Multiple sequence alignment - TraesCS4B01G260500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G260500 chr4B 100.000 5485 0 0 1 5485 527291342 527296826 0.000000e+00 10129.0
1 TraesCS4B01G260500 chr4A 97.816 4579 80 13 262 4827 37052032 37047461 0.000000e+00 7884.0
2 TraesCS4B01G260500 chr4A 87.901 405 20 14 4958 5360 37047437 37047060 3.010000e-122 449.0
3 TraesCS4B01G260500 chr4A 94.615 260 12 1 1 258 37052343 37052084 8.560000e-108 401.0
4 TraesCS4B01G260500 chr4A 91.200 125 10 1 3146 3270 67512883 67512760 9.450000e-38 169.0
5 TraesCS4B01G260500 chr4A 85.294 102 5 3 5361 5452 37047036 37046935 4.520000e-16 97.1
6 TraesCS4B01G260500 chr4D 97.889 3505 57 10 263 3755 429477437 429480936 0.000000e+00 6047.0
7 TraesCS4B01G260500 chr4D 99.210 886 7 0 3740 4625 429480982 429481867 0.000000e+00 1598.0
8 TraesCS4B01G260500 chr4D 95.304 724 25 5 4644 5360 429481859 429482580 0.000000e+00 1140.0
9 TraesCS4B01G260500 chr4D 96.124 258 10 0 1 258 429477127 429477384 6.570000e-114 422.0
10 TraesCS4B01G260500 chr3D 80.913 854 117 18 2073 2910 105428549 105427726 2.790000e-177 632.0
11 TraesCS4B01G260500 chr7B 91.200 125 10 1 3146 3270 52981939 52981816 9.450000e-38 169.0
12 TraesCS4B01G260500 chr7B 90.400 125 11 1 3146 3270 52947760 52947883 4.400000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G260500 chr4B 527291342 527296826 5484 False 10129.000 10129 100.00000 1 5485 1 chr4B.!!$F1 5484
1 TraesCS4B01G260500 chr4A 37046935 37052343 5408 True 2207.775 7884 91.40650 1 5452 4 chr4A.!!$R2 5451
2 TraesCS4B01G260500 chr4D 429477127 429482580 5453 False 2301.750 6047 97.13175 1 5360 4 chr4D.!!$F1 5359
3 TraesCS4B01G260500 chr3D 105427726 105428549 823 True 632.000 632 80.91300 2073 2910 1 chr3D.!!$R1 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.793250 GAGAGTTCGTTGCTTCAGCC 59.207 55.000 0.0 0.0 41.18 4.85 F
1095 1150 1.011968 TCGCAACACGGGATTTCTCG 61.012 55.000 0.0 0.0 43.89 4.04 F
1974 2029 0.247736 ACATGTTCCACTCGGCTCTC 59.752 55.000 0.0 0.0 0.00 3.20 F
2861 2930 2.941720 CCTGGAAGCTGTTGATTCTAGC 59.058 50.000 0.0 0.0 43.01 3.42 F
3496 3566 2.100749 GCCTTTACCAAAACTGTGTGCT 59.899 45.455 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1340 1395 0.529378 CCTGAAGGACTTGCAATGCC 59.471 55.000 1.53 4.45 37.39 4.40 R
