGAAGAAG 59.709 57.143 0.00 0.00 0.00 2.85
3189 3571 1.119684 GAGAGGGAGGAGGAAGAAGC 58.880 60.000 0.00 0.00 0.00 3.86
3190 3572 0.415429 AGAGGGAGGAGGAAGAAGCA 59.585 55.000 0.00 0.00 0.00 3.91
3191 3573 0.829990 GAGGGAGGAGGAAGAAGCAG 59.170 60.000 0.00 0.00 0.00 4.24
3192 3574 1.223211 GGGAGGAGGAAGAAGCAGC 59.777 63.158 0.00 0.00 0.00 5.25
3229 3659 4.412060 AGAGGAAGAAGAAAGGAGGAGA 57.588 45.455 0.00 0.00 0.00 3.71
3325 3755 1.341913 GGAGGGAGGAGGAAGAAGGC 61.342 65.000 0.00 0.00 0.00 4.35
3362 3804 0.412244 TCCGAGGGAGGAAGAGGAAA 59.588 55.000 0.00 0.00 37.36 3.13
3373 3818 1.268283 AAGAGGAAAGGCGGAGGAGG 61.268 60.000 0.00 0.00 0.00 4.30
3388 3833 1.764454 GAGGGAGGAGGAAGAGGGC 60.764 68.421 0.00 0.00 0.00 5.19
3439 3884 0.966370 CGAGGGAGGAAGAGGAACGT 60.966 60.000 0.00 0.00 0.00 3.99
3443 3888 0.460722 GGAGGAAGAGGAACGTAGGC 59.539 60.000 0.00 0.00 0.00 3.93
3466 3911 0.759060 GGAGAGAGGAGGAGGAAGGC 60.759 65.000 0.00 0.00 0.00 4.35
3518 3972 2.203788 AAGGCGACTGGGGAGACA 60.204 61.111 0.00 0.00 42.68 3.41
3521 3975 3.311110 GCGACTGGGGAGACACCA 61.311 66.667 0.00 0.00 41.20 4.17
3599 4059 1.004560 TTCCAGAGCGCCTGAACAG 60.005 57.895 22.49 9.52 45.78 3.16
3600 4060 3.123620 CCAGAGCGCCTGAACAGC 61.124 66.667 22.49 0.00 45.78 4.40
3601 4061 3.123620 CAGAGCGCCTGAACAGCC 61.124 66.667 17.75 0.00 45.78 4.85
3602 4062 4.749310 AGAGCGCCTGAACAGCCG 62.749 66.667 2.29 0.89 0.00 5.52
3608 4068 3.423154 CCTGAACAGCCGCCGTTC 61.423 66.667 11.83 11.83 42.52 3.95
3609 4069 3.423154 CTGAACAGCCGCCGTTCC 61.423 66.667 15.31 0.77 41.70 3.62
3610 4070 4.243008 TGAACAGCCGCCGTTCCA 62.243 61.111 15.31 3.08 41.70 3.53
3611 4071 3.423154 GAACAGCCGCCGTTCCAG 61.423 66.667 8.09 0.00 37.40 3.86
3612 4072 3.876589 GAACAGCCGCCGTTCCAGA 62.877 63.158 8.09 0.00 37.40 3.86
3613 4073 4.681978 ACAGCCGCCGTTCCAGAC 62.682 66.667 0.00 0.00 0.00 3.51
3632 4092 1.227823 TTCCAGTCACCTTGCACGG 60.228 57.895 7.87 7.87 0.00 4.94
3647 4107 0.965866 CACGGTCTCTGCTCTACCCA 60.966 60.000 0.00 0.00 0.00 4.51
3724 4186 7.006865 TGTTCAGTCTACTGTAGTCTCTACT 57.993 40.000 14.11 7.39 44.12 2.57
3725 4187 7.098477 TGTTCAGTCTACTGTAGTCTCTACTC 58.902 42.308 14.11 0.81 44.12 2.59
3770 4233 1.682854 CCACAATGCCACTGTGTCTTT 59.317 47.619 5.49 0.00 42.18 2.52
3778 4241 2.548920 GCCACTGTGTCTTTCTGTAGCT 60.549 50.000 7.08 0.00 0.00 3.32
3786 4249 5.479027 TGTGTCTTTCTGTAGCTGGTGTATA 59.521 40.000 0.00 0.00 0.00 1.47
3787 4250 6.037098 GTGTCTTTCTGTAGCTGGTGTATAG 58.963 44.000 0.00 0.00 0.00 1.31
3788 4251 5.949952 TGTCTTTCTGTAGCTGGTGTATAGA 59.050 40.000 0.00 0.00 0.00 1.98
3802 4268 5.112686 GGTGTATAGAAGAAGAGCTTGTGG 58.887 45.833 0.00 0.00 36.83 4.17
3813 4279 4.078639 AGAGCTTGTGGATTATGCCTAC 57.921 45.455 0.00 0.00 0.00 3.18
3814 4280 2.802816 GAGCTTGTGGATTATGCCTACG 59.197 50.000 0.00 0.00 0.00 3.51
3815 4281 2.170607 AGCTTGTGGATTATGCCTACGT 59.829 45.455 0.00 0.00 0.00 3.57
3816 4282 3.386726 AGCTTGTGGATTATGCCTACGTA 59.613 43.478 0.00 0.00 0.00 3.57
3845 4311 1.446907 AAAGGAGCTGTTCATCGCAG 58.553 50.000 0.00 0.00 37.06 5.18
3850 4316 0.675837 AGCTGTTCATCGCAGTGCAT 60.676 50.000 16.83 5.08 36.42 3.96
3884 4350 2.158900 ACTGGTGCATAATCTCCTTCCG 60.159 50.000 0.00 0.00 0.00 4.30
3916 4393 4.832248 TCCGCTCATAGAACAGTGAAATT 58.168 39.130 0.00 0.00 0.00 1.82
3917 4394 4.631377 TCCGCTCATAGAACAGTGAAATTG 59.369 41.667 0.00 0.00 0.00 2.32
3921 4398 6.091305 CGCTCATAGAACAGTGAAATTGAAGA 59.909 38.462 0.00 0.00 0.00 2.87
3926 4403 9.270576 CATAGAACAGTGAAATTGAAGAAATCG 57.729 33.333 0.00 0.00 0.00 3.34
3927 4404 7.264373 AGAACAGTGAAATTGAAGAAATCGT 57.736 32.000 0.00 0.00 0.00 3.73
3928 4405 7.134815 AGAACAGTGAAATTGAAGAAATCGTG 58.865 34.615 0.00 0.00 0.00 4.35
3936 4438 8.285394 TGAAATTGAAGAAATCGTGAAAGAGAG 58.715 33.333 0.00 0.00 0.00 3.20
3950 4452 6.868864 CGTGAAAGAGAGGAACAAATTCTCTA 59.131 38.462 3.90 0.00 45.10 2.43
3952 4454 8.878769 GTGAAAGAGAGGAACAAATTCTCTATC 58.121 37.037 3.90 0.00 45.10 2.08
3965 4467 7.120432 ACAAATTCTCTATCTGCTGGAAAGTTC 59.880 37.037 0.00 0.00 0.00 3.01
3966 4468 5.745312 TTCTCTATCTGCTGGAAAGTTCA 57.255 39.130 0.00 0.00 0.00 3.18
3967 4469 5.946942 TCTCTATCTGCTGGAAAGTTCAT 57.053 39.130 0.00 0.00 0.00 2.57
