Multiple sequence alignment - TraesCS4B01G261500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G261500 chr4B 100.000 4947 0 0 1 4947 530471550 530476496 0.000000e+00 9136
1 TraesCS4B01G261500 chr4D 88.085 2543 155 69 1 2506 432768130 432765699 0.000000e+00 2881
2 TraesCS4B01G261500 chr4D 84.330 1672 161 60 2892 4547 432765176 432763590 0.000000e+00 1543
3 TraesCS4B01G261500 chr4D 90.493 284 18 4 4661 4942 432763477 432763201 2.810000e-97 366
4 TraesCS4B01G261500 chr4D 89.781 274 18 5 2633 2906 432765461 432765198 4.740000e-90 342
5 TraesCS4B01G261500 chr4A 86.239 1388 99 31 1 1353 34048047 34046717 0.000000e+00 1421
6 TraesCS4B01G261500 chr4A 91.115 1058 70 15 1453 2506 34046632 34045595 0.000000e+00 1411
7 TraesCS4B01G261500 chr4A 89.464 1082 82 18 2672 3739 34045314 34044251 0.000000e+00 1338
8 TraesCS4B01G261500 chr4A 80.172 696 82 39 3725 4401 34043113 34042455 2.080000e-128 470
9 TraesCS4B01G261500 chr4A 89.320 206 17 2 4720 4924 34042152 34041951 2.290000e-63 254


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G261500 chr4B 530471550 530476496 4946 False 9136.0 9136 100.00000 1 4947 1 chr4B.!!$F1 4946
1 TraesCS4B01G261500 chr4D 432763201 432768130 4929 True 1283.0 2881 88.17225 1 4942 4 chr4D.!!$R1 4941
2 TraesCS4B01G261500 chr4A 34041951 34048047 6096 True 978.8 1421 87.26200 1 4924 5 chr4A.!!$R1 4923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 879 0.250989 TTTGAAGATTTCGCGGGGGT 60.251 50.0 6.13 0.0 0.00 4.95 F
1722 1834 0.041839 GCGCGCATAATTCACTCCTG 60.042 55.0 29.10 0.0 0.00 3.86 F
3160 3535 0.108138 ATCGGGAGAAACTGCGAAGG 60.108 55.0 0.00 0.0 45.37 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 1885 1.866601 GTTTCAACATTTGGCCTGCAC 59.133 47.619 3.32 0.0 0.00 4.57 R
3676 4059 0.817654 TAGACAGGACATGACAGGCG 59.182 55.000 0.00 0.0 0.00 5.52 R
4444 5989 0.031994 CAACTCAAGTTTTGGGCGGG 59.968 55.000 0.00 0.0 35.83 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.892130 ATACTTCATTCTGAAAGTAAAGTAGGG 57.108 33.333 15.73 0.00 35.73 3.53
93 94 5.551760 CAACACCCATTGCTTCTAGTAAG 57.448 43.478 0.00 0.00 0.00 2.34
117 118 5.270083 CCAATTAACATGAAGCGCGATTTA 58.730 37.500 12.37 7.79 0.00 1.40
150 151 6.067217 AGCATTTCCTTAGTGACAATACCT 57.933 37.500 0.00 0.00 0.00 3.08
201 202 5.477607 AGTACACTACAACATACCTGCAA 57.522 39.130 0.00 0.00 0.00 4.08
212 213 7.731054 ACAACATACCTGCAAAAATTAGGAAA 58.269 30.769 0.00 0.00 35.55 3.13
213 214 7.655732 ACAACATACCTGCAAAAATTAGGAAAC 59.344 33.333 0.00 0.00 35.55 2.78
215 216 7.378181 ACATACCTGCAAAAATTAGGAAACAG 58.622 34.615 0.00 0.00 35.55 3.16
216 217 5.869649 ACCTGCAAAAATTAGGAAACAGT 57.130 34.783 0.00 0.00 35.55 3.55
217 218 6.969993 ACCTGCAAAAATTAGGAAACAGTA 57.030 33.333 0.00 0.00 35.55 2.74
218 219 6.745116 ACCTGCAAAAATTAGGAAACAGTAC 58.255 36.000 0.00 0.00 35.55 2.73
226 227 5.700402 ATTAGGAAACAGTACAGGAGCAT 57.300 39.130 0.00 0.00 0.00 3.79
231 232 5.248477 AGGAAACAGTACAGGAGCATTTAGA 59.752 40.000 0.00 0.00 0.00 2.10
232 233 5.938125 GGAAACAGTACAGGAGCATTTAGAA 59.062 40.000 0.00 0.00 0.00 2.10
233 234 6.599638 GGAAACAGTACAGGAGCATTTAGAAT 59.400 38.462 0.00 0.00 0.00 2.40
234 235 7.121315 GGAAACAGTACAGGAGCATTTAGAATT 59.879 37.037 0.00 0.00 0.00 2.17
235 236 9.162764 GAAACAGTACAGGAGCATTTAGAATTA 57.837 33.333 0.00 0.00 0.00 1.40
236 237 8.723942 AACAGTACAGGAGCATTTAGAATTAG 57.276 34.615 0.00 0.00 0.00 1.73
237 238 8.079211 ACAGTACAGGAGCATTTAGAATTAGA 57.921 34.615 0.00 0.00 0.00 2.10
247 248 9.439537 GAGCATTTAGAATTAGAAAAATCGGTC 57.560 33.333 0.00 0.00 0.00 4.79
261 262 2.254546 TCGGTCTGTGCATTGACTTT 57.745 45.000 17.47 0.00 34.01 2.66
276 277 6.580041 GCATTGACTTTACAGAAATCAGTGTG 59.420 38.462 0.00 0.00 30.92 3.82
337 340 3.686016 TGGTATGAAACTCTGAAAGGGC 58.314 45.455 0.00 0.00 38.84 5.19
338 341 3.330701 TGGTATGAAACTCTGAAAGGGCT 59.669 43.478 0.00 0.00 38.84 5.19
339 342 3.691609 GGTATGAAACTCTGAAAGGGCTG 59.308 47.826 0.00 0.00 38.84 4.85
340 343 1.609208 TGAAACTCTGAAAGGGCTGC 58.391 50.000 0.00 0.00 38.84 5.25
341 344 1.133823 TGAAACTCTGAAAGGGCTGCA 60.134 47.619 0.50 0.00 38.84 4.41
342 345 1.268079 GAAACTCTGAAAGGGCTGCAC 59.732 52.381 0.50 0.00 38.84 4.57
348 351 2.123769 AAAGGGCTGCACTGCACA 60.124 55.556 4.56 0.00 39.15 4.57
359 362 4.324402 GCTGCACTGCACATTGTTTTATAC 59.676 41.667 0.00 0.00 33.79 1.47
360 363 5.702865 CTGCACTGCACATTGTTTTATACT 58.297 37.500 0.00 0.00 33.79 2.12
361 364 6.622679 GCTGCACTGCACATTGTTTTATACTA 60.623 38.462 0.00 0.00 33.79 1.82
363 366 5.732647 GCACTGCACATTGTTTTATACTACG 59.267 40.000 0.00 0.00 0.00 3.51
364 367 6.619874 GCACTGCACATTGTTTTATACTACGT 60.620 38.462 0.00 0.00 0.00 3.57
365 368 7.412129 GCACTGCACATTGTTTTATACTACGTA 60.412 37.037 0.00 0.00 0.00 3.57
366 369 7.896274 CACTGCACATTGTTTTATACTACGTAC 59.104 37.037 0.00 0.00 0.00 3.67
371 374 8.466799 CACATTGTTTTATACTACGTACTAGCG 58.533 37.037 0.00 0.00 37.94 4.26
424 428 4.096681 TGAGCTTAGATGTCCTTGGAAGA 58.903 43.478 0.00 0.00 0.00 2.87
428 432 4.509600 GCTTAGATGTCCTTGGAAGAATCG 59.490 45.833 0.00 0.00 0.00 3.34
453 457 1.675552 ACCCAAACGTGAGAACTTGG 58.324 50.000 7.35 7.35 38.04 3.61
471 475 1.687297 GGGCGAGGAAGAAGGGGTAG 61.687 65.000 0.00 0.00 0.00 3.18
596 600 4.888325 ATCGCCTCCTCCCCCTGG 62.888 72.222 0.00 0.00 0.00 4.45
848 879 0.250989 TTTGAAGATTTCGCGGGGGT 60.251 50.000 6.13 0.00 0.00 4.95
850 881 0.958382 TGAAGATTTCGCGGGGGTTG 60.958 55.000 6.13 0.00 0.00 3.77
855 908 1.529152 ATTTCGCGGGGGTTGGTTTC 61.529 55.000 6.13 0.00 0.00 2.78
901 962 4.704833 GCCGCTGGTTGCTCTGGA 62.705 66.667 0.00 0.00 40.11 3.86
923 984 3.007323 GGGACCCACCGGCTAAGT 61.007 66.667 5.33 0.00 40.11 2.24
976 1043 2.933834 CCTCCCGACCCAAACCCT 60.934 66.667 0.00 0.00 0.00 4.34
1025 1092 3.441290 CTCCGACGAGCTCCGGTT 61.441 66.667 24.78 1.82 45.48 4.44
1267 1334 1.006571 GAACTCAACGCCGTGGAGA 60.007 57.895 27.51 7.82 35.75 3.71
1302 1369 1.973281 GCACCAGGTGACCATGTGG 60.973 63.158 24.96 14.46 35.23 4.17
1319 1386 5.126869 CCATGTGGCACATTGGTTTAGATTA 59.873 40.000 29.57 0.00 44.52 1.75
1322 1389 5.772672 TGTGGCACATTGGTTTAGATTAGTT 59.227 36.000 17.96 0.00 44.52 2.24
1326 1393 8.861086 TGGCACATTGGTTTAGATTAGTTTTTA 58.139 29.630 0.00 0.00 0.00 1.52
1355 1454 7.492352 TTTACTGCTGTTTCCTTCTTCTAAC 57.508 36.000 0.09 0.00 0.00 2.34
1356 1455 4.058817 ACTGCTGTTTCCTTCTTCTAACG 58.941 43.478 0.00 0.00 0.00 3.18
1364 1471 7.899973 TGTTTCCTTCTTCTAACGGTATTAGT 58.100 34.615 0.00 0.00 0.00 2.24
1379 1486 7.203910 ACGGTATTAGTTAAGAGCTGAATCAG 58.796 38.462 5.78 5.78 34.12 2.90
1382 1489 7.982354 GGTATTAGTTAAGAGCTGAATCAGTGT 59.018 37.037 12.29 0.00 33.43 3.55
1393 1501 4.320494 GCTGAATCAGTGTAAAGGTTGTGG 60.320 45.833 12.29 0.00 33.43 4.17
1400 1508 2.548480 GTGTAAAGGTTGTGGTCTGCTC 59.452 50.000 0.00 0.00 0.00 4.26
1408 1516 0.615331 TGTGGTCTGCTCATTCCTCC 59.385 55.000 0.00 0.00 0.00 4.30
1418 1526 3.776969 TGCTCATTCCTCCTTAGTGACAT 59.223 43.478 0.00 0.00 0.00 3.06
1434 1542 6.959639 AGTGACATGAACTTTACATTTGGT 57.040 33.333 0.00 0.00 0.00 3.67
1501 1611 5.984926 GTCATCAGCAAACAAGAAATTTGGA 59.015 36.000 0.00 0.00 37.49 3.53
