Multiple sequence alignment - TraesCS4B01G259600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G259600 chr4B 100.000 5052 0 0 1 5052 526944286 526939235 0.000000e+00 9330.0
1 TraesCS4B01G259600 chr4B 88.591 596 47 9 2984 3572 457970748 457970167 0.000000e+00 704.0
2 TraesCS4B01G259600 chr4B 86.481 503 57 8 2479 2979 457980359 457979866 4.450000e-150 542.0
3 TraesCS4B01G259600 chr4A 94.298 2052 65 29 2481 4512 37814769 37812750 0.000000e+00 3094.0
4 TraesCS4B01G259600 chr4A 88.636 1144 73 22 718 1816 37816767 37815636 0.000000e+00 1339.0
5 TraesCS4B01G259600 chr4A 96.447 591 16 3 1895 2481 37815610 37815021 0.000000e+00 970.0
6 TraesCS4B01G259600 chr4A 87.687 268 25 5 1 267 37817511 37817251 6.350000e-79 305.0
7 TraesCS4B01G259600 chr4A 85.837 233 25 4 480 705 37817258 37817027 1.820000e-59 241.0
8 TraesCS4B01G259600 chr4A 85.294 204 24 5 280 479 607232275 607232476 6.630000e-49 206.0
9 TraesCS4B01G259600 chr4D 96.211 1689 45 10 2839 4520 428581154 428582830 0.000000e+00 2747.0
10 TraesCS4B01G259600 chr4D 89.938 1451 80 27 509 1919 428578702 428580126 0.000000e+00 1810.0
11 TraesCS4B01G259600 chr4D 95.425 765 24 4 2047 2810 428580139 428580893 0.000000e+00 1208.0
12 TraesCS4B01G259600 chr4D 89.306 533 32 8 4520 5050 428582932 428583441 0.000000e+00 645.0
13 TraesCS4B01G259600 chr4D 95.098 102 4 1 2808 2908 428581051 428581152 5.240000e-35 159.0
14 TraesCS4B01G259600 chr4D 93.220 59 3 1 193 251 428578552 428578609 9.010000e-13 86.1
15 TraesCS4B01G259600 chr1D 86.700 203 18 7 280 480 71764192 71763997 3.060000e-52 217.0
16 TraesCS4B01G259600 chr1B 85.854 205 16 9 280 479 413202426 413202622 6.630000e-49 206.0
17 TraesCS4B01G259600 chr3A 84.466 206 22 7 280 479 24029147 24028946 1.440000e-45 195.0
18 TraesCS4B01G259600 chr3A 83.482 224 20 13 267 479 699542305 699542522 5.160000e-45 193.0
19 TraesCS4B01G259600 chr3A 83.886 211 20 9 272 480 673581824 673582022 6.680000e-44 189.0
20 TraesCS4B01G259600 chr5A 84.466 206 17 12 280 479 632151006 632151202 6.680000e-44 189.0
21 TraesCS4B01G259600 chr7D 83.824 204 23 7 280 479 37852925 37852728 8.640000e-43 185.0
22 TraesCS4B01G259600 chr6B 83.099 213 20 12 275 479 664071390 664071186 4.020000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G259600 chr4B 526939235 526944286 5051 True 9330.000000 9330 100.000000 1 5052 1 chr4B.!!$R3 5051
1 TraesCS4B01G259600 chr4B 457970167 457970748 581 True 704.000000 704 88.591000 2984 3572 1 chr4B.!!$R1 588
2 TraesCS4B01G259600 chr4A 37812750 37817511 4761 True 1189.800000 3094 90.581000 1 4512 5 chr4A.!!$R1 4511
3 TraesCS4B01G259600 chr4D 428578552 428583441 4889 False 1109.183333 2747 93.199667 193 5050 6 chr4D.!!$F1 4857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.036010 CCGTGCTCCCACTTCATTCT 60.036 55.000 0.00 0.00 39.86 2.40 F
480 481 0.108898 CTCAGGCAAGTCTCGTCCAG 60.109 60.000 0.00 0.00 0.00 3.86 F
1638 2035 0.107945 CTACTCTGTTGCTGGCTCCC 60.108 60.000 0.00 0.00 0.00 4.30 F
1788 2189 0.454196 ACCGAACACAAACTGTTGCC 59.546 50.000 0.00 0.00 43.60 4.52 F
2657 3314 1.482955 CGTTCGACGTGTCAGCAAG 59.517 57.895 0.00 0.00 36.74 4.01 F
3685 4594 0.963962 AAGTCCATGCTTTGCTGTGG 59.036 50.000 7.77 7.77 36.74 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1960 0.743701 AAGGCATTGCTCAGCTCGAG 60.744 55.0 8.45 8.45 45.37 4.04 R
1833 2234 1.098712 TCCACCGTCAACAGTTTGGC 61.099 55.0 0.00 0.00 33.65 4.52 R
3425 4323 0.749649 AGAACTCGGCTCATAGGCAG 59.250 55.0 1.24 0.91 41.44 4.85 R
3426 4324 1.195115 AAGAACTCGGCTCATAGGCA 58.805 50.0 1.24 0.00 41.44 4.75 R
3850 4760 0.732571 CACCAACTGTCAGCGTGTTT 59.267 50.0 0.00 0.00 0.00 2.83 R
4699 5730 0.035739 AACGGCTGAATGGTACGGTT 59.964 50.0 0.00 0.00 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.715347 ACAAGTTTCAGTCCTTTAAGCAAT 57.285 33.333 0.00 0.00 0.00 3.56
29 30 6.507023 ACAAGTTTCAGTCCTTTAAGCAATG 58.493 36.000 0.00 0.00 0.00 2.82
32 33 2.083774 TCAGTCCTTTAAGCAATGCCG 58.916 47.619 0.00 0.00 0.00 5.69
34 35 0.179137 GTCCTTTAAGCAATGCCGCC 60.179 55.000 0.00 0.00 0.00 6.13
52 53 2.556287 GCTTCCGCTGAAACCACG 59.444 61.111 0.00 0.00 0.00 4.94
55 56 0.878523 CTTCCGCTGAAACCACGTCA 60.879 55.000 0.00 0.00 0.00 4.35
57 58 2.317609 CCGCTGAAACCACGTCAGG 61.318 63.158 3.69 0.00 42.36 3.86
70 71 2.485426 CACGTCAGGAACATGCTCAATT 59.515 45.455 0.00 0.00 0.00 2.32
75 76 4.697352 GTCAGGAACATGCTCAATTACTGT 59.303 41.667 5.42 0.00 35.98 3.55
80 81 4.668576 ACATGCTCAATTACTGTCGTTG 57.331 40.909 0.00 0.00 0.00 4.10
83 84 3.325870 TGCTCAATTACTGTCGTTGAGG 58.674 45.455 24.31 13.57 45.51 3.86
85 86 2.673368 CTCAATTACTGTCGTTGAGGCC 59.327 50.000 19.39 0.00 43.07 5.19
87 88 0.739813 ATTACTGTCGTTGAGGCCGC 60.740 55.000 0.00 0.00 0.00 6.53
89 90 2.089887 TACTGTCGTTGAGGCCGCAA 62.090 55.000 18.83 18.83 0.00 4.85
90 91 2.664851 TGTCGTTGAGGCCGCAAG 60.665 61.111 23.24 15.88 0.00 4.01
93 94 1.227704 TCGTTGAGGCCGCAAGAAA 60.228 52.632 23.24 8.05 43.02 2.52
94 95 1.082104 CGTTGAGGCCGCAAGAAAC 60.082 57.895 23.24 10.58 43.02 2.78
95 96 1.507141 CGTTGAGGCCGCAAGAAACT 61.507 55.000 23.24 0.00 43.02 2.66
105 106 1.544724 GCAAGAAACTGCCCCATGTA 58.455 50.000 0.00 0.00 36.25 2.29
108 109 3.699038 GCAAGAAACTGCCCCATGTAATA 59.301 43.478 0.00 0.00 36.25 0.98
110 111 3.898482 AGAAACTGCCCCATGTAATACC 58.102 45.455 0.00 0.00 0.00 2.73
111 112 3.268334 AGAAACTGCCCCATGTAATACCA 59.732 43.478 0.00 0.00 0.00 3.25
112 113 3.971468 AACTGCCCCATGTAATACCAT 57.029 42.857 0.00 0.00 0.00 3.55
124 125 5.216614 TGTAATACCATATTACAGCGCCA 57.783 39.130 14.54 0.00 38.95 5.69
137 138 1.069823 CAGCGCCACAAGATCCTCTAT 59.930 52.381 2.29 0.00 0.00 1.98
138 139 1.342819 AGCGCCACAAGATCCTCTATC 59.657 52.381 2.29 0.00 34.52 2.08
140 141 2.558795 GCGCCACAAGATCCTCTATCTA 59.441 50.000 0.00 0.00 44.56 1.98
