Multiple sequence alignment - TraesCS4B01G260100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G260100 chr4B 100.000 5434 0 0 1 5434 527003905 527009338 0.000000e+00 10035
1 TraesCS4B01G260100 chr4B 84.053 301 23 12 167 454 636234590 636234302 3.230000e-67 267
2 TraesCS4B01G260100 chr4B 83.279 305 23 14 165 454 365509576 365509285 6.980000e-64 255
3 TraesCS4B01G260100 chr4B 82.781 302 25 12 167 454 226623236 226623524 1.510000e-60 244
4 TraesCS4B01G260100 chr4B 90.000 100 6 3 1982 2080 392040326 392040422 5.710000e-25 126
5 TraesCS4B01G260100 chr4D 94.118 2006 74 17 1 1985 428965398 428967380 0.000000e+00 3011
6 TraesCS4B01G260100 chr4D 99.106 1231 11 0 2079 3309 428967379 428968609 0.000000e+00 2213
7 TraesCS4B01G260100 chr4D 87.754 1674 100 45 3797 5434 428969088 428970692 0.000000e+00 1858
8 TraesCS4B01G260100 chr4D 96.107 488 14 3 3310 3792 428968708 428969195 0.000000e+00 791
9 TraesCS4B01G260100 chr4D 90.196 102 5 5 1971 2070 310484127 310484225 1.590000e-25 128
10 TraesCS4B01G260100 chr4A 95.163 1716 57 12 2079 3784 37304969 37303270 0.000000e+00 2686
11 TraesCS4B01G260100 chr4A 88.961 1549 88 43 3948 5434 37303269 37301742 0.000000e+00 1836
12 TraesCS4B01G260100 chr4A 88.863 1302 68 24 139 1422 37306869 37305627 0.000000e+00 1530
13 TraesCS4B01G260100 chr4A 96.996 566 16 1 1421 1985 37305533 37304968 0.000000e+00 950
14 TraesCS4B01G260100 chr4A 83.275 287 21 11 182 454 667249973 667249700 7.030000e-59 239
15 TraesCS4B01G260100 chr4A 94.203 138 8 0 1 138 37307163 37307026 1.530000e-50 211
16 TraesCS4B01G260100 chr4A 93.636 110 7 0 3791 3900 37303376 37303267 1.210000e-36 165
17 TraesCS4B01G260100 chr4A 89.000 100 11 0 1984 2083 500769933 500770032 2.060000e-24 124
18 TraesCS4B01G260100 chr3B 83.573 347 37 7 255 587 10486887 10487227 1.900000e-79 307
19 TraesCS4B01G260100 chr5A 83.721 301 24 12 167 454 639745170 639744882 1.500000e-65 261
20 TraesCS4B01G260100 chr6A 83.502 297 27 11 167 454 279288125 279287842 1.940000e-64 257
21 TraesCS4B01G260100 chr6B 83.444 302 23 12 167 454 648563583 648563871 6.980000e-64 255
22 TraesCS4B01G260100 chr6B 82.724 301 27 12 167 454 697573198 697572910 1.510000e-60 244
23 TraesCS4B01G260100 chr1B 83.389 301 25 13 167 454 103074017 103074305 6.980000e-64 255
24 TraesCS4B01G260100 chr6D 83.056 301 26 12 167 454 83694729 83695017 3.250000e-62 250
25 TraesCS4B01G260100 chr6D 90.000 100 10 0 1982 2081 382077594 382077693 4.420000e-26 130
26 TraesCS4B01G260100 chr5B 83.113 302 24 11 167 454 662918113 662917825 3.250000e-62 250
27 TraesCS4B01G260100 chr7A 88.372 129 15 0 535 663 552751569 552751697 7.290000e-34 156
28 TraesCS4B01G260100 chr1A 91.919 99 8 0 1982 2080 590991858 590991956 7.340000e-29 139
29 TraesCS4B01G260100 chr1A 91.000 100 7 2 1983 2081 238868664 238868762 3.410000e-27 134
30 TraesCS4B01G260100 chr3D 91.837 98 8 0 1983 2080 290592803 290592706 2.640000e-28 137
31 TraesCS4B01G260100 chr7D 91.837 98 6 2 1984 2080 119737352 119737448 9.490000e-28 135
32 TraesCS4B01G260100 chr1D 89.216 102 7 4 1981 2080 12070197 12070098 2.060000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G260100 chr4B 527003905 527009338 5433 False 10035.000000 10035 100.000000 1 5434 1 chr4B.!!$F3 5433
1 TraesCS4B01G260100 chr4D 428965398 428970692 5294 False 1968.250000 3011 94.271250 1 5434 4 chr4D.!!$F2 5433
2 TraesCS4B01G260100 chr4A 37301742 37307163 5421 True 1229.666667 2686 92.970333 1 5434 6 chr4A.!!$R2 5433

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
743 933 0.676151 CTCTGCTTCTGGGCCACTTC 60.676 60.0 0.0 0.00 0.00 3.01 F
1158 1348 0.325110 CTCTCTCTCCCTGCTTCCCA 60.325 60.0 0.0 0.00 0.00 4.37 F
2256 2549 0.173708 GGTAGCTGTCTGGAAGGACG 59.826 60.0 0.0 0.00 38.91 4.79 F