1547 1658 7.900782 TTTAGAGAGTGGCTGTTATTAACAC 57.099 36.000 5.14 3.53 36.25 3.32
1562 1673 7.940137 TGTTATTAACACCTGGTGTCTTGTTAT 59.060 33.333 31.03 17.15 46.79 1.89
1564 1675 2.504367 ACACCTGGTGTCTTGTTATGC 58.496 47.619 26.28 0.00 43.92 3.14
1566 1677 1.271926 ACCTGGTGTCTTGTTATGCCC 60.272 52.381 0.00 0.00 0.00 5.36
1722 1834 0.041839 GCGCGCATAATTCACTCCTG 60.042 55.000 29.10 0.00 0.00 3.86
1743 1855 2.035321 GGAGGCGAAAGATCTACTGGAG 59.965 54.545 0.00 0.00 0.00 3.86
1763 1875 1.131638 TTCCTTCCGGGGATGATCAG 58.868 55.000 0.00 0.00 35.07 2.90
1773 1885 1.907936 GGGATGATCAGGGGAGATGAG 59.092 57.143 0.09 0.00 0.00 2.90
1872 1984 6.820656 ACGAGATGACTATTTGCTTTCAGAAT 59.179 34.615 0.00 0.00 0.00 2.40
1877 1989 6.475504 TGACTATTTGCTTTCAGAATCCTCA 58.524 36.000 0.00 0.00 0.00 3.86
1932 2044 7.186021 ACCAAAAATTGTACGAGTACTTCTG 57.814 36.000 13.67 0.00 37.00 3.02
1933 2045 6.077838 CCAAAAATTGTACGAGTACTTCTGC 58.922 40.000 13.67 0.00 37.00 4.26
1934 2046 5.857822 AAAATTGTACGAGTACTTCTGCC 57.142 39.130 13.67 0.00 37.00 4.85
1935 2047 4.803098 AATTGTACGAGTACTTCTGCCT 57.197 40.909 13.67 0.00 37.00 4.75
1936 2048 4.803098 ATTGTACGAGTACTTCTGCCTT 57.197 40.909 13.67 0.00 37.00 4.35
1937 2049 3.844577 TGTACGAGTACTTCTGCCTTC 57.155 47.619 13.67 0.00 37.00 3.46
1938 2050 3.418995 TGTACGAGTACTTCTGCCTTCT 58.581 45.455 13.67 0.00 37.00 2.85
1939 2051 3.825014 TGTACGAGTACTTCTGCCTTCTT 59.175 43.478 13.67 0.00 37.00 2.52
1940 2052 3.305398 ACGAGTACTTCTGCCTTCTTG 57.695 47.619 0.00 0.00 0.00 3.02
1941 2053 2.028930 ACGAGTACTTCTGCCTTCTTGG 60.029 50.000 0.00 0.00 39.35 3.61
1945 2057 3.584848 AGTACTTCTGCCTTCTTGGTGAT 59.415 43.478 0.00 0.00 38.35 3.06
1949 2061 4.225942 ACTTCTGCCTTCTTGGTGATCATA 59.774 41.667 0.00 0.00 38.35 2.15
1954 2066 7.520798 TCTGCCTTCTTGGTGATCATATTTAT 58.479 34.615 0.00 0.00 38.35 1.40
2011 2123 6.183360 GCATAAAACCCTTCTCTACCATGTTC 60.183 42.308 0.00 0.00 0.00 3.18
2024 2136 2.838202 ACCATGTTCTAGGTACCTGTGG 59.162 50.000 25.33 21.04 36.07 4.17
2046 2158 2.028112 TGTCCAAAAGAGATCCAGTCCG 60.028 50.000 0.00 0.00 0.00 4.79
2079 2191 9.965902 AATAGGATAGTCAGTGTTGAAGAAAAT 57.034 29.630 0.00 0.00 34.49 1.82
2153 2265 5.633830 AGTTGCTTTATGATGGTGAGTTG 57.366 39.130 0.00 0.00 0.00 3.16
2172 2284 4.397417 AGTTGATCATTCTTTAGTGCAGGC 59.603 41.667 0.00 0.00 0.00 4.85
2219 2333 6.881602 AGTGAACAGTCCATCCTTAATTCTTC 59.118 38.462 0.00 0.00 0.00 2.87
2222 2336 7.391554 TGAACAGTCCATCCTTAATTCTTCTTG 59.608 37.037 0.00 0.00 0.00 3.02
2296 2413 4.113354 GTTCGTGATCTCATTCCTGGTAC 58.887 47.826 0.00 0.00 0.00 3.34
2351 2468 5.601662 GTGGTATAGATCTTGCTGTGCTTA 58.398 41.667 0.00 0.00 0.00 3.09
2355 2472 7.872993 TGGTATAGATCTTGCTGTGCTTATTAC 59.127 37.037 0.00 0.00 0.00 1.89
2360 2477 3.682858 TCTTGCTGTGCTTATTACGGTTC 59.317 43.478 0.00 0.00 0.00 3.62
2381 2498 7.095607 CGGTTCTATTGGCAGATGTACTTAATC 60.096 40.741 0.00 0.00 0.00 1.75
2404 2521 5.943416 TCCGTTTATTTTGTGGATGATGTCT 59.057 36.000 0.00 0.00 0.00 3.41
2506 2623 7.359347 CCAGAAAGAAGCGTAAGTTAACTCTTC 60.359 40.741 19.69 19.69 40.10 2.87
2525 2669 6.210984 ACTCTTCTAACTTTAGATTGTCGGGT 59.789 38.462 0.00 0.00 39.36 5.28
2547 2691 4.943705 GTCTTATTGATGGCTGACTTTCCA 59.056 41.667 0.00 0.00 36.70 3.53
2599 2743 8.268850 ACATGCCTTAATTAAACTACACTGAG 57.731 34.615 0.00 0.00 0.00 3.35
2652 2880 8.376270 ACTAACTAGTTAAACTCTGGATTGCTT 58.624 33.333 15.95 0.00 31.13 3.91
2656 2884 4.829492 AGTTAAACTCTGGATTGCTTTGCT 59.171 37.500 0.00 0.00 0.00 3.91
2657 2885 5.302823 AGTTAAACTCTGGATTGCTTTGCTT 59.697 36.000 0.00 0.00 0.00 3.91
2658 2886 4.677673 AAACTCTGGATTGCTTTGCTTT 57.322 36.364 0.00 0.00 0.00 3.51
2712 3043 9.699410 ATGACCTATAATTCATGGTTCTTTTCA 57.301 29.630 0.00 0.00 31.03 2.69
2804 3135 6.910536 GAGTATCTTTTGTGGTGTCCTATG 57.089 41.667 0.00 0.00 0.00 2.23
2811 3142 7.458397 TCTTTTGTGGTGTCCTATGATTTACT 58.542 34.615 0.00 0.00 0.00 2.24
2863 3194 5.088680 TGTGTGCTGATATCATGTTCTCA 57.911 39.130 5.72 2.71 0.00 3.27
2913 3280 6.815089 TGCTTGTTGGTAGTTTCATGAAAAT 58.185 32.000 23.06 23.06 32.98 1.82
2947 3314 2.879026 GGCTAAAACGGATCCATCTTCC 59.121 50.000 13.41 0.00 0.00 3.46
3006 3381 1.671979 TGCATTGTCAGCTAGGCATC 58.328 50.000 0.00 0.00 32.90 3.91
3136 3511 3.003480 AGCGCTTCTAGTTTTGTGGATC 58.997 45.455 2.64 0.00 0.00 3.36
3160 3535 0.108138 ATCGGGAGAAACTGCGAAGG 60.108 55.000 0.00 0.00 45.37 3.46
3208 3583 2.151369 GGGAGTCAAAGACCCCACA 58.849 57.895 14.80 0.00 40.41 4.17
3241 3616 3.273919 CTGAAGGTTTGCAGCTAACAC 57.726 47.619 19.46 10.13 0.00 3.32
3242 3617 2.880890 CTGAAGGTTTGCAGCTAACACT 59.119 45.455 19.46 11.93 0.00 3.55
3245 3620 2.222027 AGGTTTGCAGCTAACACTCAC 58.778 47.619 19.46 3.91 0.00 3.51
3260 3637 3.502920 CACTCACGTGTCACCTTCTATC 58.497 50.000 16.51 0.00 36.39 2.08
3263 3640 4.281182 ACTCACGTGTCACCTTCTATCTTT 59.719 41.667 16.51 0.00 0.00 2.52
3264 3641 4.806330 TCACGTGTCACCTTCTATCTTTC 58.194 43.478 16.51 0.00 0.00 2.62
3267 3644 5.639506 CACGTGTCACCTTCTATCTTTCAAT 59.360 40.000 7.58 0.00 0.00 2.57
3271 3648 8.883731 CGTGTCACCTTCTATCTTTCAATAATT 58.116 33.333 0.00 0.00 0.00 1.40
3306 3683 6.339587 ACATTTGGTGATTTTACGATGGTT 57.660 33.333 0.00 0.00 0.00 3.67
3307 3684 6.155827 ACATTTGGTGATTTTACGATGGTTG 58.844 36.000 0.00 0.00 0.00 3.77
3309 3686 2.490115 TGGTGATTTTACGATGGTTGCC 59.510 45.455 0.00 0.00 0.00 4.52
3310 3687 2.477189 GGTGATTTTACGATGGTTGCCG 60.477 50.000 0.00 0.00 0.00 5.69
3311 3688 1.131504 TGATTTTACGATGGTTGCCGC 59.868 47.619 0.00 0.00 0.00 6.53
3339 3716 2.762887 TGTGCAATGTGGTCCTGAAAAA 59.237 40.909 0.00 0.00 0.00 1.94
3436 3813 4.353777 AGTGTCTCCTTCTTGGCTACATA 58.646 43.478 0.00 0.00 34.36 2.29
3508 3890 3.973206 TGTTTGATCTGGACCGTGTAT 57.027 42.857 0.00 0.00 0.00 2.29
3517 3899 3.132289 TCTGGACCGTGTATCCTGAAATC 59.868 47.826 0.00 0.00 40.19 2.17
3529 3911 9.862371 GTGTATCCTGAAATCGATATATTCTGT 57.138 33.333 0.00 0.00 0.00 3.41
3542 3924 6.708054 CGATATATTCTGTTCTCCTGGCTTTT 59.292 38.462 0.00 0.00 0.00 2.27
3588 3971 9.362539 CTGAATCAGGATTGAAATTTAAGGTTG 57.637 33.333 1.53 0.00 36.78 3.77
3666 4049 4.610333 TCTTCAGAGTATCCTTGCCTGTA 58.390 43.478 0.00 0.00 33.66 2.74
3676 4059 3.153919 TCCTTGCCTGTAATTTGTCACC 58.846 45.455 0.00 0.00 0.00 4.02
3677 4060 2.095263 CCTTGCCTGTAATTTGTCACCG 60.095 50.000 0.00 0.00 0.00 4.94
3678 4061 0.878416 TGCCTGTAATTTGTCACCGC 59.122 50.000 0.00 0.00 0.00 5.68
3679 4062 0.170339 GCCTGTAATTTGTCACCGCC 59.830 55.000 0.00 0.00 0.00 6.13
3680 4063 1.821216 CCTGTAATTTGTCACCGCCT 58.179 50.000 0.00 0.00 0.00 5.52
3681 4064 1.468520 CCTGTAATTTGTCACCGCCTG 59.531 52.381 0.00 0.00 0.00 4.85
3682 4065 2.151202 CTGTAATTTGTCACCGCCTGT 58.849 47.619 0.00 0.00 0.00 4.00
3683 4066 2.147958 TGTAATTTGTCACCGCCTGTC 58.852 47.619 0.00 0.00 0.00 3.51
3693 4076 1.448540 CCGCCTGTCATGTCCTGTC 60.449 63.158 0.00 0.00 0.00 3.51
3697 4080 2.159043 CGCCTGTCATGTCCTGTCTATT 60.159 50.000 0.00 0.00 0.00 1.73
3698 4081 3.679917 CGCCTGTCATGTCCTGTCTATTT 60.680 47.826 0.00 0.00 0.00 1.40
3732 5267 9.579768 TTAATAATTTGCAACGAAGCATATGTT 57.420 25.926 0.00 0.00 45.19 2.71
3749 5284 6.692681 GCATATGTTCTGTCGTAAATGCAATT 59.307 34.615 4.29 0.00 38.98 2.32
