Multiple sequence alignment - TraesCS4B01G259500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G259500 chr4B 100.000 6566 0 0 1 6566 526934295 526927730 0.000000e+00 12126.0
1 TraesCS4B01G259500 chr4B 83.871 589 65 14 163 746 25477463 25478026 9.690000e-148 534.0
2 TraesCS4B01G259500 chr4B 89.542 153 15 1 4885 5036 78607919 78607767 6.720000e-45 193.0
3 TraesCS4B01G259500 chr4B 88.199 161 18 1 4885 5044 78607617 78607457 2.420000e-44 191.0
4 TraesCS4B01G259500 chr4B 96.226 106 4 0 4020 4125 131711724 131711619 2.430000e-39 174.0
5 TraesCS4B01G259500 chr4A 96.236 2072 62 11 1970 4035 37808041 37805980 0.000000e+00 3380.0
6 TraesCS4B01G259500 chr4A 91.065 1925 94 22 4124 5975 37805991 37804072 0.000000e+00 2531.0
7 TraesCS4B01G259500 chr4A 86.271 590 24 18 815 1372 37809072 37808508 7.330000e-164 588.0
8 TraesCS4B01G259500 chr4A 93.960 149 8 1 1698 1845 37808186 37808038 2.380000e-54 224.0
9 TraesCS4B01G259500 chr4A 96.296 108 2 1 4020 4125 162808909 162809016 6.770000e-40 176.0
10 TraesCS4B01G259500 chr4A 85.612 139 12 4 2952 3088 136793778 136793646 8.880000e-29 139.0
11 TraesCS4B01G259500 chr4A 98.113 53 1 0 701 753 688616741 688616793 7.010000e-15 93.5
12 TraesCS4B01G259500 chr4A 95.745 47 2 0 6429 6475 37804048 37804002 7.060000e-10 76.8
13 TraesCS4B01G259500 chr4D 94.320 2060 57 13 1970 4029 428586823 428588822 0.000000e+00 3101.0
14 TraesCS4B01G259500 chr4D 90.762 1732 81 26 4130 5799 428588821 428590535 0.000000e+00 2239.0
15 TraesCS4B01G259500 chr4D 90.228 614 10 12 756 1342 428585656 428586246 0.000000e+00 756.0
16 TraesCS4B01G259500 chr4D 86.039 659 36 19 5946 6566 428617744 428618384 0.000000e+00 656.0
17 TraesCS4B01G259500 chr4D 80.952 441 42 17 1436 1845 428586397 428586826 1.780000e-80 311.0
18 TraesCS4B01G259500 chr4D 86.957 161 4 8 5799 5959 428617577 428617720 1.460000e-36 165.0
19 TraesCS4B01G259500 chr4D 92.035 113 9 0 1842 1954 318326971 318327083 6.810000e-35 159.0
20 TraesCS4B01G259500 chr5A 97.233 759 10 2 4 753 394999320 394998564 0.000000e+00 1275.0
21 TraesCS4B01G259500 chr5A 90.694 720 55 11 42 753 29310771 29311486 0.000000e+00 948.0
22 TraesCS4B01G259500 chr5A 89.809 157 14 2 4882 5036 303399810 303399966 4.020000e-47 200.0
23 TraesCS4B01G259500 chr3B 97.101 759 11 2 4 753 605274341 605273585 0.000000e+00 1269.0
24 TraesCS4B01G259500 chr3B 88.649 370 17 12 397 756 794977194 794976840 1.690000e-115 427.0
25 TraesCS4B01G259500 chr3B 92.965 199 14 0 206 404 794989927 794989729 2.320000e-74 291.0
26 TraesCS4B01G259500 chr3B 90.798 163 8 1 4 166 794990081 794989926 1.850000e-50 211.0
27 TraesCS4B01G259500 chr3B 84.397 141 14 5 2948 3088 679632824 679632692 1.490000e-26 132.0
28 TraesCS4B01G259500 chr1B 96.982 762 12 2 1 753 229487688 229488447 0.000000e+00 1269.0
29 TraesCS4B01G259500 chr1B 88.462 78 6 3 679 753 4962397 4962320 2.520000e-14 91.6
30 TraesCS4B01G259500 chr2A 90.358 726 53 11 42 754 719996407 719997128 0.000000e+00 937.0
31 TraesCS4B01G259500 chr2A 88.889 153 12 5 4868 5017 79315988 79316138 4.040000e-42 183.0
32 TraesCS4B01G259500 chr2D 91.781 146 11 1 4882 5026 512769189 512769334 1.120000e-47 202.0
33 TraesCS4B01G259500 chr7D 90.132 152 15 0 4885 5036 588081928 588081777 1.440000e-46 198.0
34 TraesCS4B01G259500 chr7A 90.132 152 15 0 4885 5036 679957169 679957018 1.440000e-46 198.0
35 TraesCS4B01G259500 chr7A 97.143 105 3 0 4021 4125 724678582 724678686 1.880000e-40 178.0
36 TraesCS4B01G259500 chr6A 97.115 104 3 0 4022 4125 360513221 360513118 6.770000e-40 176.0
37 TraesCS4B01G259500 chrUn 95.455 110 3 2 4018 4125 466965896 466965787 2.430000e-39 174.0
38 TraesCS4B01G259500 chrUn 98.958 96 1 0 4030 4125 95253488 95253583 8.750000e-39 172.0
39 TraesCS4B01G259500 chrUn 85.000 140 18 3 2951 3088 90453114 90452976 8.880000e-29 139.0
40 TraesCS4B01G259500 chr6B 96.262 107 3 1 4019 4125 14083888 14083993 2.430000e-39 174.0
41 TraesCS4B01G259500 chr5D 96.262 107 3 1 4019 4125 292147880 292147985 2.430000e-39 174.0
42 TraesCS4B01G259500 chr5B 93.277 119 5 3 4008 4125 293149254 293149138 8.750000e-39 172.0
43 TraesCS4B01G259500 chr5B 86.713 143 16 3 2948 3088 350369258 350369117 8.820000e-34 156.0