3759 4155 1.561643 TGTGGCCACAAAAACCTTGA 58.438 45.0 36.1 8.77 38.56 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1576 1864 1.754226 CCTTCTCAGCTCTCCTACCAC 59.246 57.143 0.00 0.0 0.0 4.16 R
2327 2620 2.925578 TCAAGCGCATTTGGATTCTG 57.074 45.000 11.47 0.0 0.0 3.02 R
3771 4167 0.035458 AAGTGTACTGCAGCTGTCCC 59.965 55.000 15.27 0.0 0.0 4.46 R
5396 5859 0.110486 ATTTCACAAGTGGCCCGTCT 59.890 50.000 0.00 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 7.804129 GGTAACACTGATATATCTCACTCGAAC 59.196 40.741 13.79 3.54 0.00 3.95
141 298 9.067986 TGATATATCTCACTCGAACATACAGTT 57.932 33.333 13.79 0.00 44.93 3.16
192 351 7.553334 TGCTAACTTACTATGTTAACCCAGAG 58.447 38.462 2.48 0.00 30.72 3.35
236 395 2.732658 GTTCGTCCACGGACCACT 59.267 61.111 10.61 0.00 41.82 4.00
248 407 1.726853 GGACCACTGGACGAATGAAG 58.273 55.000 0.71 0.00 0.00 3.02
249 408 1.002087 GGACCACTGGACGAATGAAGT 59.998 52.381 0.71 0.00 0.00 3.01
250 409 2.232941 GGACCACTGGACGAATGAAGTA 59.767 50.000 0.71 0.00 0.00 2.24
251 410 3.251571 GACCACTGGACGAATGAAGTAC 58.748 50.000 0.71 0.00 0.00 2.73
271 430 4.346734 ACGTATGCATCAAGCTTTGAAG 57.653 40.909 0.19 0.00 43.95 3.02
272 431 4.002982 ACGTATGCATCAAGCTTTGAAGA 58.997 39.130 0.19 0.00 43.95 2.87
273 432 4.142816 ACGTATGCATCAAGCTTTGAAGAC 60.143 41.667 0.19 0.00 43.95 3.01
274 433 4.142838 CGTATGCATCAAGCTTTGAAGACA 60.143 41.667 0.19 0.00 43.95 3.41
275 434 3.909776 TGCATCAAGCTTTGAAGACAG 57.090 42.857 0.00 0.00 43.95 3.51
276 435 3.216800 TGCATCAAGCTTTGAAGACAGT 58.783 40.909 0.00 0.00 43.95 3.55
277 436 4.388485 TGCATCAAGCTTTGAAGACAGTA 58.612 39.130 0.00 0.00 43.95 2.74
278 437 4.214119 TGCATCAAGCTTTGAAGACAGTAC 59.786 41.667 0.00 0.00 43.95 2.73
279 438 4.667668 GCATCAAGCTTTGAAGACAGTACG 60.668 45.833 0.00 0.00 43.95 3.67
280 439 4.054780 TCAAGCTTTGAAGACAGTACGT 57.945 40.909 0.00 0.00 36.59 3.57
281 440 4.049186 TCAAGCTTTGAAGACAGTACGTC 58.951 43.478 0.00 9.05 38.75 4.34
282 441 3.027974 AGCTTTGAAGACAGTACGTCC 57.972 47.619 12.27 0.00 46.69 4.79
283 442 2.628657 AGCTTTGAAGACAGTACGTCCT 59.371 45.455 12.27 0.00 46.69 3.85
313 472 6.019881 GCACTGAATTAGAACAACAAAACCAC 60.020 38.462 0.00 0.00 0.00 4.16
322 481 2.159114 ACAACAAAACCACAGACCATGC 60.159 45.455 0.00 0.00 0.00 4.06
341 508 1.228337 ACCAATGAGCTGCAGCACA 60.228 52.632 35.37 35.37 45.04 4.57
419 587 2.644992 GCAAGGGGCGAAAGTGTG 59.355 61.111 0.00 0.00 0.00 3.82
420 588 2.919494 GCAAGGGGCGAAAGTGTGG 61.919 63.158 0.00 0.00 0.00 4.17
575 746 3.766691 GACGGGTAGCCGAAGCCA 61.767 66.667 37.90 0.00 41.25 4.75
732 922 1.131420 CGCACTTTCGCTCTGCTTC 59.869 57.895 0.00 0.00 0.00 3.86
739 929 4.399395 CGCTCTGCTTCTGGGCCA 62.399 66.667 5.85 5.85 0.00 5.36
740 930 2.749441 GCTCTGCTTCTGGGCCAC 60.749 66.667 0.00 0.00 0.00 5.01
743 933 0.676151 CTCTGCTTCTGGGCCACTTC 60.676 60.000 0.00 0.00 0.00 3.01
746 936 1.073897 GCTTCTGGGCCACTTCTGT 59.926 57.895 0.00 0.00 0.00 3.41
788 978 0.788391 CTAACCTGTTTCGCACCGAC 59.212 55.000 0.00 0.00 34.89 4.79
1134 1324 2.855660 TCTACTGCTGCGCGTAATTA 57.144 45.000 8.43 0.00 0.00 1.40
1144 1334 2.947652 TGCGCGTAATTACCTACTCTCT 59.052 45.455 8.43 0.00 0.00 3.10
1150 1340 5.623169 CGTAATTACCTACTCTCTCTCCCT 58.377 45.833 10.01 0.00 0.00 4.20
1158 1348 0.325110 CTCTCTCTCCCTGCTTCCCA 60.325 60.000 0.00 0.00 0.00 4.37
1166 1356 1.693640 CCTGCTTCCCATGTTCCCT 59.306 57.895 0.00 0.00 0.00 4.20
1213 1403 2.289694 TGCTTACCTCTGTTCTCTTGGC 60.290 50.000 0.00 0.00 0.00 4.52
1279 1469 3.117131 AGGGTTTATTCCTTAGGGCATGG 60.117 47.826 0.00 0.00 0.00 3.66
1376 1568 4.194640 TGCTCAAATTCAGCTCTGGATAC 58.805 43.478 9.99 0.00 37.79 2.24
1392 1584 5.067413 TCTGGATACTGAACCTTCATACGAC 59.933 44.000 0.00 0.00 42.08 4.34
1398 1590 3.829948 TGAACCTTCATACGACTCGAAC 58.170 45.455 5.20 0.00 31.01 3.95
1467 1754 2.743664 TCAGCCACTGATTGTCATTTCG 59.256 45.455 0.00 0.00 35.39 3.46