3761 5296 6.582295 TCGTAAATGCAATTCAGCTCTTTTTC 59.418 34.615 0.00 0.00 33.67 2.29
3762 5297 6.583806 CGTAAATGCAATTCAGCTCTTTTTCT 59.416 34.615 0.00 0.00 33.67 2.52
3763 5298 7.115378 CGTAAATGCAATTCAGCTCTTTTTCTT 59.885 33.333 0.00 0.00 33.67 2.52
3772 5307 6.408858 TCAGCTCTTTTTCTTATAGTTGCG 57.591 37.500 0.00 0.00 0.00 4.85
3775 5310 5.122396 AGCTCTTTTTCTTATAGTTGCGGTG 59.878 40.000 0.00 0.00 0.00 4.94
3785 5320 7.045416 TCTTATAGTTGCGGTGTGATTTATGT 58.955 34.615 0.00 0.00 0.00 2.29
3835 5370 6.150332 TCTTTCAGAATATATCCCTGGTCCA 58.850 40.000 12.45 0.00 0.00 4.02
3966 5507 3.920231 AACTGATAGGCAAGAGCATGA 57.080 42.857 0.00 0.00 44.61 3.07
3969 5510 5.758790 ACTGATAGGCAAGAGCATGATAT 57.241 39.130 0.00 0.00 44.61 1.63
3970 5511 6.864151 ACTGATAGGCAAGAGCATGATATA 57.136 37.500 0.00 0.00 44.61 0.86
3980 5521 6.148315 GCAAGAGCATGATATATGCACAGTTA 59.852 38.462 13.60 0.00 46.77 2.24
4008 5550 6.137000 CAATTTCGTATCGACGTAATGCTTTG 59.863 38.462 3.61 0.00 45.01 2.77
4009 5551 2.875633 CGTATCGACGTAATGCTTTGC 58.124 47.619 0.00 0.00 44.31 3.68
4010 5552 2.347292 CGTATCGACGTAATGCTTTGCC 60.347 50.000 0.00 0.00 44.31 4.52
4011 5553 2.024176 ATCGACGTAATGCTTTGCCT 57.976 45.000 0.00 0.00 0.00 4.75
4014 5556 2.158841 TCGACGTAATGCTTTGCCTTTC 59.841 45.455 0.00 0.00 0.00 2.62
4044 5586 5.907197 ATGTCTCGTGTGTTTTCTGTAAG 57.093 39.130 0.00 0.00 0.00 2.34
4047 5589 6.331845 TGTCTCGTGTGTTTTCTGTAAGTAA 58.668 36.000 0.00 0.00 33.76 2.24
4049 5591 6.254157 GTCTCGTGTGTTTTCTGTAAGTAACA 59.746 38.462 0.00 0.00 37.28 2.41
4088 5630 8.306313 TCTCTTGTAATTTCTAGTCATGCCTA 57.694 34.615 0.00 0.00 0.00 3.93
4090 5632 8.079211 TCTTGTAATTTCTAGTCATGCCTAGT 57.921 34.615 10.43 0.00 36.59 2.57
4100 5642 7.723324 TCTAGTCATGCCTAGTATTTTACACC 58.277 38.462 10.43 0.00 36.59 4.16
4102 5644 5.128171 AGTCATGCCTAGTATTTTACACCGA 59.872 40.000 0.00 0.00 0.00 4.69
4104 5646 5.989168 TCATGCCTAGTATTTTACACCGATG 59.011 40.000 0.00 0.00 0.00 3.84
4105 5647 5.347620 TGCCTAGTATTTTACACCGATGT 57.652 39.130 0.00 0.00 43.30 3.06
4106 5648 6.468333 TGCCTAGTATTTTACACCGATGTA 57.532 37.500 0.00 0.00 40.48 2.29
4107 5649 6.509656 TGCCTAGTATTTTACACCGATGTAG 58.490 40.000 0.00 0.00 42.29 2.74
4108 5650 5.924825 GCCTAGTATTTTACACCGATGTAGG 59.075 44.000 0.00 0.00 42.29 3.18
4109 5651 6.239120 GCCTAGTATTTTACACCGATGTAGGA 60.239 42.308 0.00 0.00 42.29 2.94
4118 5660 5.197682 ACACCGATGTAGGAGTATTTAGC 57.802 43.478 0.00 0.00 37.26 3.09
4139 5684 8.948631 TTAGCTTCTCTTATTAACTGATGGTG 57.051 34.615 0.00 0.00 0.00 4.17
4142 5687 6.019479 GCTTCTCTTATTAACTGATGGTGTCG 60.019 42.308 0.00 0.00 0.00 4.35
4144 5689 6.561614 TCTCTTATTAACTGATGGTGTCGTC 58.438 40.000 0.00 0.00 0.00 4.20
4145 5690 5.337554 TCTTATTAACTGATGGTGTCGTCG 58.662 41.667 0.00 0.00 0.00 5.12
4146 5691 3.587797 ATTAACTGATGGTGTCGTCGT 57.412 42.857 0.00 0.00 0.00 4.34
4147 5692 2.341318 TAACTGATGGTGTCGTCGTG 57.659 50.000 0.00 0.00 0.00 4.35
4148 5693 0.319555 AACTGATGGTGTCGTCGTGG 60.320 55.000 0.00 0.00 0.00 4.94
4149 5694 2.048597 TGATGGTGTCGTCGTGGC 60.049 61.111 0.00 0.00 0.00 5.01
4153 5698 2.279918 GGTGTCGTCGTGGCTTGT 60.280 61.111 0.00 0.00 0.00 3.16
4155 5700 1.275657 GTGTCGTCGTGGCTTGTTG 59.724 57.895 0.00 0.00 0.00 3.33
4156 5701 1.885388 TGTCGTCGTGGCTTGTTGG 60.885 57.895 0.00 0.00 0.00 3.77
4160 5705 1.557443 CGTCGTGGCTTGTTGGTCTC 61.557 60.000 0.00 0.00 0.00 3.36
4161 5706 0.531974 GTCGTGGCTTGTTGGTCTCA 60.532 55.000 0.00 0.00 0.00 3.27
4167 5712 0.312102 GCTTGTTGGTCTCAAGGTGC 59.688 55.000 7.58 0.00 41.50 5.01
4182 5727 2.706636 GTGCTGAAGAACACCTGCA 58.293 52.632 0.00 0.00 35.41 4.41
4183 5728 1.024271 GTGCTGAAGAACACCTGCAA 58.976 50.000 0.00 0.00 38.59 4.08
4191 5736 3.788227 AGAACACCTGCAACTGGATTA 57.212 42.857 0.00 0.00 0.00 1.75
4192 5737 3.679389 AGAACACCTGCAACTGGATTAG 58.321 45.455 0.00 0.00 0.00 1.73
4193 5738 3.073062 AGAACACCTGCAACTGGATTAGT 59.927 43.478 0.00 0.00 42.89 2.24
4194 5739 2.783135 ACACCTGCAACTGGATTAGTG 58.217 47.619 0.00 0.00 40.26 2.74
4195 5740 2.106511 ACACCTGCAACTGGATTAGTGT 59.893 45.455 0.00 0.00 40.26 3.55
4196 5741 3.326588 ACACCTGCAACTGGATTAGTGTA 59.673 43.478 0.00 0.00 40.26 2.90
4198 5743 4.943705 CACCTGCAACTGGATTAGTGTAAT 59.056 41.667 0.00 0.00 40.26 1.89
4199 5744 4.943705 ACCTGCAACTGGATTAGTGTAATG 59.056 41.667 0.00 0.00 40.26 1.90
4200 5745 4.201950 CCTGCAACTGGATTAGTGTAATGC 60.202 45.833 0.00 0.00 40.26 3.56
4201 5746 4.588899 TGCAACTGGATTAGTGTAATGCT 58.411 39.130 0.00 0.00 39.21 3.79
4202 5747 5.739959 TGCAACTGGATTAGTGTAATGCTA 58.260 37.500 0.00 0.00 39.21 3.49
4203 5748 5.584649 TGCAACTGGATTAGTGTAATGCTAC 59.415 40.000 0.00 0.00 39.21 3.58
4204 5749 5.584649 GCAACTGGATTAGTGTAATGCTACA 59.415 40.000 0.73 0.00 40.26 2.74
4216 5761 5.063204 TGTAATGCTACACTGATATTGGGC 58.937 41.667 0.00 0.00 32.93 5.36
4217 5762 4.443978 AATGCTACACTGATATTGGGCT 57.556 40.909 0.00 0.00 0.00 5.19
4218 5763 5.567037 AATGCTACACTGATATTGGGCTA 57.433 39.130 0.00 0.00 0.00 3.93
4219 5764 4.336889 TGCTACACTGATATTGGGCTAC 57.663 45.455 0.00 0.00 0.00 3.58
4220 5765 3.243737 TGCTACACTGATATTGGGCTACG 60.244 47.826 0.00 0.00 0.00 3.51
4221 5766 3.005472 GCTACACTGATATTGGGCTACGA 59.995 47.826 0.00 0.00 0.00 3.43
4222 5767 4.322049 GCTACACTGATATTGGGCTACGAT 60.322 45.833 0.00 0.00 0.00 3.73
4223 5768 4.258702 ACACTGATATTGGGCTACGATC 57.741 45.455 0.00 0.00 0.00 3.69
4224 5769 3.898123 ACACTGATATTGGGCTACGATCT 59.102 43.478 0.00 0.00 0.00 2.75
4225 5770 4.021894 ACACTGATATTGGGCTACGATCTC 60.022 45.833 0.00 0.00 0.00 2.75
4226 5771 3.511934 ACTGATATTGGGCTACGATCTCC 59.488 47.826 0.00 0.00 0.00 3.71
4227 5772 3.766591 CTGATATTGGGCTACGATCTCCT 59.233 47.826 0.00 0.00 0.00 3.69
4228 5773 3.764434 TGATATTGGGCTACGATCTCCTC 59.236 47.826 0.00 0.00 0.00 3.71
4229 5774 2.088104 ATTGGGCTACGATCTCCTCA 57.912 50.000 0.00 0.00 0.00 3.86
4237 5782 2.751166 ACGATCTCCTCAACTGGTTG 57.249 50.000 7.10 7.10 41.71 3.77
4243 5788 1.347707 CTCCTCAACTGGTTGCCACTA 59.652 52.381 8.43 0.00 40.24 2.74
4244 5789 1.347707 TCCTCAACTGGTTGCCACTAG 59.652 52.381 8.43 0.00 40.24 2.57
4245 5790 1.611673 CCTCAACTGGTTGCCACTAGG 60.612 57.143 6.26 6.26 40.24 3.02
4246 5791 0.400213 TCAACTGGTTGCCACTAGGG 59.600 55.000 6.26 0.00 40.24 3.53
4247 5792 0.609131 CAACTGGTTGCCACTAGGGG 60.609 60.000 6.68 6.68 35.80 4.79
4248 5793 1.065997 AACTGGTTGCCACTAGGGGT 61.066 55.000 13.95 0.00 35.80 4.95
4249 5794 1.299976 CTGGTTGCCACTAGGGGTC 59.700 63.158 13.95 5.66 37.04 4.46
4252 5797 1.198759 GGTTGCCACTAGGGGTCAGA 61.199 60.000 13.95 0.33 37.04 3.27
4254 5799 1.073284 GTTGCCACTAGGGGTCAGAAA 59.927 52.381 13.95 0.00 37.04 2.52
4257 5802 1.339151 GCCACTAGGGGTCAGAAACTG 60.339 57.143 13.95 0.00 37.04 3.16
4259 5804 1.347707 CACTAGGGGTCAGAAACTGCA 59.652 52.381 0.00 0.00 0.00 4.41
4262 5807 3.452627 ACTAGGGGTCAGAAACTGCATAG 59.547 47.826 0.00 0.00 0.00 2.23
4263 5808 1.065126 AGGGGTCAGAAACTGCATAGC 60.065 52.381 0.00 0.00 0.00 2.97
4264 5809 1.340017 GGGGTCAGAAACTGCATAGCA 60.340 52.381 0.00 0.00 36.92 3.49
4281 5826 1.167851 GCAGTAGCTGATTGGCAACA 58.832 50.000 0.00 2.07 41.53 3.33
4293 5838 2.510664 GGCAACAAACAGGGTCCAA 58.489 52.632 0.00 0.00 0.00 3.53