3968 4470 5.911752 TCTCTATCTGCTGGAAAGTTCATC 58.088 41.667 0.00 0.00 0.00 2.92
3969 4471 5.028549 TCTATCTGCTGGAAAGTTCATCC 57.971 43.478 0.00 0.00 37.48 3.51
3970 4472 2.496899 TCTGCTGGAAAGTTCATCCC 57.503 50.000 0.00 0.00 36.04 3.85
3971 4473 1.089920 CTGCTGGAAAGTTCATCCCG 58.910 55.000 0.00 0.00 36.04 5.14
3972 4474 0.400213 TGCTGGAAAGTTCATCCCGT 59.600 50.000 0.00 0.00 36.04 5.28
3973 4475 1.087501 GCTGGAAAGTTCATCCCGTC 58.912 55.000 0.00 0.00 36.04 4.79
3974 4476 1.739067 CTGGAAAGTTCATCCCGTCC 58.261 55.000 0.00 0.00 36.04 4.79
3975 4477 1.279271 CTGGAAAGTTCATCCCGTCCT 59.721 52.381 0.00 0.00 36.04 3.85
3976 4478 1.702957 TGGAAAGTTCATCCCGTCCTT 59.297 47.619 0.00 0.00 36.04 3.36
3977 4479 2.084546 GGAAAGTTCATCCCGTCCTTG 58.915 52.381 0.00 0.00 0.00 3.61
3979 4481 0.693049 AAGTTCATCCCGTCCTTGCT 59.307 50.000 0.00 0.00 0.00 3.91
3980 4482 1.568504 AGTTCATCCCGTCCTTGCTA 58.431 50.000 0.00 0.00 0.00 3.49
3982 4484 1.207329 GTTCATCCCGTCCTTGCTACT 59.793 52.381 0.00 0.00 0.00 2.57
3983 4485 2.429610 GTTCATCCCGTCCTTGCTACTA 59.570 50.000 0.00 0.00 0.00 1.82
3984 4486 2.029623 TCATCCCGTCCTTGCTACTAC 58.970 52.381 0.00 0.00 0.00 2.73
3985 4487 1.754803 CATCCCGTCCTTGCTACTACA 59.245 52.381 0.00 0.00 0.00 2.74
3986 4488 2.154567 TCCCGTCCTTGCTACTACAT 57.845 50.000 0.00 0.00 0.00 2.29
3988 4490 1.480954 CCCGTCCTTGCTACTACATGT 59.519 52.381 2.69 2.69 0.00 3.21
3991 4493 4.110482 CCGTCCTTGCTACTACATGTTAC 58.890 47.826 2.30 0.00 0.00 2.50
3992 4494 4.381185 CCGTCCTTGCTACTACATGTTACA 60.381 45.833 2.30 0.00 0.00 2.41
3994 4496 5.621555 CGTCCTTGCTACTACATGTTACAGT 60.622 44.000 2.30 4.08 0.00 3.55
3995 4497 6.164176 GTCCTTGCTACTACATGTTACAGTT 58.836 40.000 2.30 0.00 0.00 3.16
3996 4498 6.649557 GTCCTTGCTACTACATGTTACAGTTT 59.350 38.462 2.30 0.00 0.00 2.66
3998 4500 6.874134 CCTTGCTACTACATGTTACAGTTTCT 59.126 38.462 2.30 0.00 0.00 2.52
3999 4501 7.148573 CCTTGCTACTACATGTTACAGTTTCTG 60.149 40.741 2.30 0.00 37.52 3.02
4000 4502 6.988522 TGCTACTACATGTTACAGTTTCTGA 58.011 36.000 2.30 0.00 35.18 3.27
4001 4503 7.611770 TGCTACTACATGTTACAGTTTCTGAT 58.388 34.615 2.30 0.00 35.18 2.90
4006 4508 9.424319 ACTACATGTTACAGTTTCTGATTACTG 57.576 33.333 2.30 15.02 45.61 2.74
4013 4515 5.679734 CAGTTTCTGATTACTGTGCTGTT 57.320 39.130 10.58 0.00 37.56 3.16
4014 4516 5.446709 CAGTTTCTGATTACTGTGCTGTTG 58.553 41.667 10.58 0.00 37.56 3.33
4016 4518 5.590259 AGTTTCTGATTACTGTGCTGTTGTT 59.410 36.000 0.00 0.00 0.00 2.83
4017 4519 5.422666 TTCTGATTACTGTGCTGTTGTTG 57.577 39.130 0.00 0.00 0.00 3.33
4027 5017 4.346970 TGTGCTGTTGTTGAATTGTTACG 58.653 39.130 0.00 0.00 0.00 3.18
4034 5024 7.253950 GCTGTTGTTGAATTGTTACGTTTTGAT 60.254 33.333 0.00 0.00 0.00 2.57
4036 5026 7.755373 TGTTGTTGAATTGTTACGTTTTGATGA 59.245 29.630 0.00 0.00 0.00 2.92
4037 5027 7.906611 TGTTGAATTGTTACGTTTTGATGAG 57.093 32.000 0.00 0.00 0.00 2.90
4038 5028 7.476667 TGTTGAATTGTTACGTTTTGATGAGT 58.523 30.769 0.00 0.00 0.00 3.41
4039 5029 7.971168 TGTTGAATTGTTACGTTTTGATGAGTT 59.029 29.630 0.00 0.00 0.00 3.01
4041 5031 8.996988 TGAATTGTTACGTTTTGATGAGTTAC 57.003 30.769 0.00 0.00 0.00 2.50
4065 5059 8.627208 ACTCATTTGTAGACATGAAATCAGTT 57.373 30.769 0.00 0.00 0.00 3.16
4067 5077 7.819644 TCATTTGTAGACATGAAATCAGTTGG 58.180 34.615 0.00 0.00 0.00 3.77
4080 5090 3.981071 TCAGTTGGATTCCAGGTACAG 57.019 47.619 5.36 0.00 33.81 2.74
4084 5094 3.650942 AGTTGGATTCCAGGTACAGTGAA 59.349 43.478 5.36 0.00 33.81 3.18
4085 5095 4.289672 AGTTGGATTCCAGGTACAGTGAAT 59.710 41.667 5.36 0.00 33.81 2.57
4086 5096 4.927267 TGGATTCCAGGTACAGTGAATT 57.073 40.909 0.00 0.00 0.00 2.17
4087 5097 5.255397 TGGATTCCAGGTACAGTGAATTT 57.745 39.130 0.00 0.00 0.00 1.82
4088 5098 6.381498 TGGATTCCAGGTACAGTGAATTTA 57.619 37.500 0.00 0.00 0.00 1.40
4089 5099 6.414732 TGGATTCCAGGTACAGTGAATTTAG 58.585 40.000 0.00 0.00 0.00 1.85
4090 5100 6.214615 TGGATTCCAGGTACAGTGAATTTAGA 59.785 38.462 0.00 0.00 0.00 2.10
4091 5101 7.110155 GGATTCCAGGTACAGTGAATTTAGAA 58.890 38.462 0.00 0.00 0.00 2.10
4092 5102 7.281100 GGATTCCAGGTACAGTGAATTTAGAAG 59.719 40.741 0.00 0.00 0.00 2.85
