Multiple sequence alignment - TraesCS4B01G260400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G260400 chr4B 100.000 7861 0 0 1 7861 527280293 527288153 0.000000e+00 14517.0
1 TraesCS4B01G260400 chr4B 90.332 331 7 6 5165 5470 527283546 527283876 2.040000e-110 411.0
2 TraesCS4B01G260400 chr4B 94.262 122 7 0 2222 2343 636708075 636708196 3.750000e-43 187.0
3 TraesCS4B01G260400 chr4B 100.000 33 0 0 752 784 88423397 88423365 2.370000e-05 62.1
4 TraesCS4B01G260400 chr4B 100.000 33 0 0 752 784 615140396 615140428 2.370000e-05 62.1
5 TraesCS4B01G260400 chr5B 91.891 2269 118 17 3254 5469 330742288 330740033 0.000000e+00 3110.0
6 TraesCS4B01G260400 chr5B 89.661 2302 153 41 3250 5473 75905199 75902905 0.000000e+00 2854.0
7 TraesCS4B01G260400 chr5B 87.097 465 31 13 4987 5424 328240040 328239578 4.240000e-137 499.0
8 TraesCS4B01G260400 chr5B 94.262 122 7 0 2227 2348 517217104 517216983 3.750000e-43 187.0
9 TraesCS4B01G260400 chr5B 95.789 95 3 1 5477 5570 166379086 166379180 1.370000e-32 152.0
10 TraesCS4B01G260400 chr5B 97.222 36 0 1 748 783 275312041 275312007 8.520000e-05 60.2
11 TraesCS4B01G260400 chr5B 91.111 45 1 3 748 791 665750687 665750729 3.060000e-04 58.4
12 TraesCS4B01G260400 chr1D 91.784 2276 121 15 3246 5469 98828178 98830439 0.000000e+00 3107.0
13 TraesCS4B01G260400 chr1D 91.564 2276 107 22 3254 5458 98830445 98832706 0.000000e+00 3061.0
14 TraesCS4B01G260400 chr1D 90.758 2283 123 27 3254 5472 258349992 258347734 0.000000e+00 2966.0
15 TraesCS4B01G260400 chr1D 90.337 1304 95 10 3958 5231 55621536 55620234 0.000000e+00 1681.0
16 TraesCS4B01G260400 chr1D 92.800 125 7 2 2223 2346 453059914 453060037 6.270000e-41 180.0
17 TraesCS4B01G260400 chr2D 91.612 2277 108 17 3254 5469 441769634 441767380 0.000000e+00 3070.0
18 TraesCS4B01G260400 chr2D 93.823 939 46 4 4542 5469 273001539 273002476 0.000000e+00 1402.0
19 TraesCS4B01G260400 chr2D 91.667 324 8 8 5165 5469 409602217 409601894 1.570000e-116 431.0
20 TraesCS4B01G260400 chr2D 89.286 336 7 3 5164 5470 441769635 441769300 2.060000e-105 394.0
21 TraesCS4B01G260400 chr2D 91.603 131 11 0 2218 2348 489410196 489410066 1.740000e-41 182.0
22 TraesCS4B01G260400 chr4D 91.471 2263 121 13 3256 5469 274464547 274462308 0.000000e+00 3044.0
23 TraesCS4B01G260400 chr4D 91.354 2024 105 20 3246 5231 448524503 448522512 0.000000e+00 2704.0
24 TraesCS4B01G260400 chr4D 93.261 1380 51 12 857 2228 429469996 429471341 0.000000e+00 1995.0
25 TraesCS4B01G260400 chr4D 91.184 1191 54 23 6691 7861 429473470 429474629 0.000000e+00 1570.0
26 TraesCS4B01G260400 chr4D 96.187 918 30 3 2340 3253 429471338 429472254 0.000000e+00 1496.0
27 TraesCS4B01G260400 chr4D 97.233 795 18 4 5470 6263 429472250 429473041 0.000000e+00 1343.0
28 TraesCS4B01G260400 chr4D 92.101 557 27 6 2 549 429469260 429469808 0.000000e+00 769.0
29 TraesCS4B01G260400 chr4D 93.711 318 11 4 6272 6580 429473092 429473409 1.190000e-127 468.0
30 TraesCS4B01G260400 chr4D 98.222 225 4 0 5246 5470 274464441 274464217 2.060000e-105 394.0
31 TraesCS4B01G260400 chr4D 89.286 336 7 11 5164 5470 448524493 448524158 2.060000e-105 394.0
32 TraesCS4B01G260400 chr4D 97.333 225 6 0 5246 5470 36535390 36535166 4.450000e-102 383.0
33 TraesCS4B01G260400 chr4D 100.000 58 0 0 787 844 429469953 429470010 3.000000e-19 108.0
34 TraesCS4B01G260400 chr4D 100.000 33 0 0 752 784 416054696 416054728 2.370000e-05 62.1
35 TraesCS4B01G260400 chr4D 95.000 40 1 1 745 784 473169099 473169137 2.370000e-05 62.1
36 TraesCS4B01G260400 chr6B 90.395 2280 140 17 3254 5469 439354023 439356287 0.000000e+00 2924.0
37 TraesCS4B01G260400 chr6B 95.000 120 6 0 2225 2344 530129410 530129529 1.040000e-43 189.0
38 TraesCS4B01G260400 chr3B 91.566 2146 118 25 3371 5469 647175483 647173354 0.000000e+00 2902.0
39 TraesCS4B01G260400 chr3B 89.851 335 22 9 6731 7062 358640130 358639805 3.390000e-113 420.0
40 TraesCS4B01G260400 chr3B 88.657 335 26 8 6731 7062 259702585 259702260 1.590000e-106 398.0
41 TraesCS4B01G260400 chr3B 86.747 166 15 1 6420 6578 358640426 358640261 2.250000e-40 178.0
42 TraesCS4B01G260400 chr3B 86.145 166 16 2 6420 6578 259702882 259702717 1.050000e-38 172.0
43 TraesCS4B01G260400 chr3B 94.000 100 5 1 5472 5570 114098819 114098918 4.910000e-32 150.0
44 TraesCS4B01G260400 chr7A 89.670 2275 179 24 3254 5482 412909205 412906941 0.000000e+00 2848.0
45 TraesCS4B01G260400 chr6D 92.468 1965 105 13 3254 5190 211665830 211667779 0.000000e+00 2769.0
46 TraesCS4B01G260400 chr6D 91.892 111 8 1 5474 5583 363032531 363032641 3.800000e-33 154.0
47 TraesCS4B01G260400 chr6D 100.000 33 0 0 752 784 371523335 371523303 2.370000e-05 62.1
48 TraesCS4B01G260400 chr6D 97.297 37 0 1 748 784 460463950 460463915 2.370000e-05 62.1
49 TraesCS4B01G260400 chr1A 91.667 2016 131 14 3248 5229 99902789 99900777 0.000000e+00 2758.0
50 TraesCS4B01G260400 chr6A 90.323 2139 132 24 3254 5338 294639815 294641932 0.000000e+00 2734.0
51 TraesCS4B01G260400 chr6A 93.976 249 11 4 5225 5470 242200826 242201073 2.680000e-99 374.0
52 TraesCS4B01G260400 chr3D 91.307 2013 132 17 3254 5231 497494020 497492016 0.000000e+00 2708.0
53 TraesCS4B01G260400 chr3D 90.272 2097 131 23 3432 5469 606869803 606871885 0.000000e+00 2675.0
54 TraesCS4B01G260400 chr1B 90.209 2012 163 12 3254 5231 287728103 287726092 0.000000e+00 2593.0
55 TraesCS4B01G260400 chr1B 90.000 110 10 1 5468 5576 587275916 587275807 2.960000e-29 141.0
56 TraesCS4B01G260400 chr1B 97.368 38 0 1 747 784 171407781 171407817 6.590000e-06 63.9
57 TraesCS4B01G260400 chr4A 94.690 1337 55 12 895 2228 37062406 37061083 0.000000e+00 2061.0
58 TraesCS4B01G260400 chr4A 97.233 795 18 4 5470 6263 37060214 37059423 0.000000e+00 1343.0
59 TraesCS4B01G260400 chr4A 91.575 914 40 10 2340 3253 37061086 37060210 0.000000e+00 1227.0
60 TraesCS4B01G260400 chr4A 92.693 698 34 10 6715 7401 37058569 37057878 0.000000e+00 990.0
61 TraesCS4B01G260400 chr4A 85.634 710 46 26 2 694 37063183 37062513 0.000000e+00 695.0
62 TraesCS4B01G260400 chr4A 86.486 481 28 16 7403 7853 37055140 37054667 1.970000e-135 494.0
63 TraesCS4B01G260400 chr4A 93.493 292 15 4 6272 6559 37059372 37059081 1.570000e-116 431.0
64 TraesCS4B01G260400 chr4A 97.297 74 2 0 2823 2896 37058967 37058894 8.280000e-25 126.0
65 TraesCS4B01G260400 chr4A 97.619 42 0 1 743 784 13521846 13521886 3.940000e-08 71.3
66 TraesCS4B01G260400 chr4A 97.297 37 0 1 748 784 358147970 358147935 2.370000e-05 62.1