4303 5848 4.670896 AACAGGGTCCAATTTTGTCAAG 57.329 40.909 0.00 0.00 0.00 3.02
4315 5860 6.488683 CCAATTTTGTCAAGAGTTGGTAGGTA 59.511 38.462 13.45 0.00 33.25 3.08
4316 5861 7.308589 CCAATTTTGTCAAGAGTTGGTAGGTAG 60.309 40.741 13.45 0.00 33.25 3.18
4317 5862 6.488769 TTTTGTCAAGAGTTGGTAGGTAGA 57.511 37.500 0.00 0.00 0.00 2.59
4318 5863 6.681729 TTTGTCAAGAGTTGGTAGGTAGAT 57.318 37.500 0.00 0.00 0.00 1.98
4319 5864 7.786046 TTTGTCAAGAGTTGGTAGGTAGATA 57.214 36.000 0.00 0.00 0.00 1.98
4320 5865 7.786046 TTGTCAAGAGTTGGTAGGTAGATAA 57.214 36.000 0.00 0.00 0.00 1.75
4322 5867 8.008513 TGTCAAGAGTTGGTAGGTAGATAATC 57.991 38.462 0.00 0.00 0.00 1.75
4323 5868 7.839705 TGTCAAGAGTTGGTAGGTAGATAATCT 59.160 37.037 0.00 0.00 0.00 2.40
4325 5870 9.931698 TCAAGAGTTGGTAGGTAGATAATCTAA 57.068 33.333 0.00 0.00 29.58 2.10
4370 5915 1.334059 CGATCCACATTACAATGCCGC 60.334 52.381 1.84 0.00 40.04 6.53
4372 5917 1.832883 TCCACATTACAATGCCGCTT 58.167 45.000 1.84 0.00 40.04 4.68
4379 5924 2.884997 TACAATGCCGCTTCCCGCAT 62.885 55.000 0.00 0.00 39.08 4.73
4388 5933 2.210116 CGCTTCCCGCATAACTGTATT 58.790 47.619 0.00 0.00 39.08 1.89
4394 5939 3.118408 TCCCGCATAACTGTATTCTGCTT 60.118 43.478 0.00 0.00 0.00 3.91
4395 5940 3.627577 CCCGCATAACTGTATTCTGCTTT 59.372 43.478 0.00 0.00 0.00 3.51
4396 5941 4.260784 CCCGCATAACTGTATTCTGCTTTC 60.261 45.833 0.00 0.00 0.00 2.62
4397 5942 4.572389 CCGCATAACTGTATTCTGCTTTCT 59.428 41.667 0.00 0.00 0.00 2.52
4398 5943 5.496387 CGCATAACTGTATTCTGCTTTCTG 58.504 41.667 0.00 0.00 0.00 3.02
4399 5944 5.269313 GCATAACTGTATTCTGCTTTCTGC 58.731 41.667 0.00 0.00 43.25 4.26
4401 5946 6.484540 CATAACTGTATTCTGCTTTCTGCTG 58.515 40.000 0.00 0.00 43.37 4.41
4402 5947 3.341823 ACTGTATTCTGCTTTCTGCTGG 58.658 45.455 0.00 0.00 43.37 4.85
4405 5950 3.263170 TGTATTCTGCTTTCTGCTGGGTA 59.737 43.478 0.00 0.00 43.37 3.69
4406 5951 2.949177 TTCTGCTTTCTGCTGGGTAA 57.051 45.000 0.00 0.00 43.37 2.85
4408 5953 1.699634 TCTGCTTTCTGCTGGGTAACT 59.300 47.619 0.00 0.00 43.37 2.24
4409 5954 2.079925 CTGCTTTCTGCTGGGTAACTC 58.920 52.381 0.00 0.00 43.37 3.01
4410 5955 1.699634 TGCTTTCTGCTGGGTAACTCT 59.300 47.619 0.00 0.00 43.37 3.24
4412 5957 2.289694 GCTTTCTGCTGGGTAACTCTCA 60.290 50.000 0.00 0.00 38.95 3.27
4414 5959 2.604912 TCTGCTGGGTAACTCTCAGA 57.395 50.000 0.00 0.00 46.95 3.27
4415 5960 2.451490 TCTGCTGGGTAACTCTCAGAG 58.549 52.381 0.00 0.00 46.95 3.35
4416 5961 1.480137 CTGCTGGGTAACTCTCAGAGG 59.520 57.143 6.64 0.00 46.95 3.69
4417 5962 0.176910 GCTGGGTAACTCTCAGAGGC 59.823 60.000 6.64 0.00 46.95 4.70
4418 5963 1.561643 CTGGGTAACTCTCAGAGGCA 58.438 55.000 6.64 0.00 46.95 4.75
4419 5964 1.480137 CTGGGTAACTCTCAGAGGCAG 59.520 57.143 6.64 0.00 46.95 4.85
4420 5965 1.077169 TGGGTAACTCTCAGAGGCAGA 59.923 52.381 6.64 0.00 33.35 4.26
4421 5966 1.754226 GGGTAACTCTCAGAGGCAGAG 59.246 57.143 6.64 0.00 42.84 3.35
4422 5967 1.136110 GGTAACTCTCAGAGGCAGAGC 59.864 57.143 6.64 0.00 41.13 4.09
4441 5986 2.171448 AGCCCGCTCTAGTGATCAAAAT 59.829 45.455 0.00 0.00 0.00 1.82
4444 5989 4.496507 GCCCGCTCTAGTGATCAAAATTTC 60.497 45.833 0.00 0.00 0.00 2.17
4447 5992 4.260375 CGCTCTAGTGATCAAAATTTCCCG 60.260 45.833 0.00 0.00 0.00 5.14
4450 5995 1.824852 AGTGATCAAAATTTCCCGCCC 59.175 47.619 0.00 0.00 0.00 6.13
4460 6005 1.036707 TTTCCCGCCCAAAACTTGAG 58.963 50.000 0.00 0.00 0.00 3.02
4478 6023 2.682836 GAGTTGAGCTCAAGGTCTCAC 58.317 52.381 29.13 16.20 43.58 3.51
4479 6024 1.000283 AGTTGAGCTCAAGGTCTCACG 60.000 52.381 29.13 0.00 42.60 4.35
4480 6025 1.000163 GTTGAGCTCAAGGTCTCACGA 60.000 52.381 29.13 0.83 42.60 4.35
4481 6026 0.598562 TGAGCTCAAGGTCTCACGAC 59.401 55.000 15.67 0.00 42.60 4.34
4482 6027 0.885196 GAGCTCAAGGTCTCACGACT 59.115 55.000 9.40 0.00 40.10 4.18
4483 6028 0.600557 AGCTCAAGGTCTCACGACTG 59.399 55.000 0.00 0.00 40.10 3.51
4485 6030 0.962489 CTCAAGGTCTCACGACTGGT 59.038 55.000 0.00 0.00 40.10 4.00
4487 6032 1.760613 TCAAGGTCTCACGACTGGTTT 59.239 47.619 0.00 0.00 40.10 3.27
4510 6074 2.084546 GGTCCATTCTTGAAGGGAACG 58.915 52.381 16.79 0.00 0.00 3.95
4531 6095 4.155449 CGTTCCCGTGTAAATTGTTGATG 58.845 43.478 0.00 0.00 0.00 3.07
4562 6126 1.419387 AGAAAGACTGCTGCCTTCTGT 59.581 47.619 0.00 0.00 0.00 3.41
4563 6127 2.158696 AGAAAGACTGCTGCCTTCTGTT 60.159 45.455 0.00 0.00 0.00 3.16
4564 6128 1.602311 AAGACTGCTGCCTTCTGTTG 58.398 50.000 0.00 0.00 0.00 3.33
4565 6129 0.471617 AGACTGCTGCCTTCTGTTGT 59.528 50.000 0.00 0.00 0.00 3.32
4567 6131 2.072298 GACTGCTGCCTTCTGTTGTAG 58.928 52.381 0.00 0.00 0.00 2.74
4568 6132 1.417890 ACTGCTGCCTTCTGTTGTAGT 59.582 47.619 0.00 0.00 0.00 2.73
4569 6133 2.632996 ACTGCTGCCTTCTGTTGTAGTA 59.367 45.455 0.00 0.00 0.00 1.82
4570 6134 3.257393 CTGCTGCCTTCTGTTGTAGTAG 58.743 50.000 0.00 0.00 0.00 2.57
4571 6135 2.632996 TGCTGCCTTCTGTTGTAGTAGT 59.367 45.455 0.00 0.00 0.00 2.73
4572 6136 3.071023 TGCTGCCTTCTGTTGTAGTAGTT 59.929 43.478 0.00 0.00 0.00 2.24
4574 6138 4.632153 CTGCCTTCTGTTGTAGTAGTTGT 58.368 43.478 0.00 0.00 0.00 3.32
4575 6139 4.377021 TGCCTTCTGTTGTAGTAGTTGTG 58.623 43.478 0.00 0.00 0.00 3.33
4576 6140 3.746492 GCCTTCTGTTGTAGTAGTTGTGG 59.254 47.826 0.00 0.00 0.00 4.17
4577 6141 4.315803 CCTTCTGTTGTAGTAGTTGTGGG 58.684 47.826 0.00 0.00 0.00 4.61
4578 6142 4.202326 CCTTCTGTTGTAGTAGTTGTGGGT 60.202 45.833 0.00 0.00 0.00 4.51
4586 6184 5.145564 TGTAGTAGTTGTGGGTTCTTCTCT 58.854 41.667 0.00 0.00 0.00 3.10
4618 6216 9.134734 CTTGTACAGAGTGAGTATTTTCTCTTC 57.865 37.037 0.00 0.00 35.46 2.87
4619 6217 8.410673 TGTACAGAGTGAGTATTTTCTCTTCT 57.589 34.615 0.00 0.00 35.46 2.85
4620 6218 8.516234 TGTACAGAGTGAGTATTTTCTCTTCTC 58.484 37.037 0.00 0.00 35.46 2.87
4623 6221 8.303876 ACAGAGTGAGTATTTTCTCTTCTCTTC 58.696 37.037 13.86 0.00 40.40 2.87
4624 6222 7.759433 CAGAGTGAGTATTTTCTCTTCTCTTCC 59.241 40.741 13.86 0.00 40.40 3.46
4625 6223 7.453126 AGAGTGAGTATTTTCTCTTCTCTTCCA 59.547 37.037 12.12 0.00 39.98 3.53
4626 6224 7.967908 AGTGAGTATTTTCTCTTCTCTTCCAA 58.032 34.615 0.00 0.00 35.68 3.53
4627 6225 8.093927 AGTGAGTATTTTCTCTTCTCTTCCAAG 58.906 37.037 0.00 0.00 35.68 3.61
4628 6226 7.333174 GTGAGTATTTTCTCTTCTCTTCCAAGG 59.667 40.741 0.00 0.00 35.68 3.61
4629 6227 7.235606 TGAGTATTTTCTCTTCTCTTCCAAGGA 59.764 37.037 0.00 0.00 35.68 3.36
4630 6228 7.619965 AGTATTTTCTCTTCTCTTCCAAGGAG 58.380 38.462 0.00 0.00 0.00 3.69
4631 6229 4.899352 TTTCTCTTCTCTTCCAAGGAGG 57.101 45.455 0.00 0.00 39.47 4.30
4650 6248 3.518634 GGACTTGCCTTGAACAACAAA 57.481 42.857 0.00 0.00 38.08 2.83
4651 6249 3.855858 GGACTTGCCTTGAACAACAAAA 58.144 40.909 0.00 0.00 38.08 2.44
4652 6250 4.441792 GGACTTGCCTTGAACAACAAAAT 58.558 39.130 0.00 0.00 38.08 1.82
4653 6251 4.270808 GGACTTGCCTTGAACAACAAAATG 59.729 41.667 0.00 0.00 38.08 2.32
4654 6252 4.831107 ACTTGCCTTGAACAACAAAATGT 58.169 34.783 0.00 0.00 38.08 2.71
4655 6253 4.869861 ACTTGCCTTGAACAACAAAATGTC 59.130 37.500 0.00 0.00 38.08 3.06
4656 6254 4.734398 TGCCTTGAACAACAAAATGTCT 57.266 36.364 0.00 0.00 38.08 3.41
4657 6255 5.843673 TGCCTTGAACAACAAAATGTCTA 57.156 34.783 0.00 0.00 38.08 2.59
4658 6256 5.587289 TGCCTTGAACAACAAAATGTCTAC 58.413 37.500 0.00 0.00 38.08 2.59