141 142 3.194542 GCGCCACAAGATCCTCTATCTAT 59.805 47.826 0.00 0.00 44.56 1.98
143 144 5.105716 GCGCCACAAGATCCTCTATCTATAA 60.106 44.000 0.00 0.00 44.56 0.98
144 145 6.326375 CGCCACAAGATCCTCTATCTATAAC 58.674 44.000 0.00 0.00 44.56 1.89
145 146 6.626181 CGCCACAAGATCCTCTATCTATAACC 60.626 46.154 0.00 0.00 44.56 2.85
146 147 6.626181 GCCACAAGATCCTCTATCTATAACCG 60.626 46.154 0.00 0.00 44.56 4.44
153 154 8.110271 AGATCCTCTATCTATAACCGTGATCAA 58.890 37.037 0.00 0.00 43.45 2.57
185 186 4.091800 GCATCCACGTTGATCAAAATTTGG 59.908 41.667 10.35 13.46 0.00 3.28
278 279 4.883354 GGCCAGGGATCCGGCTTG 62.883 72.222 24.72 12.32 40.87 4.01
280 281 4.883354 CCAGGGATCCGGCTTGCC 62.883 72.222 5.45 0.72 0.00 4.52
281 282 3.801997 CAGGGATCCGGCTTGCCT 61.802 66.667 10.84 10.84 34.92 4.75
282 283 3.483869 AGGGATCCGGCTTGCCTC 61.484 66.667 10.84 0.65 26.83 4.70
283 284 4.570874 GGGATCCGGCTTGCCTCC 62.571 72.222 5.45 9.61 0.00 4.30
284 285 4.570874 GGATCCGGCTTGCCTCCC 62.571 72.222 10.12 2.02 0.00 4.30
285 286 4.570874 GATCCGGCTTGCCTCCCC 62.571 72.222 10.12 0.00 0.00 4.81
290 291 4.453892 GGCTTGCCTCCCCATGCT 62.454 66.667 4.11 0.00 36.47 3.79
291 292 2.832201 GCTTGCCTCCCCATGCTC 60.832 66.667 0.00 0.00 34.24 4.26
292 293 2.123982 CTTGCCTCCCCATGCTCC 60.124 66.667 0.00 0.00 0.00 4.70
293 294 3.728292 CTTGCCTCCCCATGCTCCC 62.728 68.421 0.00 0.00 0.00 4.30
295 296 3.505773 GCCTCCCCATGCTCCCAT 61.506 66.667 0.00 0.00 0.00 4.00
296 297 2.842058 CCTCCCCATGCTCCCATC 59.158 66.667 0.00 0.00 0.00 3.51
297 298 2.838467 CCTCCCCATGCTCCCATCC 61.838 68.421 0.00 0.00 0.00 3.51
298 299 3.170672 TCCCCATGCTCCCATCCG 61.171 66.667 0.00 0.00 0.00 4.18
299 300 3.492353 CCCCATGCTCCCATCCGT 61.492 66.667 0.00 0.00 0.00 4.69
300 301 2.203252 CCCATGCTCCCATCCGTG 60.203 66.667 0.00 0.00 0.00 4.94
301 302 2.903855 CCATGCTCCCATCCGTGC 60.904 66.667 0.00 0.00 0.00 5.34
302 303 2.191375 CATGCTCCCATCCGTGCT 59.809 61.111 0.00 0.00 0.00 4.40
303 304 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
304 305 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
305 306 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
306 307 3.083349 CTCCCATCCGTGCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
307 308 3.391665 CTCCCATCCGTGCTCCCAC 62.392 68.421 0.00 0.00 38.62 4.61
308 309 3.402681 CCCATCCGTGCTCCCACT 61.403 66.667 0.00 0.00 39.86 4.00
309 310 2.671070 CCATCCGTGCTCCCACTT 59.329 61.111 0.00 0.00 39.86 3.16
310 311 1.450312 CCATCCGTGCTCCCACTTC 60.450 63.158 0.00 0.00 39.86 3.01
311 312 1.296392 CATCCGTGCTCCCACTTCA 59.704 57.895 0.00 0.00 39.86 3.02
312 313 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
313 314 0.620556 ATCCGTGCTCCCACTTCATT 59.379 50.000 0.00 0.00 39.86 2.57
314 315 0.036388 TCCGTGCTCCCACTTCATTC 60.036 55.000 0.00 0.00 39.86 2.67
315 316 0.036010 CCGTGCTCCCACTTCATTCT 60.036 55.000 0.00 0.00 39.86 2.40
316 317 1.207089 CCGTGCTCCCACTTCATTCTA 59.793 52.381 0.00 0.00 39.86 2.10
317 318 2.158900 CCGTGCTCCCACTTCATTCTAT 60.159 50.000 0.00 0.00 39.86 1.98
318 319 2.868583 CGTGCTCCCACTTCATTCTATG 59.131 50.000 0.00 0.00 39.86 2.23
319 320 3.430790 CGTGCTCCCACTTCATTCTATGA 60.431 47.826 0.00 0.00 39.86 2.15
320 321 3.873952 GTGCTCCCACTTCATTCTATGAC 59.126 47.826 0.00 0.00 38.93 3.06
321 322 3.776969 TGCTCCCACTTCATTCTATGACT 59.223 43.478 0.00 0.00 39.39 3.41
322 323 4.125703 GCTCCCACTTCATTCTATGACTG 58.874 47.826 0.00 0.00 39.39 3.51
323 324 4.383552 GCTCCCACTTCATTCTATGACTGT 60.384 45.833 0.00 0.00 39.39 3.55
324 325 5.344743 TCCCACTTCATTCTATGACTGTC 57.655 43.478 0.00 0.00 39.39 3.51
325 326 5.026121 TCCCACTTCATTCTATGACTGTCT 58.974 41.667 9.51 0.00 39.39 3.41
326 327 5.485353 TCCCACTTCATTCTATGACTGTCTT 59.515 40.000 9.51 5.39 39.39 3.01
327 328 6.013379 TCCCACTTCATTCTATGACTGTCTTT 60.013 38.462 9.51 0.00 39.39 2.52
328 329 6.314896 CCCACTTCATTCTATGACTGTCTTTC 59.685 42.308 9.51 0.00 39.39 2.62
329 330 7.102346 CCACTTCATTCTATGACTGTCTTTCT 58.898 38.462 9.51 0.00 39.39 2.52
330 331 7.605691 CCACTTCATTCTATGACTGTCTTTCTT 59.394 37.037 9.51 0.00 39.39 2.52
331 332 8.655092 CACTTCATTCTATGACTGTCTTTCTTC 58.345 37.037 9.51 0.00 39.39 2.87
332 333 7.821846 ACTTCATTCTATGACTGTCTTTCTTCC 59.178 37.037 9.51 0.00 39.39 3.46
333 334 7.487822 TCATTCTATGACTGTCTTTCTTCCT 57.512 36.000 9.51 0.00 33.59 3.36
334 335 7.911651 TCATTCTATGACTGTCTTTCTTCCTT 58.088 34.615 9.51 0.00 33.59 3.36
335 336 8.378565 TCATTCTATGACTGTCTTTCTTCCTTT 58.621 33.333 9.51 0.00 33.59 3.11
336 337 9.007901 CATTCTATGACTGTCTTTCTTCCTTTT 57.992 33.333 9.51 0.00 0.00 2.27
337 338 8.980481 TTCTATGACTGTCTTTCTTCCTTTTT 57.020 30.769 9.51 0.00 0.00 1.94
360 361 7.823745 TTTCCTTTCTAATCTAATCATGGCC 57.176 36.000 0.00 0.00 0.00 5.36
361 362 6.770286 TCCTTTCTAATCTAATCATGGCCT 57.230 37.500 3.32 0.00 0.00 5.19
362 363 7.154191 TCCTTTCTAATCTAATCATGGCCTT 57.846 36.000 3.32 0.00 0.00 4.35
363 364 7.227156 TCCTTTCTAATCTAATCATGGCCTTC 58.773 38.462 3.32 0.00 0.00 3.46
364 365 6.432472 CCTTTCTAATCTAATCATGGCCTTCC 59.568 42.308 3.32 0.00 0.00 3.46
365 366 5.505181 TCTAATCTAATCATGGCCTTCCC 57.495 43.478 3.32 0.00 0.00 3.97
366 367 3.532641 AATCTAATCATGGCCTTCCCC 57.467 47.619 3.32 0.00 0.00 4.81
367 368 1.149101 TCTAATCATGGCCTTCCCCC 58.851 55.000 3.32 0.00 0.00 5.40
391 392 2.247358 CCCCCGATTTTAATGGGATGG 58.753 52.381 5.22 2.43 46.41 3.51
392 393 2.247358 CCCCGATTTTAATGGGATGGG 58.753 52.381 5.22 0.00 46.41 4.00
393 394 1.618343 CCCGATTTTAATGGGATGGGC 59.382 52.381 5.22 0.00 46.41 5.36
394 395 1.618343 CCGATTTTAATGGGATGGGCC 59.382 52.381 0.00 0.00 36.49 5.80
411 412 2.561733 GCCCGAGCCTTATTTTGTTC 57.438 50.000 0.00 0.00 0.00 3.18
412 413 1.134367 GCCCGAGCCTTATTTTGTTCC 59.866 52.381 0.00 0.00 0.00 3.62
413 414 2.442413 CCCGAGCCTTATTTTGTTCCA 58.558 47.619 0.00 0.00 0.00 3.53