67 TraesCS4B01G260400 chr4A 100.000 28 0 0 2928 2955 37058871 37058898 1.400000e-02 52.8
68 TraesCS4B01G260400 chr7B 96.581 117 4 0 2227 2343 434925907 434926023 2.240000e-45 195.0
69 TraesCS4B01G260400 chr7B 93.130 131 7 2 2215 2343 436210920 436210790 2.900000e-44 191.0
70 TraesCS4B01G260400 chr7B 89.116 147 13 3 2212 2357 462842101 462842245 6.270000e-41 180.0
71 TraesCS4B01G260400 chr7B 94.444 108 4 2 5475 5581 162120910 162120804 1.750000e-36 165.0
72 TraesCS4B01G260400 chr7D 90.647 139 11 2 2220 2357 50726737 50726600 4.840000e-42 183.0
73 TraesCS4B01G260400 chr7D 91.304 46 3 1 739 784 620475434 620475390 2.370000e-05 62.1
74 TraesCS4B01G260400 chr3A 95.876 97 3 1 5475 5570 470095680 470095776 1.060000e-33 156.0
75 TraesCS4B01G260400 chr5D 94.845 97 4 1 5475 5570 139441014 139440918 4.910000e-32 150.0
76 TraesCS4B01G260400 chrUn 100.000 33 0 0 752 784 15657159 15657127 2.370000e-05 62.1
77 TraesCS4B01G260400 chrUn 100.000 33 0 0 752 784 278315503 278315471 2.370000e-05 62.1
78 TraesCS4B01G260400 chrUn 100.000 33 0 0 752 784 329233045 329233077 2.370000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G260400 chr4B 527280293 527288153 7860 False 14517.000 14517 100.000000 1 7861 1 chr4B.!!$F1 7860
1 TraesCS4B01G260400 chr5B 330740033 330742288 2255 True 3110.000 3110 91.891000 3254 5469 1 chr5B.!!$R4 2215
2 TraesCS4B01G260400 chr5B 75902905 75905199 2294 True 2854.000 2854 89.661000 3250 5473 1 chr5B.!!$R1 2223
3 TraesCS4B01G260400 chr1D 98828178 98832706 4528 False 3084.000 3107 91.674000 3246 5469 2 chr1D.!!$F2 2223
4 TraesCS4B01G260400 chr1D 258347734 258349992 2258 True 2966.000 2966 90.758000 3254 5472 1 chr1D.!!$R2 2218
5 TraesCS4B01G260400 chr1D 55620234 55621536 1302 True 1681.000 1681 90.337000 3958 5231 1 chr1D.!!$R1 1273
6 TraesCS4B01G260400 chr2D 441767380 441769635 2255 True 1732.000 3070 90.449000 3254 5470 2 chr2D.!!$R3 2216
7 TraesCS4B01G260400 chr2D 273001539 273002476 937 False 1402.000 1402 93.823000 4542 5469 1 chr2D.!!$F1 927
8 TraesCS4B01G260400 chr4D 274462308 274464547 2239 True 1719.000 3044 94.846500 3256 5470 2 chr4D.!!$R2 2214
9 TraesCS4B01G260400 chr4D 448522512 448524503 1991 True 1549.000 2704 90.320000 3246 5470 2 chr4D.!!$R3 2224
10 TraesCS4B01G260400 chr4D 429469260 429474629 5369 False 1107.000 1995 94.811000 2 7861 7 chr4D.!!$F3 7859
11 TraesCS4B01G260400 chr6B 439354023 439356287 2264 False 2924.000 2924 90.395000 3254 5469 1 chr6B.!!$F1 2215
12 TraesCS4B01G260400 chr3B 647173354 647175483 2129 True 2902.000 2902 91.566000 3371 5469 1 chr3B.!!$R1 2098
13 TraesCS4B01G260400 chr3B 358639805 358640426 621 True 299.000 420 88.299000 6420 7062 2 chr3B.!!$R3 642
14 TraesCS4B01G260400 chr3B 259702260 259702882 622 True 285.000 398 87.401000 6420 7062 2 chr3B.!!$R2 642
15 TraesCS4B01G260400 chr7A 412906941 412909205 2264 True 2848.000 2848 89.670000 3254 5482 1 chr7A.!!$R1 2228
16 TraesCS4B01G260400 chr6D 211665830 211667779 1949 False 2769.000 2769 92.468000 3254 5190 1 chr6D.!!$F1 1936
17 TraesCS4B01G260400 chr1A 99900777 99902789 2012 True 2758.000 2758 91.667000 3248 5229 1 chr1A.!!$R1 1981
18 TraesCS4B01G260400 chr6A 294639815 294641932 2117 False 2734.000 2734 90.323000 3254 5338 1 chr6A.!!$F2 2084
19 TraesCS4B01G260400 chr3D 497492016 497494020 2004 True 2708.000 2708 91.307000 3254 5231 1 chr3D.!!$R1 1977
20 TraesCS4B01G260400 chr3D 606869803 606871885 2082 False 2675.000 2675 90.272000 3432 5469 1 chr3D.!!$F1 2037
21 TraesCS4B01G260400 chr1B 287726092 287728103 2011 True 2593.000 2593 90.209000 3254 5231 1 chr1B.!!$R1 1977
22 TraesCS4B01G260400 chr4A 37054667 37063183 8516 True 920.875 2061 92.387625 2 7853 8 chr4A.!!$R2 7851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1020 0.037734 GGTTCCCCACAATCGTTCCT 59.962 55.000 0.00 0.00 0.00 3.36 F
2245 2287 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17 F
2246 2288 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40 F
2248 2290 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24 F
2256 2298 0.458889 TCCGGAATTACTTGTCGCGG 60.459 55.000 6.13 0.00 0.00 6.46 F
2338 2380 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30 F
4405 4522 1.210931 CGTAGGTCGCGAACTCCAA 59.789 57.895 33.13 11.19 0.00 3.53 F
5009 5196 0.904865 TGGCAACCGTCATCTCCTCT 60.905 55.000 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2226 2268 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
3988 4084 1.029947 CCTCCAAACGGCCATGTACC 61.030 60.000 2.24 0.00 0.00 3.34 R
4001 4097 2.843545 GGGCCACAGAACCTCCAA 59.156 61.111 4.39 0.00 0.00 3.53 R
4405 4522 1.517832 CCGCCGAGATTCTCCAAGT 59.482 57.895 8.09 0.00 0.00 3.16 R
4527 4644 4.753877 CTTCGCCAGCGTCGACGA 62.754 66.667 39.74 16.52 43.02 4.20 R
4691 4816 2.687200 CCCATCCACCAGGTCCGA 60.687 66.667 0.00 0.00 35.89 4.55 R
6692 9686 1.195900 GCAAAATCGTCCGTGCACTAA 59.804 47.619 16.19 0.00 36.97 2.24 R
7235 10239 1.003718 AGCCGTCTTGGTAAGTGGC 60.004 57.895 14.99 14.99 45.22 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
231 238 7.659652 ACAACTTACAGAAGTCTTTAGATGC 57.340 36.000 0.00 0.00 45.50 3.91
255 262 3.928375 GCATACTTGCTTGGTGAATTTGG 59.072 43.478 0.00 0.00 45.77 3.28
426 441 8.437742 CAGAAAAATTTGAAACATCATACAGGC 58.562 33.333 0.00 0.00 0.00 4.85
428 443 7.894376 AAAATTTGAAACATCATACAGGCAG 57.106 32.000 0.00 0.00 0.00 4.85
429 444 6.594788 AATTTGAAACATCATACAGGCAGT 57.405 33.333 0.00 0.00 0.00 4.40
430 445 7.701539 AATTTGAAACATCATACAGGCAGTA 57.298 32.000 0.00 0.00 37.06 2.74
500 515 3.902881 TTTGTGCTGTGAAAACCCAAT 57.097 38.095 0.00 0.00 0.00 3.16
537 552 7.201522 CGCTTTTCTCAGCACTATAAACATGTA 60.202 37.037 0.00 0.00 40.09 2.29
611 627 8.555166 AAACATGTTTTTAATACGTGACACAG 57.445 30.769 18.13 1.26 36.31 3.66
633 649 4.159135 AGTGCTGACATTTTCCCATCATTC 59.841 41.667 0.00 0.00 0.00 2.67
643 659 5.486735 TTTCCCATCATTCAAATGTGCTT 57.513 34.783 2.85 0.00 37.65 3.91
702 728 6.581712 GCTGCTATGGGGATTTGATTTTTAA 58.418 36.000 0.00 0.00 0.00 1.52
732 758 9.151177 ACATTCAAATCTAAATATGGGCATCTT 57.849 29.630 0.00 0.00 0.00 2.40
734 760 9.991906 ATTCAAATCTAAATATGGGCATCTTTG 57.008 29.630 0.00 0.00 0.00 2.77
735 761 8.765488 TCAAATCTAAATATGGGCATCTTTGA 57.235 30.769 0.00 0.00 0.00 2.69
736 762 9.370930 TCAAATCTAAATATGGGCATCTTTGAT 57.629 29.630 0.00 0.00 0.00 2.57
737 763 9.991906 CAAATCTAAATATGGGCATCTTTGATT 57.008 29.630 0.00 0.00 0.00 2.57