4673 6271 3.952931 TGTCTACCGAGTAGAAGAAGCT 58.047 45.455 13.24 0.00 45.12 3.74
4787 6388 4.400251 ACAGGGAGGGGAGGTCCG 62.400 72.222 0.00 0.00 34.56 4.79
4791 6392 4.153330 GGAGGGGAGGTCCGGCTA 62.153 72.222 0.00 0.00 36.71 3.93
4792 6393 2.522193 GAGGGGAGGTCCGGCTAG 60.522 72.222 0.00 0.00 36.71 3.42
4817 6424 2.280524 TGTGTGCGTGTGGGTAGC 60.281 61.111 0.00 0.00 0.00 3.58
4818 6425 2.280524 GTGTGCGTGTGGGTAGCA 60.281 61.111 0.00 0.00 38.71 3.49
4944 6552 3.039588 GCGACGTCAAGCCCGAAA 61.040 61.111 17.16 0.00 0.00 3.46
4945 6553 2.851104 CGACGTCAAGCCCGAAAC 59.149 61.111 17.16 0.00 0.00 2.78
4946 6554 1.952133 CGACGTCAAGCCCGAAACA 60.952 57.895 17.16 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.551585 CAGGTGATTACTGATAGTGATATCCC 58.448 42.308 0.00 0.00 38.20 3.85
29 30 7.606349 TGCAGGTGATTACTGATAGTGATATC 58.394 38.462 0.00 0.00 38.20 1.63
90 91 3.486708 CGCGCTTCATGTTAATTGGCTTA 60.487 43.478 5.56 0.00 0.00 3.09
92 93 1.202177 CGCGCTTCATGTTAATTGGCT 60.202 47.619 5.56 0.00 0.00 4.75
93 94 1.191096 CGCGCTTCATGTTAATTGGC 58.809 50.000 5.56 0.00 0.00 4.52
117 118 0.543749 AGGAAATGCTAGCGCTTCCT 59.456 50.000 30.68 30.68 42.66 3.36
135 136 4.471904 TCAGGCAGGTATTGTCACTAAG 57.528 45.455 0.00 0.00 32.36 2.18
201 202 6.303839 TGCTCCTGTACTGTTTCCTAATTTT 58.696 36.000 0.00 0.00 0.00 1.82
212 213 8.079211 TCTAATTCTAAATGCTCCTGTACTGT 57.921 34.615 0.00 0.00 0.00 3.55
213 214 8.948631 TTCTAATTCTAAATGCTCCTGTACTG 57.051 34.615 0.00 0.00 0.00 2.74
218 219 9.443283 CGATTTTTCTAATTCTAAATGCTCCTG 57.557 33.333 0.00 0.00 0.00 3.86
226 227 8.234546 GCACAGACCGATTTTTCTAATTCTAAA 58.765 33.333 0.00 0.00 0.00 1.85
231 232 5.957842 TGCACAGACCGATTTTTCTAATT 57.042 34.783 0.00 0.00 0.00 1.40
232 233 6.150976 TCAATGCACAGACCGATTTTTCTAAT 59.849 34.615 0.00 0.00 0.00 1.73
233 234 5.471797 TCAATGCACAGACCGATTTTTCTAA 59.528 36.000 0.00 0.00 0.00 2.10
234 235 5.000591 TCAATGCACAGACCGATTTTTCTA 58.999 37.500 0.00 0.00 0.00 2.10
235 236 3.820467 TCAATGCACAGACCGATTTTTCT 59.180 39.130 0.00 0.00 0.00 2.52
236 237 3.914364 GTCAATGCACAGACCGATTTTTC 59.086 43.478 8.75 0.00 0.00 2.29
237 238 3.569701 AGTCAATGCACAGACCGATTTTT 59.430 39.130 14.75 0.00 35.38 1.94
247 248 6.671190 TGATTTCTGTAAAGTCAATGCACAG 58.329 36.000 0.00 0.00 38.34 3.66
261 262 5.592282 TCCTTTTTGCACACTGATTTCTGTA 59.408 36.000 0.00 0.00 0.00 2.74
276 277 2.543430 TCTTTTTGCGCATCCTTTTTGC 59.457 40.909 12.75 0.00 36.74 3.68
337 340 5.702865 AGTATAAAACAATGTGCAGTGCAG 58.297 37.500 20.42 9.47 40.08 4.41
338 341 5.703978 AGTATAAAACAATGTGCAGTGCA 57.296 34.783 15.37 15.37 35.60 4.57
339 342 5.732647 CGTAGTATAAAACAATGTGCAGTGC 59.267 40.000 8.58 8.58 0.00 4.40
340 343 6.827641 ACGTAGTATAAAACAATGTGCAGTG 58.172 36.000 0.00 0.00 41.94 3.66
359 362 2.286067 GGTGCTACACGCTAGTACGTAG 60.286 54.545 0.00 9.10 46.34 3.51
360 363 1.665679 GGTGCTACACGCTAGTACGTA 59.334 52.381 0.00 0.00 46.34 3.57
363 366 0.248377 CCGGTGCTACACGCTAGTAC 60.248 60.000 0.00 1.62 40.11 2.73
364 367 0.392863 TCCGGTGCTACACGCTAGTA 60.393 55.000 0.00 0.00 40.11 1.82
365 368 1.035932 ATCCGGTGCTACACGCTAGT 61.036 55.000 0.00 0.00 40.11 2.57
366 369 0.595053 CATCCGGTGCTACACGCTAG 60.595 60.000 0.00 0.00 40.11 3.42
371 374 4.957759 AAATTTACATCCGGTGCTACAC 57.042 40.909 0.00 0.00 0.00 2.90
382 385 6.815142 AGCTCAATTCCAGCAAAATTTACATC 59.185 34.615 8.33 0.00 39.56 3.06
424 428 3.731089 TCACGTTTGGGTAAGTTCGATT 58.269 40.909 0.00 0.00 0.00 3.34
428 432 4.124970 AGTTCTCACGTTTGGGTAAGTTC 58.875 43.478 0.00 0.00 0.00 3.01
453 457 0.976590 ACTACCCCTTCTTCCTCGCC 60.977 60.000 0.00 0.00 0.00 5.54
471 475 1.084370 CCCTCGTGCCGATGAAGAAC 61.084 60.000 0.00 0.00 34.61 3.01
567 571 4.864334 GGCGATGCTGGGAGTGGG 62.864 72.222 0.00 0.00 0.00 4.61
822 853 1.401018 GCGAAATCTTCAAACCCCACG 60.401 52.381 0.00 0.00 0.00 4.94
848 879 1.890041 CGCCGTCCACAGAAACCAA 60.890 57.895 0.00 0.00 0.00 3.67
850 881 2.029964 TCGCCGTCCACAGAAACC 59.970 61.111 0.00 0.00 0.00 3.27
855 908 2.734723 CAGTGTCGCCGTCCACAG 60.735 66.667 11.07 1.29 33.99 3.66
894 955 1.002011 GGGTCCCACTTTCCAGAGC 60.002 63.158 1.78 0.00 0.00 4.09
915 976 4.412207 GTTTAATTCCAGCAACTTAGCCG 58.588 43.478 0.00 0.00 34.23 5.52
923 984 3.335484 AGGTAGGGGTTTAATTCCAGCAA 59.665 43.478 0.00 0.00 0.00 3.91
1239 1306 1.971695 GTTGAGTTCCCGGGGCTTG 60.972 63.158 23.50 0.00 0.00 4.01
1296 1363 4.724074 ATCTAAACCAATGTGCCACATG 57.276 40.909 11.79 2.15 37.97 3.21
1302 1369 9.908152 AGTAAAAACTAATCTAAACCAATGTGC 57.092 29.630 0.00 0.00 0.00 4.57
1319 1386 8.135529 GGAAACAGCAGTAAATGAGTAAAAACT 58.864 33.333 0.00 0.00 0.00 2.66
1322 1389 7.817418 AGGAAACAGCAGTAAATGAGTAAAA 57.183 32.000 0.00 0.00 0.00 1.52
1326 1393 5.625150 AGAAGGAAACAGCAGTAAATGAGT 58.375 37.500 0.00 0.00 0.00 3.41
1338 1405 8.033626 ACTAATACCGTTAGAAGAAGGAAACAG 58.966 37.037 2.12 0.00 0.00 3.16
1344 1443 9.733219 CTCTTAACTAATACCGTTAGAAGAAGG 57.267 37.037 2.12 0.00 0.00 3.46
1355 1454 7.168302 CACTGATTCAGCTCTTAACTAATACCG 59.832 40.741 13.64 0.00 34.37 4.02
1356 1455 7.982354 ACACTGATTCAGCTCTTAACTAATACC 59.018 37.037 13.64 0.00 34.37 2.73
1364 1471 6.769512 ACCTTTACACTGATTCAGCTCTTAA 58.230 36.000 13.64 3.72 34.37 1.85
1379 1486 2.548480 GAGCAGACCACAACCTTTACAC 59.452 50.000 0.00 0.00 0.00 2.90
1382 1489 3.788227 ATGAGCAGACCACAACCTTTA 57.212 42.857 0.00 0.00 0.00 1.85
1393 1501 3.449018 TCACTAAGGAGGAATGAGCAGAC 59.551 47.826 0.00 0.00 0.00 3.51
1400 1508 5.738909 AGTTCATGTCACTAAGGAGGAATG 58.261 41.667 0.00 0.00 0.00 2.67
1408 1516 8.567948 ACCAAATGTAAAGTTCATGTCACTAAG 58.432 33.333 0.00 0.00 0.00 2.18
1434 1542 1.067693 CTGTCGTTGCTGCGTATGAA 58.932 50.000 0.00 0.00 0.00 2.57
1474 1584 4.979943 TTTCTTGTTTGCTGATGACACA 57.020 36.364 0.00 0.00 0.00 3.72
1475 1585 6.292488 CCAAATTTCTTGTTTGCTGATGACAC 60.292 38.462 0.00 0.00 35.71 3.67
1547 1658 1.004745 AGGGCATAACAAGACACCAGG 59.995 52.381 0.00 0.00 0.00 4.45
1562 1673 0.179234 TGACTGTTTCACGAAGGGCA 59.821 50.000 0.00 0.00 0.00 5.36
1564 1675 3.679980 CACTATGACTGTTTCACGAAGGG 59.320 47.826 0.00 0.00 36.92 3.95
1566 1677 4.376413 GCACACTATGACTGTTTCACGAAG 60.376 45.833 0.00 0.00 36.92 3.79
1611 1723 5.900123 ACCTGTAGAACACTATTCAGCCTAT 59.100 40.000 0.00 0.00 0.00 2.57
1612 1724 5.269991 ACCTGTAGAACACTATTCAGCCTA 58.730 41.667 0.00 0.00 0.00 3.93
1613 1725 4.097418 ACCTGTAGAACACTATTCAGCCT 58.903 43.478 0.00 0.00 0.00 4.58
1722 1834 2.032620 TCCAGTAGATCTTTCGCCTCC 58.967 52.381 0.00 0.00 0.00 4.30
1763 1875 2.191641 GCCTGCACTCATCTCCCC 59.808 66.667 0.00 0.00 0.00 4.81
1773 1885 1.866601 GTTTCAACATTTGGCCTGCAC 59.133 47.619 3.32 0.00 0.00 4.57
1872 1984 2.887790 CTCGTCCTGACCATGAGGA 58.112 57.895 0.00 0.00 37.27 3.71
1877 1989 2.362369 CCTGCCTCGTCCTGACCAT 61.362 63.158 0.00 0.00 0.00 3.55
1932 2044 9.507329 TTCTATAAATATGATCACCAAGAAGGC 57.493 33.333 0.00 0.00 43.14 4.35
1980 2092 6.208797 GGTAGAGAAGGGTTTTATGCACTTTT 59.791 38.462 0.00 0.00 28.44 2.27
1981 2093 5.710567 GGTAGAGAAGGGTTTTATGCACTTT 59.289 40.000 0.00 0.00 28.44 2.66
1993 2105 4.264895 ACCTAGAACATGGTAGAGAAGGGT 60.265 45.833 0.00 0.00 34.36 4.34