2343 2406 1.688735 TCTGATCTGCCATAGGTTCCG 59.311 52.381 0.00 0.00 0.00 4.30 R
3471 3541 0.601057 CAGTTTTGGTAAAGGCCGGG 59.399 55.000 2.18 0.00 0.00 5.73 R
4205 4344 2.978278 GTCTGGATTGATGGAGAGGGAT 59.022 50.000 0.00 0.00 0.00 3.85 R
5271 5417 0.478072 TTCACTTGTCCACTGCCCAT 59.522 50.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.143876 TGGAAAGGGAATGGCTAAGC 57.856 50.000 0.00 0.00 0.00 3.09
69 70 6.275335 AGATTTGGATTGTCTTTGTGTGTTG 58.725 36.000 0.00 0.00 0.00 3.33
121 122 3.070302 TGTGCTCATGTGTTACACTGGTA 59.930 43.478 16.79 0.00 35.11 3.25
147 148 0.793250 GAGAGTTCGTTGCTTCAGCC 59.207 55.000 0.00 0.00 41.18 4.85
193 194 5.300792 TCATTGGGTTTCAGTTGGTACTTTC 59.699 40.000 0.00 0.00 30.26 2.62
239 242 2.283145 AATTCCACTGTGAGCTGCTT 57.717 45.000 9.86 0.00 0.00 3.91
244 247 1.534595 CCACTGTGAGCTGCTTCTTTC 59.465 52.381 9.86 0.00 0.00 2.62
308 359 9.187455 GGAACTGCTGAAATTATTTTTCGTTTA 57.813 29.630 0.00 0.00 0.00 2.01
310 361 9.744468 AACTGCTGAAATTATTTTTCGTTTACT 57.256 25.926 0.00 0.00 0.00 2.24
339 390 2.400399 CTGAAGCAGGAACGTTACGAA 58.600 47.619 13.03 0.00 0.00 3.85
352 403 5.334724 ACGTTACGAATCAGGGATACTTT 57.665 39.130 13.03 0.00 0.00 2.66
432 483 1.207089 CTGCCAGTAGGAATTCGGTGA 59.793 52.381 0.00 0.00 36.89 4.02
650 701 6.072452 GGCTTCAAGAAGTTGCTAACACTAAT 60.072 38.462 11.14 0.00 40.45 1.73
654 705 6.650807 TCAAGAAGTTGCTAACACTAATCCAG 59.349 38.462 0.00 0.00 33.23 3.86
655 706 6.115448 AGAAGTTGCTAACACTAATCCAGT 57.885 37.500 0.00 0.00 38.32 4.00
657 708 4.833390 AGTTGCTAACACTAATCCAGTCC 58.167 43.478 0.00 0.00 34.26 3.85
658 709 4.532521 AGTTGCTAACACTAATCCAGTCCT 59.467 41.667 0.00 0.00 34.26 3.85
659 710 5.013183 AGTTGCTAACACTAATCCAGTCCTT 59.987 40.000 0.00 0.00 34.26 3.36
660 711 4.832248 TGCTAACACTAATCCAGTCCTTG 58.168 43.478 0.00 0.00 34.26 3.61
680 731 6.549364 TCCTTGTTACCAATGTTGTCTGATTT 59.451 34.615 0.00 0.00 0.00 2.17
683 734 7.809546 TGTTACCAATGTTGTCTGATTTGTA 57.190 32.000 0.00 0.00 0.00 2.41
684 735 8.226819 TGTTACCAATGTTGTCTGATTTGTAA 57.773 30.769 0.00 0.00 0.00 2.41
685 736 8.687242 TGTTACCAATGTTGTCTGATTTGTAAA 58.313 29.630 0.00 0.00 27.57 2.01
686 737 8.964150 GTTACCAATGTTGTCTGATTTGTAAAC 58.036 33.333 0.00 0.00 27.57 2.01