739 765 6.985117 TCTAAATATGGGCATCTTTGATTGC 58.015 36.000 0.00 0.00 38.14 3.56
741 767 5.617528 AATATGGGCATCTTTGATTGCAA 57.382 34.783 0.00 0.00 40.66 4.08
771 797 8.641499 TTTTGTTTTGTTGATAGCTTACCAAG 57.359 30.769 0.00 0.00 0.00 3.61
785 811 3.359002 CAAGCTGACCACTTGGCC 58.641 61.111 0.00 0.00 40.68 5.36
786 812 1.529010 CAAGCTGACCACTTGGCCA 60.529 57.895 0.00 0.00 40.68 5.36
787 813 1.108727 CAAGCTGACCACTTGGCCAA 61.109 55.000 19.25 19.25 40.68 4.52
788 814 0.396974 AAGCTGACCACTTGGCCAAA 60.397 50.000 20.91 1.89 39.32 3.28
789 815 0.178953 AGCTGACCACTTGGCCAAAT 60.179 50.000 20.91 6.63 39.32 2.32
830 856 6.873997 ACTATATGAATCACACGTCTTCCAA 58.126 36.000 0.00 0.00 0.00 3.53
831 857 7.327975 ACTATATGAATCACACGTCTTCCAAA 58.672 34.615 0.00 0.00 0.00 3.28
832 858 7.987458 ACTATATGAATCACACGTCTTCCAAAT 59.013 33.333 0.00 0.00 0.00 2.32
833 859 5.964958 ATGAATCACACGTCTTCCAAATT 57.035 34.783 0.00 0.00 0.00 1.82
834 860 5.356882 TGAATCACACGTCTTCCAAATTC 57.643 39.130 0.00 0.00 0.00 2.17
835 861 4.084066 TGAATCACACGTCTTCCAAATTCG 60.084 41.667 0.00 0.00 0.00 3.34
836 862 3.100658 TCACACGTCTTCCAAATTCGA 57.899 42.857 0.00 0.00 0.00 3.71
837 863 3.459145 TCACACGTCTTCCAAATTCGAA 58.541 40.909 0.00 0.00 0.00 3.71
838 864 3.493129 TCACACGTCTTCCAAATTCGAAG 59.507 43.478 3.35 8.33 38.47 3.79
839 865 2.806244 ACACGTCTTCCAAATTCGAAGG 59.194 45.455 3.35 0.00 37.83 3.46
840 866 3.064207 CACGTCTTCCAAATTCGAAGGA 58.936 45.455 3.35 1.84 37.83 3.36
841 867 3.496884 CACGTCTTCCAAATTCGAAGGAA 59.503 43.478 14.57 14.57 39.01 3.36
842 868 4.024387 CACGTCTTCCAAATTCGAAGGAAA 60.024 41.667 15.74 6.97 40.63 3.13
843 869 4.577283 ACGTCTTCCAAATTCGAAGGAAAA 59.423 37.500 15.74 3.28 40.63 2.29
844 870 5.240844 ACGTCTTCCAAATTCGAAGGAAAAT 59.759 36.000 15.74 2.77 40.63 1.82
845 871 5.795441 CGTCTTCCAAATTCGAAGGAAAATC 59.205 40.000 15.74 9.53 40.63 2.17
846 872 6.567701 CGTCTTCCAAATTCGAAGGAAAATCA 60.568 38.462 15.74 1.78 40.63 2.57
847 873 6.582672 GTCTTCCAAATTCGAAGGAAAATCAC 59.417 38.462 15.74 8.47 40.63 3.06
848 874 5.385509 TCCAAATTCGAAGGAAAATCACC 57.614 39.130 3.35 0.00 35.40 4.02
849 875 5.076873 TCCAAATTCGAAGGAAAATCACCT 58.923 37.500 3.35 0.00 39.69 4.00
850 876 5.183140 TCCAAATTCGAAGGAAAATCACCTC 59.817 40.000 3.35 0.00 36.67 3.85
851 877 5.048083 CCAAATTCGAAGGAAAATCACCTCA 60.048 40.000 3.35 0.00 36.67 3.86
852 878 6.446318 CAAATTCGAAGGAAAATCACCTCAA 58.554 36.000 3.35 0.00 36.67 3.02
853 879 6.648879 AATTCGAAGGAAAATCACCTCAAA 57.351 33.333 3.35 0.00 36.67 2.69
854 880 6.648879 ATTCGAAGGAAAATCACCTCAAAA 57.351 33.333 3.35 0.00 36.67 2.44
855 881 5.689383 TCGAAGGAAAATCACCTCAAAAG 57.311 39.130 0.00 0.00 36.67 2.27
858 884 6.320164 TCGAAGGAAAATCACCTCAAAAGAAA 59.680 34.615 0.00 0.00 36.67 2.52
879 905 8.183104 AGAAATCGAAGGAAAAGGAAATTTCT 57.817 30.769 17.42 0.00 38.92 2.52
939 968 1.486726 GGGTCATCCCGAGTTCTGAAT 59.513 52.381 0.00 0.00 44.74 2.57
975 1004 1.378124 CGAGTCCTCTCCTCGGTTCC 61.378 65.000 2.05 0.00 46.09 3.62
978 1007 2.038975 CCTCTCCTCGGTTCCCCA 59.961 66.667 0.00 0.00 0.00 4.96
988 1019 1.303091 CGGTTCCCCACAATCGTTCC 61.303 60.000 0.00 0.00 0.00 3.62
989 1020 0.037734 GGTTCCCCACAATCGTTCCT 59.962 55.000 0.00 0.00 0.00 3.36
1140 1172 3.710722 CCGCTGCTCCCAGGTCTT 61.711 66.667 0.00 0.00 39.54 3.01
1193 1225 1.333258 GCATATTCGAAGTCAAGCCGC 60.333 52.381 3.35 0.00 0.00 6.53
1194 1226 1.261619 CATATTCGAAGTCAAGCCGCC 59.738 52.381 3.35 0.00 0.00 6.13
1195 1227 0.804544 TATTCGAAGTCAAGCCGCCG 60.805 55.000 3.35 0.00 0.00 6.46
1356 1388 0.107459 GGCAGGAGAAGGTCACATCC 60.107 60.000 0.00 0.00 0.00 3.51
1358 1390 0.543749 CAGGAGAAGGTCACATCCCC 59.456 60.000 0.00 0.00 31.86 4.81
1359 1391 0.119155 AGGAGAAGGTCACATCCCCA 59.881 55.000 0.00 0.00 31.86 4.96
1393 1425 1.696097 CCTTAGGCTGGCCGTATGGT 61.696 60.000 5.93 0.00 41.95 3.55
1394 1426 0.180406 CTTAGGCTGGCCGTATGGTT 59.820 55.000 5.93 0.00 41.95 3.67
1399 1431 1.216977 CTGGCCGTATGGTTCACGA 59.783 57.895 2.17 0.00 41.91 4.35
1447 1481 1.746615 TTTCCTGCGCCATCTCAGC 60.747 57.895 4.18 0.00 0.00 4.26
1528 1562 1.021920 CGTCTCCTCTGCTGTCTCGA 61.022 60.000 0.00 0.00 0.00 4.04
1635 1669 1.608717 GGAGCATCTCCGGTGTGACT 61.609 60.000 0.00 0.00 41.08 3.41
1702 1736 4.609301 TGAGCCTGGCAGGTAAATTATTT 58.391 39.130 32.80 8.98 37.80 1.40
1729 1763 2.512485 CAGCATTGTCCTGTTGCAAA 57.488 45.000 0.00 0.00 38.84 3.68
1731 1765 2.734606 CAGCATTGTCCTGTTGCAAATG 59.265 45.455 0.00 0.08 38.84 2.32
1810 1844 4.336889 TCAGTTCTACACTTCCACTTGG 57.663 45.455 0.00 0.00 30.92 3.61
1882 1916 6.374417 ACCATTACGCCTATCATATCCTTT 57.626 37.500 0.00 0.00 0.00 3.11
1903 1937 7.942341 TCCTTTCACAATACAAGGTATCAAACT 59.058 33.333 0.00 0.00 38.62 2.66
1989 2023 8.990163 TCTAAATTGACTTCTTTTTGTACCCT 57.010 30.769 0.00 0.00 0.00 4.34
2095 2129 5.306678 TGGGTTCTGCATATTTGGAGTTTTT 59.693 36.000 4.70 0.00 41.68 1.94
2140 2174 6.926630 AGATCTTTGTCTTGTAACTCCTCT 57.073 37.500 0.00 0.00 0.00 3.69
2169 2203 5.949735 GTTCTCCTGAACAAGTTTTTGTCA 58.050 37.500 4.30 0.00 46.54 3.58
2170 2204 5.560966 TCTCCTGAACAAGTTTTTGTCAC 57.439 39.130 0.00 0.00 46.54 3.67
2171 2205 5.253330 TCTCCTGAACAAGTTTTTGTCACT 58.747 37.500 0.00 0.00 46.54 3.41
2172 2206 5.710099 TCTCCTGAACAAGTTTTTGTCACTT 59.290 36.000 0.00 0.00 46.54 3.16
2173 2207 6.882140 TCTCCTGAACAAGTTTTTGTCACTTA 59.118 34.615 0.00 0.00 46.54 2.24
2174 2208 7.392113 TCTCCTGAACAAGTTTTTGTCACTTAA 59.608 33.333 0.00 0.00 46.54 1.85
2215 2257 5.906772 AGGACCTCTAGTTTCAAAAGGAA 57.093 39.130 0.00 0.00 0.00 3.36
2218 2260 6.062749 GGACCTCTAGTTTCAAAAGGAAAGT 58.937 40.000 0.00 0.00 45.76 2.66
2240 2282 0.893447 AAAAGTACTCCCTCCGTCCG 59.107 55.000 0.00 0.00 0.00 4.79
2241 2283 0.969409 AAAGTACTCCCTCCGTCCGG 60.969 60.000 0.00 0.00 0.00 5.14
2242 2284 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
2243 2285 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2244 2286 0.754587 GTACTCCCTCCGTCCGGAAT 60.755 60.000 5.23 0.00 44.66 3.01
2245 2287 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
2246 2288 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
2247 2289 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
2248 2290 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
2249 2291 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
2250 2292 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2251 2293 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2252 2294 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2253 2295 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2254 2296 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