414 415 2.823154 CCCGAGCCTTATTTTGTTCCAA 59.177 45.455 0.00 0.00 0.00 3.53
415 416 3.447229 CCCGAGCCTTATTTTGTTCCAAT 59.553 43.478 0.00 0.00 0.00 3.16
416 417 4.440112 CCCGAGCCTTATTTTGTTCCAATC 60.440 45.833 0.00 0.00 0.00 2.67
417 418 4.157656 CCGAGCCTTATTTTGTTCCAATCA 59.842 41.667 0.00 0.00 0.00 2.57
418 419 5.336372 CCGAGCCTTATTTTGTTCCAATCAA 60.336 40.000 0.00 0.00 0.00 2.57
419 420 6.155827 CGAGCCTTATTTTGTTCCAATCAAA 58.844 36.000 0.00 0.00 33.76 2.69
420 421 6.813152 CGAGCCTTATTTTGTTCCAATCAAAT 59.187 34.615 0.00 0.00 35.25 2.32
421 422 7.009540 CGAGCCTTATTTTGTTCCAATCAAATC 59.990 37.037 0.00 0.00 35.25 2.17
422 423 7.678837 AGCCTTATTTTGTTCCAATCAAATCA 58.321 30.769 0.00 0.00 35.25 2.57
423 424 8.156165 AGCCTTATTTTGTTCCAATCAAATCAA 58.844 29.630 0.00 0.00 35.25 2.57
424 425 8.445493 GCCTTATTTTGTTCCAATCAAATCAAG 58.555 33.333 0.00 0.00 35.25 3.02
425 426 8.445493 CCTTATTTTGTTCCAATCAAATCAAGC 58.555 33.333 0.00 0.00 35.25 4.01
426 427 6.806388 ATTTTGTTCCAATCAAATCAAGCC 57.194 33.333 0.00 0.00 35.25 4.35
427 428 3.574284 TGTTCCAATCAAATCAAGCCG 57.426 42.857 0.00 0.00 0.00 5.52
428 429 2.890311 TGTTCCAATCAAATCAAGCCGT 59.110 40.909 0.00 0.00 0.00 5.68
429 430 4.075682 TGTTCCAATCAAATCAAGCCGTA 58.924 39.130 0.00 0.00 0.00 4.02
430 431 4.083003 TGTTCCAATCAAATCAAGCCGTAC 60.083 41.667 0.00 0.00 0.00 3.67
431 432 2.675844 TCCAATCAAATCAAGCCGTACG 59.324 45.455 8.69 8.69 0.00 3.67
432 433 2.440501 CAATCAAATCAAGCCGTACGC 58.559 47.619 10.49 5.63 37.98 4.42
433 434 0.650512 ATCAAATCAAGCCGTACGCG 59.349 50.000 10.49 3.53 44.76 6.01
471 472 4.335647 CGTGGGGCTCAGGCAAGT 62.336 66.667 0.00 0.00 40.87 3.16
472 473 2.360475 GTGGGGCTCAGGCAAGTC 60.360 66.667 0.00 0.00 40.87 3.01
473 474 2.530151 TGGGGCTCAGGCAAGTCT 60.530 61.111 0.00 0.00 40.87 3.24
474 475 2.270527 GGGGCTCAGGCAAGTCTC 59.729 66.667 0.00 0.00 40.87 3.36
475 476 2.125350 GGGCTCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 40.87 4.04
476 477 2.659610 GGCTCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 40.87 4.18
477 478 1.446966 GGCTCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 40.87 4.20
478 479 1.446966 GCTCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 38.54 4.79
479 480 1.967535 CTCAGGCAAGTCTCGTCCA 59.032 57.895 0.00 0.00 0.00 4.02
480 481 0.108898 CTCAGGCAAGTCTCGTCCAG 60.109 60.000 0.00 0.00 0.00 3.86
481 482 1.739562 CAGGCAAGTCTCGTCCAGC 60.740 63.158 0.00 0.00 0.00 4.85
482 483 2.811317 GGCAAGTCTCGTCCAGCG 60.811 66.667 0.00 0.00 43.01 5.18
483 484 2.811317 GCAAGTCTCGTCCAGCGG 60.811 66.667 0.00 0.00 41.72 5.52
510 511 3.257627 TGGACCTCTGGACCAGTTT 57.742 52.632 21.06 6.67 42.08 2.66
528 529 1.063070 TTGTCTTGGGGGTAGCACCA 61.063 55.000 13.09 13.09 41.02 4.17
537 538 2.508300 GGGGGTAGCACCATTTCTTCTA 59.492 50.000 8.76 0.00 41.02 2.10
550 633 8.184192 CACCATTTCTTCTATTACAACACATCC 58.816 37.037 0.00 0.00 0.00 3.51
569 652 2.114323 TCCCCTCTGCCACCATAGATAT 59.886 50.000 0.00 0.00 0.00 1.63
571 654 2.167281 CCCTCTGCCACCATAGATATCG 59.833 54.545 0.00 0.00 0.00 2.92
573 656 2.828520 CTCTGCCACCATAGATATCGGT 59.171 50.000 0.00 0.00 0.00 4.69
592 675 4.040376 CGGTAAGTGGTCGCTACTATTTC 58.960 47.826 0.00 0.00 0.00 2.17
599 682 5.185249 AGTGGTCGCTACTATTTCTGAGAAA 59.815 40.000 10.39 10.39 0.00 2.52
607 690 7.489435 CGCTACTATTTCTGAGAAATGAACTGA 59.511 37.037 26.11 7.92 0.00 3.41
612 695 6.486253 TTTCTGAGAAATGAACTGATTCCG 57.514 37.500 3.02 0.00 33.49 4.30
630 714 6.765989 TGATTCCGTATAAGGATTTGACAAGG 59.234 38.462 8.31 0.00 40.48 3.61
645 729 5.029807 TGACAAGGTGAGTCACATAACAA 57.970 39.130 24.20 3.44 40.80 2.83
648 732 5.300752 ACAAGGTGAGTCACATAACAAGAG 58.699 41.667 24.20 6.22 35.86 2.85
666 756 1.329906 GAGCATCGAGTTCATGCCAAG 59.670 52.381 4.38 0.00 46.76 3.61
667 757 1.089920 GCATCGAGTTCATGCCAAGT 58.910 50.000 0.00 0.00 40.79 3.16
706 1052 3.463048 AAGGTGCCCTTTCATTCTCAT 57.537 42.857 0.99 0.00 41.69 2.90
719 1065 5.395682 TCATTCTCATGCCAAAAAGGAAG 57.604 39.130 0.00 0.00 41.22 3.46
749 1095 1.531149 AGAACAAGATTCGGTGCGTTG 59.469 47.619 0.00 0.00 0.00 4.10
1071 1429 1.133419 GGTACCTACCTCTCCTCCCTG 60.133 61.905 4.06 0.00 43.10 4.45
1072 1430 1.570024 GTACCTACCTCTCCTCCCTGT 59.430 57.143 0.00 0.00 0.00 4.00
1085 1454 1.611851 CCCTGTCCTCCTCTGCACT 60.612 63.158 0.00 0.00 0.00 4.40
1110 1480 5.278957 GCATCTCCTCTCTCTAATCTGTTCC 60.279 48.000 0.00 0.00 0.00 3.62
1118 1488 4.200874 TCTCTAATCTGTTCCTCGGTCTC 58.799 47.826 0.00 0.00 0.00 3.36
1266 1637 1.224075 CGGCTCGATTTGATGATGCT 58.776 50.000 0.00 0.00 0.00 3.79
1300 1683 5.331309 CGCATGTTTTACGATCTAGTTACCG 60.331 44.000 0.00 0.00 0.00 4.02
1352 1735 0.252239 ATTGGGCTCCTGGGTTTTCC 60.252 55.000 0.00 0.00 39.75 3.13
1370 1753 1.239968 CCAGCACTCCTGTTTGCTCC 61.240 60.000 0.00 0.00 46.31 4.70
1380 1766 1.019278 TGTTTGCTCCGAATCTCCGC 61.019 55.000 0.00 0.00 0.00 5.54
1450 1840 2.035674 CGTGCGCTTCGTACTCTTATTG 60.036 50.000 9.73 0.00 40.08 1.90
1466 1863 1.171308 ATTGTGTGCTAGCTGCTTGG 58.829 50.000 17.23 2.50 43.37 3.61
1467 1864 0.179020 TTGTGTGCTAGCTGCTTGGT 60.179 50.000 17.23 0.00 43.37 3.67
1468 1865 0.886043 TGTGTGCTAGCTGCTTGGTG 60.886 55.000 17.23 0.00 43.37 4.17
1469 1866 1.968017 TGTGCTAGCTGCTTGGTGC 60.968 57.895 17.23 8.46 43.37 5.01
1486 1883 3.642078 CGTAGCCTGATGGGGGAA 58.358 61.111 0.00 0.00 35.12 3.97
1487 1884 1.447643 CGTAGCCTGATGGGGGAAG 59.552 63.158 0.00 0.00 35.12 3.46
1563 1960 1.682344 GGGGGAACAAGGCCATCAC 60.682 63.158 5.01 0.00 0.00 3.06
1638 2035 0.107945 CTACTCTGTTGCTGGCTCCC 60.108 60.000 0.00 0.00 0.00 4.30
1682 2079 6.159988 CCCTTTTTACGAATGGTTATGCAAA 58.840 36.000 0.00 0.00 0.00 3.68
1684 2081 7.333174 CCCTTTTTACGAATGGTTATGCAAATT 59.667 33.333 0.00 0.00 0.00 1.82
1745 2146 6.468543 TGGGTTTTGGAATTAATTAAGGCAC 58.531 36.000 0.00 0.00 0.00 5.01