762 816 6.852858 GGAATTCTTCCTAGCTTCACATAC 57.147 41.667 5.23 0.00 46.57 2.39
841 895 4.952262 TGCTTGCTCATGTGATTAGTTC 57.048 40.909 0.00 0.00 0.00 3.01
1095 1150 1.011968 TCGCAACACGGGATTTCTCG 61.012 55.000 0.00 0.00 43.89 4.04
1340 1395 3.329386 TCAGAGAGGAAACTTTGATGCG 58.671 45.455 0.00 0.00 44.43 4.73
1617 1672 6.182039 TCTTGCATTGTACTTTAGCATCAC 57.818 37.500 0.00 0.00 34.87 3.06
1659 1714 7.726216 AGTAGTTTTAGAAGCTTTGCCAAAAT 58.274 30.769 0.00 0.36 0.00 1.82
1795 1850 8.610035 CATACAAGTTATATGCATATGCCTCAG 58.390 37.037 26.21 18.02 41.18 3.35
1912 1967 0.970427 TGTAGAGTCTGCATGGCCGA 60.970 55.000 6.86 0.00 0.00 5.54
1974 2029 0.247736 ACATGTTCCACTCGGCTCTC 59.752 55.000 0.00 0.00 0.00 3.20
2861 2930 2.941720 CCTGGAAGCTGTTGATTCTAGC 59.058 50.000 0.00 0.00 43.01 3.42
3003 3072 4.065088 GTGGACAATTCAAGTCTGCTGTA 58.935 43.478 0.00 0.00 36.29 2.74
3251 3320 4.978083 ATGGAATGACTCAAACATCTGC 57.022 40.909 0.00 0.00 0.00 4.26
3471 3541 4.223477 TGGAGTTGGTACTTACACCCATAC 59.777 45.833 10.20 0.00 37.84 2.39
3495 3565 2.469826 GCCTTTACCAAAACTGTGTGC 58.530 47.619 0.00 0.00 0.00 4.57
3496 3566 2.100749 GCCTTTACCAAAACTGTGTGCT 59.899 45.455 0.00 0.00 0.00 4.40
3607 3679 8.577296 TGTACAGGCTATAATAGAACAAGCTAG 58.423 37.037 0.00 0.00 33.67 3.42
3662 3740 5.084818 TGTTACATGACGATCACCAGATT 57.915 39.130 0.00 0.00 33.72 2.40
4006 4145 4.965762 GCAACTACAAAAAGTAACGGTGAC 59.034 41.667 0.00 0.00 30.92 3.67
4099 4238 5.123820 GGATCAATTGCTACACTTGCTGTTA 59.876 40.000 0.00 0.00 33.91 2.41
4609 4749 7.626452 GCTCTCCAACCAGTAAATTATGTGAAC 60.626 40.741 0.00 0.00 0.00 3.18
4688 4828 8.800370 TGAGCAGTTATGGTAAATTATGTGAA 57.200 30.769 0.00 0.00 37.25 3.18
4883 5023 7.772292 TCAGAAATCAATGAAATCCAGTCCTAG 59.228 37.037 0.00 0.00 0.00 3.02
4954 5094 3.632189 GCCATTAGATGAAAATGCCGAC 58.368 45.455 0.00 0.00 33.80 4.79
5005 5149 2.481471 GCAACCGCCCTCTATTGGC 61.481 63.158 0.00 0.00 45.70 4.52
5055 5199 7.763356 AGCAGTAGTTGATGTAGTAGTACTTG 58.237 38.462 8.40 0.00 0.00 3.16
5100 5244 6.068010 TCCAGCTTTTCTTTGAGGAACATTA 58.932 36.000 0.00 0.00 0.00 1.90
5139 5285 7.063191 GCACTTAACCCGAAGTTTTAAAACAAA 59.937 33.333 28.03 10.94 41.30 2.83
5196 5342 3.064900 AGGCTTGGATCTGTTCAGTTC 57.935 47.619 0.00 1.62 0.00 3.01
5203 5349 5.246981 TGGATCTGTTCAGTTCAGGAAAT 57.753 39.130 11.38 0.00 34.15 2.17