2255 2297 0.643820 GTCCGGAATTACTTGTCGCG 59.356 55.000 5.23 0.00 0.00 5.87
2256 2298 0.458889 TCCGGAATTACTTGTCGCGG 60.459 55.000 6.13 0.00 0.00 6.46
2257 2299 0.458889 CCGGAATTACTTGTCGCGGA 60.459 55.000 6.13 0.00 32.57 5.54
2258 2300 1.352114 CGGAATTACTTGTCGCGGAA 58.648 50.000 6.13 0.00 0.00 4.30
2259 2301 1.727880 CGGAATTACTTGTCGCGGAAA 59.272 47.619 6.13 0.00 0.00 3.13
2260 2302 2.350498 CGGAATTACTTGTCGCGGAAAT 59.650 45.455 6.13 0.00 0.00 2.17
2261 2303 3.680789 GGAATTACTTGTCGCGGAAATG 58.319 45.455 6.13 0.00 0.00 2.32
2262 2304 3.486875 GGAATTACTTGTCGCGGAAATGG 60.487 47.826 6.13 0.00 0.00 3.16
2263 2305 2.459060 TTACTTGTCGCGGAAATGGA 57.541 45.000 6.13 0.00 0.00 3.41
2264 2306 2.684001 TACTTGTCGCGGAAATGGAT 57.316 45.000 6.13 0.00 0.00 3.41
2265 2307 1.086696 ACTTGTCGCGGAAATGGATG 58.913 50.000 6.13 0.00 0.00 3.51
2266 2308 1.338674 ACTTGTCGCGGAAATGGATGA 60.339 47.619 6.13 0.00 0.00 2.92
2267 2309 1.737236 CTTGTCGCGGAAATGGATGAA 59.263 47.619 6.13 0.00 0.00 2.57
2268 2310 1.814793 TGTCGCGGAAATGGATGAAA 58.185 45.000 6.13 0.00 0.00 2.69
2269 2311 2.155279 TGTCGCGGAAATGGATGAAAA 58.845 42.857 6.13 0.00 0.00 2.29
2270 2312 2.752354 TGTCGCGGAAATGGATGAAAAT 59.248 40.909 6.13 0.00 0.00 1.82
2271 2313 3.108144 GTCGCGGAAATGGATGAAAATG 58.892 45.455 6.13 0.00 0.00 2.32
2272 2314 2.098934 TCGCGGAAATGGATGAAAATGG 59.901 45.455 6.13 0.00 0.00 3.16
2273 2315 2.098934 CGCGGAAATGGATGAAAATGGA 59.901 45.455 0.00 0.00 0.00 3.41
2274 2316 3.243501 CGCGGAAATGGATGAAAATGGAT 60.244 43.478 0.00 0.00 0.00 3.41
2275 2317 4.053295 GCGGAAATGGATGAAAATGGATG 58.947 43.478 0.00 0.00 0.00 3.51
2276 2318 4.441913 GCGGAAATGGATGAAAATGGATGT 60.442 41.667 0.00 0.00 0.00 3.06
2277 2319 5.221224 GCGGAAATGGATGAAAATGGATGTA 60.221 40.000 0.00 0.00 0.00 2.29
2278 2320 6.517194 GCGGAAATGGATGAAAATGGATGTAT 60.517 38.462 0.00 0.00 0.00 2.29
2279 2321 7.086376 CGGAAATGGATGAAAATGGATGTATC 58.914 38.462 0.00 0.00 0.00 2.24
2280 2322 7.040201 CGGAAATGGATGAAAATGGATGTATCT 60.040 37.037 0.00 0.00 0.00 1.98
2281 2323 9.300681 GGAAATGGATGAAAATGGATGTATCTA 57.699 33.333 0.00 0.00 0.00 1.98
2315 2357 6.426646 ACATCTAGGTACATCCATTTCTCC 57.573 41.667 0.00 0.00 39.02 3.71
2316 2358 5.011125 ACATCTAGGTACATCCATTTCTCCG 59.989 44.000 0.00 0.00 39.02 4.63
2317 2359 4.800023 TCTAGGTACATCCATTTCTCCGA 58.200 43.478 0.00 0.00 39.02 4.55
2318 2360 3.821421 AGGTACATCCATTTCTCCGAC 57.179 47.619 0.00 0.00 39.02 4.79
2319 2361 3.104512 AGGTACATCCATTTCTCCGACA 58.895 45.455 0.00 0.00 39.02 4.35
2320 2362 3.517901 AGGTACATCCATTTCTCCGACAA 59.482 43.478 0.00 0.00 39.02 3.18
2321 2363 3.871594 GGTACATCCATTTCTCCGACAAG 59.128 47.826 0.00 0.00 35.97 3.16
2322 2364 3.703001 ACATCCATTTCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
2323 2365 4.819105 ACATCCATTTCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
2324 2366 5.359194 ACATCCATTTCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
2325 2367 5.745227 ACATCCATTTCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
2326 2368 6.180472 ACATCCATTTCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
2327 2369 6.316390 ACATCCATTTCTCCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
2328 2370 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
2329 2371 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
2330 2372 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
2331 2373 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
2332 2374 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
2333 2375 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
2334 2376 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2335 2377 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2336 2378 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2337 2379 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2338 2380 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2351 2393 3.959449 GGACGGAGGGAGTAAAAGACTAT 59.041 47.826 0.00 0.00 39.06 2.12
2354 2396 6.097412 GGACGGAGGGAGTAAAAGACTATAAA 59.903 42.308 0.00 0.00 39.06 1.40
2374 2416 9.438291 CTATAAAACGAAAGCAATTCTGTATGG 57.562 33.333 0.00 0.00 35.79 2.74
2377 2419 5.957842 ACGAAAGCAATTCTGTATGGAAA 57.042 34.783 0.00 0.00 35.79 3.13
2485 2527 7.713942 ACCCTAGTTGTTAAACTGTACTTCAAG 59.286 37.037 1.42 0.00 46.30 3.02
2508 2550 3.425162 ACTAAAGGAGCCTTCACTTGG 57.575 47.619 1.62 0.00 34.84 3.61
2600 2642 3.943381 TCAAGCTGCAATCTCATTACCTG 59.057 43.478 1.02 0.00 0.00 4.00
2621 2663 3.006967 TGAGACTGGTTAGGCTTTGTCTC 59.993 47.826 18.85 18.85 44.30 3.36
2632 2674 1.401539 GCTTTGTCTCCCGCAAATCAC 60.402 52.381 0.00 0.00 35.60 3.06
2714 2756 2.092914 CCTAATGTCTCACCACTTCCCC 60.093 54.545 0.00 0.00 0.00 4.81
2780 2822 2.154462 CAGTCACCCATCCTTGTGAAC 58.846 52.381 0.00 0.00 42.67 3.18
2815 2857 1.463056 TCGTGCTTGGCGTGATAAAAG 59.537 47.619 0.00 0.00 0.00 2.27
2828 2870 4.554134 CGTGATAAAAGCATGCAGGATCAG 60.554 45.833 21.98 11.84 0.00 2.90
2877 2919 6.545666 TGTGAAAGAGGCTGATAAAAAGACAA 59.454 34.615 0.00 0.00 0.00 3.18
2956 2998 3.260632 GTGATTTACAGCCCCAACCAAAT 59.739 43.478 0.00 0.00 0.00 2.32
3060 3103 9.823647 GATGGTTCTTGAACTCTCTAAATGATA 57.176 33.333 12.44 0.00 0.00 2.15
3073 3116 7.161404 TCTCTAAATGATAACACTGTTGCAGT 58.839 34.615 4.57 0.00 46.51 4.40
3220 3266 2.290197 TGAGTCAATACATGCTGCCACA 60.290 45.455 0.00 0.00 0.00 4.17
3358 3416 4.619227 CTGGGGTGCCGTCGTTGT 62.619 66.667 0.00 0.00 0.00 3.32
3385 3466 1.453015 GCGAGAGAGAGAGCAGGGA 60.453 63.158 0.00 0.00 0.00 4.20
3464 3545 3.757270 TCTTGCTTAATCCCAAAACGGA 58.243 40.909 0.00 0.00 36.56 4.69
3561 3649 2.290323 CCACAACTAACTGGGCTAAGCT 60.290 50.000 0.00 0.00 0.00 3.74
3606 3694 2.906897 CCCGCCTGCACAAACAGT 60.907 61.111 0.00 0.00 35.83 3.55
3756 3850 4.295119 GTCGTGGGCAGACGTGGT 62.295 66.667 0.00 0.00 40.34 4.16
4227 4341 2.908015 GGAAGCGCTCCCATGGTA 59.092 61.111 8.27 0.00 38.44 3.25
4314 4430 3.822192 CGATCCAGGTGCGGTCGA 61.822 66.667 0.00 0.00 33.91 4.20
4405 4522 1.210931 CGTAGGTCGCGAACTCCAA 59.789 57.895 33.13 11.19 0.00 3.53
4691 4816 0.974383 ACGAAGACGACAGGGGAAAT 59.026 50.000 0.00 0.00 42.66 2.17
4963 5147 1.585006 CGAGGAACGTGTAGGTGCT 59.415 57.895 0.00 0.00 42.61 4.40
5009 5196 0.904865 TGGCAACCGTCATCTCCTCT 60.905 55.000 0.00 0.00 0.00 3.69
5350 7860 3.757270 TCTTGCTTAATCCCAAAACGGA 58.243 40.909 0.00 0.00 36.56 4.69