1746 2147 6.043243 TGGGTTTTGGAATTAATTAAGGCACA 59.957 34.615 0.00 0.00 0.00 4.57
1765 2166 2.288886 ACACGCTTAGTTTCCAGGACTC 60.289 50.000 0.00 0.00 0.00 3.36
1781 2182 2.287103 GGACTCAAGACCGAACACAAAC 59.713 50.000 0.00 0.00 0.00 2.93
1788 2189 0.454196 ACCGAACACAAACTGTTGCC 59.546 50.000 0.00 0.00 43.60 4.52
1795 2196 4.943142 ACACAAACTGTTGCCAATTTTG 57.057 36.364 0.00 7.29 38.39 2.44
1847 2248 1.826327 CACTTGCCAAACTGTTGACG 58.174 50.000 0.00 0.00 36.83 4.35
1858 2259 2.218603 ACTGTTGACGGTGGAATTGTC 58.781 47.619 0.00 0.00 33.47 3.18
1887 2288 8.037758 ACCAACACAAATATTGTTCTTGTTTGA 58.962 29.630 0.00 0.00 43.23 2.69
1922 2323 4.647964 CGTTGACACTTTGCATATACACC 58.352 43.478 0.00 0.00 0.00 4.16
1948 2349 3.953612 TGGCCTATACAATTGCTTCTTGG 59.046 43.478 3.32 2.15 0.00 3.61
1961 2362 2.818432 GCTTCTTGGGATGATGGCTATG 59.182 50.000 0.00 0.00 0.00 2.23
1963 2364 2.421725 TCTTGGGATGATGGCTATGGT 58.578 47.619 0.00 0.00 0.00 3.55
1995 2396 7.676683 TTCTTCTAGGATAAATACAGGCTGT 57.323 36.000 25.34 25.34 0.00 4.40
2002 2403 5.104527 AGGATAAATACAGGCTGTTGCTACA 60.105 40.000 27.24 6.74 39.59 2.74
2005 2406 5.782893 AAATACAGGCTGTTGCTACAAAA 57.217 34.783 27.24 4.22 39.59 2.44
2020 2421 5.468746 TGCTACAAAAGTTAAATGCTCGTCT 59.531 36.000 0.00 0.00 0.00 4.18
2342 2747 5.858049 TCATTAGCTTGTTCTTTCAAATGCG 59.142 36.000 0.00 0.00 0.00 4.73
2397 2802 3.195396 AGACAAACACTGTTTGCCATGTT 59.805 39.130 27.43 12.22 38.84 2.71
2657 3314 1.482955 CGTTCGACGTGTCAGCAAG 59.517 57.895 0.00 0.00 36.74 4.01
2689 3346 9.494271 GTTCTCATGATAAGCAATTATCCACTA 57.506 33.333 0.00 0.00 33.97 2.74
2991 3883 6.079712 ACCCTTTGCCTGATTCTTACTAAT 57.920 37.500 0.00 0.00 0.00 1.73
3062 3955 9.651913 TCTGAATTTATTTGCCTTTAATGAACC 57.348 29.630 0.00 0.00 0.00 3.62
3236 4129 9.620259 AATACTCAGATTTATGTTTTCCCTCTC 57.380 33.333 0.00 0.00 0.00 3.20
3244 4142 4.657814 ATGTTTTCCCTCTCTTAAGCCA 57.342 40.909 0.00 0.00 0.00 4.75
3424 4322 2.237143 TGGAGTGGAAACAGCCTATGAG 59.763 50.000 0.00 0.00 44.46 2.90
3425 4323 2.284190 GAGTGGAAACAGCCTATGAGC 58.716 52.381 0.00 0.00 44.46 4.26
3426 4324 1.912043 AGTGGAAACAGCCTATGAGCT 59.088 47.619 0.00 0.00 46.45 4.09
3434 4332 2.021262 AGCCTATGAGCTGCCTATGA 57.979 50.000 0.00 0.00 42.95 2.15
3685 4594 0.963962 AAGTCCATGCTTTGCTGTGG 59.036 50.000 7.77 7.77 36.74 4.17
3735 4645 7.741027 AGCATTGATTGATAGATTACACCTG 57.259 36.000 0.00 0.00 0.00 4.00
3850 4760 1.864711 CGGAAGCTCTCAACAAACGAA 59.135 47.619 0.00 0.00 0.00 3.85
3856 4766 2.776225 GCTCTCAACAAACGAAAACACG 59.224 45.455 0.00 0.00 39.31 4.49
4052 4962 0.601311 ACTCGCACTCAAGCCTTGAC 60.601 55.000 2.24 0.00 35.46 3.18
4209 5125 2.702270 AGGCCTTCACCTGGATTTTT 57.298 45.000 0.00 0.00 39.13 1.94
4259 5176 7.502561 TCGAAGTACTTCCTCATTGATAGATGA 59.497 37.037 26.12 11.72 36.27 2.92
4272 5190 6.519679 TTGATAGATGAATGCAGCTTGTTT 57.480 33.333 0.00 0.00 37.52 2.83
4299 5217 2.229302 ACTGTGAGTTCCGAGTAGCTTC 59.771 50.000 0.00 0.00 0.00 3.86
4317 5235 4.097589 AGCTTCCACGGTAGTATGTTACTC 59.902 45.833 0.00 0.00 40.14 2.59
4355 5277 3.724508 TTTTCATGCGGTGTTGATTGT 57.275 38.095 0.00 0.00 0.00 2.71
4385 5307 4.493220 CGCTAGTTGAGATTTACTGCTTGC 60.493 45.833 0.00 0.00 0.00 4.01
4397 5319 1.159285 CTGCTTGCTCGGATGTCAAA 58.841 50.000 0.00 0.00 0.00 2.69
4443 5369 4.073293 TCTTCTTGCGGAGTCTCTTTTT 57.927 40.909 0.00 0.00 0.00 1.94
4507 5436 7.687941 ATATTGGCGATAAGGATTTAGTTGG 57.312 36.000 0.00 0.00 0.00 3.77
4546 5577 3.693578 TGTGAAAGCAAATGTGTGACTGA 59.306 39.130 0.00 0.00 0.00 3.41
4571 5602 3.119708 AGCATTCAAGCCTTCATTTCGTC 60.120 43.478 0.00 0.00 34.23 4.20
4579 5610 2.096496 GCCTTCATTTCGTCCAGTCATG 59.904 50.000 0.00 0.00 0.00 3.07
4581 5612 3.753272 CCTTCATTTCGTCCAGTCATGTT 59.247 43.478 0.00 0.00 0.00 2.71
4583 5614 5.278463 CCTTCATTTCGTCCAGTCATGTTTT 60.278 40.000 0.00 0.00 0.00 2.43
4587 5618 1.202758 TCGTCCAGTCATGTTTTGCCT 60.203 47.619 0.00 0.00 0.00 4.75
4650 5681 6.036300 TCGTATTTTGTTTATCGGTGGATCAC 59.964 38.462 0.00 0.00 34.00 3.06
4656 5687 3.596310 TTATCGGTGGATCACGTCAAA 57.404 42.857 0.00 0.00 34.83 2.69
4658 5689 2.242047 TCGGTGGATCACGTCAAAAA 57.758 45.000 0.00 0.00 34.83 1.94
4678 5709 6.859420 AAAAACTATGATTTGTGTTTGGGC 57.141 33.333 0.00 0.00 33.61 5.36
4679 5710 3.848272 ACTATGATTTGTGTTTGGGCG 57.152 42.857 0.00 0.00 0.00 6.13
4680 5711 2.094752 ACTATGATTTGTGTTTGGGCGC 60.095 45.455 0.00 0.00 0.00 6.53
4681 5712 0.388391 ATGATTTGTGTTTGGGCGCG 60.388 50.000 0.00 0.00 0.00 6.86
4682 5713 1.284408 GATTTGTGTTTGGGCGCGA 59.716 52.632 12.10 0.00 0.00 5.87
4684 5715 2.414840 ATTTGTGTTTGGGCGCGACC 62.415 55.000 28.46 28.46 37.93 4.79
4685 5716 4.555709 TGTGTTTGGGCGCGACCT 62.556 61.111 34.65 0.00 39.10 3.85
4699 5730 3.554324 GCGCGACCTAAACTTTGATATCA 59.446 43.478 12.10 0.00 0.00 2.15
4710 5741 7.696992 AAACTTTGATATCAACCGTACCATT 57.303 32.000 17.76 6.74 35.28 3.16
4719 5750 0.896923 ACCGTACCATTCAGCCGTTA 59.103 50.000 0.00 0.00 0.00 3.18
4720 5751 1.275856 ACCGTACCATTCAGCCGTTAA 59.724 47.619 0.00 0.00 0.00 2.01
4721 5752 1.931172 CCGTACCATTCAGCCGTTAAG 59.069 52.381 0.00 0.00 0.00 1.85
4737 5768 7.011389 CAGCCGTTAAGAAAGATTATCATCACA 59.989 37.037 0.00 0.00 0.00 3.58
4747 5778 9.853555 GAAAGATTATCATCACATAGATCGAGT 57.146 33.333 0.00 0.00 33.72 4.18
4756 5787 6.280855 TCACATAGATCGAGTCAGGAAAAA 57.719 37.500 0.00 0.00 0.00 1.94
4757 5788 6.878317 TCACATAGATCGAGTCAGGAAAAAT 58.122 36.000 0.00 0.00 0.00 1.82
4758 5789 6.758416 TCACATAGATCGAGTCAGGAAAAATG 59.242 38.462 0.00 0.00 0.00 2.32
4759 5790 5.525378 ACATAGATCGAGTCAGGAAAAATGC 59.475 40.000 0.00 0.00 0.00 3.56
4760 5791 3.942829 AGATCGAGTCAGGAAAAATGCA 58.057 40.909 0.00 0.00 0.00 3.96
4761 5792 3.686726 AGATCGAGTCAGGAAAAATGCAC 59.313 43.478 0.00 0.00 0.00 4.57
4763 5794 3.210227 TCGAGTCAGGAAAAATGCACAA 58.790 40.909 0.00 0.00 0.00 3.33