4093 5103 6.928348 TCCAGGTACAGTGAATTTAGAAGA 57.072 37.500 0.00 0.00 0.00 2.87
4128 5138 9.764363 AAAATTACGAATAGATGCTCATACTCA 57.236 29.630 0.00 0.00 0.00 3.41
4139 5172 2.402305 CTCATACTCAAGCGATGCTCC 58.598 52.381 0.00 0.00 38.25 4.70
4145 5178 2.359531 ACTCAAGCGATGCTCCTACTAC 59.640 50.000 0.00 0.00 38.25 2.73
4225 5259 3.460672 GATTCCCAGCGATGGCCGA 62.461 63.158 15.97 4.03 41.76 5.54
4226 5260 2.738213 GATTCCCAGCGATGGCCGAT 62.738 60.000 15.97 7.31 41.76 4.18
4231 5265 4.957684 AGCGATGGCCGATGAGCG 62.958 66.667 0.00 0.00 41.76 5.03
4263 5297 5.868801 CCATTAATACCCACTGCAAAAACAG 59.131 40.000 0.00 0.00 43.59 3.16
4291 5360 5.106791 GCATAACTGATCGCATAGCAGAATT 60.107 40.000 8.19 0.00 44.73 2.17
4355 5424 3.394674 TGTTAATCCAGCGACTTGACA 57.605 42.857 0.00 0.00 0.00 3.58
4356 5425 3.937814 TGTTAATCCAGCGACTTGACAT 58.062 40.909 0.00 0.00 0.00 3.06
4374 5443 7.663081 ACTTGACATGAGTTAAATCACAGACAT 59.337 33.333 7.92 0.00 30.46 3.06
4389 5458 4.448732 CACAGACATCATCGAAACAACTGA 59.551 41.667 12.97 2.00 0.00 3.41
4457 5527 2.868044 GCTGTCAAGGATGTCGTTCAGT 60.868 50.000 0.00 0.00 0.00 3.41
4519 5589 5.964758 TGTTGCAATCCATGATTAGAAACC 58.035 37.500 0.59 0.00 30.44 3.27
4526 5596 5.366482 TCCATGATTAGAAACCGATGGAA 57.634 39.130 0.00 0.00 37.11 3.53
4543 5614 4.811969 TGGAAGCGTTTTCCTGATAGTA 57.188 40.909 17.79 0.00 39.31 1.82
4574 5645 2.952714 GCAGGTGCTTGTGGAGAAT 58.047 52.632 0.00 0.00 38.21 2.40
4575 5646 1.251251 GCAGGTGCTTGTGGAGAATT 58.749 50.000 0.00 0.00 38.21 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.113815 TCGCTGGGCCTGAATGGG 62.114 66.667 15.36 3.51 36.00 4.00
8 9 2.515523 CTCGCTGGGCCTGAATGG 60.516 66.667 15.36 0.01 39.35 3.16
9 10 2.110967 CACTCGCTGGGCCTGAATG 61.111 63.158 15.36 1.27 0.00 2.67
10 11 2.270205 CACTCGCTGGGCCTGAAT 59.730 61.111 15.36 0.00 0.00 2.57
11 12 4.020617 CCACTCGCTGGGCCTGAA 62.021 66.667 15.36 0.12 36.18 3.02
18 19 2.257409 ATACAAGGCCCACTCGCTGG 62.257 60.000 0.00 0.00 40.26 4.85
19 20 0.392998 AATACAAGGCCCACTCGCTG 60.393 55.000 0.00 0.00 0.00 5.18
20 21 0.328258 AAATACAAGGCCCACTCGCT 59.672 50.000 0.00 0.00 0.00 4.93
21 22 0.733150 GAAATACAAGGCCCACTCGC 59.267 55.000 0.00 0.00 0.00 5.03
22 23 2.107950 TGAAATACAAGGCCCACTCG 57.892 50.000 0.00 0.00 0.00 4.18
23 24 5.047377 TCAAATTGAAATACAAGGCCCACTC 60.047 40.000 0.00 0.00 42.02 3.51
24 25 4.837860 TCAAATTGAAATACAAGGCCCACT 59.162 37.500 0.00 0.00 42.02 4.00
25 26 5.146010 TCAAATTGAAATACAAGGCCCAC 57.854 39.130 0.00 0.00 42.02 4.61
26 27 5.512232 GGTTCAAATTGAAATACAAGGCCCA 60.512 40.000 10.27 0.00 42.02 5.36
36 37 5.366477 ACCAAGTGAGGGTTCAAATTGAAAT 59.634 36.000 10.27 0.00 38.22 2.17
54 55 1.234615 CGCCATCACGGAAACCAAGT 61.235 55.000 0.00 0.00 36.56 3.16
59 60 3.053291 TGGCGCCATCACGGAAAC 61.053 61.111 29.03 0.00 36.56 2.78
82 83 0.027455 CGTGCACTTTTTGTCAGCGA 59.973 50.000 16.19 0.00 0.00 4.93
83 84 0.929824 CCGTGCACTTTTTGTCAGCG 60.930 55.000 16.19 0.00 0.00 5.18
105 106 7.106890 TCACACCATTTGATTTTATACGGAGA 58.893 34.615 0.00 0.00 0.00 3.71
106 107 7.279981 TCTCACACCATTTGATTTTATACGGAG 59.720 37.037 0.00 0.00 0.00 4.63
107 108 7.106890 TCTCACACCATTTGATTTTATACGGA 58.893 34.615 0.00 0.00 0.00 4.69
109 110 7.974675 ACTCTCACACCATTTGATTTTATACG 58.025 34.615 0.00 0.00 0.00 3.06
112 113 9.520515 ACTAACTCTCACACCATTTGATTTTAT 57.479 29.630 0.00 0.00 0.00 1.40
113 114 8.918202 ACTAACTCTCACACCATTTGATTTTA 57.082 30.769 0.00 0.00 0.00 1.52
114 115 7.823745 ACTAACTCTCACACCATTTGATTTT 57.176 32.000 0.00 0.00 0.00 1.82
265 266 2.637872 CCCCAGGCGAAGGATAAAGATA 59.362 50.000 0.00 0.00 0.00 1.98
282 283 4.207698 TGGTAATAGCTGATACTCCCCA 57.792 45.455 0.00 0.00 0.00 4.96
295 296 5.485209 GGAGTACCCCAAGATGGTAATAG 57.515 47.826 0.00 0.00 39.95 1.73
416 417 8.188139 CAGTGTGTGTTTTGAGTTTAACCTAAT 58.812 33.333 0.00 0.00 0.00 1.73
418 419 6.879993 TCAGTGTGTGTTTTGAGTTTAACCTA 59.120 34.615 0.00 0.00 0.00 3.08
430 432 6.928492 ACATTTTGTTTCTCAGTGTGTGTTTT 59.072 30.769 0.00 0.00 0.00 2.43
440 442 3.991773 CCATGCCACATTTTGTTTCTCAG 59.008 43.478 0.00 0.00 0.00 3.35
477 480 2.722094 TGTCGATATTGCTTTGGCCTT 58.278 42.857 3.32 0.00 37.74 4.35
478 481 2.418368 TGTCGATATTGCTTTGGCCT 57.582 45.000 3.32 0.00 37.74 5.19