5469 7982 4.324254 CCCCTAATATGCCGGTCATAACAT 60.324 45.833 18.34 8.54 40.73 2.71
5473 7986 7.226720 CCCTAATATGCCGGTCATAACATATTC 59.773 40.741 19.62 0.00 42.06 1.75
5501 8014 4.894784 TCCTTCCGATCCATAATAAGTGC 58.105 43.478 0.00 0.00 0.00 4.40
5570 8084 2.930826 TATTTTGGATCGGAGGGAGC 57.069 50.000 0.00 0.00 0.00 4.70
5773 8287 6.096846 GCATATTTGTTCCACCTAATGAACCT 59.903 38.462 0.00 0.00 40.06 3.50
5803 8317 2.482721 CCAGTGGTTTTACGTGGATGTC 59.517 50.000 0.00 0.00 0.00 3.06
6086 8600 9.772973 TTATACCATTTTGCGTCAGTTATATCT 57.227 29.630 0.00 0.00 0.00 1.98
6117 8631 4.218635 TGCTGTCACTAGAACCTAGAAGTG 59.781 45.833 7.89 0.00 40.54 3.16
6170 8684 1.607148 TCTGGCTGTATCCGACATACG 59.393 52.381 0.00 0.00 37.45 3.06
6192 8706 4.685628 CGCAATTGCTTTGAGGTTTATTGT 59.314 37.500 26.86 0.00 37.53 2.71
6263 8777 7.291411 AGTTCAGTACCATACCATGATAGTC 57.709 40.000 0.00 0.00 0.00 2.59
6264 8778 5.959618 TCAGTACCATACCATGATAGTCG 57.040 43.478 0.00 0.00 0.00 4.18
6265 8779 5.627135 TCAGTACCATACCATGATAGTCGA 58.373 41.667 0.00 0.00 0.00 4.20
6266 8780 6.246163 TCAGTACCATACCATGATAGTCGAT 58.754 40.000 0.00 0.00 0.00 3.59
6267 8781 6.151144 TCAGTACCATACCATGATAGTCGATG 59.849 42.308 0.00 0.00 0.00 3.84
6268 8782 6.010850 AGTACCATACCATGATAGTCGATGT 58.989 40.000 0.00 0.00 0.00 3.06
6269 8783 5.392767 ACCATACCATGATAGTCGATGTC 57.607 43.478 0.00 0.00 0.00 3.06
6378 8936 7.616313 AGATTATTAGTAAGCTATGCACCTCC 58.384 38.462 0.00 0.00 34.93 4.30
6388 8946 3.132289 GCTATGCACCTCCAGTACAGTAA 59.868 47.826 0.00 0.00 0.00 2.24
6436 8996 5.693961 TGCCTATTGCTTGGATGAATCTAA 58.306 37.500 0.00 0.00 42.00 2.10
6478 9045 1.268539 CCGTCTTTGGAGTTGTTGCAC 60.269 52.381 0.00 0.00 0.00 4.57
6619 9609 6.765036 TGTTGGAGAAATCAGAGAATAGCATC 59.235 38.462 0.00 0.00 0.00 3.91
6621 9611 4.928615 GGAGAAATCAGAGAATAGCATCCG 59.071 45.833 0.00 0.00 0.00 4.18
6649 9643 8.607713 TGTTACATTCTTGAAATCCCTTAGGTA 58.392 33.333 0.00 0.00 0.00 3.08
6662 9656 6.150034 TCCCTTAGGTATCCCAGTCTATAC 57.850 45.833 0.00 0.00 0.00 1.47
6663 9657 5.016031 TCCCTTAGGTATCCCAGTCTATACC 59.984 48.000 0.00 0.00 45.38 2.73
6676 9670 5.337571 CCAGTCTATACCGGCAATATGTGAT 60.338 44.000 0.00 0.00 0.00 3.06
6677 9671 5.807520 CAGTCTATACCGGCAATATGTGATC 59.192 44.000 0.00 0.00 0.00 2.92
6678 9672 5.480422 AGTCTATACCGGCAATATGTGATCA 59.520 40.000 0.00 0.00 0.00 2.92
6679 9673 5.807520 GTCTATACCGGCAATATGTGATCAG 59.192 44.000 0.00 0.00 0.00 2.90
6680 9674 1.597742 ACCGGCAATATGTGATCAGC 58.402 50.000 0.00 0.00 0.00 4.26
6681 9675 1.141657 ACCGGCAATATGTGATCAGCT 59.858 47.619 0.00 0.00 0.00 4.24
6682 9676 1.802960 CCGGCAATATGTGATCAGCTC 59.197 52.381 0.00 0.00 0.00 4.09
6683 9677 2.486918 CGGCAATATGTGATCAGCTCA 58.513 47.619 0.00 0.00 0.00 4.26
6684 9678 2.479275 CGGCAATATGTGATCAGCTCAG 59.521 50.000 0.00 0.00 33.51 3.35
6685 9679 3.736720 GGCAATATGTGATCAGCTCAGA 58.263 45.455 0.00 0.00 33.51 3.27
6686 9680 4.132336 GGCAATATGTGATCAGCTCAGAA 58.868 43.478 0.00 0.00 33.51 3.02
6687 9681 4.213694 GGCAATATGTGATCAGCTCAGAAG 59.786 45.833 0.00 0.00 33.51 2.85
6688 9682 4.815308 GCAATATGTGATCAGCTCAGAAGT 59.185 41.667 0.00 0.00 33.51 3.01
6689 9683 5.296283 GCAATATGTGATCAGCTCAGAAGTT 59.704 40.000 0.00 0.00 33.51 2.66
6690 9684 6.511444 GCAATATGTGATCAGCTCAGAAGTTC 60.511 42.308 0.00 0.00 33.51 3.01
6691 9685 4.548451 ATGTGATCAGCTCAGAAGTTCA 57.452 40.909 5.50 0.00 33.51 3.18
6692 9686 4.548451 TGTGATCAGCTCAGAAGTTCAT 57.452 40.909 5.50 0.00 33.51 2.57
6701 9695 3.181526 GCTCAGAAGTTCATTAGTGCACG 60.182 47.826 12.01 0.00 0.00 5.34
6705 9699 1.710013 AGTTCATTAGTGCACGGACG 58.290 50.000 12.01 1.97 0.00 4.79
6713 9707 1.163420 AGTGCACGGACGATTTTGCA 61.163 50.000 12.01 0.85 42.60 4.08
6717 9711 1.665735 GCACGGACGATTTTGCACATT 60.666 47.619 0.00 0.00 34.97 2.71
6718 9712 2.241722 CACGGACGATTTTGCACATTC 58.758 47.619 0.00 0.00 0.00 2.67
6728 9722 6.183360 ACGATTTTGCACATTCCCATTCATAT 60.183 34.615 0.00 0.00 0.00 1.78
6762 9756 0.242017 GTTGATGGTGGCTGTCTTGC 59.758 55.000 0.00 0.00 0.00 4.01
6782 9776 4.854399 TGCGACCACTTTTATCTTTTGTG 58.146 39.130 0.00 0.00 0.00 3.33
6906 9902 1.418637 AGCCTTTCCTCCAACGTGTAA 59.581 47.619 0.00 0.00 0.00 2.41
6913 9909 6.875195 CCTTTCCTCCAACGTGTAACTATTTA 59.125 38.462 0.00 0.00 31.75 1.40
6914 9910 7.551617 CCTTTCCTCCAACGTGTAACTATTTAT 59.448 37.037 0.00 0.00 31.75 1.40
6915 9911 9.590451 CTTTCCTCCAACGTGTAACTATTTATA 57.410 33.333 0.00 0.00 31.75 0.98
6962 9958 1.289109 GAAGGAGCGTGCAAGCGTTA 61.289 55.000 18.93 0.00 43.00 3.18
7016 10012 6.704512 AACCATTGTTTTCGCATTTGATAC 57.295 33.333 0.00 0.00 0.00 2.24
7178 10180 1.814394 TGTTGGCAGAGACATTGATGC 59.186 47.619 0.00 0.00 37.95 3.91
7235 10239 0.825840 ATTTTCCACCACCACCACCG 60.826 55.000 0.00 0.00 0.00 4.94
7236 10240 4.572571 TTCCACCACCACCACCGC 62.573 66.667 0.00 0.00 0.00 5.68
7379 10386 1.198867 TGCCGAATCCATGTTCAAACG 59.801 47.619 0.00 0.00 0.00 3.60
7408 10415 3.467374 CTCTTGAGAGCCTAATGGTCC 57.533 52.381 0.00 0.00 42.62 4.46
7409 10416 3.037549 CTCTTGAGAGCCTAATGGTCCT 58.962 50.000 0.00 0.00 42.62 3.85
7410 10417 3.034635 TCTTGAGAGCCTAATGGTCCTC 58.965 50.000 0.00 0.00 42.62 3.71
7411 10418 2.856760 TGAGAGCCTAATGGTCCTCT 57.143 50.000 0.00 0.00 42.62 3.69
7465 13212 1.949525 TGCTGTTTTCTCTGCTTGTCC 59.050 47.619 0.00 0.00 34.27 4.02
7494 13241 2.963928 CTTGGCTGCTGGTGGTGTCA 62.964 60.000 0.00 0.00 0.00 3.58
7530 13277 1.079127 CCTCCGGCGATGTTCTTGT 60.079 57.895 9.30 0.00 0.00 3.16
7553 13300 1.207488 AGGCAGGTGTGAATAGGGCA 61.207 55.000 0.00 0.00 0.00 5.36
7783 13563 1.209504 AGCTGCTTAAATGGCCGTCTA 59.790 47.619 0.00 0.00 0.00 2.59
7813 13593 1.785430 GTACAGCCGCGCTAATCTTAC 59.215 52.381 5.56 0.00 36.40 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.492011 GCACTTCAAAGGCAACAAATCTG 59.508 43.478 0.00 0.00 41.41 2.90
51 52 2.420058 ACAGCCCCAATGCTAAGTAC 57.580 50.000 0.00 0.00 40.32 2.73
255 262 2.229543 TGCACAAAACCATGCAGAGATC 59.770 45.455 0.00 0.00 46.63 2.75
280 288 5.122239 TCAACATTTCATCAGATTGACCGAC 59.878 40.000 0.00 0.00 0.00 4.79
343 354 4.743705 TTAAGGAACCCAACCCATGTTA 57.256 40.909 0.00 0.00 32.09 2.41
407 422 7.886629 ATACTGCCTGTATGATGTTTCAAAT 57.113 32.000 0.00 0.00 40.12 2.32
426 441 8.450578 TGCAAGGACTCCAAATTTATATACTG 57.549 34.615 0.00 0.00 0.00 2.74
428 443 7.809806 GCATGCAAGGACTCCAAATTTATATAC 59.190 37.037 14.21 0.00 0.00 1.47
429 444 7.725397 AGCATGCAAGGACTCCAAATTTATATA 59.275 33.333 21.98 0.00 0.00 0.86
430 445 6.552350 AGCATGCAAGGACTCCAAATTTATAT 59.448 34.615 21.98 0.00 0.00 0.86