4764 5795 3.250762 TCGAGTCAGGAAAAATGCACAAG 59.749 43.478 0.00 0.00 0.00 3.16
4765 5796 3.311966 GAGTCAGGAAAAATGCACAAGC 58.688 45.455 0.00 0.00 42.57 4.01
4766 5797 2.053627 GTCAGGAAAAATGCACAAGCG 58.946 47.619 0.00 0.00 46.23 4.68
4767 5798 1.680735 TCAGGAAAAATGCACAAGCGT 59.319 42.857 0.00 0.00 46.23 5.07
4768 5799 1.788308 CAGGAAAAATGCACAAGCGTG 59.212 47.619 0.00 0.00 46.23 5.34
4776 5807 3.276091 CACAAGCGTGCCAACCGA 61.276 61.111 0.00 0.00 36.06 4.69
4797 5828 4.304110 GAAACGTGACTCTGATACCACAA 58.696 43.478 0.00 0.00 0.00 3.33
4798 5829 4.330944 AACGTGACTCTGATACCACAAA 57.669 40.909 0.00 0.00 0.00 2.83
4799 5830 3.650139 ACGTGACTCTGATACCACAAAC 58.350 45.455 0.00 0.00 0.00 2.93
4800 5831 3.321111 ACGTGACTCTGATACCACAAACT 59.679 43.478 0.00 0.00 0.00 2.66
4801 5832 3.675225 CGTGACTCTGATACCACAAACTG 59.325 47.826 0.00 0.00 0.00 3.16
4802 5833 4.558697 CGTGACTCTGATACCACAAACTGA 60.559 45.833 0.00 0.00 0.00 3.41
4803 5834 5.297547 GTGACTCTGATACCACAAACTGAA 58.702 41.667 0.00 0.00 0.00 3.02
4804 5835 5.758296 GTGACTCTGATACCACAAACTGAAA 59.242 40.000 0.00 0.00 0.00 2.69
4805 5836 5.991606 TGACTCTGATACCACAAACTGAAAG 59.008 40.000 0.00 0.00 42.29 2.62
4806 5837 6.174720 ACTCTGATACCACAAACTGAAAGA 57.825 37.500 0.00 0.00 37.43 2.52
4807 5838 6.591935 ACTCTGATACCACAAACTGAAAGAA 58.408 36.000 0.00 0.00 37.43 2.52
4808 5839 7.054124 ACTCTGATACCACAAACTGAAAGAAA 58.946 34.615 0.00 0.00 37.43 2.52
4839 5870 3.336122 GATGATCCATCCACCAGGC 57.664 57.895 0.00 0.00 35.07 4.85
4850 5881 3.314331 ACCAGGCCACCACTCTCG 61.314 66.667 5.01 0.00 0.00 4.04
4855 5886 2.821366 GCCACCACTCTCGCATGG 60.821 66.667 0.00 0.00 42.13 3.66
4859 5890 0.531532 CACCACTCTCGCATGGGATC 60.532 60.000 13.45 0.00 40.59 3.36
4876 5907 6.235231 TGGGATCCTTATAATTATCTCGCC 57.765 41.667 12.58 0.00 0.00 5.54
4900 5932 3.550437 ACCACTTGTATCCTGATGCTC 57.450 47.619 0.00 0.00 0.00 4.26
5017 6049 9.740239 CATAAGAAATTTTATATGCTGCTGTGT 57.260 29.630 0.00 0.00 0.00 3.72
5036 6068 7.929245 TGCTGTGTATCTTTACAAGTACTTTCA 59.071 33.333 5.07 0.00 39.96 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.697352 ACAGTAATTGAGCATGTTCCTGAC 59.303 41.667 15.90 4.76 0.00 3.51
55 56 3.935203 CGACAGTAATTGAGCATGTTCCT 59.065 43.478 7.13 0.00 0.00 3.36
57 58 4.928661 ACGACAGTAATTGAGCATGTTC 57.071 40.909 2.05 2.05 0.00 3.18
70 71 2.089887 TTGCGGCCTCAACGACAGTA 62.090 55.000 3.44 0.00 0.00 2.74
75 76 1.227704 TTTCTTGCGGCCTCAACGA 60.228 52.632 3.44 3.91 0.00 3.85
80 81 2.563427 GCAGTTTCTTGCGGCCTC 59.437 61.111 0.00 0.00 33.90 4.70
83 84 4.056125 GGGGCAGTTTCTTGCGGC 62.056 66.667 0.00 0.00 45.00 6.53
85 86 1.213537 CATGGGGCAGTTTCTTGCG 59.786 57.895 0.00 0.00 45.00 4.85
87 88 4.097892 GGTATTACATGGGGCAGTTTCTTG 59.902 45.833 0.00 0.00 0.00 3.02
89 90 3.268334 TGGTATTACATGGGGCAGTTTCT 59.732 43.478 0.00 0.00 0.00 2.52
90 91 3.626930 TGGTATTACATGGGGCAGTTTC 58.373 45.455 0.00 0.00 0.00 2.78
93 94 5.599048 AATATGGTATTACATGGGGCAGT 57.401 39.130 0.00 0.00 32.39 4.40
94 95 6.480763 TGTAATATGGTATTACATGGGGCAG 58.519 40.000 15.08 0.00 38.95 4.85
95 96 6.455690 TGTAATATGGTATTACATGGGGCA 57.544 37.500 15.08 0.00 38.95 5.36
105 106 4.079980 TGTGGCGCTGTAATATGGTATT 57.920 40.909 7.64 0.00 0.00 1.89
108 109 2.093181 TCTTGTGGCGCTGTAATATGGT 60.093 45.455 7.64 0.00 0.00 3.55
110 111 3.187227 GGATCTTGTGGCGCTGTAATATG 59.813 47.826 7.64 0.00 0.00 1.78
111 112 3.071602 AGGATCTTGTGGCGCTGTAATAT 59.928 43.478 7.64 0.00 0.00 1.28
112 113 2.434336 AGGATCTTGTGGCGCTGTAATA 59.566 45.455 7.64 0.00 0.00 0.98
153 154 2.890311 TCAACGTGGATGCCTCATTTTT 59.110 40.909 0.00 0.00 0.00 1.94
169 170 2.412770 GCTGGCCAAATTTTGATCAACG 59.587 45.455 7.01 0.00 0.00 4.10
197 198 1.490490 AGACTGAACCAGTGGAGCAAA 59.510 47.619 18.40 0.00 45.44 3.68
263 264 4.883354 GGCAAGCCGGATCCCTGG 62.883 72.222 5.05 3.44 41.93 4.45
264 265 3.764160 GAGGCAAGCCGGATCCCTG 62.764 68.421 15.72 0.74 41.95 4.45
265 266 3.483869 GAGGCAAGCCGGATCCCT 61.484 66.667 5.05 8.98 41.95 4.20
266 267 4.570874 GGAGGCAAGCCGGATCCC 62.571 72.222 5.05 2.74 41.95 3.85
267 268 4.570874 GGGAGGCAAGCCGGATCC 62.571 72.222 5.05 0.00 41.95 3.36
268 269 4.570874 GGGGAGGCAAGCCGGATC 62.571 72.222 5.05 0.00 41.95 3.36
273 274 4.453892 AGCATGGGGAGGCAAGCC 62.454 66.667 2.02 2.02 0.00 4.35
274 275 2.832201 GAGCATGGGGAGGCAAGC 60.832 66.667 0.00 0.00 0.00 4.01
275 276 2.123982 GGAGCATGGGGAGGCAAG 60.124 66.667 0.00 0.00 0.00 4.01
276 277 3.743017 GGGAGCATGGGGAGGCAA 61.743 66.667 0.00 0.00 0.00 4.52
278 279 3.504204 GATGGGAGCATGGGGAGGC 62.504 68.421 0.00 0.00 0.00 4.70
279 280 2.838467 GGATGGGAGCATGGGGAGG 61.838 68.421 0.00 0.00 0.00 4.30
280 281 2.842058 GGATGGGAGCATGGGGAG 59.158 66.667 0.00 0.00 0.00 4.30
281 282 3.170672 CGGATGGGAGCATGGGGA 61.171 66.667 0.00 0.00 0.00 4.81
282 283 3.492353 ACGGATGGGAGCATGGGG 61.492 66.667 0.00 0.00 0.00 4.96
283 284 2.203252 CACGGATGGGAGCATGGG 60.203 66.667 0.00 0.00 0.00 4.00
284 285 2.903855 GCACGGATGGGAGCATGG 60.904 66.667 0.00 0.00 0.00 3.66
285 286 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
286 287 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
287 288 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
288 289 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
289 290 3.083349 TGGGAGCACGGATGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
290 291 3.399181 GTGGGAGCACGGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
291 292 2.876368 GAAGTGGGAGCACGGATGGG 62.876 65.000 0.00 0.00 0.00 4.00
292 293 1.450312 GAAGTGGGAGCACGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
293 294 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
294 295 0.620556 AATGAAGTGGGAGCACGGAT 59.379 50.000 0.00 0.00 0.00 4.18
295 296 0.036388 GAATGAAGTGGGAGCACGGA 60.036 55.000 0.00 0.00 0.00 4.69