493 496 6.688385 GTGAAATCCACATGTGAATATTGTCG 59.312 38.462 27.46 7.00 45.03 4.35
557 560 8.700439 ATGTAACCACAACACCTAAATACTTT 57.300 30.769 0.00 0.00 38.42 2.66
560 563 7.392393 AGGAATGTAACCACAACACCTAAATAC 59.608 37.037 0.00 0.00 38.42 1.89
562 565 6.311735 AGGAATGTAACCACAACACCTAAAT 58.688 36.000 0.00 0.00 38.42 1.40
569 572 4.958509 TCGTAAGGAATGTAACCACAACA 58.041 39.130 0.00 0.00 36.52 3.33
575 578 4.873827 TGAATGCTCGTAAGGAATGTAACC 59.126 41.667 0.00 0.00 38.47 2.85
578 581 7.624360 AAAATGAATGCTCGTAAGGAATGTA 57.376 32.000 0.00 0.00 38.47 2.29
627 656 1.218316 CAGGTTACTCCCGGTGCTC 59.782 63.158 0.00 0.00 36.75 4.26
636 665 3.133721 AGCATCAGGTGATCAGGTTACTC 59.866 47.826 0.00 0.00 31.21 2.59
637 666 3.110705 AGCATCAGGTGATCAGGTTACT 58.889 45.455 0.00 0.00 31.21 2.24
638 667 3.550437 AGCATCAGGTGATCAGGTTAC 57.450 47.619 0.00 0.00 31.21 2.50
639 668 4.517285 GAAAGCATCAGGTGATCAGGTTA 58.483 43.478 0.00 0.00 31.21 2.85
641 670 2.356535 GGAAAGCATCAGGTGATCAGGT 60.357 50.000 0.00 0.00 31.21 4.00
643 672 2.295885 GGGAAAGCATCAGGTGATCAG 58.704 52.381 0.00 0.00 31.21 2.90
647 682 1.064463 GGATGGGAAAGCATCAGGTGA 60.064 52.381 0.00 0.00 0.00 4.02
656 691 2.472909 CGGCGAAGGATGGGAAAGC 61.473 63.158 0.00 0.00 0.00 3.51
682 722 5.745227 AGGGGTGTACAATGTTATCTTGAG 58.255 41.667 0.00 0.00 0.00 3.02
772 868 2.086426 ACGTGCCGCGCGATATATG 61.086 57.895 34.63 20.28 46.11 1.78
935 1032 2.037367 TGAGCTACGTGGGAGGCT 59.963 61.111 0.00 0.00 37.77 4.58
1059 1158 5.029654 GCCATTTTTGCAAGTCTTTGTTTG 58.970 37.500 0.00 0.00 36.65 2.93
1341 1455 0.939577 CGCTGTGCACGTAGAACACT 60.940 55.000 13.13 0.00 37.64 3.55
1368 1482 1.006571 AGCGTTCGTTCATGGACGT 60.007 52.632 25.27 3.44 43.23 4.34
1370 1484 0.438830 GACAGCGTTCGTTCATGGAC 59.561 55.000 0.00 0.00 0.00 4.02
1485 1601 3.690460 CTGTATTTCCAGGGAGCTTGTT 58.310 45.455 0.00 0.00 0.00 2.83
1494 1610 1.757118 TCTCCTCGCTGTATTTCCAGG 59.243 52.381 0.00 0.00 32.92 4.45
1501 1617 1.669779 GTACACGTCTCCTCGCTGTAT 59.330 52.381 0.00 0.00 33.71 2.29
1599 1715 1.236616 TGATGGCGTTGCTGGTGAAG 61.237 55.000 0.00 0.00 0.00 3.02
1660 1776 6.479990 CGCAAGAATGAATAAGTAGATCACCA 59.520 38.462 0.00 0.00 43.02 4.17
1681 1800 1.810755 ACTCACTCGTCAGTATCGCAA 59.189 47.619 0.00 0.00 0.00 4.85
1683 1802 2.608546 AGTACTCACTCGTCAGTATCGC 59.391 50.000 0.00 0.00 0.00 4.58
1685 1804 4.731193 GCCAAGTACTCACTCGTCAGTATC 60.731 50.000 0.00 0.00 32.29 2.24
1686 1805 3.128938 GCCAAGTACTCACTCGTCAGTAT 59.871 47.826 0.00 0.00 32.29 2.12
1687 1806 2.486982 GCCAAGTACTCACTCGTCAGTA 59.513 50.000 0.00 0.00 32.29 2.74
1710 1839 1.826720 CTTGGGGTGCTGCAATATTGT 59.173 47.619 16.61 0.00 0.00 2.71
1712 1841 2.102578 GACTTGGGGTGCTGCAATATT 58.897 47.619 2.77 0.00 0.00 1.28
1713 1842 1.005805 TGACTTGGGGTGCTGCAATAT 59.994 47.619 2.77 0.00 0.00 1.28
1724 1853 2.739932 CGAGTATGCTTCTGACTTGGGG 60.740 54.545 0.00 0.00 0.00 4.96
1729 1858 1.064803 CGCTCGAGTATGCTTCTGACT 59.935 52.381 15.13 0.00 0.00 3.41
1730 1859 1.202200 ACGCTCGAGTATGCTTCTGAC 60.202 52.381 15.13 0.00 0.00 3.51
1775 1904 5.941555 ATCCCTGTCGAAGAATCTTTACT 57.058 39.130 0.00 0.00 39.69 2.24
1812 1941 7.039270 ACATGTGCATACTCATTCGTACTAAA 58.961 34.615 0.00 0.00 0.00 1.85
1823 1960 3.056588 TGCAAGACATGTGCATACTCA 57.943 42.857 1.15 0.00 46.76 3.41
1930 2067 6.798482 TGGATTGTACGTTATAATCGACTGT 58.202 36.000 12.36 0.00 37.22 3.55
2101 2244 1.206371 GGCTTGCCGGAGTAGAAGTTA 59.794 52.381 5.05 0.00 0.00 2.24
2250 2394 1.457303 GAGCTACTCAACGCAACAGTG 59.543 52.381 0.00 0.00 0.00 3.66
2266 2410 0.965439 AGCACGAGAACTGAAGAGCT 59.035 50.000 0.00 0.00 0.00 4.09
2268 2412 3.902150 TGTTAGCACGAGAACTGAAGAG 58.098 45.455 0.00 0.00 0.00 2.85
2270 2414 6.706055 TTTATGTTAGCACGAGAACTGAAG 57.294 37.500 0.00 0.00 0.00 3.02
2383 2723 1.524002 CACCTGCACGATCCCTGAT 59.476 57.895 0.00 0.00 0.00 2.90
2550 2890 3.179265 CGTGGTGACCGTGATCGC 61.179 66.667 0.00 0.00 35.54 4.58
2551 2891 1.800315 GTCGTGGTGACCGTGATCG 60.800 63.158 0.00 0.00 42.04 3.69
2552 2892 1.800315 CGTCGTGGTGACCGTGATC 60.800 63.158 0.00 0.00 45.23 2.92
2553 2893 2.196382 CTCGTCGTGGTGACCGTGAT 62.196 60.000 0.00 0.00 45.23 3.06