470 485 7.297391 GTTTTCACAGCACAAAATGTTTCTTT 58.703 30.769 0.00 0.00 0.00 2.52
611 627 4.082081 TGAATGATGGGAAAATGTCAGCAC 60.082 41.667 0.00 0.00 29.43 4.40
722 748 4.497291 AATTGCAATCAAAGATGCCCAT 57.503 36.364 13.38 0.00 41.87 4.00
768 794 1.529010 TGGCCAAGTGGTCAGCTTG 60.529 57.895 0.61 0.00 46.36 4.01
769 795 2.926250 TGGCCAAGTGGTCAGCTT 59.074 55.556 0.61 0.00 46.36 3.74
774 800 0.890683 CCAGATTTGGCCAAGTGGTC 59.109 55.000 25.27 18.87 41.09 4.02
775 801 0.542702 CCCAGATTTGGCCAAGTGGT 60.543 55.000 28.55 15.37 43.58 4.16
776 802 1.891722 GCCCAGATTTGGCCAAGTGG 61.892 60.000 26.09 26.09 43.58 4.00
777 803 1.593265 GCCCAGATTTGGCCAAGTG 59.407 57.895 19.46 16.56 43.58 3.16
778 804 4.118584 GCCCAGATTTGGCCAAGT 57.881 55.556 19.48 16.87 43.58 3.16
784 810 2.133281 TGACAGATGCCCAGATTTGG 57.867 50.000 0.00 0.00 44.60 3.28
785 811 4.021719 AGTTTTGACAGATGCCCAGATTTG 60.022 41.667 0.00 0.00 0.00 2.32
786 812 4.154942 AGTTTTGACAGATGCCCAGATTT 58.845 39.130 0.00 0.00 0.00 2.17
787 813 3.771216 AGTTTTGACAGATGCCCAGATT 58.229 40.909 0.00 0.00 0.00 2.40
788 814 3.446442 AGTTTTGACAGATGCCCAGAT 57.554 42.857 0.00 0.00 0.00 2.90
789 815 2.957402 AGTTTTGACAGATGCCCAGA 57.043 45.000 0.00 0.00 0.00 3.86
830 856 6.648879 TTTGAGGTGATTTTCCTTCGAATT 57.351 33.333 0.00 0.00 35.20 2.17
831 857 6.490040 TCTTTTGAGGTGATTTTCCTTCGAAT 59.510 34.615 0.00 0.00 35.20 3.34
832 858 5.825679 TCTTTTGAGGTGATTTTCCTTCGAA 59.174 36.000 0.00 0.00 35.20 3.71
833 859 5.373222 TCTTTTGAGGTGATTTTCCTTCGA 58.627 37.500 0.00 0.00 35.20 3.71
834 860 5.689383 TCTTTTGAGGTGATTTTCCTTCG 57.311 39.130 0.00 0.00 35.20 3.79
835 861 7.327032 CGATTTCTTTTGAGGTGATTTTCCTTC 59.673 37.037 0.00 0.00 35.20 3.46
836 862 7.014230 TCGATTTCTTTTGAGGTGATTTTCCTT 59.986 33.333 0.00 0.00 35.20 3.36
837 863 6.490040 TCGATTTCTTTTGAGGTGATTTTCCT 59.510 34.615 0.00 0.00 38.09 3.36
838 864 6.677913 TCGATTTCTTTTGAGGTGATTTTCC 58.322 36.000 0.00 0.00 0.00 3.13
839 865 7.327032 CCTTCGATTTCTTTTGAGGTGATTTTC 59.673 37.037 0.00 0.00 0.00 2.29
840 866 7.014230 TCCTTCGATTTCTTTTGAGGTGATTTT 59.986 33.333 0.00 0.00 0.00 1.82
841 867 6.490040 TCCTTCGATTTCTTTTGAGGTGATTT 59.510 34.615 0.00 0.00 0.00 2.17
842 868 6.003950 TCCTTCGATTTCTTTTGAGGTGATT 58.996 36.000 0.00 0.00 0.00 2.57
843 869 5.560724 TCCTTCGATTTCTTTTGAGGTGAT 58.439 37.500 0.00 0.00 0.00 3.06
844 870 4.968259 TCCTTCGATTTCTTTTGAGGTGA 58.032 39.130 0.00 0.00 0.00 4.02
845 871 5.689383 TTCCTTCGATTTCTTTTGAGGTG 57.311 39.130 0.00 0.00 0.00 4.00
846 872 6.239036 CCTTTTCCTTCGATTTCTTTTGAGGT 60.239 38.462 0.00 0.00 0.00 3.85
847 873 6.016276 TCCTTTTCCTTCGATTTCTTTTGAGG 60.016 38.462 0.00 0.00 0.00 3.86
848 874 6.970484 TCCTTTTCCTTCGATTTCTTTTGAG 58.030 36.000 0.00 0.00 0.00 3.02
849 875 6.952773 TCCTTTTCCTTCGATTTCTTTTGA 57.047 33.333 0.00 0.00 0.00 2.69
850 876 8.593492 ATTTCCTTTTCCTTCGATTTCTTTTG 57.407 30.769 0.00 0.00 0.00 2.44
851 877 9.613428 AAATTTCCTTTTCCTTCGATTTCTTTT 57.387 25.926 0.00 0.00 0.00 2.27
852 878 9.261180 GAAATTTCCTTTTCCTTCGATTTCTTT 57.739 29.630 6.95 0.00 32.42 2.52
853 879 8.642432 AGAAATTTCCTTTTCCTTCGATTTCTT 58.358 29.630 14.61 0.00 38.65 2.52
854 880 8.183104 AGAAATTTCCTTTTCCTTCGATTTCT 57.817 30.769 14.61 0.00 37.61 2.52
855 881 8.818141 AAGAAATTTCCTTTTCCTTCGATTTC 57.182 30.769 14.61 0.00 36.47 2.17
858 884 9.045223 CAAAAAGAAATTTCCTTTTCCTTCGAT 57.955 29.630 19.86 6.43 41.42 3.59
975 1004 1.473434 GGCTCTAGGAACGATTGTGGG 60.473 57.143 0.00 0.00 0.00 4.61
978 1007 3.244422 TGTTTGGCTCTAGGAACGATTGT 60.244 43.478 0.00 0.00 0.00 2.71
1127 1159 3.706373 GGCGAAGACCTGGGAGCA 61.706 66.667 0.00 0.00 0.00 4.26
1213 1245 6.149474 CGAGGAAACAAATCTGGTTAGAATGT 59.851 38.462 0.00 0.00 38.15 2.71
1358 1390 4.394712 GGAGGGGGTGCGTGAGTG 62.395 72.222 0.00 0.00 0.00 3.51
1359 1391 2.741878 TAAGGAGGGGGTGCGTGAGT 62.742 60.000 0.00 0.00 0.00 3.41
1393 1425 4.018779 AGGATTTCCAGGGTTAATCGTGAA 60.019 41.667 9.97 0.00 38.89 3.18
1394 1426 3.521937 AGGATTTCCAGGGTTAATCGTGA 59.478 43.478 9.97 0.00 38.89 4.35
1399 1431 4.790790 AGAGTGAGGATTTCCAGGGTTAAT 59.209 41.667 0.00 0.00 38.89 1.40
1447 1481 3.568007 GTCCTGTACTCCAGCATCTCTAG 59.432 52.174 0.00 0.00 40.06 2.43
1528 1562 2.267006 CAGCACAGCCGGATCACT 59.733 61.111 5.05 0.00 0.00 3.41
1635 1669 7.502226 GGAGTGATCACATAATACCCATTTTCA 59.498 37.037 27.02 0.00 0.00 2.69
1702 1736 2.694628 ACAGGACAATGCTGCTTCAAAA 59.305 40.909 0.00 0.00 39.63 2.44
1719 1753 5.695851 ACTAGAGTTTCATTTGCAACAGG 57.304 39.130 0.00 0.00 0.00 4.00
1810 1844 6.018262 GGTAAAACTGGAAATGGCTTTTTGTC 60.018 38.462 0.00 0.00 0.00 3.18
1882 1916 8.100164 TGATGAGTTTGATACCTTGTATTGTGA 58.900 33.333 0.00 0.00 0.00 3.58
1903 1937 7.286546 TCAGGTTGTGTTTTTATTCCTTGATGA 59.713 33.333 0.00 0.00 0.00 2.92
1989 2023 5.798125 TTTCCCAAAGATAACATGTGCAA 57.202 34.783 0.00 0.00 0.00 4.08
2095 2129 2.928801 TGCTTCACTTCTAGGCACAA 57.071 45.000 0.00 0.00 0.00 3.33
2097 2131 4.759782 TCTAATGCTTCACTTCTAGGCAC 58.240 43.478 0.00 0.00 35.72 5.01
2169 2203 9.853177 CCTTTCCTCATGGATTACTAATTAAGT 57.147 33.333 0.00 0.00 42.81 2.24
2171 2205 9.847224 GTCCTTTCCTCATGGATTACTAATTAA 57.153 33.333 0.00 0.00 42.81 1.40
2172 2206 8.437575 GGTCCTTTCCTCATGGATTACTAATTA 58.562 37.037 0.00 0.00 42.81 1.40
2173 2207 7.129504 AGGTCCTTTCCTCATGGATTACTAATT 59.870 37.037 0.00 0.00 42.81 1.40
2174 2208 6.621514 AGGTCCTTTCCTCATGGATTACTAAT 59.378 38.462 0.00 0.00 42.81 1.73
2224 2266 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
2225 2267 0.754587 ATTCCGGACGGAGGGAGTAC 60.755 60.000 13.64 0.00 46.06 2.73
2226 2268 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2227 2269 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
2228 2270 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2229 2271 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
2230 2272 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2231 2273 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2232 2274 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2233 2275 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2234 2276 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2235 2277 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
2236 2278 0.643820 CGCGACAAGTAATTCCGGAC 59.356 55.000 1.83 0.00 0.00 4.79
2237 2279 0.458889 CCGCGACAAGTAATTCCGGA 60.459 55.000 8.23 0.00 36.55 5.14
2238 2280 0.458889 TCCGCGACAAGTAATTCCGG 60.459 55.000 8.23 0.00 35.83 5.14