5227 5373 5.010112 TGGAAGGAAGACGATCATGATAGAC 59.990 44.000 21.00 15.09 0.00 2.59
5234 5380 4.518590 AGACGATCATGATAGACTGGTGAG 59.481 45.833 21.00 1.10 0.00 3.51
5239 5385 6.550938 ATCATGATAGACTGGTGAGTGAAA 57.449 37.500 6.36 0.00 30.16 2.69
5240 5386 6.550938 TCATGATAGACTGGTGAGTGAAAT 57.449 37.500 0.00 0.00 30.16 2.17
5271 5417 3.719268 AAGGATATGCACCACACTGAA 57.281 42.857 0.00 0.00 0.00 3.02
5313 5460 5.006386 AGAGAATGTTTTGTGATGTCTCCC 58.994 41.667 0.00 0.00 32.27 4.30
5356 5503 4.157289 TCAGTATCCCAGTGACGTTTACTC 59.843 45.833 3.72 0.00 31.34 2.59
5359 5529 4.553330 ATCCCAGTGACGTTTACTCAAT 57.447 40.909 3.72 0.00 0.00 2.57
5365 5535 6.370442 CCCAGTGACGTTTACTCAATATTCAA 59.630 38.462 3.72 0.00 0.00 2.69
5378 5548 7.765307 ACTCAATATTCAAAACTAGCCACATG 58.235 34.615 0.00 0.00 0.00 3.21
5383 5553 9.461312 AATATTCAAAACTAGCCACATGAAGTA 57.539 29.630 0.00 0.00 31.14 2.24
5414 5584 6.688073 TTCAAAGGAGTAGAGATTTCCACT 57.312 37.500 0.00 0.00 33.32 4.00
5415 5585 6.287589 TCAAAGGAGTAGAGATTTCCACTC 57.712 41.667 3.62 3.62 37.32 3.51
5416 5586 6.019748 TCAAAGGAGTAGAGATTTCCACTCT 58.980 40.000 10.79 0.00 45.15 3.24
5428 5608 8.308207 AGAGATTTCCACTCTTTAAGTCAGTAC 58.692 37.037 0.00 0.00 41.20 2.73
5447 5627 5.009010 CAGTACTGCCACTTCATTGAAACTT 59.991 40.000 10.54 0.00 0.00 2.66
5452 5632 6.265196 ACTGCCACTTCATTGAAACTTTGATA 59.735 34.615 0.01 0.00 0.00 2.15
5453 5633 7.048629 TGCCACTTCATTGAAACTTTGATAA 57.951 32.000 0.01 0.00 0.00 1.75
5454 5634 7.669427 TGCCACTTCATTGAAACTTTGATAAT 58.331 30.769 0.01 0.00 0.00 1.28
5455 5635 7.599621 TGCCACTTCATTGAAACTTTGATAATG 59.400 33.333 0.01 0.00 0.00 1.90
5456 5636 7.412237 GCCACTTCATTGAAACTTTGATAATGC 60.412 37.037 0.01 0.00 0.00 3.56
5457 5637 7.063780 CCACTTCATTGAAACTTTGATAATGCC 59.936 37.037 0.01 0.00 0.00 4.40
5458 5638 7.599621 CACTTCATTGAAACTTTGATAATGCCA 59.400 33.333 0.01 0.00 0.00 4.92
5459 5639 8.149647 ACTTCATTGAAACTTTGATAATGCCAA 58.850 29.630 0.01 0.00 0.00 4.52
5460 5640 7.887996 TCATTGAAACTTTGATAATGCCAAC 57.112 32.000 0.00 0.00 0.00 3.77
5461 5641 7.440198 TCATTGAAACTTTGATAATGCCAACA 58.560 30.769 0.00 0.00 0.00 3.33
5462 5642 7.930325 TCATTGAAACTTTGATAATGCCAACAA 59.070 29.630 0.00 0.00 0.00 2.83
5463 5643 8.723311 CATTGAAACTTTGATAATGCCAACAAT 58.277 29.630 0.00 0.00 0.00 2.71