1550 1837 4.569029 GTCTTCGATTTGATGTAAGTGCG 58.431 43.478 0.00 0.00 0.00 5.34
1576 1864 6.410540 AGGAGTTGCTTCTTGGATAACTTAG 58.589 40.000 0.00 0.00 32.23 2.18
1702 1990 1.065564 GCACTGAAGCAGGAGGATCTT 60.066 52.381 0.00 0.00 35.51 2.40
1762 2050 9.860898 GAGTTAAATCTATGGCATGAAAAAGTT 57.139 29.630 10.98 0.00 0.00 2.66
1817 2109 8.783093 TGAACAGTAGTAAATTCCTTTGATGTG 58.217 33.333 0.00 0.00 0.00 3.21
1828 2121 4.335416 TCCTTTGATGTGGTTGATCTTCC 58.665 43.478 0.00 0.00 0.00 3.46
1872 2165 3.134458 CTCTTTTCGTGCAGGAGAGTTT 58.866 45.455 9.34 0.00 31.49 2.66
1983 2276 5.886474 GGGCTTTAGACTTTGGTTAGCTTAT 59.114 40.000 0.00 0.00 0.00 1.73
1984 2277 7.052248 GGGCTTTAGACTTTGGTTAGCTTATA 58.948 38.462 0.00 0.00 0.00 0.98
1985 2278 7.012138 GGGCTTTAGACTTTGGTTAGCTTATAC 59.988 40.741 0.00 0.00 0.00 1.47
1986 2279 7.769507 GGCTTTAGACTTTGGTTAGCTTATACT 59.230 37.037 0.00 0.00 0.00 2.12
1987 2280 8.819015 GCTTTAGACTTTGGTTAGCTTATACTC 58.181 37.037 0.00 0.00 0.00 2.59
1988 2281 9.315525 CTTTAGACTTTGGTTAGCTTATACTCC 57.684 37.037 0.00 0.00 0.00 3.85
1989 2282 6.236558 AGACTTTGGTTAGCTTATACTCCC 57.763 41.667 0.00 0.00 0.00 4.30
1990 2283 5.965091 AGACTTTGGTTAGCTTATACTCCCT 59.035 40.000 0.00 0.00 0.00 4.20
1991 2284 6.098552 AGACTTTGGTTAGCTTATACTCCCTC 59.901 42.308 0.00 0.00 0.00 4.30
1992 2285 5.965091 ACTTTGGTTAGCTTATACTCCCTCT 59.035 40.000 0.00 0.00 0.00 3.69
1993 2286 5.871396 TTGGTTAGCTTATACTCCCTCTG 57.129 43.478 0.00 0.00 0.00 3.35
1994 2287 5.138758 TGGTTAGCTTATACTCCCTCTGA 57.861 43.478 0.00 0.00 0.00 3.27
1995 2288 4.894114 TGGTTAGCTTATACTCCCTCTGAC 59.106 45.833 0.00 0.00 0.00 3.51
1996 2289 4.281435 GGTTAGCTTATACTCCCTCTGACC 59.719 50.000 0.00 0.00 0.00 4.02
1997 2290 2.965562 AGCTTATACTCCCTCTGACCC 58.034 52.381 0.00 0.00 0.00 4.46
1998 2291 2.247635 AGCTTATACTCCCTCTGACCCA 59.752 50.000 0.00 0.00 0.00 4.51
1999 2292 3.039011 GCTTATACTCCCTCTGACCCAA 58.961 50.000 0.00 0.00 0.00 4.12
2000 2293 3.454812 GCTTATACTCCCTCTGACCCAAA 59.545 47.826 0.00 0.00 0.00 3.28
2001 2294 4.080526 GCTTATACTCCCTCTGACCCAAAA 60.081 45.833 0.00 0.00 0.00 2.44
2002 2295 5.398012 GCTTATACTCCCTCTGACCCAAAAT 60.398 44.000 0.00 0.00 0.00 1.82
2003 2296 6.183361 GCTTATACTCCCTCTGACCCAAAATA 60.183 42.308 0.00 0.00 0.00 1.40
2004 2297 7.637301 GCTTATACTCCCTCTGACCCAAAATAA 60.637 40.741 0.00 0.00 0.00 1.40
2005 2298 4.576330 ACTCCCTCTGACCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
2006 2299 3.916989 ACTCCCTCTGACCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
2007 2300 4.263506 ACTCCCTCTGACCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
2008 2301 3.913799 TCCCTCTGACCCAAAATAAGTGA 59.086 43.478 0.00 0.00 0.00 3.41
2009 2302 4.010349 CCCTCTGACCCAAAATAAGTGAC 58.990 47.826 0.00 0.00 0.00 3.67
2010 2303 4.263506 CCCTCTGACCCAAAATAAGTGACT 60.264 45.833 0.00 0.00 0.00 3.41
2011 2304 4.938226 CCTCTGACCCAAAATAAGTGACTC 59.062 45.833 0.00 0.00 0.00 3.36
2012 2305 5.513094 CCTCTGACCCAAAATAAGTGACTCA 60.513 44.000 0.00 0.00 0.00 3.41
2013 2306 5.935945 TCTGACCCAAAATAAGTGACTCAA 58.064 37.500 0.00 0.00 0.00 3.02
2014 2307 5.763204 TCTGACCCAAAATAAGTGACTCAAC 59.237 40.000 0.00 0.00 0.00 3.18
2015 2308 5.690865 TGACCCAAAATAAGTGACTCAACT 58.309 37.500 0.00 0.00 0.00 3.16
2016 2309 6.126409 TGACCCAAAATAAGTGACTCAACTT 58.874 36.000 0.00 0.00 42.89 2.66
2017 2310 6.605594 TGACCCAAAATAAGTGACTCAACTTT 59.394 34.615 0.00 0.00 40.77 2.66
2018 2311 7.776030 TGACCCAAAATAAGTGACTCAACTTTA 59.224 33.333 0.00 0.00 40.77 1.85
2019 2312 8.706322 ACCCAAAATAAGTGACTCAACTTTAT 57.294 30.769 0.00 0.00 40.77 1.40
2020 2313 9.802039 ACCCAAAATAAGTGACTCAACTTTATA 57.198 29.630 0.00 0.00 40.77 0.98
2066 2359 9.965824 AGTACAAAATTGAGTCACTTATTTTGG 57.034 29.630 28.46 18.25 45.43 3.28