1994 2106 4.290942 ACCTAGAACATGGTAGAGAAGGG 58.709 47.826 0.00 0.00 34.36 3.95
2011 2123 1.933021 TGGACACCACAGGTACCTAG 58.067 55.000 15.80 11.72 32.11 3.02
2024 2136 3.339141 GGACTGGATCTCTTTTGGACAC 58.661 50.000 0.00 0.00 0.00 3.67
2079 2191 4.019051 TGAAATTCTCCTTCTGCCTCATCA 60.019 41.667 0.00 0.00 0.00 3.07
2128 2240 4.393062 ACTCACCATCATAAAGCAACTTCG 59.607 41.667 0.00 0.00 0.00 3.79
2139 2251 9.551734 CTAAAGAATGATCAACTCACCATCATA 57.448 33.333 0.00 0.00 36.45 2.15
2153 2265 3.944015 ACAGCCTGCACTAAAGAATGATC 59.056 43.478 0.00 0.00 0.00 2.92
2296 2413 7.810766 AACAATTTTTATGCTACATTCCACG 57.189 32.000 0.00 0.00 0.00 4.94
2327 2444 2.797156 GCACAGCAAGATCTATACCACG 59.203 50.000 0.00 0.00 0.00 4.94
2351 2468 5.036117 ACATCTGCCAATAGAACCGTAAT 57.964 39.130 0.00 0.00 0.00 1.89
2355 2472 4.060038 AGTACATCTGCCAATAGAACCG 57.940 45.455 0.00 0.00 0.00 4.44
2360 2477 6.223852 ACGGATTAAGTACATCTGCCAATAG 58.776 40.000 0.00 0.00 31.02 1.73
2381 2498 6.194796 AGACATCATCCACAAAATAAACGG 57.805 37.500 0.00 0.00 0.00 4.44
2506 2623 8.818057 CAATAAGACCCGACAATCTAAAGTTAG 58.182 37.037 0.00 0.00 0.00 2.34
2507 2624 8.533657 TCAATAAGACCCGACAATCTAAAGTTA 58.466 33.333 0.00 0.00 0.00 2.24
2522 2666 3.567478 AGTCAGCCATCAATAAGACCC 57.433 47.619 0.00 0.00 0.00 4.46
2525 2669 5.178096 TGGAAAGTCAGCCATCAATAAGA 57.822 39.130 0.00 0.00 0.00 2.10
2599 2743 6.378710 AAAGAGAGGCAGAAAGTTAACAAC 57.621 37.500 8.61 0.00 0.00 3.32
2627 2771 8.779354 AAGCAATCCAGAGTTTAACTAGTTAG 57.221 34.615 14.73 3.32 0.00 2.34
2652 2880 4.507388 GCTGTGCTAACATTCAAAAAGCAA 59.493 37.500 0.00 0.00 44.16 3.91
2656 2884 6.862608 CACATAGCTGTGCTAACATTCAAAAA 59.137 34.615 10.79 0.00 45.79 1.94
2657 2885 6.380995 CACATAGCTGTGCTAACATTCAAAA 58.619 36.000 10.79 0.00 45.79 2.44
2658 2886 5.941733 CACATAGCTGTGCTAACATTCAAA 58.058 37.500 10.79 0.00 45.79 2.69
2686 2914 9.699410 TGAAAAGAACCATGAATTATAGGTCAT 57.301 29.630 0.00 0.00 34.78 3.06
2698 3029 8.548025 TCAGGAATAGTATGAAAAGAACCATGA 58.452 33.333 0.00 0.00 0.00 3.07
2779 3110 7.618117 TCATAGGACACCACAAAAGATACTCTA 59.382 37.037 0.00 0.00 0.00 2.43
2780 3111 6.440647 TCATAGGACACCACAAAAGATACTCT 59.559 38.462 0.00 0.00 0.00 3.24
2781 3112 6.640518 TCATAGGACACCACAAAAGATACTC 58.359 40.000 0.00 0.00 0.00 2.59
2782 3113 6.620877 TCATAGGACACCACAAAAGATACT 57.379 37.500 0.00 0.00 0.00 2.12
2787 3118 7.362056 CCAGTAAATCATAGGACACCACAAAAG 60.362 40.741 0.00 0.00 0.00 2.27
2804 3135 9.378551 TCAGTGTATCATAAACACCAGTAAATC 57.621 33.333 2.90 0.00 46.77 2.17
2811 3142 5.491323 TGGTCAGTGTATCATAAACACCA 57.509 39.130 2.90 0.00 46.77 4.17
2863 3194 4.782156 TCCCCAAATCAGGTTTTATTGCAT 59.218 37.500 0.00 0.00 0.00 3.96
2866 3197 6.930722 GCATATCCCCAAATCAGGTTTTATTG 59.069 38.462 0.00 0.00 0.00 1.90
2876 3207 3.705579 CCAACAAGCATATCCCCAAATCA 59.294 43.478 0.00 0.00 0.00 2.57
2913 3280 5.535406 TCCGTTTTAGCCCAAGAACATTTAA 59.465 36.000 0.00 0.00 0.00 1.52
2927 3294 2.879026 GGGAAGATGGATCCGTTTTAGC 59.121 50.000 8.18 0.00 37.87 3.09
2982 3357 3.378112 TGCCTAGCTGACAATGCATAAAC 59.622 43.478 0.00 0.00 0.00 2.01
3136 3511 1.135972 CGCAGTTTCTCCCGATTTGTG 60.136 52.381 0.00 0.00 0.00 3.33
3160 3535 4.550422 GAAGCAATTCCTCCTCAACAAAC 58.450 43.478 0.00 0.00 0.00 2.93
3208 3583 5.509670 GCAAACCTTCAGCCAATAAAACTCT 60.510 40.000 0.00 0.00 0.00 3.24
3241 3616 4.442375 AAGATAGAAGGTGACACGTGAG 57.558 45.455 25.01 0.00 0.00 3.51
3242 3617 4.279922 TGAAAGATAGAAGGTGACACGTGA 59.720 41.667 25.01 0.00 0.00 4.35
3245 3620 7.827819 TTATTGAAAGATAGAAGGTGACACG 57.172 36.000 0.00 0.00 0.00 4.49
3271 3648 9.775854 AAAATCACCAAATGTGTCAATGAAATA 57.224 25.926 0.00 0.00 45.61 1.40
3288 3665 2.490115 GGCAACCATCGTAAAATCACCA 59.510 45.455 0.00 0.00 0.00 4.17
3290 3667 2.780993 CGGCAACCATCGTAAAATCAC 58.219 47.619 0.00 0.00 0.00 3.06
3291 3668 1.131504 GCGGCAACCATCGTAAAATCA 59.868 47.619 0.00 0.00 0.00 2.57
3292 3669 1.400494 AGCGGCAACCATCGTAAAATC 59.600 47.619 1.45 0.00 0.00 2.17
3300 3677 1.539827 ACAAAACTAGCGGCAACCATC 59.460 47.619 1.45 0.00 0.00 3.51
3306 3683 0.958091 ATTGCACAAAACTAGCGGCA 59.042 45.000 1.45 0.00 0.00 5.69
3307 3684 1.335872 ACATTGCACAAAACTAGCGGC 60.336 47.619 0.00 0.00 0.00 6.53
3309 3686 2.287547 ACCACATTGCACAAAACTAGCG 60.288 45.455 0.00 0.00 0.00 4.26
3310 3687 3.308530 GACCACATTGCACAAAACTAGC 58.691 45.455 0.00 0.00 0.00 3.42
3311 3688 3.569701 AGGACCACATTGCACAAAACTAG 59.430 43.478 0.00 0.00 0.00 2.57
3339 3716 5.380043 ACTTCACCTGTCATTTGTTGAGAT 58.620 37.500 0.00 0.00 34.17 2.75
3436 3813 7.509546 TCTAGAGGAAAGAACTCACAACATTT 58.490 34.615 0.00 0.00 37.43 2.32
3485 3867 4.280436 ACACGGTCCAGATCAAACATTA 57.720 40.909 0.00 0.00 0.00 1.90
3488 3870 3.369052 GGATACACGGTCCAGATCAAACA 60.369 47.826 0.00 0.00 35.76 2.83
3508 3890 8.307483 GGAGAACAGAATATATCGATTTCAGGA 58.693 37.037 1.71 0.00 0.00 3.86
3517 3899 5.398603 AGCCAGGAGAACAGAATATATCG 57.601 43.478 0.00 0.00 0.00 2.92
3542 3924 6.550938 TCAGATTCTCTATTCTGCAGGAAA 57.449 37.500 15.13 1.43 39.36 3.13
3561 3944 8.884124 ACCTTAAATTTCAATCCTGATTCAGA 57.116 30.769 15.36 2.08 32.44 3.27
3566 3949 9.308000 TGTACAACCTTAAATTTCAATCCTGAT 57.692 29.630 0.00 0.00 0.00 2.90
3574 3957 6.716934 TGCCTTGTACAACCTTAAATTTCA 57.283 33.333 3.59 0.00 0.00 2.69
3578 3961 3.509967 GGCTGCCTTGTACAACCTTAAAT 59.490 43.478 12.43 0.00 0.00 1.40
3588 3971 5.588648 TCATAATTACTTGGCTGCCTTGTAC 59.411 40.000 21.03 0.00 0.00 2.90
3666 4049 1.541147 CATGACAGGCGGTGACAAATT 59.459 47.619 0.00 0.00 34.40 1.82
3676 4059 0.817654 TAGACAGGACATGACAGGCG 59.182 55.000 0.00 0.00 0.00 5.52
3677 4060 3.550437 AATAGACAGGACATGACAGGC 57.450 47.619 0.00 0.00 0.00 4.85
3711 4094 5.574055 CAGAACATATGCTTCGTTGCAAATT 59.426 36.000 0.00 2.66 46.61 1.82
3720 4103 5.696260 TTTACGACAGAACATATGCTTCG 57.304 39.130 1.58 6.56 0.00 3.79
3732 5267 4.002982 AGCTGAATTGCATTTACGACAGA 58.997 39.130 10.34 0.00 34.99 3.41
3749 5284 5.351465 CCGCAACTATAAGAAAAAGAGCTGA 59.649 40.000 0.00 0.00 0.00 4.26
3761 5296 7.246674 ACATAAATCACACCGCAACTATAAG 57.753 36.000 0.00 0.00 0.00 1.73
3762 5297 6.259167 GGACATAAATCACACCGCAACTATAA 59.741 38.462 0.00 0.00 0.00 0.98
3763 5298 5.756347 GGACATAAATCACACCGCAACTATA 59.244 40.000 0.00 0.00 0.00 1.31
3772 5307 7.416326 GGTTAAGGATTGGACATAAATCACACC 60.416 40.741 0.00 0.00 36.03 4.16
3775 5310 7.682021 GCAGGTTAAGGATTGGACATAAATCAC 60.682 40.741 0.00 0.00 36.03 3.06
3785 5320 4.735369 TCTTTTGCAGGTTAAGGATTGGA 58.265 39.130 0.00 0.00 0.00 3.53
3948 5483 6.203145 GCATATATCATGCTCTTGCCTATCAG 59.797 42.308 2.04 0.00 41.52 2.90
3955 5496 4.454847 ACTGTGCATATATCATGCTCTTGC 59.545 41.667 10.30 0.00 44.79 4.01
3969 5510 7.900864 CGATACGAAATTGTTTAACTGTGCATA 59.099 33.333 0.00 0.00 0.00 3.14
3970 5511 6.740905 CGATACGAAATTGTTTAACTGTGCAT 59.259 34.615 0.00 0.00 0.00 3.96
4008 5550 2.789893 CGAGACATAACGCTAGAAAGGC 59.210 50.000 0.00 0.00 0.00 4.35
4009 5551 3.791887 CACGAGACATAACGCTAGAAAGG 59.208 47.826 0.00 0.00 0.00 3.11
4010 5552 4.263209 CACACGAGACATAACGCTAGAAAG 59.737 45.833 0.00 0.00 0.00 2.62
4011 5553 4.163552 CACACGAGACATAACGCTAGAAA 58.836 43.478 0.00 0.00 0.00 2.52
4014 5556 3.132629 ACACACGAGACATAACGCTAG 57.867 47.619 0.00 0.00 0.00 3.42