44 TraesCS4B01G259500 chr6D 92.920 113 8 0 1842 1954 291625708 291625820 1.460000e-36 165.0
45 TraesCS4B01G259500 chr3D 92.920 113 8 0 1842 1954 507637439 507637551 1.460000e-36 165.0
46 TraesCS4B01G259500 chr3D 87.234 141 15 3 2950 3088 138079004 138078865 2.450000e-34 158.0
47 TraesCS4B01G259500 chr3A 88.618 123 13 1 2969 3090 156234824 156234702 1.480000e-31 148.0
48 TraesCS4B01G259500 chr7B 85.714 140 12 4 2950 3088 453623444 453623312 2.470000e-29 141.0
49 TraesCS4B01G259500 chr2B 90.278 72 6 1 682 753 74831720 74831650 7.010000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G259500 chr4B 526927730 526934295 6565 True 12126.00 12126 100.0000 1 6566 1 chr4B.!!$R2 6565
1 TraesCS4B01G259500 chr4B 25477463 25478026 563 False 534.00 534 83.8710 163 746 1 chr4B.!!$F1 583
2 TraesCS4B01G259500 chr4A 37804002 37809072 5070 True 1359.96 3380 92.6554 815 6475 5 chr4A.!!$R2 5660
3 TraesCS4B01G259500 chr4D 428585656 428590535 4879 False 1601.75 3101 89.0655 756 5799 4 chr4D.!!$F2 5043
4 TraesCS4B01G259500 chr4D 428617577 428618384 807 False 410.50 656 86.4980 5799 6566 2 chr4D.!!$F3 767
5 TraesCS4B01G259500 chr5A 394998564 394999320 756 True 1275.00 1275 97.2330 4 753 1 chr5A.!!$R1 749
6 TraesCS4B01G259500 chr5A 29310771 29311486 715 False 948.00 948 90.6940 42 753 1 chr5A.!!$F1 711
7 TraesCS4B01G259500 chr3B 605273585 605274341 756 True 1269.00 1269 97.1010 4 753 1 chr3B.!!$R1 749
8 TraesCS4B01G259500 chr1B 229487688 229488447 759 False 1269.00 1269 96.9820 1 753 1 chr1B.!!$F1 752
9 TraesCS4B01G259500 chr2A 719996407 719997128 721 False 937.00 937 90.3580 42 754 1 chr2A.!!$F2 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 817 0.170561 GTGGCTGTGTACGAGTCGAT 59.829 55.0 21.5 6.19 0.00 3.59 F
1972 2152 0.041535 TACCTCCGAACAGGCCCTAA 59.958 55.0 0.0 0.00 40.77 2.69 F
1974 2154 0.546598 CCTCCGAACAGGCCCTAAAT 59.453 55.0 0.0 0.00 40.77 1.40 F
2968 3151 0.815734 ATACTCCCTCCGTTCACACG 59.184 55.0 0.0 0.00 46.71 4.49 F
4086 4271 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.0 0.0 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1977 2157 0.040425 GCAAAGGTGTGTAAGCCGTG 60.040 55.000 0.00 0.00 0.00 4.94 R
3888 4073 2.093711 ACCCTGTTTGTCAAAAGGCAAC 60.094 45.455 15.58 0.19 0.00 4.17 R
4028 4213 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32 R
4097 4282 0.179100 CCATGAGTTGGTCGCGAGAT 60.179 55.000 10.24 0.00 45.19 2.75 R
5768 6024 0.106268 ACACCACACCATTTCAGCCA 60.106 50.000 0.00 0.00 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
328 333 0.824759 GCGGGACAAGAGTAGGTGAT 59.175 55.000 0.00 0.00 0.00 3.06
604 625 2.204090 GGGTTGAGGGAGGGGTCA 60.204 66.667 0.00 0.00 0.00 4.02
754 778 7.824672 TCCGTTTCTTTTAGGTAGTAGAGAAG 58.175 38.462 0.00 0.00 0.00 2.85
793 817 0.170561 GTGGCTGTGTACGAGTCGAT 59.829 55.000 21.50 6.19 0.00 3.59
909 933 2.731721 CGCCGACGTAAGCACACA 60.732 61.111 9.67 0.00 45.62 3.72
910 934 2.851104 GCCGACGTAAGCACACAC 59.149 61.111 4.49 0.00 45.62 3.82
911 935 1.952133 GCCGACGTAAGCACACACA 60.952 57.895 4.49 0.00 45.62 3.72
912 936 1.850640 CCGACGTAAGCACACACAC 59.149 57.895 0.00 0.00 45.62 3.82
919 943 0.534877 TAAGCACACACACCCAGCAG 60.535 55.000 0.00 0.00 0.00 4.24
1182 1212 3.092511 ACCGGGATGGAGCAGCAT 61.093 61.111 6.32 0.00 42.00 3.79
1225 1285 4.657824 CAGGTTCGTGCGGTCGGT 62.658 66.667 0.00 0.00 0.00 4.69
1245 1305 1.202639 TGTGTCAGTGACGCCAGAATT 60.203 47.619 29.06 0.00 41.72 2.17
1246 1306 2.036604 TGTGTCAGTGACGCCAGAATTA 59.963 45.455 29.06 10.03 41.72 1.40
1247 1307 3.262420 GTGTCAGTGACGCCAGAATTAT 58.738 45.455 23.54 0.00 37.12 1.28
1258 1318 4.136796 CGCCAGAATTATTGGAATCTCCA 58.863 43.478 11.65 0.00 46.61 3.86
1341 1401 6.477688 GCCGCTTTATTATCACACAAGTAGTA 59.522 38.462 0.00 0.00 0.00 1.82
1342 1402 7.306632 GCCGCTTTATTATCACACAAGTAGTAG 60.307 40.741 0.00 0.00 0.00 2.57
1343 1403 7.705325 CCGCTTTATTATCACACAAGTAGTAGT 59.295 37.037 0.00 0.00 0.00 2.73
1350 1410 6.659745 ATCACACAAGTAGTAGTACCAACA 57.340 37.500 4.02 0.00 0.00 3.33
1353 1413 7.502696 TCACACAAGTAGTAGTACCAACATTT 58.497 34.615 4.02 0.00 0.00 2.32
1382 1442 6.645790 TCCGATTAGGAGGTGATACTTTAC 57.354 41.667 0.00 0.00 45.98 2.01
1383 1443 6.371278 TCCGATTAGGAGGTGATACTTTACT 58.629 40.000 0.00 0.00 45.98 2.24