2554 2894 2.900167 CTCGTCGTGGTGACCGTGA 61.900 63.158 0.00 0.00 45.23 4.35
2555 2895 2.428569 CTCGTCGTGGTGACCGTG 60.429 66.667 0.00 0.00 45.23 4.94
2556 2896 3.667282 CCTCGTCGTGGTGACCGT 61.667 66.667 5.15 0.00 45.23 4.83
2557 2897 4.415332 CCCTCGTCGTGGTGACCG 62.415 72.222 12.10 0.00 45.23 4.79
2558 2898 4.736896 GCCCTCGTCGTGGTGACC 62.737 72.222 12.10 0.00 45.23 4.02
2815 3155 1.118965 TCGTGTTCTTCTGCCCCAGA 61.119 55.000 0.00 0.00 38.87 3.86
2980 3329 1.360852 TCCTCCTCTCTCTGCTTCCTT 59.639 52.381 0.00 0.00 0.00 3.36
3044 3417 1.632920 CTCCCTCTGCTTCCTTTCCTT 59.367 52.381 0.00 0.00 0.00 3.36
3057 3439 0.032217 CCTCTGCTCTTCCTCCCTCT 60.032 60.000 0.00 0.00 0.00 3.69
3059 3441 0.415429 TTCCTCTGCTCTTCCTCCCT 59.585 55.000 0.00 0.00 0.00 4.20
3060 3442 1.065782 GTTTCCTCTGCTCTTCCTCCC 60.066 57.143 0.00 0.00 0.00 4.30
3088 3470 2.780010 CTCTCTCCTCTCCCTCTCTTCT 59.220 54.545 0.00 0.00 0.00 2.85
3098 3480 3.662759 TTCCTTCTCCTCTCTCCTCTC 57.337 52.381 0.00 0.00 0.00 3.20
3100 3482 3.031013 CCTTTCCTTCTCCTCTCTCCTC 58.969 54.545 0.00 0.00 0.00 3.71
3101 3483 2.657459 TCCTTTCCTTCTCCTCTCTCCT 59.343 50.000 0.00 0.00 0.00 3.69
3102 3484 3.108847 TCCTTTCCTTCTCCTCTCTCC 57.891 52.381 0.00 0.00 0.00 3.71
3103 3485 3.118775 GCTTCCTTTCCTTCTCCTCTCTC 60.119 52.174 0.00 0.00 0.00 3.20
3104 3486 2.837591 GCTTCCTTTCCTTCTCCTCTCT 59.162 50.000 0.00 0.00 0.00 3.10
3105 3487 2.569404 TGCTTCCTTTCCTTCTCCTCTC 59.431 50.000 0.00 0.00 0.00 3.20
3106 3488 2.571202 CTGCTTCCTTTCCTTCTCCTCT 59.429 50.000 0.00 0.00 0.00 3.69
3107 3489 2.569404 TCTGCTTCCTTTCCTTCTCCTC 59.431 50.000 0.00 0.00 0.00 3.71
3108 3490 2.571202 CTCTGCTTCCTTTCCTTCTCCT 59.429 50.000 0.00 0.00 0.00 3.69
3109 3491 2.355615 CCTCTGCTTCCTTTCCTTCTCC 60.356 54.545 0.00 0.00 0.00 3.71
3110 3492 2.355615 CCCTCTGCTTCCTTTCCTTCTC 60.356 54.545 0.00 0.00 0.00 2.87
3111 3493 1.632920 CCCTCTGCTTCCTTTCCTTCT 59.367 52.381 0.00 0.00 0.00 2.85
3112 3494 1.630878 TCCCTCTGCTTCCTTTCCTTC 59.369 52.381 0.00 0.00 0.00 3.46
3113 3495 1.632920 CTCCCTCTGCTTCCTTTCCTT 59.367 52.381 0.00 0.00 0.00 3.36
3114 3496 1.284313 CTCCCTCTGCTTCCTTTCCT 58.716 55.000 0.00 0.00 0.00 3.36
3115 3497 0.254462 CCTCCCTCTGCTTCCTTTCC 59.746 60.000 0.00 0.00 0.00 3.13
3116 3498 1.209261 CTCCTCCCTCTGCTTCCTTTC 59.791 57.143 0.00 0.00 0.00 2.62
3117 3499 1.284313 CTCCTCCCTCTGCTTCCTTT 58.716 55.000 0.00 0.00 0.00 3.11
3118 3500 0.620121 CCTCCTCCCTCTGCTTCCTT 60.620 60.000 0.00 0.00 0.00 3.36
3119 3501 1.002792 CCTCCTCCCTCTGCTTCCT 59.997 63.158 0.00 0.00 0.00 3.36
3120 3502 0.618968 TTCCTCCTCCCTCTGCTTCC 60.619 60.000 0.00 0.00 0.00 3.46
3121 3503 0.829990 CTTCCTCCTCCCTCTGCTTC 59.170 60.000 0.00 0.00 0.00 3.86
3122 3504 0.415429 TCTTCCTCCTCCCTCTGCTT 59.585 55.000 0.00 0.00 0.00 3.91
3123 3505 0.032217 CTCTTCCTCCTCCCTCTGCT 60.032 60.000 0.00 0.00 0.00 4.24
3124 3506 0.032615 TCTCTTCCTCCTCCCTCTGC 60.033 60.000 0.00 0.00 0.00 4.26
3125 3507 1.411501 CCTCTCTTCCTCCTCCCTCTG 60.412 61.905 0.00 0.00 0.00 3.35
3126 3508 0.933700 CCTCTCTTCCTCCTCCCTCT 59.066 60.000 0.00 0.00 0.00 3.69
3127 3509 0.105709 CCCTCTCTTCCTCCTCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
3128 3510 2.023532 CCCTCTCTTCCTCCTCCCT 58.976 63.158 0.00 0.00 0.00 4.20
3129 3511 1.764454 GCCCTCTCTTCCTCCTCCC 60.764 68.421 0.00 0.00 0.00 4.30
3130 3512 2.131067 CGCCCTCTCTTCCTCCTCC 61.131 68.421 0.00 0.00 0.00 4.30
3131 3513 1.076632 TCGCCCTCTCTTCCTCCTC 60.077 63.158 0.00 0.00 0.00 3.71
3132 3514 1.076339 CTCGCCCTCTCTTCCTCCT 60.076 63.158 0.00 0.00 0.00 3.69
3133 3515 2.131067 CCTCGCCCTCTCTTCCTCC 61.131 68.421 0.00 0.00 0.00 4.30
3134 3516 1.076632 TCCTCGCCCTCTCTTCCTC 60.077 63.158 0.00 0.00 0.00 3.71
3135 3517 1.076339 CTCCTCGCCCTCTCTTCCT 60.076 63.158 0.00 0.00 0.00 3.36
3136 3518 1.076632 TCTCCTCGCCCTCTCTTCC 60.077 63.158 0.00 0.00 0.00 3.46
3137 3519 0.106918 TCTCTCCTCGCCCTCTCTTC 60.107 60.000 0.00 0.00 0.00 2.87
3138 3520 0.106719 CTCTCTCCTCGCCCTCTCTT 60.107 60.000 0.00 0.00 0.00 2.85
3139 3521 0.986019 TCTCTCTCCTCGCCCTCTCT 60.986 60.000 0.00 0.00 0.00 3.10
3140 3522 0.106918 TTCTCTCTCCTCGCCCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