5464 5644 9.941325 ATTGAAACTTTGATAATGCCAACAATA 57.059 25.926 0.00 0.00 0.00 1.90
5465 5645 9.941325 TTGAAACTTTGATAATGCCAACAATAT 57.059 25.926 0.00 0.00 0.00 1.28
5466 5646 9.941325 TGAAACTTTGATAATGCCAACAATATT 57.059 25.926 0.00 0.00 0.00 1.28
5477 5657 6.724694 TGCCAACAATATTTTCTTCATTGC 57.275 33.333 0.00 0.00 33.82 3.56
5478 5658 6.228995 TGCCAACAATATTTTCTTCATTGCA 58.771 32.000 0.00 0.00 33.82 4.08
5479 5659 6.369340 TGCCAACAATATTTTCTTCATTGCAG 59.631 34.615 0.00 0.00 33.82 4.41
5480 5660 6.673796 GCCAACAATATTTTCTTCATTGCAGC 60.674 38.462 0.00 0.00 33.82 5.25
5481 5661 6.592607 CCAACAATATTTTCTTCATTGCAGCT 59.407 34.615 0.00 0.00 33.82 4.24
5482 5662 7.118680 CCAACAATATTTTCTTCATTGCAGCTT 59.881 33.333 0.00 0.00 33.82 3.74
5483 5663 9.142515 CAACAATATTTTCTTCATTGCAGCTTA 57.857 29.630 0.00 0.00 33.82 3.09
5484 5664 8.693542 ACAATATTTTCTTCATTGCAGCTTAC 57.306 30.769 0.00 0.00 33.82 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.670939 GCTTAGCCATTCCCTTTCCAT 58.329 47.619 0.00 0.00 0.00 3.41
24 25 5.188434 TCTTGGAATCTACATGAAGCAAGG 58.812 41.667 0.00 0.00 0.00 3.61
69 70 6.487689 AGTGAGTTAGCTACAAATGAAAGC 57.512 37.500 0.00 4.94 36.48 3.51
121 122 5.237815 TGAAGCAACGAACTCTCACATTAT 58.762 37.500 0.00 0.00 0.00 1.28
147 148 3.117738 ACATTCTCCTTATGCCCTCCTTG 60.118 47.826 0.00 0.00 0.00 3.61
193 194 4.393934 CTGTATAAACACACACGCACATG 58.606 43.478 0.00 0.00 0.00 3.21
239 242 3.667476 TGGTGGTGCCAGGAAAGA 58.333 55.556 0.00 0.00 43.61 2.52
258 261 2.027377 CCACAATCCTGAGAAGAGCTGT 60.027 50.000 0.00 0.00 0.00 4.40
259 262 2.630158 CCACAATCCTGAGAAGAGCTG 58.370 52.381 0.00 0.00 0.00 4.24
260 263 1.558756 CCCACAATCCTGAGAAGAGCT 59.441 52.381 0.00 0.00 0.00 4.09
302 353 4.307432 CTTCAGGAAGAAGCAGTAAACGA 58.693 43.478 2.88 0.00 46.54 3.85
336 387 9.102757 CATAATCCATAAAGTATCCCTGATTCG 57.897 37.037 0.00 0.00 0.00 3.34
339 390 8.776119 CCTCATAATCCATAAAGTATCCCTGAT 58.224 37.037 0.00 0.00 0.00 2.90
352 403 5.163001 TGCATTGGTTCCCTCATAATCCATA 60.163 40.000 0.00 0.00 0.00 2.74
379 430 0.393673 CCACCACCCATCACGCATTA 60.394 55.000 0.00 0.00 0.00 1.90
432 483 1.080705 GTCAGCAAGGACGTAGCGT 60.081 57.895 0.00 0.00 45.10 5.07
660 711 8.964150 GTTTACAAATCAGACAACATTGGTAAC 58.036 33.333 0.00 0.00 31.06 2.50