1384 1444 6.264744 TCCGATTAGGAGGTGATACTTTACTG 59.735 42.308 0.00 0.00 45.98 2.74
1385 1445 6.264744 CCGATTAGGAGGTGATACTTTACTGA 59.735 42.308 0.00 0.00 45.00 3.41
1386 1446 7.039644 CCGATTAGGAGGTGATACTTTACTGAT 60.040 40.741 0.00 0.00 45.00 2.90
1387 1447 9.011095 CGATTAGGAGGTGATACTTTACTGATA 57.989 37.037 0.00 0.00 0.00 2.15
1415 1475 8.801715 AAAATCGTAAAACGTACTAGAACTGA 57.198 30.769 0.00 0.00 43.14 3.41
1416 1476 8.801715 AAATCGTAAAACGTACTAGAACTGAA 57.198 30.769 0.00 0.00 43.14 3.02
1417 1477 8.445193 AATCGTAAAACGTACTAGAACTGAAG 57.555 34.615 0.00 0.00 43.14 3.02
1420 1480 6.304208 CGTAAAACGTACTAGAACTGAAGGAC 59.696 42.308 0.00 0.00 36.74 3.85
1421 1481 4.780275 AACGTACTAGAACTGAAGGACC 57.220 45.455 0.00 0.00 0.00 4.46
1422 1482 4.031636 ACGTACTAGAACTGAAGGACCT 57.968 45.455 0.00 0.00 0.00 3.85
1423 1483 4.405548 ACGTACTAGAACTGAAGGACCTT 58.594 43.478 6.40 6.40 0.00 3.50
1427 1572 6.350277 CGTACTAGAACTGAAGGACCTTGATT 60.350 42.308 12.68 2.58 0.00 2.57
1430 1575 2.206576 ACTGAAGGACCTTGATTGCC 57.793 50.000 12.68 0.00 0.00 4.52
1432 1577 0.690192 TGAAGGACCTTGATTGCCGA 59.310 50.000 12.68 0.00 0.00 5.54
1434 1579 1.672881 GAAGGACCTTGATTGCCGATG 59.327 52.381 12.68 0.00 0.00 3.84
1441 1586 2.466846 CTTGATTGCCGATGGATTTGC 58.533 47.619 0.00 0.00 0.00 3.68
1444 1589 1.677576 GATTGCCGATGGATTTGCTGA 59.322 47.619 0.00 0.00 0.00 4.26
1449 1594 2.544486 GCCGATGGATTTGCTGATTTCC 60.544 50.000 0.00 0.00 0.00 3.13
1474 1619 3.496870 GGAGGAAAAGGAAGAACTCTGCA 60.497 47.826 0.00 0.00 0.00 4.41
1477 1622 5.495640 AGGAAAAGGAAGAACTCTGCATAG 58.504 41.667 0.00 0.00 0.00 2.23
1492 1637 3.909019 GCATAGTTGCTCGTAACACTC 57.091 47.619 0.97 0.00 45.77 3.51
1493 1638 2.279136 GCATAGTTGCTCGTAACACTCG 59.721 50.000 0.97 0.00 45.77 4.18
1508 1653 0.246635 ACTCGGTTTCGGTCTGATGG 59.753 55.000 0.00 0.00 36.95 3.51
1509 1654 1.079405 TCGGTTTCGGTCTGATGGC 60.079 57.895 0.00 0.00 36.95 4.40
1513 1658 1.339151 GGTTTCGGTCTGATGGCTCTT 60.339 52.381 0.00 0.00 0.00 2.85
1523 1668 6.016192 CGGTCTGATGGCTCTTAAGTTATCTA 60.016 42.308 1.63 0.00 0.00 1.98
1528 1673 6.986817 TGATGGCTCTTAAGTTATCTACTTGC 59.013 38.462 1.63 0.00 46.46 4.01
1545 1690 7.892609 TCTACTTGCTGTATGAACTAGTGAAA 58.107 34.615 0.00 0.00 0.00 2.69
1561 1709 9.477484 AACTAGTGAAAGTACAATTGACTGTAG 57.523 33.333 13.59 9.81 32.49 2.74
1565 1713 9.998106 AGTGAAAGTACAATTGACTGTAGTATT 57.002 29.630 13.59 1.99 34.94 1.89
1567 1715 9.772973 TGAAAGTACAATTGACTGTAGTATTGT 57.227 29.630 13.59 14.25 39.31 2.71
1572 1720 9.635520 GTACAATTGACTGTAGTATTGTACTGT 57.364 33.333 25.66 5.98 45.54 3.55
1574 1722 9.635520 ACAATTGACTGTAGTATTGTACTGTAC 57.364 33.333 13.59 10.98 36.19 2.90
1575 1723 9.634163 CAATTGACTGTAGTATTGTACTGTACA 57.366 33.333 16.26 16.26 39.81 2.90
1607 1755 9.840427 ATTAATATACTTGCAATTTATGGCGAC 57.160 29.630 0.00 0.00 0.00 5.19
1609 1757 2.166829 ACTTGCAATTTATGGCGACCA 58.833 42.857 0.00 1.01 38.19 4.02
1613 1761 1.067516 GCAATTTATGGCGACCATGCT 59.932 47.619 18.08 3.72 44.84 3.79
1618 1766 0.829990 TATGGCGACCATGCTTGAGA 59.170 50.000 18.08 0.00 44.84 3.27
1619 1767 0.182061 ATGGCGACCATGCTTGAGAT 59.818 50.000 10.09 0.00 43.39 2.75
1620 1768 0.829990 TGGCGACCATGCTTGAGATA 59.170 50.000 0.22 0.00 34.52 1.98
1628 1793 6.458206 GCGACCATGCTTGAGATAAAATGTTA 60.458 38.462 0.22 0.00 0.00 2.41
1629 1794 7.128331 CGACCATGCTTGAGATAAAATGTTAG 58.872 38.462 0.22 0.00 0.00 2.34
1672 1837 7.256511 CCATGTAAGGAATTTTGGGTAAAGGTT 60.257 37.037 0.00 0.00 0.00 3.50
1677 1842 7.865530 AGGAATTTTGGGTAAAGGTTACATT 57.134 32.000 0.96 0.00 0.00 2.71
1678 1843 7.903145 AGGAATTTTGGGTAAAGGTTACATTC 58.097 34.615 0.96 1.62 0.00 2.67
1730 1909 2.159099 CCTGCATGGCGAAGTCTAAGTA 60.159 50.000 0.00 0.00 0.00 2.24
1756 1935 9.914131 AGAAAGACATAAAAGCTATTTGGTTTC 57.086 29.630 0.00 0.33 44.50 2.78
1848 2028 9.892130 ATGTGAAGGAAAAGTTATACTAAGGAG 57.108 33.333 0.00 0.00 0.00 3.69
1850 2030 7.280428 GTGAAGGAAAAGTTATACTAAGGAGCC 59.720 40.741 0.00 0.00 0.00 4.70
1851 2031 5.915175 AGGAAAAGTTATACTAAGGAGCCG 58.085 41.667 0.00 0.00 0.00 5.52
1852 2032 5.424573 AGGAAAAGTTATACTAAGGAGCCGT 59.575 40.000 0.00 0.00 0.00 5.68
1853 2033 6.070366 AGGAAAAGTTATACTAAGGAGCCGTT 60.070 38.462 0.00 0.00 0.00 4.44
1854 2034 6.257411 GGAAAAGTTATACTAAGGAGCCGTTC 59.743 42.308 0.00 0.00 0.00 3.95