3141 3523 0.106719 CTTCTCTCTCCTCGCCCTCT 60.107 60.000 0.00 0.00 0.00 3.69
3142 3524 1.106944 CCTTCTCTCTCCTCGCCCTC 61.107 65.000 0.00 0.00 0.00 4.30
3143 3525 1.076339 CCTTCTCTCTCCTCGCCCT 60.076 63.158 0.00 0.00 0.00 5.19
3144 3526 0.684805 TTCCTTCTCTCTCCTCGCCC 60.685 60.000 0.00 0.00 0.00 6.13
3145 3527 1.136110 CTTTCCTTCTCTCTCCTCGCC 59.864 57.143 0.00 0.00 0.00 5.54
3146 3528 1.136110 CCTTTCCTTCTCTCTCCTCGC 59.864 57.143 0.00 0.00 0.00 5.03
3147 3529 2.729194 TCCTTTCCTTCTCTCTCCTCG 58.271 52.381 0.00 0.00 0.00 4.63
3148 3530 3.450817 CCTTCCTTTCCTTCTCTCTCCTC 59.549 52.174 0.00 0.00 0.00 3.71
3149 3531 3.078305 TCCTTCCTTTCCTTCTCTCTCCT 59.922 47.826 0.00 0.00 0.00 3.69
3150 3532 3.445987 TCCTTCCTTTCCTTCTCTCTCC 58.554 50.000 0.00 0.00 0.00 3.71
3151 3533 4.349365 TCTCCTTCCTTTCCTTCTCTCTC 58.651 47.826 0.00 0.00 0.00 3.20
3152 3534 4.352893 CTCTCCTTCCTTTCCTTCTCTCT 58.647 47.826 0.00 0.00 0.00 3.10
3153 3535 3.450817 CCTCTCCTTCCTTTCCTTCTCTC 59.549 52.174 0.00 0.00 0.00 3.20
3154 3536 3.449918 CCTCTCCTTCCTTTCCTTCTCT 58.550 50.000 0.00 0.00 0.00 3.10
3155 3537 2.503765 CCCTCTCCTTCCTTTCCTTCTC 59.496 54.545 0.00 0.00 0.00 2.87
3156 3538 2.114506 TCCCTCTCCTTCCTTTCCTTCT 59.885 50.000 0.00 0.00 0.00 2.85
3157 3539 2.503765 CTCCCTCTCCTTCCTTTCCTTC 59.496 54.545 0.00 0.00 0.00 3.46
3158 3540 2.556766 CTCCCTCTCCTTCCTTTCCTT 58.443 52.381 0.00 0.00 0.00 3.36
3159 3541 1.274126 CCTCCCTCTCCTTCCTTTCCT 60.274 57.143 0.00 0.00 0.00 3.36
3160 3542 1.208706 CCTCCCTCTCCTTCCTTTCC 58.791 60.000 0.00 0.00 0.00 3.13
3161 3543 2.115427 CTCCTCCCTCTCCTTCCTTTC 58.885 57.143 0.00 0.00 0.00 2.62
3162 3544 1.274126 CCTCCTCCCTCTCCTTCCTTT 60.274 57.143 0.00 0.00 0.00 3.11
3163 3545 0.341609 CCTCCTCCCTCTCCTTCCTT 59.658 60.000 0.00 0.00 0.00 3.36
3164 3546 0.556380 TCCTCCTCCCTCTCCTTCCT 60.556 60.000 0.00 0.00 0.00 3.36
3165 3547 0.340208 TTCCTCCTCCCTCTCCTTCC 59.660 60.000 0.00 0.00 0.00 3.46
3166 3548 1.289530 TCTTCCTCCTCCCTCTCCTTC 59.710 57.143 0.00 0.00 0.00 3.46
3167 3549 1.398799 TCTTCCTCCTCCCTCTCCTT 58.601 55.000 0.00 0.00 0.00 3.36
3168 3550 1.290732 CTTCTTCCTCCTCCCTCTCCT 59.709 57.143 0.00 0.00 0.00 3.69
3169 3551 1.788229 CTTCTTCCTCCTCCCTCTCC 58.212 60.000 0.00 0.00 0.00 3.71
3170 3552 1.119684 GCTTCTTCCTCCTCCCTCTC 58.880 60.000 0.00 0.00 0.00 3.20
3171 3553 0.415429 TGCTTCTTCCTCCTCCCTCT 59.585 55.000 0.00 0.00 0.00 3.69
3172 3554 0.829990 CTGCTTCTTCCTCCTCCCTC 59.170 60.000 0.00 0.00 0.00 4.30
3173 3555 1.271127 GCTGCTTCTTCCTCCTCCCT 61.271 60.000 0.00 0.00 0.00 4.20
3174 3556 1.223211 GCTGCTTCTTCCTCCTCCC 59.777 63.158 0.00 0.00 0.00 4.30
3175 3557 1.153469 CGCTGCTTCTTCCTCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
3176 3558 0.179113 CTCGCTGCTTCTTCCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
3177 3559 1.612395 CCTCGCTGCTTCTTCCTCCT 61.612 60.000 0.00 0.00 0.00 3.69
3178 3560 1.153469 CCTCGCTGCTTCTTCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
3179 3561 0.179113 CTCCTCGCTGCTTCTTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
3180 3562 1.612395 CCTCCTCGCTGCTTCTTCCT 61.612 60.000 0.00 0.00 0.00 3.36
3181 3563 1.153469 CCTCCTCGCTGCTTCTTCC 60.153 63.158 0.00 0.00 0.00 3.46
3182 3564 1.153469 CCCTCCTCGCTGCTTCTTC 60.153 63.158 0.00 0.00 0.00 2.87
3183 3565 1.610673 TCCCTCCTCGCTGCTTCTT 60.611 57.895 0.00 0.00 0.00 2.52
3184 3566 2.038007 TCCCTCCTCGCTGCTTCT 59.962 61.111 0.00 0.00 0.00 2.85
3185 3567 2.498726 CTCCCTCCTCGCTGCTTC 59.501 66.667 0.00 0.00 0.00 3.86
3186 3568 3.780173 GCTCCCTCCTCGCTGCTT 61.780 66.667 0.00 0.00 0.00 3.91
3188 3570 4.087892 TTGCTCCCTCCTCGCTGC 62.088 66.667 0.00 0.00 0.00 5.25
3189 3571 1.892819 TTCTTGCTCCCTCCTCGCTG 61.893 60.000 0.00 0.00 0.00 5.18
3190 3572 1.610673 TTCTTGCTCCCTCCTCGCT 60.611 57.895 0.00 0.00 0.00 4.93
3191 3573 1.153469 CTTCTTGCTCCCTCCTCGC 60.153 63.158 0.00 0.00 0.00 5.03
3192 3574 0.459489 CTCTTCTTGCTCCCTCCTCG 59.541 60.000 0.00 0.00 0.00 4.63
3229 3659 1.662686 CACCTTCTTCCTCCTCCCTT 58.337 55.000 0.00 0.00 0.00 3.95
3337 3779 0.752009 CTTCCTCCCTCGGATCGTCA 60.752 60.000 0.00 0.00 32.02 4.35