2067 2360 9.191995 GTACAAAATTGAGTCACTTATTTTGGG 57.808 33.333 28.46 15.64 45.43 4.12
2068 2361 8.017418 ACAAAATTGAGTCACTTATTTTGGGA 57.983 30.769 28.46 1.96 45.43 4.37
2069 2362 7.926018 ACAAAATTGAGTCACTTATTTTGGGAC 59.074 33.333 28.46 7.24 45.43 4.46
2070 2363 5.880054 ATTGAGTCACTTATTTTGGGACG 57.120 39.130 0.00 0.00 33.84 4.79
2071 2364 4.610605 TGAGTCACTTATTTTGGGACGA 57.389 40.909 0.00 0.00 33.84 4.20
2072 2365 4.963373 TGAGTCACTTATTTTGGGACGAA 58.037 39.130 0.00 0.00 33.84 3.85
2073 2366 5.369833 TGAGTCACTTATTTTGGGACGAAA 58.630 37.500 0.00 0.00 33.84 3.46
2074 2367 5.468746 TGAGTCACTTATTTTGGGACGAAAG 59.531 40.000 0.00 0.00 33.84 2.62
2075 2368 4.760204 AGTCACTTATTTTGGGACGAAAGG 59.240 41.667 0.00 0.00 33.84 3.11
2076 2369 4.758165 GTCACTTATTTTGGGACGAAAGGA 59.242 41.667 0.00 0.00 0.00 3.36
2077 2370 5.001232 TCACTTATTTTGGGACGAAAGGAG 58.999 41.667 0.00 0.00 0.00 3.69
2211 2504 0.178068 GCTAACCGATGAGCCCTTCA 59.822 55.000 0.00 0.00 40.85 3.02
2256 2549 0.173708 GGTAGCTGTCTGGAAGGACG 59.826 60.000 0.00 0.00 38.91 4.79
2267 2560 8.634444 GCTGTCTGGAAGGACGATATATATTAT 58.366 37.037 0.00 0.00 38.91 1.28
2327 2620 2.358898 TGTTTGCCTTCTGAACTTCTGC 59.641 45.455 0.00 0.00 0.00 4.26
3065 3358 7.139287 TCCTATGATCCCGTTACCAAAAATA 57.861 36.000 0.00 0.00 0.00 1.40
3759 4155 1.561643 TGTGGCCACAAAAACCTTGA 58.438 45.000 36.10 8.77 38.56 3.02
3767 4163 4.509970 GCCACAAAAACCTTGACCATTAAC 59.490 41.667 0.00 0.00 0.00 2.01
3768 4164 5.683770 GCCACAAAAACCTTGACCATTAACT 60.684 40.000 0.00 0.00 0.00 2.24
3769 4165 6.345298 CCACAAAAACCTTGACCATTAACTT 58.655 36.000 0.00 0.00 0.00 2.66
3770 4166 6.821160 CCACAAAAACCTTGACCATTAACTTT 59.179 34.615 0.00 0.00 0.00 2.66
3771 4167 7.201600 CCACAAAAACCTTGACCATTAACTTTG 60.202 37.037 0.00 0.00 0.00 2.77
3772 4168 6.821160 ACAAAAACCTTGACCATTAACTTTGG 59.179 34.615 0.00 0.00 40.26 3.28
3773 4169 5.545063 AAACCTTGACCATTAACTTTGGG 57.455 39.130 0.00 0.00 38.64 4.12
3774 4170 4.463050 ACCTTGACCATTAACTTTGGGA 57.537 40.909 0.00 0.00 38.64 4.37
3775 4171 4.149598 ACCTTGACCATTAACTTTGGGAC 58.850 43.478 0.00 0.00 38.64 4.46
3776 4172 4.148838 CCTTGACCATTAACTTTGGGACA 58.851 43.478 0.00 0.00 38.64 4.02
3777 4173 4.218417 CCTTGACCATTAACTTTGGGACAG 59.782 45.833 0.00 0.00 42.39 3.51
3778 4174 3.153919 TGACCATTAACTTTGGGACAGC 58.846 45.455 0.00 0.00 42.39 4.40
3779 4175 3.181434 TGACCATTAACTTTGGGACAGCT 60.181 43.478 0.00 0.00 42.39 4.24
3780 4176 3.157087 ACCATTAACTTTGGGACAGCTG 58.843 45.455 13.48 13.48 42.39 4.24
3781 4177 2.094545 CCATTAACTTTGGGACAGCTGC 60.095 50.000 15.27 6.61 42.39 5.25
3782 4178 2.356665 TTAACTTTGGGACAGCTGCA 57.643 45.000 15.27 0.06 42.39 4.41
3783 4179 1.896220 TAACTTTGGGACAGCTGCAG 58.104 50.000 15.27 10.11 42.39 4.41
3784 4180 0.106519 AACTTTGGGACAGCTGCAGT 60.107 50.000 15.27 0.00 42.39 4.40
3785 4181 0.764890 ACTTTGGGACAGCTGCAGTA 59.235 50.000 15.27 0.00 42.39 2.74
3786 4182 1.160137 CTTTGGGACAGCTGCAGTAC 58.840 55.000 15.27 0.00 42.39 2.73
3787 4183 0.472044 TTTGGGACAGCTGCAGTACA 59.528 50.000 15.27 3.23 42.39 2.90
3788 4184 0.250295 TTGGGACAGCTGCAGTACAC 60.250 55.000 15.27 6.26 42.39 2.90
3789 4185 1.121407 TGGGACAGCTGCAGTACACT 61.121 55.000 15.27 0.00 0.00 3.55
3903 4299 2.972625 TGGCACAACTGCAGTATACTC 58.027 47.619 22.01 10.80 46.28 2.59
3920 4316 7.966753 CAGTATACTCGTCTTTTAAGCACTGTA 59.033 37.037 1.26 0.00 0.00 2.74
3922 4318 7.757097 ATACTCGTCTTTTAAGCACTGTATG 57.243 36.000 0.00 0.00 0.00 2.39
3924 4320 5.989777 ACTCGTCTTTTAAGCACTGTATGTT 59.010 36.000 0.00 0.00 0.00 2.71
3925 4321 6.145696 ACTCGTCTTTTAAGCACTGTATGTTC 59.854 38.462 0.00 0.00 0.00 3.18
3926 4322 5.407387 TCGTCTTTTAAGCACTGTATGTTCC 59.593 40.000 0.00 0.00 0.00 3.62
3928 4324 6.128282 CGTCTTTTAAGCACTGTATGTTCCAT 60.128 38.462 0.00 0.00 0.00 3.41