1855 2035 4.564940 AGTTATACTAAGGAGCCGTTCG 57.435 45.455 0.00 0.00 0.00 3.95
1856 2036 3.317430 AGTTATACTAAGGAGCCGTTCGG 59.683 47.826 6.90 6.90 0.00 4.30
1857 2037 1.772836 ATACTAAGGAGCCGTTCGGT 58.227 50.000 12.81 0.00 0.00 4.69
1858 2038 2.418368 TACTAAGGAGCCGTTCGGTA 57.582 50.000 12.81 0.00 0.00 4.02
1859 2039 1.549203 ACTAAGGAGCCGTTCGGTAA 58.451 50.000 12.81 0.00 0.00 2.85
1860 2040 2.105766 ACTAAGGAGCCGTTCGGTAAT 58.894 47.619 12.81 0.00 0.00 1.89
1861 2041 2.100418 ACTAAGGAGCCGTTCGGTAATC 59.900 50.000 12.81 8.48 0.00 1.75
1862 2042 0.177373 AAGGAGCCGTTCGGTAATCC 59.823 55.000 17.74 17.74 0.00 3.01
1863 2043 0.686769 AGGAGCCGTTCGGTAATCCT 60.687 55.000 20.43 20.43 33.32 3.24
1864 2044 0.529992 GGAGCCGTTCGGTAATCCTG 60.530 60.000 12.81 0.00 0.00 3.86
1865 2045 1.152383 GAGCCGTTCGGTAATCCTGC 61.152 60.000 12.81 0.00 0.00 4.85
1866 2046 1.448893 GCCGTTCGGTAATCCTGCA 60.449 57.895 12.81 0.00 0.00 4.41
1867 2047 1.429148 GCCGTTCGGTAATCCTGCAG 61.429 60.000 6.78 6.78 0.00 4.41
1868 2048 1.429148 CCGTTCGGTAATCCTGCAGC 61.429 60.000 8.66 0.00 0.00 5.25
1869 2049 0.460284 CGTTCGGTAATCCTGCAGCT 60.460 55.000 8.66 0.00 0.00 4.24
1870 2050 1.291132 GTTCGGTAATCCTGCAGCTC 58.709 55.000 8.66 0.00 0.00 4.09
1871 2051 0.178068 TTCGGTAATCCTGCAGCTCC 59.822 55.000 8.66 4.63 0.00 4.70
1872 2052 0.975556 TCGGTAATCCTGCAGCTCCA 60.976 55.000 8.66 0.00 0.00 3.86
1873 2053 0.107456 CGGTAATCCTGCAGCTCCAT 59.893 55.000 8.66 0.00 0.00 3.41
1874 2054 1.602311 GGTAATCCTGCAGCTCCATG 58.398 55.000 8.66 0.00 0.00 3.66
1875 2055 1.141657 GGTAATCCTGCAGCTCCATGA 59.858 52.381 8.66 0.00 0.00 3.07
1876 2056 2.421952 GGTAATCCTGCAGCTCCATGAA 60.422 50.000 8.66 0.00 0.00 2.57
1877 2057 2.519771 AATCCTGCAGCTCCATGAAA 57.480 45.000 8.66 0.00 0.00 2.69
1878 2058 2.750141 ATCCTGCAGCTCCATGAAAT 57.250 45.000 8.66 0.00 0.00 2.17
1879 2059 2.048444 TCCTGCAGCTCCATGAAATC 57.952 50.000 8.66 0.00 0.00 2.17
1880 2060 1.562942 TCCTGCAGCTCCATGAAATCT 59.437 47.619 8.66 0.00 0.00 2.40
1881 2061 1.676529 CCTGCAGCTCCATGAAATCTG 59.323 52.381 8.66 0.00 0.00 2.90
1882 2062 2.640184 CTGCAGCTCCATGAAATCTGA 58.360 47.619 0.00 0.00 0.00 3.27
1883 2063 2.614520 CTGCAGCTCCATGAAATCTGAG 59.385 50.000 0.00 0.00 0.00 3.35
1884 2064 1.948145 GCAGCTCCATGAAATCTGAGG 59.052 52.381 0.00 0.00 0.00 3.86
1885 2065 2.421107 GCAGCTCCATGAAATCTGAGGA 60.421 50.000 0.00 0.00 0.00 3.71
1886 2066 3.468770 CAGCTCCATGAAATCTGAGGAG 58.531 50.000 0.00 0.00 46.71 3.69
1888 2068 3.842007 CTCCATGAAATCTGAGGAGCT 57.158 47.619 0.00 0.00 39.39 4.09
1889 2069 3.468770 CTCCATGAAATCTGAGGAGCTG 58.531 50.000 0.00 0.00 39.39 4.24
1890 2070 1.948145 CCATGAAATCTGAGGAGCTGC 59.052 52.381 0.00 0.00 0.00 5.25
1891 2071 2.640184 CATGAAATCTGAGGAGCTGCA 58.360 47.619 8.35 0.00 0.00 4.41
1892 2072 2.398252 TGAAATCTGAGGAGCTGCAG 57.602 50.000 10.11 10.11 0.00 4.41
1893 2073 1.904537 TGAAATCTGAGGAGCTGCAGA 59.095 47.619 20.43 10.33 44.43 4.26
1894 2074 2.093606 TGAAATCTGAGGAGCTGCAGAG 60.094 50.000 20.43 4.49 43.65 3.35
1895 2075 0.178533 AATCTGAGGAGCTGCAGAGC 59.821 55.000 20.43 7.89 43.65 4.09
1903 2083 4.393693 GCTGCAGAGCACCTCTTT 57.606 55.556 20.43 0.00 45.46 2.52
1904 2084 2.169842 GCTGCAGAGCACCTCTTTC 58.830 57.895 20.43 0.00 45.46 2.62
1905 2085 1.304509 GCTGCAGAGCACCTCTTTCC 61.305 60.000 20.43 0.00 45.46 3.13
1906 2086 0.676151 CTGCAGAGCACCTCTTTCCC 60.676 60.000 8.42 0.00 38.99 3.97
1907 2087 1.376466 GCAGAGCACCTCTTTCCCA 59.624 57.895 0.00 0.00 38.99 4.37
1908 2088 0.250901 GCAGAGCACCTCTTTCCCAA 60.251 55.000 0.00 0.00 38.99 4.12
1909 2089 1.528129 CAGAGCACCTCTTTCCCAAC 58.472 55.000 0.00 0.00 38.99 3.77
1910 2090 1.072965 CAGAGCACCTCTTTCCCAACT 59.927 52.381 0.00 0.00 38.99 3.16
1911 2091 1.349357 AGAGCACCTCTTTCCCAACTC 59.651 52.381 0.00 0.00 37.60 3.01
1912 2092 0.402121 AGCACCTCTTTCCCAACTCC 59.598 55.000 0.00 0.00 0.00 3.85
1913 2093 0.110486 GCACCTCTTTCCCAACTCCA 59.890 55.000 0.00 0.00 0.00 3.86
1914 2094 1.897560 CACCTCTTTCCCAACTCCAC 58.102 55.000 0.00 0.00 0.00 4.02
1915 2095 1.142870 CACCTCTTTCCCAACTCCACA 59.857 52.381 0.00 0.00 0.00 4.17
1916 2096 2.065799 ACCTCTTTCCCAACTCCACAT 58.934 47.619 0.00 0.00 0.00 3.21
1917 2097 2.447047 ACCTCTTTCCCAACTCCACATT 59.553 45.455 0.00 0.00 0.00 2.71