3362 3804 4.150454 CTCCTCCCTCCTCCGCCT 62.150 72.222 0.00 0.00 0.00 5.52
3373 3818 3.157949 CCGCCCTCTTCCTCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
3403 3848 1.524165 CGGATCGTCTCCTCGTCCT 60.524 63.158 5.48 0.00 42.47 3.85
3439 3884 1.710996 CCTCCTCTCTCCTCCGCCTA 61.711 65.000 0.00 0.00 0.00 3.93
3443 3888 1.150536 CCTCCTCCTCTCTCCTCCG 59.849 68.421 0.00 0.00 0.00 4.63
3540 3994 1.066787 GGTAGCGCTTCTTCAGGTTCT 60.067 52.381 18.68 0.00 0.00 3.01
3599 4059 3.119096 GAAGTCTGGAACGGCGGC 61.119 66.667 13.24 0.00 32.53 6.53
3600 4060 2.434359 GGAAGTCTGGAACGGCGG 60.434 66.667 13.24 0.00 32.53 6.13
3601 4061 1.738099 CTGGAAGTCTGGAACGGCG 60.738 63.158 4.80 4.80 32.53 6.46
3602 4062 4.285851 CTGGAAGTCTGGAACGGC 57.714 61.111 0.00 0.00 32.53 5.68
3613 4073 1.230635 CCGTGCAAGGTGACTGGAAG 61.231 60.000 10.93 0.00 42.68 3.46
3632 4092 1.414550 GGGAATGGGTAGAGCAGAGAC 59.585 57.143 0.00 0.00 0.00 3.36
3673 4133 0.620556 ACAACTAGGATGGCCACCAG 59.379 55.000 21.71 18.17 36.75 4.00
3724 4186 1.138661 ACGGACCCAACAAAACTACGA 59.861 47.619 0.00 0.00 0.00 3.43
3725 4187 1.528161 GACGGACCCAACAAAACTACG 59.472 52.381 0.00 0.00 0.00 3.51
3770 4233 6.424032 TCTTCTTCTATACACCAGCTACAGA 58.576 40.000 0.00 0.00 0.00 3.41
3778 4241 5.337571 CCACAAGCTCTTCTTCTATACACCA 60.338 44.000 0.00 0.00 31.27 4.17
3786 4249 4.880696 GCATAATCCACAAGCTCTTCTTCT 59.119 41.667 0.00 0.00 31.27 2.85
3787 4250 4.036144 GGCATAATCCACAAGCTCTTCTTC 59.964 45.833 0.00 0.00 31.27 2.87
3788 4251 3.950395 GGCATAATCCACAAGCTCTTCTT 59.050 43.478 0.00 0.00 34.78 2.52
3813 4279 7.433131 TGAACAGCTCCTTTATTTATACGTACG 59.567 37.037 15.01 15.01 0.00 3.67
3814 4280 8.638685 TGAACAGCTCCTTTATTTATACGTAC 57.361 34.615 0.00 0.00 0.00 3.67
3815 4281 9.472361 GATGAACAGCTCCTTTATTTATACGTA 57.528 33.333 0.00 0.00 0.00 3.57
3816 4282 7.169308 CGATGAACAGCTCCTTTATTTATACGT 59.831 37.037 0.00 0.00 0.00 3.57
3850 4316 0.250858 CACCAGTGGTCAGCATCCAA 60.251 55.000 13.31 0.00 36.68 3.53
3907 4384 7.857389 TCTTTCACGATTTCTTCAATTTCACTG 59.143 33.333 0.00 0.00 0.00 3.66
3916 4393 5.468540 TCCTCTCTTTCACGATTTCTTCA 57.531 39.130 0.00 0.00 0.00 3.02
3917 4394 5.696724 TGTTCCTCTCTTTCACGATTTCTTC 59.303 40.000 0.00 0.00 0.00 2.87
3921 4398 6.884280 ATTTGTTCCTCTCTTTCACGATTT 57.116 33.333 0.00 0.00 0.00 2.17
3924 4401 5.611374 AGAATTTGTTCCTCTCTTTCACGA 58.389 37.500 0.00 0.00 0.00 4.35
3925 4402 5.698545 AGAGAATTTGTTCCTCTCTTTCACG 59.301 40.000 0.00 0.00 34.50 4.35
3926 4403 8.785329 ATAGAGAATTTGTTCCTCTCTTTCAC 57.215 34.615 6.17 0.00 38.54 3.18
3927 4404 8.820831 AGATAGAGAATTTGTTCCTCTCTTTCA 58.179 33.333 16.09 0.00 37.71 2.69
3928 4405 9.097257 CAGATAGAGAATTTGTTCCTCTCTTTC 57.903 37.037 6.17 8.04 38.54 2.62
3936 4438 5.431765 TCCAGCAGATAGAGAATTTGTTCC 58.568 41.667 0.00 0.00 0.00 3.62
3950 4452 2.681976 CGGGATGAACTTTCCAGCAGAT 60.682 50.000 0.00 0.00 34.77 2.90
3952 4454 1.089920 CGGGATGAACTTTCCAGCAG 58.910 55.000 0.00 0.00 34.77 4.24
3965 4467 1.754803 TGTAGTAGCAAGGACGGGATG 59.245 52.381 0.00 0.00 0.00 3.51
3966 4468 2.154567 TGTAGTAGCAAGGACGGGAT 57.845 50.000 0.00 0.00 0.00 3.85
3967 4469 1.754803 CATGTAGTAGCAAGGACGGGA 59.245 52.381 0.00 0.00 0.00 5.14
3968 4470 1.480954 ACATGTAGTAGCAAGGACGGG 59.519 52.381 0.00 0.00 0.00 5.28
3969 4471 2.961526 ACATGTAGTAGCAAGGACGG 57.038 50.000 0.00 0.00 0.00 4.79
3970 4472 4.740268 TGTAACATGTAGTAGCAAGGACG 58.260 43.478 0.00 0.00 0.00 4.79
3971 4473 5.721232 ACTGTAACATGTAGTAGCAAGGAC 58.279 41.667 0.00 0.00 0.00 3.85
3972 4474 5.995565 ACTGTAACATGTAGTAGCAAGGA 57.004 39.130 0.00 0.00 0.00 3.36
3973 4475 6.874134 AGAAACTGTAACATGTAGTAGCAAGG 59.126 38.462 0.00 0.00 0.00 3.61
3974 4476 7.598869 TCAGAAACTGTAACATGTAGTAGCAAG 59.401 37.037 0.00 0.00 32.61 4.01
3975 4477 7.438564 TCAGAAACTGTAACATGTAGTAGCAA 58.561 34.615 0.00 0.00 32.61 3.91
3976 4478 6.988522 TCAGAAACTGTAACATGTAGTAGCA 58.011 36.000 0.00 0.00 32.61 3.49
3977 4479 8.480643 AATCAGAAACTGTAACATGTAGTAGC 57.519 34.615 0.00 0.00 32.61 3.58
3980 4482 9.424319 CAGTAATCAGAAACTGTAACATGTAGT 57.576 33.333 0.00 0.00 38.62 2.73
3991 4493 5.008019 ACAACAGCACAGTAATCAGAAACTG 59.992 40.000 12.62 12.62 46.84 3.16