3929 4325 7.064134 CGTCTTTTAAGCACTGTATGTTCCATA 59.936 37.037 0.00 0.00 0.00 2.74
3930 4326 8.175716 GTCTTTTAAGCACTGTATGTTCCATAC 58.824 37.037 7.30 7.30 0.00 2.39
3931 4327 6.995511 TTTAAGCACTGTATGTTCCATACC 57.004 37.500 10.88 0.00 0.00 2.73
3932 4328 4.844349 AAGCACTGTATGTTCCATACCT 57.156 40.909 10.88 0.18 0.00 3.08
4162 4558 2.427232 TGCTGCTTTGCATCTTGTTC 57.573 45.000 0.00 0.00 38.13 3.18
4168 4564 3.054878 GCTTTGCATCTTGTTCCAGTTG 58.945 45.455 0.00 0.00 0.00 3.16
4565 4983 6.000891 TCACAACAGATTTTTCAGAATCCG 57.999 37.500 0.00 0.00 36.84 4.18
4586 5004 4.097714 CGCATCTTAATCAAACACGCATT 58.902 39.130 0.00 0.00 0.00 3.56
4603 5030 4.394920 ACGCATTCGAGTAAATGTTTCCAT 59.605 37.500 0.00 0.00 38.60 3.41
4644 5073 7.874528 ACTATTACACGTAAACTTGTAAGCCTT 59.125 33.333 14.85 4.37 41.64 4.35
4648 5077 5.049886 ACACGTAAACTTGTAAGCCTTAAGC 60.050 40.000 0.00 0.00 44.25 3.09
4744 5190 4.024556 GCGCATACAGATCTTGTGCTAATT 60.025 41.667 19.49 0.00 42.17 1.40
4750 5196 6.506500 ACAGATCTTGTGCTAATTGAAAGG 57.493 37.500 0.00 0.00 38.99 3.11
4770 5217 3.755378 AGGCAAATGACTCAAGTGATGTC 59.245 43.478 0.00 0.00 0.00 3.06
4771 5218 3.425359 GGCAAATGACTCAAGTGATGTCG 60.425 47.826 0.00 0.00 33.81 4.35
4800 5247 2.397549 GCAAACTTGTGAGGCATCAAC 58.602 47.619 0.92 0.00 37.14 3.18
4814 5262 1.209504 CATCAACTGGACGGGGTACAT 59.790 52.381 0.00 0.00 0.00 2.29
4858 5306 3.546815 GCTGGTGTGCTATATTTTCTGCG 60.547 47.826 0.00 0.00 0.00 5.18
4862 5310 6.517605 TGGTGTGCTATATTTTCTGCGTATA 58.482 36.000 0.00 0.00 0.00 1.47
4929 5378 7.757526 TCAATATTGTTGTGTAGGTGTTATGC 58.242 34.615 14.97 0.00 0.00 3.14
4943 5394 3.068560 TGTTATGCACCGACCTTTACAC 58.931 45.455 0.00 0.00 0.00 2.90
5000 5453 1.019673 GGGCACTGCACAGATATGTG 58.980 55.000 16.15 16.15 42.32 3.21
5101 5554 6.003950 TCCTATCACCAGTCCAAAAGAAAAG 58.996 40.000 0.00 0.00 0.00 2.27
5102 5555 6.003950 CCTATCACCAGTCCAAAAGAAAAGA 58.996 40.000 0.00 0.00 0.00 2.52
5216 5679 0.728466 GTCGACCTGTACAGTGCGTC 60.728 60.000 24.60 20.70 0.00 5.19
5381 5844 0.032678 CCAGAATAGACGCGATGGCT 59.967 55.000 15.93 6.96 36.88 4.75
5394 5857 0.461961 GATGGCTAGGAGCACGAAGT 59.538 55.000 0.21 0.00 44.75 3.01
5395 5858 0.905357 ATGGCTAGGAGCACGAAGTT 59.095 50.000 0.21 0.00 44.75 2.66
5396 5859 1.552578 TGGCTAGGAGCACGAAGTTA 58.447 50.000 0.21 0.00 44.75 2.24
5406 5869 1.012486 CACGAAGTTAGACGGGCCAC 61.012 60.000 4.39 0.00 41.61 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.715534 TGTTTCACCCCATAGACTGAAA 57.284 40.909 0.00 0.00 31.68 2.69
133 134 5.344128 GCATTTGCTTCAGTTGAACTGTATG 59.656 40.000 23.17 17.04 41.46 2.39
141 298 1.958579 AGCTGCATTTGCTTCAGTTGA 59.041 42.857 1.02 0.00 42.66 3.18
145 302 2.738147 GCAGCTGCATTTGCTTCAG 58.262 52.632 33.36 0.00 42.66 3.02
192 351 2.674796 AGCTGGTTCACTCGGATTAC 57.325 50.000 0.00 0.00 0.00 1.89
236 395 3.119424 TGCATACGTACTTCATTCGTCCA 60.119 43.478 0.00 0.00 38.69 4.02
248 407 4.857871 TCAAAGCTTGATGCATACGTAC 57.142 40.909 0.00 0.00 45.94 3.67
249 408 5.063438 GTCTTCAAAGCTTGATGCATACGTA 59.937 40.000 0.00 0.00 45.94 3.57
250 409 4.002982 TCTTCAAAGCTTGATGCATACGT 58.997 39.130 0.00 0.00 45.94 3.57
251 410 4.142838 TGTCTTCAAAGCTTGATGCATACG 60.143 41.667 0.00 0.00 45.94 3.06
272 431 2.030185 CAGTGCTGTTAGGACGTACTGT 60.030 50.000 11.61 0.00 41.78 3.55
273 432 2.228103 TCAGTGCTGTTAGGACGTACTG 59.772 50.000 11.61 6.77 41.78 2.74
274 433 2.511659 TCAGTGCTGTTAGGACGTACT 58.488 47.619 5.18 5.18 41.78 2.73
275 434 3.293311 TTCAGTGCTGTTAGGACGTAC 57.707 47.619 0.00 0.00 41.78 3.67
276 435 4.530710 AATTCAGTGCTGTTAGGACGTA 57.469 40.909 0.00 0.00 41.78 3.57
277 436 3.402628 AATTCAGTGCTGTTAGGACGT 57.597 42.857 0.00 0.00 41.78 4.34
278 437 4.744570 TCTAATTCAGTGCTGTTAGGACG 58.255 43.478 8.66 0.00 41.78 4.79
279 438 5.932303 TGTTCTAATTCAGTGCTGTTAGGAC 59.068 40.000 11.23 11.23 36.76 3.85