1918 2098 3.117131 ACCTCTTTCCCAACTCCACATTT 60.117 43.478 0.00 0.00 0.00 2.32
1919 2099 3.897505 CCTCTTTCCCAACTCCACATTTT 59.102 43.478 0.00 0.00 0.00 1.82
1920 2100 4.344968 CCTCTTTCCCAACTCCACATTTTT 59.655 41.667 0.00 0.00 0.00 1.94
1937 2117 2.356665 TTTTAACTGCTGCTCCACCA 57.643 45.000 0.00 0.00 0.00 4.17
1938 2118 2.356665 TTTAACTGCTGCTCCACCAA 57.643 45.000 0.00 0.00 0.00 3.67
1939 2119 1.604604 TTAACTGCTGCTCCACCAAC 58.395 50.000 0.00 0.00 0.00 3.77
1940 2120 0.764890 TAACTGCTGCTCCACCAACT 59.235 50.000 0.00 0.00 0.00 3.16
1941 2121 0.536006 AACTGCTGCTCCACCAACTC 60.536 55.000 0.00 0.00 0.00 3.01
1942 2122 1.673665 CTGCTGCTCCACCAACTCC 60.674 63.158 0.00 0.00 0.00 3.85
1943 2123 2.743928 GCTGCTCCACCAACTCCG 60.744 66.667 0.00 0.00 0.00 4.63
1944 2124 2.046892 CTGCTCCACCAACTCCGG 60.047 66.667 0.00 0.00 0.00 5.14
1945 2125 3.612247 CTGCTCCACCAACTCCGGG 62.612 68.421 0.00 0.00 0.00 5.73
1946 2126 3.319198 GCTCCACCAACTCCGGGA 61.319 66.667 0.00 0.00 0.00 5.14
1947 2127 2.982130 CTCCACCAACTCCGGGAG 59.018 66.667 22.40 22.40 40.82 4.30
1948 2128 1.913762 CTCCACCAACTCCGGGAGT 60.914 63.158 23.90 23.90 45.64 3.85
1949 2129 2.172483 CTCCACCAACTCCGGGAGTG 62.172 65.000 29.37 19.88 42.59 3.51
1950 2130 2.347490 CACCAACTCCGGGAGTGG 59.653 66.667 29.37 29.08 42.59 4.00
1951 2131 2.203182 ACCAACTCCGGGAGTGGA 59.797 61.111 33.44 6.38 42.59 4.02
1957 2137 3.516780 TCCGGGAGTGGAGTACCT 58.483 61.111 0.00 0.00 37.04 3.08
1958 2138 1.305623 TCCGGGAGTGGAGTACCTC 59.694 63.158 0.00 0.00 37.04 3.85
1967 2147 1.516423 GGAGTACCTCCGAACAGGC 59.484 63.158 0.00 0.00 41.08 4.85
1968 2148 1.516423 GAGTACCTCCGAACAGGCC 59.484 63.158 0.00 0.00 40.77 5.19
1969 2149 1.957765 GAGTACCTCCGAACAGGCCC 61.958 65.000 0.00 0.00 40.77 5.80
1970 2150 1.988406 GTACCTCCGAACAGGCCCT 60.988 63.158 0.00 0.00 40.77 5.19
1971 2151 0.685458 GTACCTCCGAACAGGCCCTA 60.685 60.000 0.00 0.00 40.77 3.53
1972 2152 0.041535 TACCTCCGAACAGGCCCTAA 59.958 55.000 0.00 0.00 40.77 2.69
1973 2153 0.838987 ACCTCCGAACAGGCCCTAAA 60.839 55.000 0.00 0.00 40.77 1.85
1974 2154 0.546598 CCTCCGAACAGGCCCTAAAT 59.453 55.000 0.00 0.00 40.77 1.40
1975 2155 1.064685 CCTCCGAACAGGCCCTAAATT 60.065 52.381 0.00 0.00 40.77 1.82
1976 2156 2.171870 CCTCCGAACAGGCCCTAAATTA 59.828 50.000 0.00 0.00 40.77 1.40
1977 2157 3.203716 CTCCGAACAGGCCCTAAATTAC 58.796 50.000 0.00 0.00 40.77 1.89
1978 2158 2.572556 TCCGAACAGGCCCTAAATTACA 59.427 45.455 0.00 0.00 40.77 2.41
1979 2159 2.681344 CCGAACAGGCCCTAAATTACAC 59.319 50.000 0.00 0.00 0.00 2.90
1990 2170 4.093850 CCCTAAATTACACGGCTTACACAC 59.906 45.833 0.00 0.00 0.00 3.82
2011 2191 3.119495 ACCTTTGCTATTTCGATGTTGCC 60.119 43.478 0.00 0.00 0.00 4.52
2025 2205 7.297936 TCGATGTTGCCTATCCTTTTCTATA 57.702 36.000 0.00 0.00 0.00 1.31
2152 2332 5.170748 GTCATGTCAAACATTGGGAAATCC 58.829 41.667 0.00 0.00 36.53 3.01
2407 2587 4.987832 TGTTGATGTGTTGGTTGTGTTAC 58.012 39.130 0.00 0.00 0.00 2.50
2424 2606 4.215613 GTGTTACAACAGAGGAATTGGTCC 59.784 45.833 0.00 0.00 42.68 4.46
2486 2668 8.019656 TGGTTTAGAGATGTTTCCCTATAGAC 57.980 38.462 0.00 0.00 0.00 2.59
2491 2673 2.857592 TGTTTCCCTATAGACGACGC 57.142 50.000 0.00 0.00 0.00 5.19
2730 2913 4.389382 CGGTGTCATAACGGTCATTTTGTA 59.611 41.667 0.00 0.00 0.00 2.41
2734 2917 7.302524 GTGTCATAACGGTCATTTTGTATGTT 58.697 34.615 0.00 0.00 0.00 2.71
2771 2954 6.484643 ACATGATCTTACTGTATTGGCATCAC 59.515 38.462 0.00 0.00 0.00 3.06
2880 3063 9.293404 AGATGATGGTTGTTGGATAATGATTAG 57.707 33.333 0.00 0.00 0.00 1.73
2890 3073 8.795513 TGTTGGATAATGATTAGCACCATATTG 58.204 33.333 2.68 0.00 0.00 1.90
2921 3104 5.378332 AGTATGAGATTAGTCTACGTGGCT 58.622 41.667 0.00 0.00 33.97 4.75
2968 3151 0.815734 ATACTCCCTCCGTTCACACG 59.184 55.000 0.00 0.00 46.71 4.49
3012 3195 9.521841 TTCTTCTGAATCGGATGTATATAGAGT 57.478 33.333 5.10 0.00 0.00 3.24
3044 3227 8.891928 CACGTTTTAATGTGTTTATTCACTCAG 58.108 33.333 6.65 0.00 40.25 3.35
3093 3276 9.474920 TTGAAATATCCAAAACATCTTGTGAAC 57.525 29.630 0.00 0.00 0.00 3.18
3260 3443 1.811266 CCATCACGAGGAACTGCCG 60.811 63.158 0.00 0.00 41.55 5.69
3381 3564 2.437281 AGACATGGCCTCAATCGAGATT 59.563 45.455 3.32 0.00 42.34 2.40
3451 3634 6.258947 GGTAAGTTCTGACCAATAAGAGCATC 59.741 42.308 1.67 0.00 35.65 3.91