2239 2281 1.352114 TTCCGCGACAAGTAATTCCG 58.648 50.000 8.23 0.00 0.00 4.30
2240 2282 3.486875 CCATTTCCGCGACAAGTAATTCC 60.487 47.826 8.23 0.00 0.00 3.01
2241 2283 3.372822 TCCATTTCCGCGACAAGTAATTC 59.627 43.478 8.23 0.00 0.00 2.17
2242 2284 3.340034 TCCATTTCCGCGACAAGTAATT 58.660 40.909 8.23 0.00 0.00 1.40
2243 2285 2.980568 TCCATTTCCGCGACAAGTAAT 58.019 42.857 8.23 0.00 0.00 1.89
2244 2286 2.459060 TCCATTTCCGCGACAAGTAA 57.541 45.000 8.23 0.00 0.00 2.24
2245 2287 2.093921 TCATCCATTTCCGCGACAAGTA 60.094 45.455 8.23 0.00 0.00 2.24
2246 2288 1.086696 CATCCATTTCCGCGACAAGT 58.913 50.000 8.23 0.00 0.00 3.16
2247 2289 1.368641 TCATCCATTTCCGCGACAAG 58.631 50.000 8.23 0.00 0.00 3.16
2248 2290 1.814793 TTCATCCATTTCCGCGACAA 58.185 45.000 8.23 0.00 0.00 3.18
2249 2291 1.814793 TTTCATCCATTTCCGCGACA 58.185 45.000 8.23 0.00 0.00 4.35
2250 2292 2.911819 TTTTCATCCATTTCCGCGAC 57.088 45.000 8.23 0.00 0.00 5.19
2251 2293 2.098934 CCATTTTCATCCATTTCCGCGA 59.901 45.455 8.23 0.00 0.00 5.87
2252 2294 2.098934 TCCATTTTCATCCATTTCCGCG 59.901 45.455 0.00 0.00 0.00 6.46
2253 2295 3.799281 TCCATTTTCATCCATTTCCGC 57.201 42.857 0.00 0.00 0.00 5.54
2254 2296 5.266733 ACATCCATTTTCATCCATTTCCG 57.733 39.130 0.00 0.00 0.00 4.30
2255 2297 8.186709 AGATACATCCATTTTCATCCATTTCC 57.813 34.615 0.00 0.00 0.00 3.13
2289 2331 8.598041 GGAGAAATGGATGTACCTAGATGTATT 58.402 37.037 0.00 0.00 39.86 1.89
2290 2332 7.093727 CGGAGAAATGGATGTACCTAGATGTAT 60.094 40.741 0.00 0.00 39.86 2.29
2291 2333 6.208797 CGGAGAAATGGATGTACCTAGATGTA 59.791 42.308 0.00 0.00 39.86 2.29
2292 2334 5.011125 CGGAGAAATGGATGTACCTAGATGT 59.989 44.000 0.00 0.00 39.86 3.06
2293 2335 5.243954 TCGGAGAAATGGATGTACCTAGATG 59.756 44.000 0.00 0.00 39.86 2.90
2294 2336 5.244178 GTCGGAGAAATGGATGTACCTAGAT 59.756 44.000 0.00 0.00 39.69 1.98
2295 2337 4.583489 GTCGGAGAAATGGATGTACCTAGA 59.417 45.833 0.00 0.00 39.69 2.43
2296 2338 4.341235 TGTCGGAGAAATGGATGTACCTAG 59.659 45.833 0.00 0.00 39.69 3.02
2297 2339 4.283337 TGTCGGAGAAATGGATGTACCTA 58.717 43.478 0.00 0.00 39.69 3.08
2298 2340 3.104512 TGTCGGAGAAATGGATGTACCT 58.895 45.455 0.00 0.00 39.69 3.08
2299 2341 3.536956 TGTCGGAGAAATGGATGTACC 57.463 47.619 0.00 0.00 39.69 3.34
2300 2342 4.504858 ACTTGTCGGAGAAATGGATGTAC 58.495 43.478 0.00 0.00 39.69 2.90
2301 2343 4.819105 ACTTGTCGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 39.69 2.29
2302 2344 3.703001 ACTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
2303 2345 6.238484 GGAAATACTTGTCGGAGAAATGGATG 60.238 42.308 0.00 0.00 39.69 3.51
2304 2346 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
2305 2347 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
2306 2348 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
2307 2349 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
2308 2350 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
2309 2351 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
2310 2352 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
2311 2353 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
2312 2354 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
2313 2355 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
2314 2356 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
2315 2357 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2316 2358 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2317 2359 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2318 2360 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2319 2361 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2320 2362 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2321 2363 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2322 2364 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2323 2365 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2324 2366 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
2325 2367 0.251742 TTTACTCCCTCCGTCCGGAA 60.252 55.000 5.23 0.00 44.66 4.30
2326 2368 0.251742 TTTTACTCCCTCCGTCCGGA 60.252 55.000 0.00 0.00 42.90 5.14
2327 2369 0.175073 CTTTTACTCCCTCCGTCCGG 59.825 60.000 0.00 0.00 0.00 5.14
2328 2370 1.135170 GTCTTTTACTCCCTCCGTCCG 60.135 57.143 0.00 0.00 0.00 4.79
2329 2371 2.177734 AGTCTTTTACTCCCTCCGTCC 58.822 52.381 0.00 0.00 30.33 4.79
2330 2372 6.705863 TTATAGTCTTTTACTCCCTCCGTC 57.294 41.667 0.00 0.00 39.80 4.79
2331 2373 7.326454 GTTTTATAGTCTTTTACTCCCTCCGT 58.674 38.462 0.00 0.00 39.80 4.69
2332 2374 6.474751 CGTTTTATAGTCTTTTACTCCCTCCG 59.525 42.308 0.00 0.00 39.80 4.63
2333 2375 7.550712 TCGTTTTATAGTCTTTTACTCCCTCC 58.449 38.462 0.00 0.00 39.80 4.30
2334 2376 8.992835 TTCGTTTTATAGTCTTTTACTCCCTC 57.007 34.615 0.00 0.00 39.80 4.30
2335 2377 9.433153 CTTTCGTTTTATAGTCTTTTACTCCCT 57.567 33.333 0.00 0.00 39.80 4.20
2336 2378 8.173775 GCTTTCGTTTTATAGTCTTTTACTCCC 58.826 37.037 0.00 0.00 39.80 4.30
2337 2379 8.715088 TGCTTTCGTTTTATAGTCTTTTACTCC 58.285 33.333 0.00 0.00 39.80 3.85
2351 2393 7.441890 TCCATACAGAATTGCTTTCGTTTTA 57.558 32.000 0.00 0.00 39.46 1.52
2354 2396 5.957842 TTCCATACAGAATTGCTTTCGTT 57.042 34.783 0.00 0.00 39.46 3.85
2441 2483 6.734281 ACTAGGGTTGGTCCTTTAATAGACTT 59.266 38.462 0.00 0.00 38.30 3.01
2485 2527 5.119694 CCAAGTGAAGGCTCCTTTAGTATC 58.880 45.833 2.27 0.00 36.26 2.24
2508 2550 2.200170 ATTTGGCAGAAGCGAACGCC 62.200 55.000 15.44 3.62 45.11 5.68
2600 2642 3.591023 GAGACAAAGCCTAACCAGTCTC 58.409 50.000 0.00 0.00 43.27 3.36
2610 2652 0.251341 ATTTGCGGGAGACAAAGCCT 60.251 50.000 0.00 0.00 38.52 4.58
2621 2663 0.801872 TTGTGATCGTGATTTGCGGG 59.198 50.000 0.00 0.00 0.00 6.13
2780 2822 0.176680 CACGAGGAATCCACCCTCTG 59.823 60.000 0.61 0.00 46.15 3.35
2815 2857 1.153025 TCCTGCTGATCCTGCATGC 60.153 57.895 11.82 11.82 37.65 4.06
2828 2870 1.692411 AAGTTTCACCAAGGTCCTGC 58.308 50.000 0.00 0.00 0.00 4.85
2877 2919 6.800072 TTTCCACCAAGTACCTTTTTCATT 57.200 33.333 0.00 0.00 0.00 2.57
2956 2998 8.625786 ATGAGCAAACTATTGATATGCATACA 57.374 30.769 8.99 6.72 38.94 2.29
3032 3075 5.977489 TTAGAGAGTTCAAGAACCATCGA 57.023 39.130 9.20 0.00 42.06 3.59
3060 3103 4.037923 CCTTTAATGGACTGCAACAGTGTT 59.962 41.667 4.71 1.64 45.44 3.32
3220 3266 8.519526 CATGGTGGTTTTTATATGTGTACAAGT 58.480 33.333 0.00 0.00 0.00 3.16
3258 3304 1.740285 CTGGTAGGGATCCGGTTCG 59.260 63.158 5.45 0.00 0.00 3.95
3385 3466 3.152400 CCTAACCCTAGCCGCCGT 61.152 66.667 0.00 0.00 0.00 5.68
3561 3649 5.483937 AGATGTTATGACCGGCATATTAGGA 59.516 40.000 16.09 2.54 39.15 2.94