280 439 6.109156 TGTTCTAATTCAGTGCTGTTAGGA 57.891 37.500 8.66 0.46 0.00 2.94
281 440 6.204688 TGTTGTTCTAATTCAGTGCTGTTAGG 59.795 38.462 8.66 0.00 0.00 2.69
282 441 7.189693 TGTTGTTCTAATTCAGTGCTGTTAG 57.810 36.000 0.00 2.03 0.00 2.34
283 442 7.561021 TTGTTGTTCTAATTCAGTGCTGTTA 57.439 32.000 0.00 0.00 0.00 2.41
313 472 0.454600 GCTCATTGGTGCATGGTCTG 59.545 55.000 0.00 0.00 33.80 3.51
322 481 1.211969 GTGCTGCAGCTCATTGGTG 59.788 57.895 36.61 0.00 46.12 4.17
341 508 5.505181 TGGTTTCTTCTGCTCCTAATTCT 57.495 39.130 0.00 0.00 0.00 2.40
414 582 3.340814 CAAGGTATCTTGCTCCACACT 57.659 47.619 2.04 0.00 43.10 3.55
419 587 9.770926 CTGTACCAGATCAAGGTATCTTGCTCC 62.771 48.148 14.49 5.18 43.42 4.70
420 588 6.958296 CTGTACCAGATCAAGGTATCTTGCTC 60.958 46.154 11.09 11.01 43.08 4.26
575 746 3.588336 GACTCCGTCGCTGTAGGT 58.412 61.111 0.00 0.00 0.00 3.08
721 911 4.087892 GGCCCAGAAGCAGAGCGA 62.088 66.667 0.00 0.00 0.00 4.93
732 922 0.607489 CCAGAACAGAAGTGGCCCAG 60.607 60.000 0.00 0.00 0.00 4.45
739 929 0.178990 GCCCAACCCAGAACAGAAGT 60.179 55.000 0.00 0.00 0.00 3.01
740 930 0.111253 AGCCCAACCCAGAACAGAAG 59.889 55.000 0.00 0.00 0.00 2.85
743 933 1.604593 CCAGCCCAACCCAGAACAG 60.605 63.158 0.00 0.00 0.00 3.16
746 936 4.299796 GCCCAGCCCAACCCAGAA 62.300 66.667 0.00 0.00 0.00 3.02
811 1001 3.958147 TCAGCCCGTGATAGAATAGAACA 59.042 43.478 0.00 0.00 0.00 3.18
1134 1324 1.304891 AGCAGGGAGAGAGAGTAGGT 58.695 55.000 0.00 0.00 0.00 3.08
1144 1334 0.620556 GAACATGGGAAGCAGGGAGA 59.379 55.000 0.00 0.00 0.00 3.71
1150 1340 0.038166 GTGAGGGAACATGGGAAGCA 59.962 55.000 0.00 0.00 0.00 3.91
1158 1348 0.038744 CAAGGCTGGTGAGGGAACAT 59.961 55.000 0.00 0.00 0.00 2.71
1213 1403 9.162793 CGAAATTCGAATCAGAATCCTAAATTG 57.837 33.333 11.83 0.00 43.74 2.32
1264 1454 2.582636 ACAAGTCCATGCCCTAAGGAAT 59.417 45.455 0.00 0.00 32.30 3.01
1376 1568 3.759527 TCGAGTCGTATGAAGGTTCAG 57.240 47.619 13.12 0.00 41.08 3.02
1392 1584 3.521560 TGCTAATGTGGCTAAGTTCGAG 58.478 45.455 0.00 0.00 0.00 4.04
1398 1590 5.824904 AATCAACTGCTAATGTGGCTAAG 57.175 39.130 0.00 0.00 0.00 2.18
1467 1754 4.694339 AGAACGTGAGCCTAATATCCAAC 58.306 43.478 0.00 0.00 0.00 3.77
1550 1837 5.735766 AGTTATCCAAGAAGCAACTCCTAC 58.264 41.667 0.00 0.00 0.00 3.18
1576 1864 1.754226 CCTTCTCAGCTCTCCTACCAC 59.246 57.143 0.00 0.00 0.00 4.16
1702 1990 6.183361 TGTTCTTGTGGAAAGTGAGAGGAATA 60.183 38.462 0.00 0.00 35.51 1.75
1762 2050 5.692115 TCTATTTGGTTCAGGCTACATCA 57.308 39.130 0.00 0.00 0.00 3.07
1817 2109 2.403252 ATGACACCGGAAGATCAACC 57.597 50.000 9.46 0.00 0.00 3.77
1983 2276 5.045869 CACTTATTTTGGGTCAGAGGGAGTA 60.046 44.000 0.00 0.00 0.00 2.59
1984 2277 3.916989 ACTTATTTTGGGTCAGAGGGAGT 59.083 43.478 0.00 0.00 0.00 3.85
1985 2278 4.019321 TCACTTATTTTGGGTCAGAGGGAG 60.019 45.833 0.00 0.00 0.00 4.30
1986 2279 3.913799 TCACTTATTTTGGGTCAGAGGGA 59.086 43.478 0.00 0.00 0.00 4.20
1987 2280 4.010349 GTCACTTATTTTGGGTCAGAGGG 58.990 47.826 0.00 0.00 0.00 4.30
1988 2281 4.911390 AGTCACTTATTTTGGGTCAGAGG 58.089 43.478 0.00 0.00 0.00 3.69
1989 2282 5.551233 TGAGTCACTTATTTTGGGTCAGAG 58.449 41.667 0.00 0.00 0.00 3.35
1990 2283 5.560722 TGAGTCACTTATTTTGGGTCAGA 57.439 39.130 0.00 0.00 0.00 3.27
1991 2284 5.765182 AGTTGAGTCACTTATTTTGGGTCAG 59.235 40.000 0.00 0.00 0.00 3.51
1992 2285 5.690865 AGTTGAGTCACTTATTTTGGGTCA 58.309 37.500 0.00 0.00 0.00 4.02
1993 2286 6.635030 AAGTTGAGTCACTTATTTTGGGTC 57.365 37.500 0.00 0.00 35.10 4.46
1994 2287 8.706322 ATAAAGTTGAGTCACTTATTTTGGGT 57.294 30.769 0.00 0.00 35.87 4.51
2040 2333 9.965824 CCAAAATAAGTGACTCAATTTTGTACT 57.034 29.630 26.81 6.87 43.14 2.73
2041 2334 9.191995 CCCAAAATAAGTGACTCAATTTTGTAC 57.808 33.333 26.81 0.00 43.14 2.90
2042 2335 9.137459 TCCCAAAATAAGTGACTCAATTTTGTA 57.863 29.630 26.81 18.89 43.14 2.41