3872 4055 9.686683 ACCTGCTGAAAGTACAAGAATATTATT 57.313 29.630 0.00 0.00 35.30 1.40
4001 4186 6.426937 CCTTCCTACTTTCTTTGAACGAATGA 59.573 38.462 4.68 0.00 0.00 2.57
4005 4190 6.423905 CCTACTTTCTTTGAACGAATGACAGA 59.576 38.462 4.68 0.00 0.00 3.41
4008 4193 6.538742 ACTTTCTTTGAACGAATGACAGAAGA 59.461 34.615 4.68 0.00 0.00 2.87
4010 4195 7.496529 TTCTTTGAACGAATGACAGAAGAAT 57.503 32.000 0.00 0.00 29.76 2.40
4036 4221 9.569167 TTTGTCGTTATTTCATTAACAACAACA 57.431 25.926 1.52 0.00 38.20 3.33
4037 4222 9.569167 TTGTCGTTATTTCATTAACAACAACAA 57.431 25.926 0.00 0.00 35.27 2.83
4038 4223 9.011407 TGTCGTTATTTCATTAACAACAACAAC 57.989 29.630 0.00 0.00 28.71 3.32
4039 4224 9.011407 GTCGTTATTTCATTAACAACAACAACA 57.989 29.630 0.00 0.00 32.69 3.33
4040 4225 9.569167 TCGTTATTTCATTAACAACAACAACAA 57.431 25.926 0.00 0.00 32.69 2.83
4041 4226 9.613153 CGTTATTTCATTAACAACAACAACAAC 57.387 29.630 0.00 0.00 32.69 3.32
4045 4230 7.946655 TTCATTAACAACAACAACAACAACA 57.053 28.000 0.00 0.00 0.00 3.33
4046 4231 7.946655 TCATTAACAACAACAACAACAACAA 57.053 28.000 0.00 0.00 0.00 2.83
4047 4232 8.365399 TCATTAACAACAACAACAACAACAAA 57.635 26.923 0.00 0.00 0.00 2.83
4048 4233 8.491152 TCATTAACAACAACAACAACAACAAAG 58.509 29.630 0.00 0.00 0.00 2.77
4049 4234 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
4050 4235 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
4051 4236 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
4052 4237 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
4053 4238 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
4054 4239 4.819088 ACAACAACAACAACAAAGCCTTTT 59.181 33.333 0.00 0.00 0.00 2.27
4064 4249 3.258971 CAAAGCCTTTTGTCCCAAACA 57.741 42.857 0.00 0.00 39.05 2.83
4065 4250 3.604582 CAAAGCCTTTTGTCCCAAACAA 58.395 40.909 0.00 0.00 46.11 2.83
4078 4263 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
4079 4264 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
4080 4265 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
4081 4266 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
4082 4267 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
4083 4268 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
4084 4269 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
4085 4270 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
4086 4271 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
4087 4272 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
4088 4273 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
4089 4274 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
4104 4289 2.540101 GTGAAACCCATAAGATCTCGCG 59.460 50.000 0.00 0.00 0.00 5.87
4105 4290 2.429250 TGAAACCCATAAGATCTCGCGA 59.571 45.455 9.26 9.26 0.00 5.87
4106 4291 2.510768 AACCCATAAGATCTCGCGAC 57.489 50.000 3.71 0.00 0.00 5.19
4107 4292 0.674534 ACCCATAAGATCTCGCGACC 59.325 55.000 3.71 0.00 0.00 4.79
4108 4293 0.673985 CCCATAAGATCTCGCGACCA 59.326 55.000 3.71 0.00 0.00 4.02
4109 4294 1.068588 CCCATAAGATCTCGCGACCAA 59.931 52.381 3.71 0.00 0.00 3.67
4110 4295 2.128035 CCATAAGATCTCGCGACCAAC 58.872 52.381 3.71 0.00 0.00 3.77
4111 4296 2.223829 CCATAAGATCTCGCGACCAACT 60.224 50.000 3.71 0.00 0.00 3.16
4112 4297 2.846039 TAAGATCTCGCGACCAACTC 57.154 50.000 3.71 0.00 0.00 3.01
4113 4298 0.888619 AAGATCTCGCGACCAACTCA 59.111 50.000 3.71 0.00 0.00 3.41
4114 4299 1.107114 AGATCTCGCGACCAACTCAT 58.893 50.000 3.71 0.00 0.00 2.90
4115 4300 1.202348 AGATCTCGCGACCAACTCATG 60.202 52.381 3.71 0.00 0.00 3.07
4123 4308 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
4124 4309 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
4126 4311 1.471119 CAACTCATGGCTCTGGCATT 58.529 50.000 3.84 0.00 46.61 3.56
4127 4312 2.646930 CAACTCATGGCTCTGGCATTA 58.353 47.619 3.84 0.00 46.61 1.90
4373 4558 1.475280 CCATGAGAATGGGTGCACAAG 59.525 52.381 20.43 0.00 38.04 3.16
4521 4714 1.466851 GCCATAGGCCATTCCCTTGC 61.467 60.000 5.01 0.00 44.06 4.01
4559 4752 2.351157 GCAGCTAGCCAGACAAAGTTTG 60.351 50.000 12.13 14.13 37.23 2.93
4564 4757 4.740205 GCTAGCCAGACAAAGTTTGTTTTC 59.260 41.667 21.70 9.89 45.52 2.29
4566 4759 3.118775 AGCCAGACAAAGTTTGTTTTCCC 60.119 43.478 21.70 9.19 45.52 3.97
4567 4760 3.792401 CCAGACAAAGTTTGTTTTCCCC 58.208 45.455 21.70 8.50 45.52 4.81