4060 5602 7.334421 GGCATGACTAGAAATTACAAGAGAACA 59.666 37.037 0.00 0.00 0.00 3.18
4075 5617 7.469594 CGGTGTAAAATACTAGGCATGACTAGA 60.470 40.741 37.04 22.46 42.40 2.43
4088 5630 6.786967 ACTCCTACATCGGTGTAAAATACT 57.213 37.500 10.27 0.00 40.16 2.12
4100 5642 7.209471 AGAGAAGCTAAATACTCCTACATCG 57.791 40.000 0.00 0.00 0.00 3.84
4118 5660 7.036220 ACGACACCATCAGTTAATAAGAGAAG 58.964 38.462 0.00 0.00 0.00 2.85
4135 5680 2.279851 CAAGCCACGACGACACCA 60.280 61.111 0.00 0.00 0.00 4.17
4136 5681 1.885850 AACAAGCCACGACGACACC 60.886 57.895 0.00 0.00 0.00 4.16
4139 5684 1.828331 GACCAACAAGCCACGACGAC 61.828 60.000 0.00 0.00 0.00 4.34
4142 5687 0.531974 TGAGACCAACAAGCCACGAC 60.532 55.000 0.00 0.00 0.00 4.34
4144 5689 0.588252 CTTGAGACCAACAAGCCACG 59.412 55.000 0.00 0.00 38.28 4.94
4145 5690 0.954452 CCTTGAGACCAACAAGCCAC 59.046 55.000 0.00 0.00 42.03 5.01
4146 5691 0.550914 ACCTTGAGACCAACAAGCCA 59.449 50.000 0.00 0.00 42.03 4.75
4147 5692 0.954452 CACCTTGAGACCAACAAGCC 59.046 55.000 0.00 0.00 42.03 4.35
4148 5693 0.312102 GCACCTTGAGACCAACAAGC 59.688 55.000 0.00 0.00 42.03 4.01
4149 5694 1.605710 CAGCACCTTGAGACCAACAAG 59.394 52.381 0.00 0.00 42.72 3.16
4153 5698 1.768275 TCTTCAGCACCTTGAGACCAA 59.232 47.619 0.00 0.00 0.00 3.67
4155 5700 2.147150 GTTCTTCAGCACCTTGAGACC 58.853 52.381 0.00 0.00 0.00 3.85
4156 5701 2.545946 GTGTTCTTCAGCACCTTGAGAC 59.454 50.000 0.00 0.00 0.00 3.36
4167 5712 1.605710 CCAGTTGCAGGTGTTCTTCAG 59.394 52.381 0.00 0.00 0.00 3.02
4193 5738 5.063204 GCCCAATATCAGTGTAGCATTACA 58.937 41.667 0.00 0.00 37.45 2.41
4194 5739 5.308825 AGCCCAATATCAGTGTAGCATTAC 58.691 41.667 0.00 0.00 0.00 1.89
4195 5740 5.567037 AGCCCAATATCAGTGTAGCATTA 57.433 39.130 0.00 0.00 0.00 1.90
4196 5741 4.443978 AGCCCAATATCAGTGTAGCATT 57.556 40.909 0.00 0.00 0.00 3.56
4198 5743 3.243737 CGTAGCCCAATATCAGTGTAGCA 60.244 47.826 0.00 0.00 0.00 3.49
4199 5744 3.005472 TCGTAGCCCAATATCAGTGTAGC 59.995 47.826 0.00 0.00 0.00 3.58
4200 5745 4.848562 TCGTAGCCCAATATCAGTGTAG 57.151 45.455 0.00 0.00 0.00 2.74
4201 5746 5.077564 AGATCGTAGCCCAATATCAGTGTA 58.922 41.667 0.00 0.00 0.00 2.90
4202 5747 3.898123 AGATCGTAGCCCAATATCAGTGT 59.102 43.478 0.00 0.00 0.00 3.55
4203 5748 4.489810 GAGATCGTAGCCCAATATCAGTG 58.510 47.826 0.00 0.00 0.00 3.66
4204 5749 3.511934 GGAGATCGTAGCCCAATATCAGT 59.488 47.826 0.00 0.00 0.00 3.41
4205 5750 3.766591 AGGAGATCGTAGCCCAATATCAG 59.233 47.826 0.00 0.00 0.00 2.90
4206 5751 3.764434 GAGGAGATCGTAGCCCAATATCA 59.236 47.826 0.00 0.00 0.00 2.15
4207 5752 3.764434 TGAGGAGATCGTAGCCCAATATC 59.236 47.826 0.00 0.00 0.00 1.63
4208 5753 3.779444 TGAGGAGATCGTAGCCCAATAT 58.221 45.455 0.00 0.00 0.00 1.28
4209 5754 3.238788 TGAGGAGATCGTAGCCCAATA 57.761 47.619 0.00 0.00 0.00 1.90
4213 5758 1.067821 CAGTTGAGGAGATCGTAGCCC 59.932 57.143 0.00 0.00 0.00 5.19
4214 5759 1.067821 CCAGTTGAGGAGATCGTAGCC 59.932 57.143 0.00 0.00 0.00 3.93
4216 5761 3.775202 CAACCAGTTGAGGAGATCGTAG 58.225 50.000 4.47 0.00 42.93 3.51
4217 5762 2.094182 GCAACCAGTTGAGGAGATCGTA 60.094 50.000 14.56 0.00 42.93 3.43
4218 5763 1.338200 GCAACCAGTTGAGGAGATCGT 60.338 52.381 14.56 0.00 42.93 3.73
4219 5764 1.363744 GCAACCAGTTGAGGAGATCG 58.636 55.000 14.56 0.00 42.93 3.69
4220 5765 1.003580 TGGCAACCAGTTGAGGAGATC 59.996 52.381 14.56 0.00 42.93 2.75
4221 5766 1.067295 TGGCAACCAGTTGAGGAGAT 58.933 50.000 14.56 0.00 42.93 2.75
4222 5767 0.108585 GTGGCAACCAGTTGAGGAGA 59.891 55.000 14.56 0.00 42.93 3.71
4223 5768 0.109342 AGTGGCAACCAGTTGAGGAG 59.891 55.000 14.56 0.00 42.93 3.69
4224 5769 1.347707 CTAGTGGCAACCAGTTGAGGA 59.652 52.381 14.56 0.00 42.93 3.71
4225 5770 1.611673 CCTAGTGGCAACCAGTTGAGG 60.612 57.143 14.56 7.62 42.93 3.86
4226 5771 1.611673 CCCTAGTGGCAACCAGTTGAG 60.612 57.143 14.56 2.40 42.93 3.02
4227 5772 0.400213 CCCTAGTGGCAACCAGTTGA 59.600 55.000 14.56 0.00 42.93 3.18
4228 5773 0.609131 CCCCTAGTGGCAACCAGTTG 60.609 60.000 6.15 6.15 43.14 3.16
4229 5774 1.065997 ACCCCTAGTGGCAACCAGTT 61.066 55.000 0.00 0.00 38.30 3.16
4237 5782 0.984995 AGTTTCTGACCCCTAGTGGC 59.015 55.000 0.00 0.00 0.00 5.01
4243 5788 1.065126 GCTATGCAGTTTCTGACCCCT 60.065 52.381 0.00 0.00 32.44 4.79
4244 5789 1.340017 TGCTATGCAGTTTCTGACCCC 60.340 52.381 0.00 0.00 33.32 4.95
4245 5790 2.113860 TGCTATGCAGTTTCTGACCC 57.886 50.000 0.00 0.00 33.32 4.46
4262 5807 1.167851 TGTTGCCAATCAGCTACTGC 58.832 50.000 0.00 0.00 38.96 4.40
4263 5808 3.004629 TGTTTGTTGCCAATCAGCTACTG 59.995 43.478 0.00 0.00 38.96 2.74
4264 5809 3.221771 TGTTTGTTGCCAATCAGCTACT 58.778 40.909 0.00 0.00 38.96 2.57
4266 5811 2.557924 CCTGTTTGTTGCCAATCAGCTA 59.442 45.455 7.77 0.00 42.88 3.32
4268 5813 1.606224 CCCTGTTTGTTGCCAATCAGC 60.606 52.381 7.77 0.00 42.88 4.26
4270 5815 1.686052 GACCCTGTTTGTTGCCAATCA 59.314 47.619 0.00 0.00 0.00 2.57
4281 5826 4.714308 TCTTGACAAAATTGGACCCTGTTT 59.286 37.500 0.00 0.00 0.00 2.83
4285 5830 4.184649 ACTCTTGACAAAATTGGACCCT 57.815 40.909 0.00 0.00 0.00 4.34
4286 5831 4.501400 CCAACTCTTGACAAAATTGGACCC 60.501 45.833 15.14 0.00 39.15 4.46
4290 5835 5.301805 ACCTACCAACTCTTGACAAAATTGG 59.698 40.000 17.29 17.29 41.92 3.16
4293 5838 7.074653 TCTACCTACCAACTCTTGACAAAAT 57.925 36.000 0.00 0.00 0.00 1.82
4325 5870 4.141892 CCTTCAGTCAAGCTCAGATGAGAT 60.142 45.833 13.98 4.21 44.74 2.75
4327 5872 3.195182 TCCTTCAGTCAAGCTCAGATGAG 59.805 47.826 5.45 5.45 44.75 2.90
4328 5873 3.056250 GTCCTTCAGTCAAGCTCAGATGA 60.056 47.826 0.00 0.00 0.00 2.92
4329 5874 3.260740 GTCCTTCAGTCAAGCTCAGATG 58.739 50.000 0.00 0.00 0.00 2.90
4330 5875 2.094286 CGTCCTTCAGTCAAGCTCAGAT 60.094 50.000 0.00 0.00 0.00 2.90
4334 5879 2.535331 GATCGTCCTTCAGTCAAGCTC 58.465 52.381 0.00 0.00 0.00 4.09
4370 5915 3.248602 GCAGAATACAGTTATGCGGGAAG 59.751 47.826 0.00 0.00 0.00 3.46
4372 5917 2.434336 AGCAGAATACAGTTATGCGGGA 59.566 45.455 2.28 0.00 41.69 5.14
4394 5939 2.828520 CTCTGAGAGTTACCCAGCAGAA 59.171 50.000 0.16 0.00 32.65 3.02
4395 5940 2.451490 CTCTGAGAGTTACCCAGCAGA 58.549 52.381 0.16 0.00 0.00 4.26
4396 5941 1.480137 CCTCTGAGAGTTACCCAGCAG 59.520 57.143 8.88 0.00 0.00 4.24
4397 5942 1.561643 CCTCTGAGAGTTACCCAGCA 58.438 55.000 8.88 0.00 0.00 4.41
4398 5943 0.176910 GCCTCTGAGAGTTACCCAGC 59.823 60.000 8.88 0.00 0.00 4.85
4399 5944 1.480137 CTGCCTCTGAGAGTTACCCAG 59.520 57.143 8.88 3.37 0.00 4.45
4401 5946 1.754226 CTCTGCCTCTGAGAGTTACCC 59.246 57.143 8.88 0.00 33.54 3.69
4402 5947 1.136110 GCTCTGCCTCTGAGAGTTACC 59.864 57.143 8.88 0.00 39.42 2.85
4405 5950 2.285824 GGCTCTGCCTCTGAGAGTT 58.714 57.895 8.88 0.00 46.69 3.01
4406 5951 4.032653 GGCTCTGCCTCTGAGAGT 57.967 61.111 8.88 0.00 46.69 3.24
4419 5964 0.747255 TTGATCACTAGAGCGGGCTC 59.253 55.000 12.66 12.66 43.03 4.70
4420 5965 1.195115 TTTGATCACTAGAGCGGGCT 58.805 50.000 0.00 0.00 31.29 5.19
4421 5966 2.024176 TTTTGATCACTAGAGCGGGC 57.976 50.000 0.00 0.00 31.29 6.13
4422 5967 4.035675 GGAAATTTTGATCACTAGAGCGGG 59.964 45.833 0.00 0.00 31.29 6.13
4423 5968 4.035675 GGGAAATTTTGATCACTAGAGCGG 59.964 45.833 0.00 0.00 31.29 5.52
4424 5969 4.260375 CGGGAAATTTTGATCACTAGAGCG 60.260 45.833 0.00 0.00 31.29 5.03