2043 2336 7.926018 GTCCCAAAATAAGTGACTCAATTTTGT 59.074 33.333 26.81 7.84 43.14 2.83
2044 2337 7.114811 CGTCCCAAAATAAGTGACTCAATTTTG 59.885 37.037 24.60 24.60 43.77 2.44
2045 2338 7.013846 TCGTCCCAAAATAAGTGACTCAATTTT 59.986 33.333 10.89 10.89 33.07 1.82
2046 2339 6.488683 TCGTCCCAAAATAAGTGACTCAATTT 59.511 34.615 0.00 0.00 0.00 1.82
2047 2340 6.001460 TCGTCCCAAAATAAGTGACTCAATT 58.999 36.000 0.00 0.00 0.00 2.32
2048 2341 5.556915 TCGTCCCAAAATAAGTGACTCAAT 58.443 37.500 0.00 0.00 0.00 2.57
2049 2342 4.963373 TCGTCCCAAAATAAGTGACTCAA 58.037 39.130 0.00 0.00 0.00 3.02
2050 2343 4.610605 TCGTCCCAAAATAAGTGACTCA 57.389 40.909 0.00 0.00 0.00 3.41
2051 2344 5.106673 CCTTTCGTCCCAAAATAAGTGACTC 60.107 44.000 0.00 0.00 0.00 3.36
2052 2345 4.760204 CCTTTCGTCCCAAAATAAGTGACT 59.240 41.667 0.00 0.00 0.00 3.41
2053 2346 4.758165 TCCTTTCGTCCCAAAATAAGTGAC 59.242 41.667 0.00 0.00 0.00 3.67
2054 2347 4.975631 TCCTTTCGTCCCAAAATAAGTGA 58.024 39.130 0.00 0.00 0.00 3.41
2055 2348 4.760204 ACTCCTTTCGTCCCAAAATAAGTG 59.240 41.667 0.00 0.00 0.00 3.16
2056 2349 4.981812 ACTCCTTTCGTCCCAAAATAAGT 58.018 39.130 0.00 0.00 0.00 2.24
2057 2350 8.726870 TTATACTCCTTTCGTCCCAAAATAAG 57.273 34.615 0.00 0.00 0.00 1.73
2059 2352 9.991906 CTATTATACTCCTTTCGTCCCAAAATA 57.008 33.333 0.00 0.00 0.00 1.40
2060 2353 8.491958 ACTATTATACTCCTTTCGTCCCAAAAT 58.508 33.333 0.00 0.00 0.00 1.82
2061 2354 7.767198 CACTATTATACTCCTTTCGTCCCAAAA 59.233 37.037 0.00 0.00 0.00 2.44
2062 2355 7.093201 ACACTATTATACTCCTTTCGTCCCAAA 60.093 37.037 0.00 0.00 0.00 3.28
2063 2356 6.381994 ACACTATTATACTCCTTTCGTCCCAA 59.618 38.462 0.00 0.00 0.00 4.12
2064 2357 5.895534 ACACTATTATACTCCTTTCGTCCCA 59.104 40.000 0.00 0.00 0.00 4.37
2065 2358 6.402456 ACACTATTATACTCCTTTCGTCCC 57.598 41.667 0.00 0.00 0.00 4.46
2066 2359 8.713737 AAAACACTATTATACTCCTTTCGTCC 57.286 34.615 0.00 0.00 0.00 4.79
2068 2361 9.715121 TGAAAAACACTATTATACTCCTTTCGT 57.285 29.630 0.00 0.00 0.00 3.85
2072 2365 9.449719 CACCTGAAAAACACTATTATACTCCTT 57.550 33.333 0.00 0.00 0.00 3.36
2073 2366 8.047310 CCACCTGAAAAACACTATTATACTCCT 58.953 37.037 0.00 0.00 0.00 3.69
2074 2367 7.827729 ACCACCTGAAAAACACTATTATACTCC 59.172 37.037 0.00 0.00 0.00 3.85
2075 2368 8.788325 ACCACCTGAAAAACACTATTATACTC 57.212 34.615 0.00 0.00 0.00 2.59
2076 2369 8.380099 TGACCACCTGAAAAACACTATTATACT 58.620 33.333 0.00 0.00 0.00 2.12
2077 2370 8.556213 TGACCACCTGAAAAACACTATTATAC 57.444 34.615 0.00 0.00 0.00 1.47
2211 2504 6.485313 TGAATTGTTATCAAGTCCTTTCGTGT 59.515 34.615 10.54 0.00 44.68 4.49
2327 2620 2.925578 TCAAGCGCATTTGGATTCTG 57.074 45.000 11.47 0.00 0.00 3.02
2864 3157 7.496346 TTTAGCATTTATAGGATCCCGATCT 57.504 36.000 8.55 0.00 37.92 2.75
3702 4097 5.986501 AAAGCACCCGGTATTTTCATTTA 57.013 34.783 0.00 0.00 0.00 1.40
3728 4123 3.924144 TGTGGCCACAAAATCTTATTGC 58.076 40.909 36.10 4.53 38.56 3.56
3753 4149 4.149598 GTCCCAAAGTTAATGGTCAAGGT 58.850 43.478 0.00 0.00 36.14 3.50
3754 4150 4.148838 TGTCCCAAAGTTAATGGTCAAGG 58.851 43.478 0.00 0.00 36.14 3.61
3755 4151 4.321230 GCTGTCCCAAAGTTAATGGTCAAG 60.321 45.833 0.00 0.00 36.14 3.02
3759 4155 3.157087 CAGCTGTCCCAAAGTTAATGGT 58.843 45.455 5.25 0.00 36.14 3.55
3767 4163 1.160137 GTACTGCAGCTGTCCCAAAG 58.840 55.000 15.27 6.38 0.00 2.77
3768 4164 0.472044 TGTACTGCAGCTGTCCCAAA 59.528 50.000 15.27 0.00 0.00 3.28
3769 4165 0.250295 GTGTACTGCAGCTGTCCCAA 60.250 55.000 15.27 0.00 0.00 4.12
3770 4166 1.121407 AGTGTACTGCAGCTGTCCCA 61.121 55.000 15.27 3.82 0.00 4.37
3771 4167 0.035458 AAGTGTACTGCAGCTGTCCC 59.965 55.000 15.27 0.00 0.00 4.46
3772 4168 1.151668 CAAGTGTACTGCAGCTGTCC 58.848 55.000 15.27 0.00 0.00 4.02
3773 4169 0.514691 GCAAGTGTACTGCAGCTGTC 59.485 55.000 15.27 8.39 0.00 3.51
3774 4170 0.179048 TGCAAGTGTACTGCAGCTGT 60.179 50.000 15.27 10.14 34.25 4.40