296 297 0.036010 AGAATGAAGTGGGAGCACGG 60.036 55.000 0.00 0.00 0.00 4.94
297 298 2.672961 TAGAATGAAGTGGGAGCACG 57.327 50.000 0.00 0.00 0.00 5.34
298 299 3.873952 GTCATAGAATGAAGTGGGAGCAC 59.126 47.826 0.00 0.00 41.69 4.40
299 300 3.776969 AGTCATAGAATGAAGTGGGAGCA 59.223 43.478 0.00 0.00 41.69 4.26
300 301 4.125703 CAGTCATAGAATGAAGTGGGAGC 58.874 47.826 0.00 0.00 41.69 4.70
301 302 5.128499 AGACAGTCATAGAATGAAGTGGGAG 59.872 44.000 2.66 0.00 41.69 4.30
302 303 5.026121 AGACAGTCATAGAATGAAGTGGGA 58.974 41.667 2.66 0.00 41.69 4.37
303 304 5.350504 AGACAGTCATAGAATGAAGTGGG 57.649 43.478 2.66 0.00 41.69 4.61
304 305 7.102346 AGAAAGACAGTCATAGAATGAAGTGG 58.898 38.462 2.66 0.00 41.69 4.00
305 306 8.545229 AAGAAAGACAGTCATAGAATGAAGTG 57.455 34.615 2.66 1.58 41.69 3.16
306 307 7.821846 GGAAGAAAGACAGTCATAGAATGAAGT 59.178 37.037 2.66 0.00 41.69 3.01
307 308 8.040132 AGGAAGAAAGACAGTCATAGAATGAAG 58.960 37.037 2.66 0.00 41.69 3.02
308 309 7.911651 AGGAAGAAAGACAGTCATAGAATGAA 58.088 34.615 2.66 0.00 41.69 2.57
309 310 7.487822 AGGAAGAAAGACAGTCATAGAATGA 57.512 36.000 2.66 0.00 36.84 2.57
310 311 8.558973 AAAGGAAGAAAGACAGTCATAGAATG 57.441 34.615 2.66 0.00 33.62 2.67
311 312 9.579932 AAAAAGGAAGAAAGACAGTCATAGAAT 57.420 29.630 2.66 0.00 0.00 2.40
312 313 8.980481 AAAAAGGAAGAAAGACAGTCATAGAA 57.020 30.769 2.66 0.00 0.00 2.10
334 335 8.695456 GGCCATGATTAGATTAGAAAGGAAAAA 58.305 33.333 0.00 0.00 0.00 1.94
335 336 8.061304 AGGCCATGATTAGATTAGAAAGGAAAA 58.939 33.333 5.01 0.00 0.00 2.29
336 337 7.586349 AGGCCATGATTAGATTAGAAAGGAAA 58.414 34.615 5.01 0.00 0.00 3.13
337 338 7.154191 AGGCCATGATTAGATTAGAAAGGAA 57.846 36.000 5.01 0.00 0.00 3.36
338 339 6.770286 AGGCCATGATTAGATTAGAAAGGA 57.230 37.500 5.01 0.00 0.00 3.36
339 340 6.432472 GGAAGGCCATGATTAGATTAGAAAGG 59.568 42.308 5.01 0.00 0.00 3.11
340 341 6.432472 GGGAAGGCCATGATTAGATTAGAAAG 59.568 42.308 5.01 0.00 35.15 2.62
341 342 6.306987 GGGAAGGCCATGATTAGATTAGAAA 58.693 40.000 5.01 0.00 35.15 2.52
342 343 5.222130 GGGGAAGGCCATGATTAGATTAGAA 60.222 44.000 5.01 0.00 35.15 2.10
343 344 4.289672 GGGGAAGGCCATGATTAGATTAGA 59.710 45.833 5.01 0.00 35.15 2.10
344 345 4.568592 GGGGGAAGGCCATGATTAGATTAG 60.569 50.000 5.01 0.00 35.15 1.73
345 346 3.333680 GGGGGAAGGCCATGATTAGATTA 59.666 47.826 5.01 0.00 35.15 1.75
346 347 2.110721 GGGGGAAGGCCATGATTAGATT 59.889 50.000 5.01 0.00 35.15 2.40
347 348 1.713078 GGGGGAAGGCCATGATTAGAT 59.287 52.381 5.01 0.00 35.15 1.98
348 349 1.149101 GGGGGAAGGCCATGATTAGA 58.851 55.000 5.01 0.00 35.15 2.10
349 350 3.753787 GGGGGAAGGCCATGATTAG 57.246 57.895 5.01 0.00 35.15 1.73
371 372 2.247358 CCATCCCATTAAAATCGGGGG 58.753 52.381 0.00 0.00 41.11 5.40
372 373 2.247358 CCCATCCCATTAAAATCGGGG 58.753 52.381 0.00 0.00 40.68 5.73
373 374 1.618343 GCCCATCCCATTAAAATCGGG 59.382 52.381 0.00 0.00 41.76 5.14
374 375 1.618343 GGCCCATCCCATTAAAATCGG 59.382 52.381 0.00 0.00 0.00 4.18
392 393 1.134367 GGAACAAAATAAGGCTCGGGC 59.866 52.381 0.00 0.00 37.82 6.13
393 394 2.442413 TGGAACAAAATAAGGCTCGGG 58.558 47.619 0.00 0.00 31.92 5.14
407 408 2.890311 ACGGCTTGATTTGATTGGAACA 59.110 40.909 0.00 0.00 0.00 3.18
408 409 3.575965 ACGGCTTGATTTGATTGGAAC 57.424 42.857 0.00 0.00 0.00 3.62
409 410 3.126171 CGTACGGCTTGATTTGATTGGAA 59.874 43.478 7.57 0.00 0.00 3.53
410 411 2.675844 CGTACGGCTTGATTTGATTGGA 59.324 45.455 7.57 0.00 0.00 3.53
411 412 2.791158 GCGTACGGCTTGATTTGATTGG 60.791 50.000 18.39 0.00 39.11 3.16
412 413 2.440501 GCGTACGGCTTGATTTGATTG 58.559 47.619 18.39 0.00 39.11 2.67
413 414 1.062002 CGCGTACGGCTTGATTTGATT 59.938 47.619 18.39 0.00 40.44 2.57
414 415 0.650512 CGCGTACGGCTTGATTTGAT 59.349 50.000 18.39 0.00 40.44 2.57
415 416 2.074942 CGCGTACGGCTTGATTTGA 58.925 52.632 18.39 0.00 40.44 2.69
416 417 4.643675 CGCGTACGGCTTGATTTG 57.356 55.556 18.39 0.00 40.44 2.32
427 428 4.203076 ATCCGTGCTCCCGCGTAC 62.203 66.667 4.92 0.00 43.11 3.67
428 429 4.201679 CATCCGTGCTCCCGCGTA 62.202 66.667 4.92 0.00 43.11 4.42
454 455 4.335647 ACTTGCCTGAGCCCCACG 62.336 66.667 0.00 0.00 38.69 4.94
455 456 2.360475 GACTTGCCTGAGCCCCAC 60.360 66.667 0.00 0.00 38.69 4.61
456 457 2.530151 AGACTTGCCTGAGCCCCA 60.530 61.111 0.00 0.00 38.69 4.96
457 458 2.270527 GAGACTTGCCTGAGCCCC 59.729 66.667 0.00 0.00 38.69 5.80
458 459 2.125350 CGAGACTTGCCTGAGCCC 60.125 66.667 0.00 0.00 38.69 5.19
459 460 1.446966 GACGAGACTTGCCTGAGCC 60.447 63.158 0.00 0.00 38.69 4.70
460 461 1.446966 GGACGAGACTTGCCTGAGC 60.447 63.158 0.00 0.00 40.48 4.26
461 462 0.108898 CTGGACGAGACTTGCCTGAG 60.109 60.000 0.00 0.00 0.00 3.35
462 463 1.967535 CTGGACGAGACTTGCCTGA 59.032 57.895 0.00 0.00 0.00 3.86
463 464 1.739562 GCTGGACGAGACTTGCCTG 60.740 63.158 0.00 5.61 0.00 4.85
464 465 2.659610 GCTGGACGAGACTTGCCT 59.340 61.111 0.00 0.00 0.00 4.75
510 511 0.844661 ATGGTGCTACCCCCAAGACA 60.845 55.000 3.33 0.00 37.50 3.41
528 529 7.643123 AGGGGATGTGTTGTAATAGAAGAAAT 58.357 34.615 0.00 0.00 0.00 2.17
537 538 2.357154 GGCAGAGGGGATGTGTTGTAAT 60.357 50.000 0.00 0.00 0.00 1.89
550 633 2.167281 CGATATCTATGGTGGCAGAGGG 59.833 54.545 0.34 0.00 0.00 4.30
569 652 2.401583 TAGTAGCGACCACTTACCGA 57.598 50.000 0.00 0.00 0.00 4.69
571 654 5.041940 CAGAAATAGTAGCGACCACTTACC 58.958 45.833 0.00 0.00 0.00 2.85
573 656 5.884232 TCTCAGAAATAGTAGCGACCACTTA 59.116 40.000 0.00 0.00 0.00 2.24
592 675 8.648557 TTATACGGAATCAGTTCATTTCTCAG 57.351 34.615 0.00 0.00 36.01 3.35
599 682 8.210946 TCAAATCCTTATACGGAATCAGTTCAT 58.789 33.333 1.50 0.00 36.49 2.57
607 690 6.542370 CACCTTGTCAAATCCTTATACGGAAT 59.458 38.462 1.50 0.00 36.49 3.01
612 695 7.064728 GTGACTCACCTTGTCAAATCCTTATAC 59.935 40.741 0.00 0.00 44.63 1.47
630 714 4.032217 CGATGCTCTTGTTATGTGACTCAC 59.968 45.833 1.86 1.86 34.56 3.51
645 729 0.538584 TGGCATGAACTCGATGCTCT 59.461 50.000 7.79 0.00 44.75 4.09