3756 3850 2.514592 CGAGCCCTACGTACCGGA 60.515 66.667 9.46 0.00 0.00 5.14
3877 3973 4.316823 AGGGTCGGCCTGTCCAGA 62.317 66.667 5.77 0.00 34.45 3.86
3988 4084 1.029947 CCTCCAAACGGCCATGTACC 61.030 60.000 2.24 0.00 0.00 3.34
4001 4097 2.843545 GGGCCACAGAACCTCCAA 59.156 61.111 4.39 0.00 0.00 3.53
4405 4522 1.517832 CCGCCGAGATTCTCCAAGT 59.482 57.895 8.09 0.00 0.00 3.16
4527 4644 4.753877 CTTCGCCAGCGTCGACGA 62.754 66.667 39.74 16.52 43.02 4.20
4691 4816 2.687200 CCCATCCACCAGGTCCGA 60.687 66.667 0.00 0.00 35.89 4.55
5009 5196 3.307906 CCCGTCGTCTTCACCCCA 61.308 66.667 0.00 0.00 0.00 4.96
5091 7559 4.335647 CCTCCTGCTGCCAACCGT 62.336 66.667 0.00 0.00 0.00 4.83
5120 7588 1.227674 GATCATGTCCTCACCGCCC 60.228 63.158 0.00 0.00 0.00 6.13
5469 7982 6.935240 ATGGATCGGAAGGAGTAATGAATA 57.065 37.500 0.00 0.00 0.00 1.75
5473 7986 8.314751 ACTTATTATGGATCGGAAGGAGTAATG 58.685 37.037 0.00 0.00 0.00 1.90
5501 8014 4.497473 TCAACCTTAGTTCAAAATGCGG 57.503 40.909 0.00 0.00 32.45 5.69
5544 8058 3.555956 CCTCCGATCCAAAATAAGTGTCG 59.444 47.826 0.00 0.00 0.00 4.35
5773 8287 4.255301 CGTAAAACCACTGGCCATTACTA 58.745 43.478 18.04 0.55 0.00 1.82
5803 8317 2.491152 GCACGTGCAATCATGGGG 59.509 61.111 34.52 0.00 41.59 4.96
6034 8548 9.781425 ATACAATATCCCTGATTAGATGACTCT 57.219 33.333 0.00 0.00 35.39 3.24
6073 8587 4.260784 GCAGCCCAAAAGATATAACTGACG 60.261 45.833 0.00 0.00 0.00 4.35
6086 8600 1.419762 TCTAGTGACAGCAGCCCAAAA 59.580 47.619 0.00 0.00 0.00 2.44
6117 8631 6.831769 TCGAATTTTCTATGAGAAGCACAAC 58.168 36.000 0.00 0.00 35.37 3.32
6170 8684 6.183360 GCTACAATAAACCTCAAAGCAATTGC 60.183 38.462 23.05 23.05 38.98 3.56
6238 8752 7.470147 CGACTATCATGGTATGGTACTGAACTT 60.470 40.741 0.00 0.00 0.00 2.66
6263 8777 5.819270 CATATGTGCTTAGACAGACATCG 57.181 43.478 0.00 0.00 31.56 3.84
6286 8842 2.937591 ACTGATTTTGCATGTTCAGCG 58.062 42.857 16.06 1.08 39.33 5.18
6378 8936 8.346300 ACTCATCATTCGAGTATTACTGTACTG 58.654 37.037 0.00 0.00 41.91 2.74
6388 8946 7.531857 AGATACCAACTCATCATTCGAGTAT 57.468 36.000 0.00 0.00 42.90 2.12
6436 8996 5.126067 GGTTACCAGATGCATGATACAAGT 58.874 41.667 2.46 0.00 0.00 3.16
6478 9045 1.290203 CTATGGCTGCAAGTACCACG 58.710 55.000 0.50 0.00 35.99 4.94
6507 9074 5.182950 CCATAATTCTGTAAGTTGGCACACA 59.817 40.000 0.00 0.00 39.29 3.72
6619 9609 4.142469 GGGATTTCAAGAATGTAACACCGG 60.142 45.833 0.00 0.00 0.00 5.28
6621 9611 6.590234 AAGGGATTTCAAGAATGTAACACC 57.410 37.500 0.00 0.00 0.00 4.16
6662 9656 1.802960 GAGCTGATCACATATTGCCGG 59.197 52.381 0.00 0.00 0.00 6.13
6663 9657 2.479275 CTGAGCTGATCACATATTGCCG 59.521 50.000 0.00 0.00 33.22 5.69
6664 9658 3.736720 TCTGAGCTGATCACATATTGCC 58.263 45.455 0.00 0.00 33.22 4.52
6665 9659 4.815308 ACTTCTGAGCTGATCACATATTGC 59.185 41.667 0.00 0.00 33.22 3.56
6676 9670 4.248859 GCACTAATGAACTTCTGAGCTGA 58.751 43.478 0.00 0.00 0.00 4.26
6677 9671 3.999001 TGCACTAATGAACTTCTGAGCTG 59.001 43.478 0.00 0.00 0.00 4.24
6678 9672 3.999663 GTGCACTAATGAACTTCTGAGCT 59.000 43.478 10.32 0.00 30.62 4.09
6679 9673 3.181526 CGTGCACTAATGAACTTCTGAGC 60.182 47.826 16.19 0.00 31.17 4.26
6680 9674 3.369147 CCGTGCACTAATGAACTTCTGAG 59.631 47.826 16.19 0.00 31.17 3.35
6681 9675 3.006430 TCCGTGCACTAATGAACTTCTGA 59.994 43.478 16.19 0.00 31.17 3.27
6682 9676 3.123621 GTCCGTGCACTAATGAACTTCTG 59.876 47.826 16.19 0.00 31.17 3.02
6683 9677 3.326747 GTCCGTGCACTAATGAACTTCT 58.673 45.455 16.19 0.00 31.17 2.85
6684 9678 2.092211 CGTCCGTGCACTAATGAACTTC 59.908 50.000 16.19 0.00 31.17 3.01
6685 9679 2.066262 CGTCCGTGCACTAATGAACTT 58.934 47.619 16.19 0.00 31.17 2.66
6686 9680 1.271379 TCGTCCGTGCACTAATGAACT 59.729 47.619 16.19 0.00 31.17 3.01
6687 9681 1.705256 TCGTCCGTGCACTAATGAAC 58.295 50.000 16.19 3.02 0.00 3.18
6688 9682 2.665649 ATCGTCCGTGCACTAATGAA 57.334 45.000 16.19 0.00 0.00 2.57
6689 9683 2.665649 AATCGTCCGTGCACTAATGA 57.334 45.000 16.19 13.29 0.00 2.57
6690 9684 3.416277 CAAAATCGTCCGTGCACTAATG 58.584 45.455 16.19 8.16 0.00 1.90
6691 9685 2.159572 GCAAAATCGTCCGTGCACTAAT 60.160 45.455 16.19 0.00 36.97 1.73
6692 9686 1.195900 GCAAAATCGTCCGTGCACTAA 59.804 47.619 16.19 0.00 36.97 2.24
6701 9695 1.543802 TGGGAATGTGCAAAATCGTCC 59.456 47.619 0.00 0.00 0.00 4.79
6705 9699 8.441312 AAATATGAATGGGAATGTGCAAAATC 57.559 30.769 0.00 0.00 0.00 2.17
6728 9722 7.546358 CCACCATCAACAGCATAATTAAGAAA 58.454 34.615 0.00 0.00 0.00 2.52
6762 9756 7.749126 GGTAATCACAAAAGATAAAAGTGGTCG 59.251 37.037 0.00 0.00 0.00 4.79
6782 9776 4.870991 GCAGAAAGAGTGTACCTGGTAATC 59.129 45.833 8.40 7.42 0.00 1.75
6913 9909 7.941238 AGCACCATGAACTTAAGCTTCATATAT 59.059 33.333 22.04 13.48 36.42 0.86
6914 9910 7.282585 AGCACCATGAACTTAAGCTTCATATA 58.717 34.615 22.04 5.88 36.42 0.86
6915 9911 6.125029 AGCACCATGAACTTAAGCTTCATAT 58.875 36.000 22.04 15.25 36.42 1.78
6925 9921 4.041567 TCCTTCTGAAGCACCATGAACTTA 59.958 41.667 11.93 0.00 0.00 2.24
6935 9931 1.905922 GCACGCTCCTTCTGAAGCAC 61.906 60.000 11.93 2.68 0.00 4.40
6962 9958 1.399714 TCGCCGGAGATTACAGATGT 58.600 50.000 5.05 0.00 0.00 3.06
7235 10239 1.003718 AGCCGTCTTGGTAAGTGGC 60.004 57.895 14.99 14.99 45.22 5.01
7236 10240 1.298859 GCAGCCGTCTTGGTAAGTGG 61.299 60.000 0.00 0.00 41.21 4.00
7345 10352 1.100463 TCGGCAAAGCACTGCAGAAA 61.100 50.000 23.35 0.00 42.42 2.52
7379 10386 2.458162 CTCTCAAGAGCTGTGCTGC 58.542 57.895 0.00 0.00 39.88 5.25
7403 10410 4.601084 CCAAGAGTAGAGTAAGAGGACCA 58.399 47.826 0.00 0.00 0.00 4.02
7405 10412 3.382227 GGCCAAGAGTAGAGTAAGAGGAC 59.618 52.174 0.00 0.00 0.00 3.85
7406 10413 3.269906 AGGCCAAGAGTAGAGTAAGAGGA 59.730 47.826 5.01 0.00 0.00 3.71
7407 10414 3.634910 GAGGCCAAGAGTAGAGTAAGAGG 59.365 52.174 5.01 0.00 0.00 3.69
7408 10415 3.634910 GGAGGCCAAGAGTAGAGTAAGAG 59.365 52.174 5.01 0.00 0.00 2.85
7409 10416 3.011369 TGGAGGCCAAGAGTAGAGTAAGA 59.989 47.826 5.01 0.00 0.00 2.10
7410 10417 3.366396 TGGAGGCCAAGAGTAGAGTAAG 58.634 50.000 5.01 0.00 0.00 2.34
7411 10418 3.245658 ACTGGAGGCCAAGAGTAGAGTAA 60.246 47.826 5.01 0.00 30.80 2.24
7465 13212 0.107606 AGCAGCCAAGAGATGCAGAG 60.108 55.000 5.66 0.00 42.45 3.35
7494 13241 0.321996 GGAGACGCAGAGGGAAAAGT 59.678 55.000 0.00 0.00 0.00 2.66
7530 13277 2.705658 CCCTATTCACACCTGCCTGATA 59.294 50.000 0.00 0.00 0.00 2.15
7760 13540 1.892338 GGCCATTTAAGCAGCTGCA 59.108 52.632 38.24 20.06 45.16 4.41
7763 13543 0.035056 AGACGGCCATTTAAGCAGCT 60.035 50.000 2.24 0.00 0.00 4.24
7813 13593 0.179073 ATTGATTGGGCGTCCTCTCG 60.179 55.000 7.97 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.