680 731 3.823281 TTCACTTCTCGGGTGTTTACA 57.177 42.857 0.00 0.00 36.25 2.41
683 734 3.277142 AGTTTCACTTCTCGGGTGTTT 57.723 42.857 0.00 0.00 36.25 2.83
684 735 3.277142 AAGTTTCACTTCTCGGGTGTT 57.723 42.857 0.00 0.00 31.77 3.32
685 736 3.277142 AAAGTTTCACTTCTCGGGTGT 57.723 42.857 0.00 0.00 37.47 4.16
686 737 4.598062 GAAAAAGTTTCACTTCTCGGGTG 58.402 43.478 0.00 0.00 37.47 4.61
841 895 2.871096 TAAGGTTGCACTAGTTGGGG 57.129 50.000 0.00 0.00 0.00 4.96
1340 1395 0.529378 CCTGAAGGACTTGCAATGCC 59.471 55.000 1.53 4.45 37.39 4.40
1617 1672 4.442706 ACTACTACGGCAATTTCAGATGG 58.557 43.478 0.00 0.00 0.00 3.51
1659 1714 8.107095 ACAAAGCCCTCATACATTAGACTTTTA 58.893 33.333 0.00 0.00 0.00 1.52
1795 1850 7.487189 CAGATTGGATGTTGCAGAGATTTTAAC 59.513 37.037 0.00 0.00 0.00 2.01
1912 1967 4.506802 GGAAGTACCTTCAGGAACACCATT 60.507 45.833 0.00 0.00 41.77 3.16
1974 2029 8.067751 TCATCCATAGGTTAGGAAGATATTCG 57.932 38.462 0.00 0.00 37.48 3.34
2343 2406 1.688735 TCTGATCTGCCATAGGTTCCG 59.311 52.381 0.00 0.00 0.00 4.30
3003 3072 6.996509 TGCAAGCAAAATCCTAAAAGATTCT 58.003 32.000 0.00 0.00 35.40 2.40
3251 3320 3.922240 CGATGGATTTTGCTTTGTCAAGG 59.078 43.478 0.00 0.00 0.00 3.61
3471 3541 0.601057 CAGTTTTGGTAAAGGCCGGG 59.399 55.000 2.18 0.00 0.00 5.73
3495 3565 6.150641 GGTAAGGTTTAGAGGTTAAAAGCCAG 59.849 42.308 0.00 0.00 34.44 4.85
3496 3566 6.005823 GGTAAGGTTTAGAGGTTAAAAGCCA 58.994 40.000 0.00 0.00 34.44 4.75
3596 3668 3.136626 AGTTGGTGTTCCTAGCTTGTTCT 59.863 43.478 0.00 0.00 34.23 3.01
3607 3679 1.067060 GGCTGACAAAGTTGGTGTTCC 59.933 52.381 0.00 0.00 0.00 3.62
4099 4238 8.975663 TCTGAAAATCATAGAGCAGAATGAAT 57.024 30.769 0.00 0.00 39.69 2.57
4205 4344 2.978278 GTCTGGATTGATGGAGAGGGAT 59.022 50.000 0.00 0.00 0.00 3.85
4609 4749 7.177921 TCCATCTAAGGAAATGGGTATACTACG 59.822 40.741 2.25 0.00 42.31 3.51
4688 4828 8.574251 TGCAACATTAACAGAAATACCTACAT 57.426 30.769 0.00 0.00 0.00 2.29
4965 5109 4.024218 GCACTGATCTTTATGGATGCAGTC 60.024 45.833 0.00 0.00 34.82 3.51
5005 5149 1.396996 CAGTAAAAATCAGGGTCGGCG 59.603 52.381 0.00 0.00 0.00 6.46
5009 5153 6.977213 TGCTTTAACAGTAAAAATCAGGGTC 58.023 36.000 0.00 0.00 0.00 4.46
5051 5195 8.517323 AGATATTCCTATCTGAAATCCCAAGT 57.483 34.615 0.00 0.00 42.04 3.16
5055 5199 7.502060 TGGAGATATTCCTATCTGAAATCCC 57.498 40.000 0.04 0.00 46.92 3.85