648 732 1.089920 ACTTGGCATGAACTCGATGC 58.910 50.000 7.45 0.00 44.65 3.91
666 756 8.947115 GCACCTTATATGTTCCATTAGGATTAC 58.053 37.037 0.00 0.00 45.26 1.89
667 757 8.107095 GGCACCTTATATGTTCCATTAGGATTA 58.893 37.037 0.00 0.00 45.26 1.75
706 1052 4.714308 TCTTTCTTTCCTTCCTTTTTGGCA 59.286 37.500 0.00 0.00 35.26 4.92
719 1065 5.470437 ACCGAATCTTGTTCTCTTTCTTTCC 59.530 40.000 0.00 0.00 0.00 3.13
749 1095 5.366752 CAGATCGTTCTTTCTTTCGTGAAC 58.633 41.667 0.00 0.00 36.44 3.18
763 1109 1.586564 CGGACGCTCCAGATCGTTC 60.587 63.158 0.00 0.00 39.22 3.95
903 1251 0.689080 GAGGGTCAGAGGGAGATGCA 60.689 60.000 0.00 0.00 0.00 3.96
935 1283 2.046864 CGAGGAGGAGCGAGGAACA 61.047 63.158 0.00 0.00 0.00 3.18
936 1284 2.776913 CCGAGGAGGAGCGAGGAAC 61.777 68.421 0.00 0.00 45.00 3.62
1063 1421 1.700368 CAGAGGAGGACAGGGAGGA 59.300 63.158 0.00 0.00 0.00 3.71
1064 1422 2.063378 GCAGAGGAGGACAGGGAGG 61.063 68.421 0.00 0.00 0.00 4.30
1071 1429 0.461693 GATGCAGTGCAGAGGAGGAC 60.462 60.000 24.20 3.70 43.65 3.85
1072 1430 0.616964 AGATGCAGTGCAGAGGAGGA 60.617 55.000 24.20 0.00 43.65 3.71
1085 1454 4.802307 ACAGATTAGAGAGAGGAGATGCA 58.198 43.478 0.00 0.00 0.00 3.96
1266 1637 2.949451 AAAACATGCGACAAACACCA 57.051 40.000 0.00 0.00 0.00 4.17
1300 1683 2.506472 GAGGAACCATCGGAGGGC 59.494 66.667 8.91 0.00 0.00 5.19
1370 1753 2.509336 AACAGCCGCGGAGATTCG 60.509 61.111 33.48 11.84 0.00 3.34
1380 1766 3.425577 AACATCAATATGCAACAGCCG 57.574 42.857 0.00 0.00 36.50 5.52
1434 1824 3.927142 AGCACACAATAAGAGTACGAAGC 59.073 43.478 0.00 0.00 0.00 3.86
1435 1825 5.230306 GCTAGCACACAATAAGAGTACGAAG 59.770 44.000 10.63 0.00 0.00 3.79
1466 1863 2.203070 CCCCATCAGGCTACGCAC 60.203 66.667 0.00 0.00 0.00 5.34
1467 1864 3.479203 CCCCCATCAGGCTACGCA 61.479 66.667 0.00 0.00 0.00 5.24
1468 1865 2.666596 CTTCCCCCATCAGGCTACGC 62.667 65.000 0.00 0.00 0.00 4.42
1469 1866 1.447643 CTTCCCCCATCAGGCTACG 59.552 63.158 0.00 0.00 0.00 3.51
1486 1883 3.047695 AGGATACAACGAGATTCCCCT 57.952 47.619 0.00 0.00 41.41 4.79
1487 1884 3.118371 ACAAGGATACAACGAGATTCCCC 60.118 47.826 0.00 0.00 41.41 4.81
1563 1960 0.743701 AAGGCATTGCTCAGCTCGAG 60.744 55.000 8.45 8.45 45.37 4.04
1682 2079 4.762251 GCAAGGACCAACTCTACAAGAAAT 59.238 41.667 0.00 0.00 0.00 2.17
1684 2081 3.496160 GGCAAGGACCAACTCTACAAGAA 60.496 47.826 0.00 0.00 0.00 2.52
1717 2118 2.734276 TTAATTCCAAAACCCAGCGC 57.266 45.000 0.00 0.00 0.00 5.92
1719 2120 5.584649 GCCTTAATTAATTCCAAAACCCAGC 59.415 40.000 3.39 0.00 0.00 4.85
1745 2146 2.288825 TGAGTCCTGGAAACTAAGCGTG 60.289 50.000 0.00 0.00 0.00 5.34
1746 2147 1.968493 TGAGTCCTGGAAACTAAGCGT 59.032 47.619 0.00 0.00 0.00 5.07
1821 2222 4.605640 ACAGTTTGGCAAGTGCAATAAT 57.394 36.364 5.52 0.00 44.36 1.28
1833 2234 1.098712 TCCACCGTCAACAGTTTGGC 61.099 55.000 0.00 0.00 33.65 4.52
1847 2248 2.293399 GTGTTGGTCAGACAATTCCACC 59.707 50.000 2.17 0.00 32.24 4.61
1858 2259 7.202526 ACAAGAACAATATTTGTGTTGGTCAG 58.797 34.615 14.97 1.30 44.59 3.51
1887 2288 5.751243 AGTGTCAACGCTCTTAACAATTT 57.249 34.783 0.00 0.00 29.29 1.82
1922 2323 5.128919 AGAAGCAATTGTATAGGCCAGAAG 58.871 41.667 5.01 0.00 0.00 2.85
1948 2349 3.152341 CCTTTGACCATAGCCATCATCC 58.848 50.000 0.00 0.00 0.00 3.51
1961 2362 8.809468 ATTTATCCTAGAAGAAACCTTTGACC 57.191 34.615 0.00 0.00 0.00 4.02
1995 2396 6.017440 AGACGAGCATTTAACTTTTGTAGCAA 60.017 34.615 0.00 0.00 0.00 3.91
2002 2403 5.106673 GGCAGTAGACGAGCATTTAACTTTT 60.107 40.000 0.00 0.00 0.00 2.27
2005 2406 3.522553 GGCAGTAGACGAGCATTTAACT 58.477 45.455 0.00 0.00 0.00 2.24
2020 2421 5.464030 AGAAAAGAACTTCTACGGCAGTA 57.536 39.130 0.00 0.00 33.81 2.74
2259 2663 5.761165 AAATTACACGGCTACAACAGTTT 57.239 34.783 0.00 0.00 0.00 2.66
2342 2747 4.036380 ACTTCATTTCCTCAAAACACCGAC 59.964 41.667 0.00 0.00 0.00 4.79
2397 2802 3.088532 GCACATGTCATTGGGGAAAGTA 58.911 45.455 0.00 0.00 0.00 2.24
2506 3163 2.380084 TAAACAGATGGTCCGTGCTC 57.620 50.000 0.00 0.00 0.00 4.26
2549 3206 2.228103 GGGAAGAAAACGGTAAGCCAAG 59.772 50.000 0.00 0.00 34.09 3.61
2589 3246 7.761409 TCACCAATCTGCATGTTATTCTTAAC 58.239 34.615 0.00 0.00 38.56 2.01
2647 3304 3.056304 GAGAACAGACTCTTGCTGACAC 58.944 50.000 0.00 0.00 36.86 3.67
2657 3314 7.551035 AATTGCTTATCATGAGAACAGACTC 57.449 36.000 0.09 0.00 37.42 3.36
2758 3415 8.219660 ACTACAGGGTGGCTATATCATAAAAT 57.780 34.615 0.00 0.00 0.00 1.82
2771 3428 2.293399 CTCAAACAAACTACAGGGTGGC 59.707 50.000 0.00 0.00 0.00 5.01
2922 3812 7.767198 ACTTAGTTCAACTTGCACTTTAGTACA 59.233 33.333 0.00 0.00 0.00 2.90
2925 3815 6.458342 GCACTTAGTTCAACTTGCACTTTAGT 60.458 38.462 7.67 2.32 31.63 2.24
2967 3859 3.956744 AGTAAGAATCAGGCAAAGGGTC 58.043 45.455 0.00 0.00 0.00 4.46
3062 3955 8.292448 GGCCTGAACAATATACATGAATTACAG 58.708 37.037 0.00 6.88 0.00 2.74
3236 4129 6.683974 AATGTGCTACAATACTGGCTTAAG 57.316 37.500 0.00 0.00 0.00 1.85
3337 4235 7.362401 GCATTGTAATCAGGAAACTTGACAGAT 60.362 37.037 0.00 0.00 40.21 2.90
3424 4322 0.878086 GAACTCGGCTCATAGGCAGC 60.878 60.000 1.24 0.00 41.44 5.25
3425 4323 0.749649 AGAACTCGGCTCATAGGCAG 59.250 55.000 1.24 0.91 41.44 4.85
3426 4324 1.195115 AAGAACTCGGCTCATAGGCA 58.805 50.000 1.24 0.00 41.44 4.75
3427 4325 2.159028 AGAAAGAACTCGGCTCATAGGC 60.159 50.000 0.00 0.00 37.44 3.93
3428 4326 3.810310 AGAAAGAACTCGGCTCATAGG 57.190 47.619 0.00 0.00 0.00 2.57
3429 4327 6.100004 TGTTAAGAAAGAACTCGGCTCATAG 58.900 40.000 0.00 0.00 0.00 2.23
3430 4328 6.032956 TGTTAAGAAAGAACTCGGCTCATA 57.967 37.500 0.00 0.00 0.00 2.15
3431 4329 4.894784 TGTTAAGAAAGAACTCGGCTCAT 58.105 39.130 0.00 0.00 0.00 2.90
3432 4330 4.307432 CTGTTAAGAAAGAACTCGGCTCA 58.693 43.478 0.00 0.00 0.00 4.26
3433 4331 3.680458 CCTGTTAAGAAAGAACTCGGCTC 59.320 47.826 0.00 0.00 0.00 4.70
3434 4332 3.071167 ACCTGTTAAGAAAGAACTCGGCT 59.929 43.478 0.00 0.00 0.00 5.52