3775 4171 1.162698 ATGCAAGTGTACTGCAGCTG 58.837 50.000 15.27 10.11 42.11 4.24
3776 4172 1.901591 AATGCAAGTGTACTGCAGCT 58.098 45.000 15.27 3.67 42.11 4.24
3777 4173 2.712057 AAATGCAAGTGTACTGCAGC 57.288 45.000 15.27 0.00 42.11 5.25
3829 4225 8.132362 ACAATATCTTGTTTGCGAAAAACTACA 58.868 29.630 13.27 0.00 43.05 2.74
3838 4234 2.163412 GGCCACAATATCTTGTTTGCGA 59.837 45.455 0.00 0.00 43.05 5.10
3899 4295 6.684686 ACATACAGTGCTTAAAAGACGAGTA 58.315 36.000 0.00 0.00 0.00 2.59
3903 4299 5.178623 TGGAACATACAGTGCTTAAAAGACG 59.821 40.000 0.00 0.00 0.00 4.18
3947 4343 5.064707 ACAACTATGCCGAACACAATACATC 59.935 40.000 0.00 0.00 0.00 3.06
4162 4558 0.038744 AGGCACTGGAATCCAACTGG 59.961 55.000 2.61 0.00 37.18 4.00
4168 4564 0.813821 GCAAAGAGGCACTGGAATCC 59.186 55.000 0.00 0.00 41.55 3.01
4504 4911 7.632898 GCATTCTGGACAGTTAATACACTAGGA 60.633 40.741 0.00 0.00 0.00 2.94
4565 4983 4.202959 CGAATGCGTGTTTGATTAAGATGC 59.797 41.667 0.00 0.00 41.21 3.91
4619 5046 7.823149 AGGCTTACAAGTTTACGTGTAATAG 57.177 36.000 17.46 10.74 45.01 1.73
4628 5055 5.636543 TCTCGCTTAAGGCTTACAAGTTTAC 59.363 40.000 6.43 0.00 39.13 2.01
4629 5056 5.636543 GTCTCGCTTAAGGCTTACAAGTTTA 59.363 40.000 6.43 0.00 39.13 2.01
4636 5065 2.955614 TGTGTCTCGCTTAAGGCTTAC 58.044 47.619 6.43 0.00 39.13 2.34
4744 5190 4.206375 TCACTTGAGTCATTTGCCTTTCA 58.794 39.130 0.00 0.00 0.00 2.69
4750 5196 3.433274 TCGACATCACTTGAGTCATTTGC 59.567 43.478 0.00 0.00 32.68 3.68
4770 5217 4.142816 CCTCACAAGTTTGCCTTTCTATCG 60.143 45.833 0.00 0.00 0.00 2.92
4771 5218 4.379918 GCCTCACAAGTTTGCCTTTCTATC 60.380 45.833 0.00 0.00 0.00 2.08
4785 5232 1.808945 GTCCAGTTGATGCCTCACAAG 59.191 52.381 0.00 0.00 0.00 3.16
4786 5233 1.877680 CGTCCAGTTGATGCCTCACAA 60.878 52.381 0.00 0.00 0.00 3.33
4787 5234 0.320683 CGTCCAGTTGATGCCTCACA 60.321 55.000 0.00 0.00 0.00 3.58
4800 5247 1.066918 GCGTATGTACCCCGTCCAG 59.933 63.158 0.00 0.00 0.00 3.86
4869 5317 8.790718 TGTAGGTGAACACTACTCTTAGTTAAG 58.209 37.037 4.96 0.00 41.03 1.85
4878 5326 6.053650 AGGTTTTTGTAGGTGAACACTACTC 58.946 40.000 4.96 0.00 41.03 2.59
4879 5327 5.997843 AGGTTTTTGTAGGTGAACACTACT 58.002 37.500 4.96 0.00 41.03 2.57
4880 5328 7.658575 TGATAGGTTTTTGTAGGTGAACACTAC 59.341 37.037 4.96 0.00 40.87 2.73
4929 5378 2.814280 ACTCTGTGTAAAGGTCGGTG 57.186 50.000 0.00 0.00 0.00 4.94
5000 5453 3.874392 AATTCTGGTTTAGCCACATGC 57.126 42.857 0.00 0.00 43.61 4.06
5076 5529 4.826274 TCTTTTGGACTGGTGATAGGAG 57.174 45.455 0.00 0.00 0.00 3.69
5078 5531 6.003950 TCTTTTCTTTTGGACTGGTGATAGG 58.996 40.000 0.00 0.00 0.00 2.57
5079 5532 7.510549 TTCTTTTCTTTTGGACTGGTGATAG 57.489 36.000 0.00 0.00 0.00 2.08
5123 5576 7.972277 GTGAACATGTTCTGCAAGATGAATAAT 59.028 33.333 32.57 0.00 46.36 1.28
5124 5577 7.307694 GTGAACATGTTCTGCAAGATGAATAA 58.692 34.615 32.57 10.14 46.36 1.40
5125 5578 6.127925 GGTGAACATGTTCTGCAAGATGAATA 60.128 38.462 32.57 10.54 46.36 1.75
5126 5579 5.336213 GGTGAACATGTTCTGCAAGATGAAT 60.336 40.000 32.57 0.00 46.36 2.57
5128 5581 3.503363 GGTGAACATGTTCTGCAAGATGA 59.497 43.478 32.57 11.86 46.36 2.92
5216 5679 4.864916 AGTTCATCAAATGGTCGATTCG 57.135 40.909 0.00 0.00 0.00 3.34
5288 5751 4.945543 AGTGGTTGTTCGGAGTTTAGTTTT 59.054 37.500 0.00 0.00 0.00 2.43
5327 5790 3.612860 AGCGTGCGTAGTTCTGAATAAAG 59.387 43.478 0.00 0.00 0.00 1.85
5334 5797 0.710567 CTCAAGCGTGCGTAGTTCTG 59.289 55.000 0.00 0.00 0.00 3.02
5381 5844 1.741706 CCGTCTAACTTCGTGCTCCTA 59.258 52.381 0.00 0.00 0.00 2.94
5394 5857 0.759959 TTCACAAGTGGCCCGTCTAA 59.240 50.000 0.00 0.00 0.00 2.10
5395 5858 0.759959 TTTCACAAGTGGCCCGTCTA 59.240 50.000 0.00 0.00 0.00 2.59
5396 5859 0.110486 ATTTCACAAGTGGCCCGTCT 59.890 50.000 0.00 0.00 0.00 4.18
5406 5869 5.067674 TCAACACCAAGAAGGATTTCACAAG 59.932 40.000 0.00 0.00 41.22 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.