4616 4811 4.755123 CCGGGTTCCACTATAAGCTTAATG 59.245 45.833 10.85 9.22 0.00 1.90
4702 4915 3.167485 ACATTGTTGTGGGATGCTTGAT 58.833 40.909 0.00 0.00 33.85 2.57
4766 4979 9.683069 GGATTTAATGTTTATCTGCCACTATTG 57.317 33.333 0.00 0.00 0.00 1.90
4978 5197 3.953612 TGTTTGTTCAGCCATTTCAGTCT 59.046 39.130 0.00 0.00 0.00 3.24
4983 5202 6.048732 TGTTCAGCCATTTCAGTCTGTATA 57.951 37.500 0.00 0.00 0.00 1.47
5074 5294 8.673400 ACCATTGGTACTTAGCTATGCGCTAG 62.673 46.154 6.54 9.19 42.68 3.42
5164 5384 7.963532 TCTGGATTAATAGAACTGTACCCATC 58.036 38.462 0.00 0.00 0.00 3.51
5166 5386 6.551975 TGGATTAATAGAACTGTACCCATCGA 59.448 38.462 0.00 0.00 0.00 3.59
5183 5403 3.906720 TCGAGCCCTACTTATTGCTTT 57.093 42.857 0.00 0.00 33.41 3.51
5216 5436 5.045724 TCAACCCGAAAGCCCTACTTATTAA 60.046 40.000 0.00 0.00 37.75 1.40
5231 5451 9.646427 CCTACTTATTAATTGAGCCTGAGATAC 57.354 37.037 0.00 0.00 0.00 2.24
5347 5570 4.141620 CCATCATTCAGCAGTACCCTAAGT 60.142 45.833 0.00 0.00 0.00 2.24
5425 5652 9.665264 GTTTGATTAAACTGAAACGATTCTTCT 57.335 29.630 6.98 0.00 42.26 2.85
5554 5781 5.535406 TCCTACCTTGAGAAGAACGGATATC 59.465 44.000 0.00 0.00 0.00 1.63
5569 5796 3.269178 GGATATCTGCAGGCTTAGCATC 58.731 50.000 15.13 6.26 41.82 3.91
5576 5803 7.615039 ATCTGCAGGCTTAGCATCTATATAT 57.385 36.000 15.13 0.00 41.82 0.86
5577 5804 8.718158 ATCTGCAGGCTTAGCATCTATATATA 57.282 34.615 15.13 0.00 41.82 0.86
5580 5807 6.042093 TGCAGGCTTAGCATCTATATATACCC 59.958 42.308 6.53 0.00 37.02 3.69
5602 5833 6.540189 ACCCGAGAAGATTGATGTTATTCTTG 59.460 38.462 0.00 0.00 33.14 3.02
5632 5863 3.685139 AACTCATGGACACAGGTACAG 57.315 47.619 0.00 0.00 42.34 2.74
5644 5875 2.708861 ACAGGTACAGTCCATTTGGTCA 59.291 45.455 0.00 0.00 36.34 4.02
5650 5881 2.108075 ACAGTCCATTTGGTCACATCCA 59.892 45.455 0.00 0.00 36.34 3.41
5676 5907 3.559238 AAAGGTGCTGTTATTGAAGCG 57.441 42.857 0.00 0.00 42.54 4.68
5677 5908 1.453155 AGGTGCTGTTATTGAAGCGG 58.547 50.000 0.00 0.00 42.54 5.52
5709 5965 5.352293 CCTCGATGATCAGTTTGATTGTTCA 59.648 40.000 0.09 0.00 37.20 3.18
5768 6024 8.567285 AGCTGTAGTTTATGCTTAATCACTTT 57.433 30.769 2.97 0.00 30.96 2.66
5784 6040 1.688197 ACTTTGGCTGAAATGGTGTGG 59.312 47.619 0.00 0.00 0.00 4.17
5839 6105 4.157849 TGATTGTGGGTGTCAAAGTACA 57.842 40.909 0.00 0.00 0.00 2.90
5846 6112 6.797454 TGTGGGTGTCAAAGTACAAATAAAC 58.203 36.000 0.00 0.00 0.00 2.01
5863 6129 2.426752 CCGTGCTTGCGTTTTCCG 60.427 61.111 0.00 0.00 40.40 4.30
5865 6131 1.010574 CGTGCTTGCGTTTTCCGAA 60.011 52.632 0.00 0.00 39.56 4.30
5866 6132 0.590230 CGTGCTTGCGTTTTCCGAAA 60.590 50.000 0.00 0.00 39.56 3.46
5871 6137 0.593773 TTGCGTTTTCCGAAAGCTGC 60.594 50.000 13.48 13.48 39.56 5.25
5877 6143 2.774439 TTTCCGAAAGCTGCTTGTTC 57.226 45.000 16.73 9.74 0.00 3.18
5959 6262 3.894427 AGACACTTGAGATCACACTGTCT 59.106 43.478 19.14 19.14 35.24 3.41
6016 6321 2.770164 TCTTAGGCAGAGAAAGCACC 57.230 50.000 0.00 0.00 0.00 5.01
6048 6353 3.577415 ACTCCCCACTGACTGTTAAGTAC 59.423 47.826 0.00 0.00 36.52 2.73
6049 6354 2.559668 TCCCCACTGACTGTTAAGTACG 59.440 50.000 0.00 0.00 36.52 3.67
6050 6355 2.298163 CCCCACTGACTGTTAAGTACGT 59.702 50.000 0.00 0.00 36.52 3.57
6051 6356 3.243975 CCCCACTGACTGTTAAGTACGTT 60.244 47.826 0.00 0.00 36.52 3.99
6052 6357 4.022068 CCCCACTGACTGTTAAGTACGTTA 60.022 45.833 0.00 0.00 36.52 3.18
6057 6362 6.089016 CACTGACTGTTAAGTACGTTATGTGG 59.911 42.308 0.00 0.00 36.52 4.17
6062 6377 8.470040 ACTGTTAAGTACGTTATGTGGTAATG 57.530 34.615 0.00 0.00 33.79 1.90
6070 6385 6.621316 ACGTTATGTGGTAATGTTGTTTGA 57.379 33.333 0.00 0.00 39.00 2.69
6088 6403 4.877378 TTGATTGATCCTGCTGCTTTTT 57.123 36.364 0.00 0.00 0.00 1.94
6089 6404 5.981088 TTGATTGATCCTGCTGCTTTTTA 57.019 34.783 0.00 0.00 0.00 1.52
6097 6412 4.714632 TCCTGCTGCTTTTTAAGTGTAGT 58.285 39.130 0.00 0.00 0.00 2.73
6098 6413 5.860611 TCCTGCTGCTTTTTAAGTGTAGTA 58.139 37.500 0.00 0.00 0.00 1.82
6099 6414 5.932303 TCCTGCTGCTTTTTAAGTGTAGTAG 59.068 40.000 0.00 0.00 0.00 2.57
6100 6415 5.701290 CCTGCTGCTTTTTAAGTGTAGTAGT 59.299 40.000 0.00 0.00 0.00 2.73
6101 6416 6.872020 CCTGCTGCTTTTTAAGTGTAGTAGTA 59.128 38.462 0.00 0.00 0.00 1.82
6102 6417 7.386848 CCTGCTGCTTTTTAAGTGTAGTAGTAA 59.613 37.037 0.00 0.00 0.00 2.24
6103 6418 8.842358 TGCTGCTTTTTAAGTGTAGTAGTAAT 57.158 30.769 0.00 0.00 0.00 1.89