3685 4594 7.420800 AGTTCAAATCTCAACTCATGACAAAC 58.579 34.615 0.00 0.00 33.47 2.93
3735 4645 3.869473 TTGTCGGCCCTGTACACGC 62.869 63.158 0.00 0.00 0.00 5.34
3850 4760 0.732571 CACCAACTGTCAGCGTGTTT 59.267 50.000 0.00 0.00 0.00 2.83
3856 4766 2.113986 AGGCCACCAACTGTCAGC 59.886 61.111 5.01 0.00 0.00 4.26
4052 4962 3.593096 CCATCATCCACGTATGATCTGG 58.407 50.000 10.25 8.26 43.23 3.86
4209 5125 5.935945 TCATCAAAAGTAAACTCCTGGACA 58.064 37.500 0.00 0.00 0.00 4.02
4217 5133 9.490379 AAGTACTTCGATCATCAAAAGTAAACT 57.510 29.630 1.12 5.73 36.33 2.66
4272 5190 4.931661 ACTCGGAACTCACAGTAGAAAA 57.068 40.909 0.00 0.00 0.00 2.29
4299 5217 4.333649 TCTTCGAGTAACATACTACCGTGG 59.666 45.833 0.00 0.00 39.59 4.94
4317 5235 6.228273 TGAAAATCAAGTGTAGCTTCTTCG 57.772 37.500 0.00 0.00 34.69 3.79
4355 5277 7.360607 GCAGTAAATCTCAACTAGCGGTAAAAA 60.361 37.037 0.00 0.00 0.00 1.94
4419 5345 3.518634 AGAGACTCCGCAAGAAGAATC 57.481 47.619 0.00 0.00 43.02 2.52
4507 5436 6.417191 TTTCACAATGAAGTATTACCGAGC 57.583 37.500 0.00 0.00 37.70 5.03
4546 5577 4.095483 CGAAATGAAGGCTTGAATGCTACT 59.905 41.667 3.46 0.00 0.00 2.57
4579 5610 8.037166 AGAAATCAAATATCTCCAAGGCAAAAC 58.963 33.333 0.00 0.00 0.00 2.43
4581 5612 7.178983 ACAGAAATCAAATATCTCCAAGGCAAA 59.821 33.333 0.00 0.00 0.00 3.68
4583 5614 6.189859 ACAGAAATCAAATATCTCCAAGGCA 58.810 36.000 0.00 0.00 0.00 4.75
4587 5618 8.344831 CGCAATACAGAAATCAAATATCTCCAA 58.655 33.333 0.00 0.00 0.00 3.53
4656 5687 4.987912 CGCCCAAACACAAATCATAGTTTT 59.012 37.500 0.00 0.00 32.34 2.43
4658 5689 3.613910 GCGCCCAAACACAAATCATAGTT 60.614 43.478 0.00 0.00 0.00 2.24
4677 5708 3.554324 TGATATCAAAGTTTAGGTCGCGC 59.446 43.478 1.98 0.00 0.00 6.86
4678 5709 5.490213 GTTGATATCAAAGTTTAGGTCGCG 58.510 41.667 19.55 0.00 37.63 5.87
4679 5710 5.501897 CGGTTGATATCAAAGTTTAGGTCGC 60.502 44.000 19.55 3.09 37.63 5.19
4680 5711 5.579511 ACGGTTGATATCAAAGTTTAGGTCG 59.420 40.000 19.55 13.16 37.63 4.79
4681 5712 6.980051 ACGGTTGATATCAAAGTTTAGGTC 57.020 37.500 19.55 4.28 37.63 3.85
4682 5713 6.820152 GGTACGGTTGATATCAAAGTTTAGGT 59.180 38.462 24.04 14.96 37.63 3.08
4684 5715 7.837202 TGGTACGGTTGATATCAAAGTTTAG 57.163 36.000 24.04 13.67 37.63 1.85
4685 5716 8.795842 AATGGTACGGTTGATATCAAAGTTTA 57.204 30.769 24.04 15.12 37.63 2.01
4699 5730 0.035739 AACGGCTGAATGGTACGGTT 59.964 50.000 0.00 0.00 0.00 4.44
4710 5741 7.224753 GTGATGATAATCTTTCTTAACGGCTGA 59.775 37.037 0.00 0.00 0.00 4.26
4721 5752 9.853555 ACTCGATCTATGTGATGATAATCTTTC 57.146 33.333 0.00 0.00 35.14 2.62
4737 5768 5.525378 GTGCATTTTTCCTGACTCGATCTAT 59.475 40.000 0.00 0.00 0.00 1.98
4747 5778 1.680735 ACGCTTGTGCATTTTTCCTGA 59.319 42.857 0.00 0.00 39.64 3.86
4759 5790 2.329678 TTTCGGTTGGCACGCTTGTG 62.330 55.000 0.00 0.00 46.67 3.33
4760 5791 2.115911 TTTCGGTTGGCACGCTTGT 61.116 52.632 0.00 0.00 0.00 3.16
4761 5792 1.657181 GTTTCGGTTGGCACGCTTG 60.657 57.895 0.00 0.00 0.00 4.01
4763 5794 3.645975 CGTTTCGGTTGGCACGCT 61.646 61.111 0.00 0.00 0.00 5.07
4764 5795 3.944233 ACGTTTCGGTTGGCACGC 61.944 61.111 0.00 0.00 36.05 5.34
4765 5796 2.052590 CACGTTTCGGTTGGCACG 60.053 61.111 0.00 0.00 38.62 5.34
4766 5797 1.010462 GTCACGTTTCGGTTGGCAC 60.010 57.895 0.00 0.00 0.00 5.01
4767 5798 1.153329 AGTCACGTTTCGGTTGGCA 60.153 52.632 0.00 0.00 0.00 4.92
4768 5799 0.878961 AGAGTCACGTTTCGGTTGGC 60.879 55.000 0.00 0.00 0.00 4.52
4769 5800 0.859232 CAGAGTCACGTTTCGGTTGG 59.141 55.000 0.00 0.00 0.00 3.77
4770 5801 1.847818 TCAGAGTCACGTTTCGGTTG 58.152 50.000 0.00 0.00 0.00 3.77
4771 5802 2.814280 ATCAGAGTCACGTTTCGGTT 57.186 45.000 0.00 0.00 0.00 4.44
4772 5803 2.094854 GGTATCAGAGTCACGTTTCGGT 60.095 50.000 0.00 0.00 0.00 4.69
4773 5804 2.094906 TGGTATCAGAGTCACGTTTCGG 60.095 50.000 0.00 0.00 0.00 4.30
4774 5805 2.915463 GTGGTATCAGAGTCACGTTTCG 59.085 50.000 0.00 0.00 0.00 3.46
4775 5806 3.909430 TGTGGTATCAGAGTCACGTTTC 58.091 45.455 0.00 0.00 33.25 2.78
4776 5807 4.330944 TTGTGGTATCAGAGTCACGTTT 57.669 40.909 0.00 0.00 33.25 3.60
4797 5828 5.450965 CCAAGTCACATGCTTTCTTTCAGTT 60.451 40.000 0.00 0.00 0.00 3.16
4798 5829 4.037208 CCAAGTCACATGCTTTCTTTCAGT 59.963 41.667 0.00 0.00 0.00 3.41
4799 5830 4.276678 TCCAAGTCACATGCTTTCTTTCAG 59.723 41.667 0.00 0.00 0.00 3.02
4800 5831 4.206375 TCCAAGTCACATGCTTTCTTTCA 58.794 39.130 0.00 0.00 0.00 2.69
4801 5832 4.836125 TCCAAGTCACATGCTTTCTTTC 57.164 40.909 0.00 0.00 0.00 2.62
4802 5833 4.828939 TCATCCAAGTCACATGCTTTCTTT 59.171 37.500 0.00 0.00 0.00 2.52
4803 5834 4.401022 TCATCCAAGTCACATGCTTTCTT 58.599 39.130 0.00 0.00 0.00 2.52
4804 5835 4.025040 TCATCCAAGTCACATGCTTTCT 57.975 40.909 0.00 0.00 0.00 2.52
4805 5836 4.201990 GGATCATCCAAGTCACATGCTTTC 60.202 45.833 0.00 0.00 36.28 2.62
4806 5837 3.698040 GGATCATCCAAGTCACATGCTTT 59.302 43.478 0.00 0.00 36.28 3.51
4807 5838 3.285484 GGATCATCCAAGTCACATGCTT 58.715 45.455 0.00 0.00 36.28 3.91
4808 5839 2.240414 TGGATCATCCAAGTCACATGCT 59.760 45.455 2.95 0.00 45.00 3.79
4839 5870 1.976132 ATCCCATGCGAGAGTGGTGG 61.976 60.000 0.00 0.00 33.55 4.61
4850 5881 6.203723 GCGAGATAATTATAAGGATCCCATGC 59.796 42.308 8.55 0.00 0.00 4.06
4855 5886 7.113658 TCTGGCGAGATAATTATAAGGATCC 57.886 40.000 2.48 2.48 0.00 3.36
4859 5890 6.369065 GTGGTTCTGGCGAGATAATTATAAGG 59.631 42.308 0.00 0.00 0.00 2.69
4876 5907 3.624861 GCATCAGGATACAAGTGGTTCTG 59.375 47.826 0.00 0.00 41.41 3.02
4991 6023 9.740239 ACACAGCAGCATATAAAATTTCTTATG 57.260 29.630 12.63 12.63 0.00 1.90
4996 6028 9.956720 AAGATACACAGCAGCATATAAAATTTC 57.043 29.630 0.00 0.00 0.00 2.17
5000 6032 9.389755 TGTAAAGATACACAGCAGCATATAAAA 57.610 29.630 0.00 0.00 37.11 1.52
5001 6033 8.956533 TGTAAAGATACACAGCAGCATATAAA 57.043 30.769 0.00 0.00 37.11 1.40
5002 6034 8.956533 TTGTAAAGATACACAGCAGCATATAA 57.043 30.769 0.00 0.00 41.64 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.