4425 5970 4.496507 GCGGGAAATTTTGATCACTAGAGC 60.497 45.833 0.00 0.00 0.00 4.09
4426 5971 4.035675 GGCGGGAAATTTTGATCACTAGAG 59.964 45.833 0.00 0.00 0.00 2.43
4427 5972 3.945285 GGCGGGAAATTTTGATCACTAGA 59.055 43.478 0.00 0.00 0.00 2.43
4428 5973 3.066760 GGGCGGGAAATTTTGATCACTAG 59.933 47.826 0.00 0.00 0.00 2.57
4429 5974 3.020984 GGGCGGGAAATTTTGATCACTA 58.979 45.455 0.00 0.00 0.00 2.74
4441 5986 1.036707 CTCAAGTTTTGGGCGGGAAA 58.963 50.000 0.00 0.00 0.00 3.13
4444 5989 0.031994 CAACTCAAGTTTTGGGCGGG 59.968 55.000 0.00 0.00 35.83 6.13
4447 5992 2.140065 GCTCAACTCAAGTTTTGGGC 57.860 50.000 0.00 0.00 41.80 5.36
4460 6005 1.000163 TCGTGAGACCTTGAGCTCAAC 60.000 52.381 25.16 15.52 42.27 3.18
4476 6021 0.105964 TGGACCAGAAACCAGTCGTG 59.894 55.000 0.00 0.00 0.00 4.35
4478 6023 2.076863 GAATGGACCAGAAACCAGTCG 58.923 52.381 0.00 0.00 40.44 4.18
4480 6025 3.138283 TCAAGAATGGACCAGAAACCAGT 59.862 43.478 0.00 0.00 39.62 4.00
4481 6026 3.754965 TCAAGAATGGACCAGAAACCAG 58.245 45.455 0.00 0.00 39.62 4.00
4482 6027 3.874383 TCAAGAATGGACCAGAAACCA 57.126 42.857 0.00 0.00 40.57 3.67
4483 6028 3.507622 CCTTCAAGAATGGACCAGAAACC 59.492 47.826 0.00 0.00 0.00 3.27
4485 6030 3.397618 TCCCTTCAAGAATGGACCAGAAA 59.602 43.478 0.00 0.00 31.51 2.52
4487 6032 2.631384 TCCCTTCAAGAATGGACCAGA 58.369 47.619 0.00 0.00 31.51 3.86
4510 6074 3.917985 GCATCAACAATTTACACGGGAAC 59.082 43.478 0.00 0.00 0.00 3.62
4513 6077 3.440173 AGAGCATCAACAATTTACACGGG 59.560 43.478 0.00 0.00 37.82 5.28
4514 6078 4.685169 AGAGCATCAACAATTTACACGG 57.315 40.909 0.00 0.00 37.82 4.94
4515 6079 4.853196 CCAAGAGCATCAACAATTTACACG 59.147 41.667 0.00 0.00 37.82 4.49
4516 6080 6.012658 TCCAAGAGCATCAACAATTTACAC 57.987 37.500 0.00 0.00 37.82 2.90
4543 6107 1.889545 ACAGAAGGCAGCAGTCTTTC 58.110 50.000 0.00 0.00 40.44 2.62
4546 6110 0.471617 ACAACAGAAGGCAGCAGTCT 59.528 50.000 0.00 0.00 0.00 3.24
4549 6113 2.175878 ACTACAACAGAAGGCAGCAG 57.824 50.000 0.00 0.00 0.00 4.24
4551 6115 3.320673 ACTACTACAACAGAAGGCAGC 57.679 47.619 0.00 0.00 0.00 5.25
4553 6117 4.377021 CACAACTACTACAACAGAAGGCA 58.623 43.478 0.00 0.00 0.00 4.75
4554 6118 3.746492 CCACAACTACTACAACAGAAGGC 59.254 47.826 0.00 0.00 0.00 4.35
4555 6119 4.202326 ACCCACAACTACTACAACAGAAGG 60.202 45.833 0.00 0.00 0.00 3.46
4556 6120 4.957296 ACCCACAACTACTACAACAGAAG 58.043 43.478 0.00 0.00 0.00 2.85
4558 6122 4.652421 AGAACCCACAACTACTACAACAGA 59.348 41.667 0.00 0.00 0.00 3.41
4562 6126 5.601313 AGAGAAGAACCCACAACTACTACAA 59.399 40.000 0.00 0.00 0.00 2.41
4563 6127 5.010719 CAGAGAAGAACCCACAACTACTACA 59.989 44.000 0.00 0.00 0.00 2.74
4564 6128 5.010820 ACAGAGAAGAACCCACAACTACTAC 59.989 44.000 0.00 0.00 0.00 2.73
4565 6129 5.145564 ACAGAGAAGAACCCACAACTACTA 58.854 41.667 0.00 0.00 0.00 1.82
4567 6131 4.338379 ACAGAGAAGAACCCACAACTAC 57.662 45.455 0.00 0.00 0.00 2.73
4568 6132 5.365619 GAAACAGAGAAGAACCCACAACTA 58.634 41.667 0.00 0.00 0.00 2.24
4569 6133 3.933861 AACAGAGAAGAACCCACAACT 57.066 42.857 0.00 0.00 0.00 3.16
4570 6134 3.315470 GGAAACAGAGAAGAACCCACAAC 59.685 47.826 0.00 0.00 0.00 3.32
4571 6135 3.202151 AGGAAACAGAGAAGAACCCACAA 59.798 43.478 0.00 0.00 0.00 3.33
4572 6136 2.777692 AGGAAACAGAGAAGAACCCACA 59.222 45.455 0.00 0.00 0.00 4.17
4574 6138 3.202151 ACAAGGAAACAGAGAAGAACCCA 59.798 43.478 0.00 0.00 0.00 4.51
4575 6139 3.821748 ACAAGGAAACAGAGAAGAACCC 58.178 45.455 0.00 0.00 0.00 4.11
4576 6140 5.365619 TGTACAAGGAAACAGAGAAGAACC 58.634 41.667 0.00 0.00 0.00 3.62
4577 6141 6.281405 TCTGTACAAGGAAACAGAGAAGAAC 58.719 40.000 0.00 0.00 45.40 3.01
4578 6142 6.479972 TCTGTACAAGGAAACAGAGAAGAA 57.520 37.500 0.00 0.00 45.40 2.52
4586 6184 6.665992 ATACTCACTCTGTACAAGGAAACA 57.334 37.500 0.00 0.00 0.00 2.83
4602 6200 7.333174 CCTTGGAAGAGAAGAGAAAATACTCAC 59.667 40.741 0.00 0.00 39.14 3.51
4605 6203 7.310983 CCTCCTTGGAAGAGAAGAGAAAATACT 60.311 40.741 0.00 0.00 38.35 2.12
4625 6223 1.494721 TGTTCAAGGCAAGTCCTCCTT 59.505 47.619 0.00 0.00 46.94 3.36
4626 6224 1.140312 TGTTCAAGGCAAGTCCTCCT 58.860 50.000 0.00 0.00 46.94 3.69
4627 6225 1.609072 GTTGTTCAAGGCAAGTCCTCC 59.391 52.381 0.00 0.00 46.94 4.30
4628 6226 2.297701 TGTTGTTCAAGGCAAGTCCTC 58.702 47.619 0.00 0.00 46.94 3.71
4630 6228 3.518634 TTTGTTGTTCAAGGCAAGTCC 57.481 42.857 0.00 0.00 37.35 3.85
4631 6229 4.869861 ACATTTTGTTGTTCAAGGCAAGTC 59.130 37.500 0.00 0.00 37.35 3.01
4632 6230 4.831107 ACATTTTGTTGTTCAAGGCAAGT 58.169 34.783 0.00 0.00 37.35 3.16
4633 6231 5.111293 AGACATTTTGTTGTTCAAGGCAAG 58.889 37.500 0.00 0.00 37.35 4.01
4634 6232 5.083533 AGACATTTTGTTGTTCAAGGCAA 57.916 34.783 0.00 0.00 37.35 4.52
4635 6233 4.734398 AGACATTTTGTTGTTCAAGGCA 57.266 36.364 0.00 0.00 37.35 4.75
4636 6234 4.982295 GGTAGACATTTTGTTGTTCAAGGC 59.018 41.667 0.00 0.00 37.35 4.35
4637 6235 5.008217 TCGGTAGACATTTTGTTGTTCAAGG 59.992 40.000 0.00 0.00 37.35 3.61
4638 6236 6.055231 TCGGTAGACATTTTGTTGTTCAAG 57.945 37.500 0.00 0.00 37.35 3.02
4639 6237 5.587043 ACTCGGTAGACATTTTGTTGTTCAA 59.413 36.000 0.00 0.00 0.00 2.69
4640 6238 5.120399 ACTCGGTAGACATTTTGTTGTTCA 58.880 37.500 0.00 0.00 0.00 3.18
4641 6239 5.668558 ACTCGGTAGACATTTTGTTGTTC 57.331 39.130 0.00 0.00 0.00 3.18
4642 6240 6.518493 TCTACTCGGTAGACATTTTGTTGTT 58.482 36.000 9.00 0.00 39.81 2.83
4643 6241 6.092955 TCTACTCGGTAGACATTTTGTTGT 57.907 37.500 9.00 0.00 39.81 3.32
4644 6242 6.866770 TCTTCTACTCGGTAGACATTTTGTTG 59.133 38.462 11.76 0.00 43.65 3.33
4645 6243 6.989659 TCTTCTACTCGGTAGACATTTTGTT 58.010 36.000 11.76 0.00 43.65 2.83
4646 6244 6.585695 TCTTCTACTCGGTAGACATTTTGT 57.414 37.500 11.76 0.00 43.65 2.83
4647 6245 6.035112 GCTTCTTCTACTCGGTAGACATTTTG 59.965 42.308 11.76 4.54 43.65 2.44
4648 6246 6.071278 AGCTTCTTCTACTCGGTAGACATTTT 60.071 38.462 11.76 0.00 43.65 1.82
4649 6247 5.419471 AGCTTCTTCTACTCGGTAGACATTT 59.581 40.000 11.76 0.00 43.65 2.32
4650 6248 4.951094 AGCTTCTTCTACTCGGTAGACATT 59.049 41.667 11.76 0.00 43.65 2.71
4651 6249 4.336993 CAGCTTCTTCTACTCGGTAGACAT 59.663 45.833 11.76 0.00 43.65 3.06
4652 6250 3.690139 CAGCTTCTTCTACTCGGTAGACA 59.310 47.826 11.76 2.11 43.65 3.41
4653 6251 3.690628 ACAGCTTCTTCTACTCGGTAGAC 59.309 47.826 11.76 3.18 43.65 2.59
4654 6252 3.952931 ACAGCTTCTTCTACTCGGTAGA 58.047 45.455 9.00 9.00 42.49 2.59
4655 6253 4.082679 ACAACAGCTTCTTCTACTCGGTAG 60.083 45.833 5.09 5.09 37.47 3.18
4656 6254 3.825014 ACAACAGCTTCTTCTACTCGGTA 59.175 43.478 0.00 0.00 0.00 4.02
4657 6255 2.628657 ACAACAGCTTCTTCTACTCGGT 59.371 45.455 0.00 0.00 0.00 4.69
4658 6256 3.246619 GACAACAGCTTCTTCTACTCGG 58.753 50.000 0.00 0.00 0.00 4.63
4762 6363 2.685380 CCCTCCCTGTCGCTTCCT 60.685 66.667 0.00 0.00 0.00 3.36
4787 6388 1.153628 CACACACGTAGCCCTAGCC 60.154 63.158 0.00 0.00 41.25 3.93
4788 6389 1.810030 GCACACACGTAGCCCTAGC 60.810 63.158 0.00 0.00 40.32 3.42
4789 6390 1.516386 CGCACACACGTAGCCCTAG 60.516 63.158 0.00 0.00 0.00 3.02
4790 6391 2.270257 ACGCACACACGTAGCCCTA 61.270 57.895 0.00 0.00 46.19 3.53
4791 6392 3.612681 ACGCACACACGTAGCCCT 61.613 61.111 0.00 0.00 46.19 5.19
4792 6393 3.411351 CACGCACACACGTAGCCC 61.411 66.667 0.00 0.00 46.34 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.