3992 4494 5.126067 ACAACAGCACAGTAATCAGAAACT 58.874 37.500 0.00 0.00 0.00 2.66
3994 4496 5.588246 TCAACAACAGCACAGTAATCAGAAA 59.412 36.000 0.00 0.00 0.00 2.52
3995 4497 5.122519 TCAACAACAGCACAGTAATCAGAA 58.877 37.500 0.00 0.00 0.00 3.02
3996 4498 4.702831 TCAACAACAGCACAGTAATCAGA 58.297 39.130 0.00 0.00 0.00 3.27
3998 4500 6.183360 ACAATTCAACAACAGCACAGTAATCA 60.183 34.615 0.00 0.00 0.00 2.57
3999 4501 6.208644 ACAATTCAACAACAGCACAGTAATC 58.791 36.000 0.00 0.00 0.00 1.75
4000 4502 6.147864 ACAATTCAACAACAGCACAGTAAT 57.852 33.333 0.00 0.00 0.00 1.89
4001 4503 5.574891 ACAATTCAACAACAGCACAGTAA 57.425 34.783 0.00 0.00 0.00 2.24
4004 4506 4.437495 CGTAACAATTCAACAACAGCACAG 59.563 41.667 0.00 0.00 0.00 3.66
4005 4507 4.142578 ACGTAACAATTCAACAACAGCACA 60.143 37.500 0.00 0.00 0.00 4.57
4006 4508 4.347813 ACGTAACAATTCAACAACAGCAC 58.652 39.130 0.00 0.00 0.00 4.40
4008 4510 5.942325 AAACGTAACAATTCAACAACAGC 57.058 34.783 0.00 0.00 0.00 4.40
4009 4511 7.499438 TCAAAACGTAACAATTCAACAACAG 57.501 32.000 0.00 0.00 0.00 3.16
4010 4512 7.755373 TCATCAAAACGTAACAATTCAACAACA 59.245 29.630 0.00 0.00 0.00 3.33
4011 4513 8.109843 TCATCAAAACGTAACAATTCAACAAC 57.890 30.769 0.00 0.00 0.00 3.32
4012 4514 7.971168 ACTCATCAAAACGTAACAATTCAACAA 59.029 29.630 0.00 0.00 0.00 2.83
4013 4515 7.476667 ACTCATCAAAACGTAACAATTCAACA 58.523 30.769 0.00 0.00 0.00 3.33
4014 4516 7.908193 ACTCATCAAAACGTAACAATTCAAC 57.092 32.000 0.00 0.00 0.00 3.18
4016 4518 8.832521 AGTAACTCATCAAAACGTAACAATTCA 58.167 29.630 0.00 0.00 0.00 2.57
4017 4519 9.314501 GAGTAACTCATCAAAACGTAACAATTC 57.685 33.333 0.00 0.00 0.00 2.17
4034 5024 9.725019 ATTTCATGTCTACAAATGAGTAACTCA 57.275 29.630 0.00 0.00 44.99 3.41
4036 5026 9.725019 TGATTTCATGTCTACAAATGAGTAACT 57.275 29.630 0.00 0.00 34.43 2.24
4037 5027 9.979270 CTGATTTCATGTCTACAAATGAGTAAC 57.021 33.333 0.00 0.00 34.43 2.50
4038 5028 9.725019 ACTGATTTCATGTCTACAAATGAGTAA 57.275 29.630 7.00 0.00 33.75 2.24
4039 5029 9.725019 AACTGATTTCATGTCTACAAATGAGTA 57.275 29.630 8.58 0.00 34.21 2.59
4041 5031 7.966753 CCAACTGATTTCATGTCTACAAATGAG 59.033 37.037 0.00 0.00 34.43 2.90
4065 5059 4.927267 AATTCACTGTACCTGGAATCCA 57.073 40.909 0.48 0.48 0.00 3.41
4067 5077 8.041323 TCTTCTAAATTCACTGTACCTGGAATC 58.959 37.037 0.00 0.00 0.00 2.52
4093 5103 9.516314 GCATCTATTCGTAATTTTAAAGCCTTT 57.484 29.630 0.00 0.00 0.00 3.11
4127 5137 1.333931 TCGTAGTAGGAGCATCGCTTG 59.666 52.381 0.00 0.00 39.88 4.01
4128 5138 1.334243 GTCGTAGTAGGAGCATCGCTT 59.666 52.381 0.00 0.00 39.88 4.68
4183 5217 8.997621 TCACTATACAACACAAATACTTCCTC 57.002 34.615 0.00 0.00 0.00 3.71
4201 5235 2.028112 GCCATCGCTGGGAATCACTATA 60.028 50.000 7.52 0.00 43.36 1.31
4225 5259 3.932545 TTAATGGTTTTGCACGCTCAT 57.067 38.095 0.00 0.00 0.00 2.90
4226 5260 3.932545 ATTAATGGTTTTGCACGCTCA 57.067 38.095 0.00 0.00 0.00 4.26
4227 5261 4.102649 GGTATTAATGGTTTTGCACGCTC 58.897 43.478 0.00 0.00 0.00 5.03
4228 5262 3.119280 GGGTATTAATGGTTTTGCACGCT 60.119 43.478 0.00 0.00 0.00 5.07
4229 5263 3.183754 GGGTATTAATGGTTTTGCACGC 58.816 45.455 0.00 0.00 0.00 5.34
4230 5264 4.082463 AGTGGGTATTAATGGTTTTGCACG 60.082 41.667 0.00 0.00 0.00 5.34
4231 5265 5.167845 CAGTGGGTATTAATGGTTTTGCAC 58.832 41.667 0.00 0.00 0.00 4.57
4263 5297 3.611986 GCTATGCGATCAGTTATGCTCTC 59.388 47.826 0.00 0.00 0.00 3.20
4291 5360 2.531771 TGACTGATACTTCCGGAACCA 58.468 47.619 14.35 3.87 0.00 3.67
4355 5424 7.267857 TCGATGATGTCTGTGATTTAACTCAT 58.732 34.615 0.00 0.00 0.00 2.90
4356 5425 6.630071 TCGATGATGTCTGTGATTTAACTCA 58.370 36.000 0.00 0.00 0.00 3.41
4374 5443 5.690409 GTCTGTTACTCAGTTGTTTCGATGA 59.310 40.000 0.00 0.00 43.97 2.92
4389 5458 3.426615 CTGTCTGAGGGAGTCTGTTACT 58.573 50.000 0.00 0.00 42.80 2.24
4457 5527 1.114119 TTGCTGGATTGTGCCAAGCA 61.114 50.000 5.71 0.00 39.00 3.91
4519 5589 1.438651 TCAGGAAAACGCTTCCATCG 58.561 50.000 16.82 7.01 41.00 3.84
4526 5596 5.148651 ACAACTACTATCAGGAAAACGCT 57.851 39.130 0.00 0.00 0.00 5.07
4533 5604 6.375174 TGCTACGTTTACAACTACTATCAGGA 59.625 38.462 0.00 0.00 0.00 3.86
4543 5614 2.140717 GCACCTGCTACGTTTACAACT 58.859 47.619 0.00 0.00 38.21 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.