5100 5244 4.202212 GGGTTAAGTGCAGAAAACCAATGT 60.202 41.667 20.00 0.00 42.61 2.71
5139 5285 2.551721 CCATCACTTCACAGAGCAGGTT 60.552 50.000 0.00 0.00 0.00 3.50
5196 5342 3.334583 TCGTCTTCCTTCCATTTCCTG 57.665 47.619 0.00 0.00 0.00 3.86
5203 5349 5.010112 GTCTATCATGATCGTCTTCCTTCCA 59.990 44.000 12.53 0.00 0.00 3.53
5227 5373 4.701651 TGCTTGGATAATTTCACTCACCAG 59.298 41.667 0.00 0.00 0.00 4.00
5234 5380 7.383300 GCATATCCTTTGCTTGGATAATTTCAC 59.617 37.037 13.83 2.03 46.03 3.18
5239 5385 5.244626 GGTGCATATCCTTTGCTTGGATAAT 59.755 40.000 13.83 4.39 46.03 1.28
5240 5386 4.584325 GGTGCATATCCTTTGCTTGGATAA 59.416 41.667 13.83 0.42 46.03 1.75
5271 5417 0.478072 TTCACTTGTCCACTGCCCAT 59.522 50.000 0.00 0.00 0.00 4.00
5313 5460 9.823647 ATACTGATTGTAAACTCTGGTAAGATG 57.176 33.333 0.00 0.00 34.45 2.90
5356 5503 8.246180 ACTTCATGTGGCTAGTTTTGAATATTG 58.754 33.333 0.00 0.00 0.00 1.90
5359 5529 8.100791 AGTACTTCATGTGGCTAGTTTTGAATA 58.899 33.333 0.00 0.00 0.00 1.75
5365 5535 5.865085 TGAAGTACTTCATGTGGCTAGTTT 58.135 37.500 30.07 0.00 43.90 2.66
5378 5548 5.612351 ACTCCTTTGAAGGTGAAGTACTTC 58.388 41.667 25.73 25.73 46.54 3.01
5383 5553 5.148502 TCTCTACTCCTTTGAAGGTGAAGT 58.851 41.667 16.38 11.72 46.54 3.01
5414 5584 5.069914 TGAAGTGGCAGTACTGACTTAAAGA 59.930 40.000 28.56 5.10 39.96 2.52
5415 5585 5.297547 TGAAGTGGCAGTACTGACTTAAAG 58.702 41.667 28.56 0.00 39.96 1.85
5416 5586 5.284861 TGAAGTGGCAGTACTGACTTAAA 57.715 39.130 28.56 16.12 39.96 1.52
5428 5608 4.935702 TCAAAGTTTCAATGAAGTGGCAG 58.064 39.130 0.00 0.00 0.00 4.85
5452 5632 7.390996 TGCAATGAAGAAAATATTGTTGGCATT 59.609 29.630 0.00 0.00 34.98 3.56
5453 5633 6.879993 TGCAATGAAGAAAATATTGTTGGCAT 59.120 30.769 0.00 0.00 34.98 4.40
5454 5634 6.228995 TGCAATGAAGAAAATATTGTTGGCA 58.771 32.000 0.00 0.00 34.98 4.92
5455 5635 6.673796 GCTGCAATGAAGAAAATATTGTTGGC 60.674 38.462 0.00 0.00 34.98 4.52
5456 5636 6.592607 AGCTGCAATGAAGAAAATATTGTTGG 59.407 34.615 1.02 0.00 34.98 3.77
5457 5637 7.591006 AGCTGCAATGAAGAAAATATTGTTG 57.409 32.000 1.02 0.00 34.98 3.33
5458 5638 9.143631 GTAAGCTGCAATGAAGAAAATATTGTT 57.856 29.630 1.02 0.00 34.98 2.83
5459 5639 8.693542 GTAAGCTGCAATGAAGAAAATATTGT 57.306 30.769 1.02 0.00 34.98 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.