6135 6450 2.100631 GCTCGTGTCATCCCCAACG 61.101 63.158 0.00 0.00 37.38 4.10
6140 6455 0.034896 GTGTCATCCCCAACGACAGT 59.965 55.000 0.00 0.00 40.17 3.55
6216 6531 4.456253 CGAGCCGCAAAGCAGCAG 62.456 66.667 0.00 0.00 33.98 4.24
6217 6532 4.773117 GAGCCGCAAAGCAGCAGC 62.773 66.667 0.00 0.00 38.18 5.25
6269 6608 4.340894 CACATCTGGTGTCCATAAAACG 57.659 45.455 0.00 0.00 42.75 3.60
6278 6617 0.036448 TCCATAAAACGGCCGACCAA 59.964 50.000 35.90 15.01 34.57 3.67
6280 6619 0.875728 CATAAAACGGCCGACCAACA 59.124 50.000 35.90 11.85 34.57 3.33
6281 6620 0.876399 ATAAAACGGCCGACCAACAC 59.124 50.000 35.90 0.00 34.57 3.32
6283 6622 2.897172 AAAACGGCCGACCAACACCT 62.897 55.000 35.90 1.64 34.57 4.00
6285 6624 4.308458 CGGCCGACCAACACCTGA 62.308 66.667 24.07 0.00 34.57 3.86
6341 6680 1.508632 TGCAAAGTTAGTCGCTCACC 58.491 50.000 0.00 0.00 0.00 4.02
6432 6773 1.707632 CGTGCTCTGAACTCTGAAGG 58.292 55.000 0.00 0.00 0.00 3.46
6495 6836 1.466025 TAGTGGTGACCGGTGGTGAC 61.466 60.000 14.63 3.18 39.06 3.67
6524 6865 2.025863 GCCTGGGGATCACCATTGAAG 61.026 57.143 19.38 5.02 42.91 3.02
6547 6888 1.080025 CCAAGTCCGGTCCGAGTTC 60.080 63.158 14.39 0.00 0.00 3.01
6548 6889 1.533469 CCAAGTCCGGTCCGAGTTCT 61.533 60.000 14.39 2.31 0.00 3.01
6550 6891 1.046204 AAGTCCGGTCCGAGTTCTTT 58.954 50.000 14.39 0.00 0.00 2.52
6552 6893 2.242043 AGTCCGGTCCGAGTTCTTTTA 58.758 47.619 14.39 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
328 333 1.404391 GAGGCCTCGAACGATCAGTAA 59.596 52.381 19.06 0.00 0.00 2.24
604 625 0.253610 TGTGTCCACTCAACCGGTTT 59.746 50.000 19.55 0.00 0.00 3.27
692 716 1.712350 CTTACGTCGTTGTCCTTCGTG 59.288 52.381 1.78 0.00 36.24 4.35
754 778 3.614616 CACTGCTTCGTCCAGAACTAATC 59.385 47.826 6.71 0.00 34.66 1.75
1035 1059 4.554036 GATGGGGAGTGCGAGGGC 62.554 72.222 0.00 0.00 40.52 5.19
1036 1060 2.765807 AGATGGGGAGTGCGAGGG 60.766 66.667 0.00 0.00 0.00 4.30
1218 1254 1.660575 GTCACTGACACACCGACCG 60.661 63.158 4.17 0.00 32.09 4.79
1225 1285 0.392706 ATTCTGGCGTCACTGACACA 59.607 50.000 9.84 6.67 32.09 3.72
1258 1318 1.411612 CTATCCTACGCGACCCCTTTT 59.588 52.381 15.93 0.00 0.00 2.27
1348 1408 4.700213 CCTCCTAATCGGAACACAAAATGT 59.300 41.667 0.00 0.00 46.42 2.71
1350 1410 4.700213 CACCTCCTAATCGGAACACAAAAT 59.300 41.667 0.00 0.00 42.53 1.82
1353 1413 2.901192 TCACCTCCTAATCGGAACACAA 59.099 45.455 0.00 0.00 42.53 3.33
1359 1419 6.264744 CAGTAAAGTATCACCTCCTAATCGGA 59.735 42.308 0.00 0.00 40.30 4.55
1360 1420 6.264744 TCAGTAAAGTATCACCTCCTAATCGG 59.735 42.308 0.00 0.00 0.00 4.18
1389 1449 9.891828 TCAGTTCTAGTACGTTTTACGATTTTA 57.108 29.630 6.19 0.00 46.05 1.52
1390 1450 8.801715 TCAGTTCTAGTACGTTTTACGATTTT 57.198 30.769 6.19 0.00 46.05 1.82
1391 1451 8.801715 TTCAGTTCTAGTACGTTTTACGATTT 57.198 30.769 6.19 0.00 46.05 2.17
1392 1452 7.540055 CCTTCAGTTCTAGTACGTTTTACGATT 59.460 37.037 6.19 0.00 46.05 3.34
1393 1453 7.025963 CCTTCAGTTCTAGTACGTTTTACGAT 58.974 38.462 6.19 0.00 46.05 3.73
1394 1454 6.204688 TCCTTCAGTTCTAGTACGTTTTACGA 59.795 38.462 6.19 0.00 46.05 3.43
1396 1456 6.584184 GGTCCTTCAGTTCTAGTACGTTTTAC 59.416 42.308 0.00 0.00 0.00 2.01
1408 1468 3.416156 GCAATCAAGGTCCTTCAGTTCT 58.584 45.455 0.00 0.00 0.00 3.01
1409 1469 2.489722 GGCAATCAAGGTCCTTCAGTTC 59.510 50.000 0.00 0.00 0.00 3.01
1410 1470 2.519013 GGCAATCAAGGTCCTTCAGTT 58.481 47.619 0.00 0.00 0.00 3.16
1412 1472 1.089920 CGGCAATCAAGGTCCTTCAG 58.910 55.000 0.00 0.00 0.00 3.02
1413 1473 0.690192 TCGGCAATCAAGGTCCTTCA 59.310 50.000 0.00 0.00 0.00 3.02
1414 1474 1.672881 CATCGGCAATCAAGGTCCTTC 59.327 52.381 0.00 0.00 0.00 3.46
1415 1475 1.683011 CCATCGGCAATCAAGGTCCTT 60.683 52.381 0.00 0.00 0.00 3.36
1416 1476 0.107017 CCATCGGCAATCAAGGTCCT 60.107 55.000 0.00 0.00 0.00 3.85
1417 1477 0.107214 TCCATCGGCAATCAAGGTCC 60.107 55.000 0.00 0.00 0.00 4.46
1420 1480 2.800629 GCAAATCCATCGGCAATCAAGG 60.801 50.000 0.00 0.00 0.00 3.61
1421 1481 2.100252 AGCAAATCCATCGGCAATCAAG 59.900 45.455 0.00 0.00 0.00 3.02
1422 1482 2.101783 AGCAAATCCATCGGCAATCAA 58.898 42.857 0.00 0.00 0.00 2.57
1423 1483 1.406180 CAGCAAATCCATCGGCAATCA 59.594 47.619 0.00 0.00 0.00 2.57
1427 1572 1.766494 AATCAGCAAATCCATCGGCA 58.234 45.000 0.00 0.00 0.00 5.69
1430 1575 2.355756 ACGGAAATCAGCAAATCCATCG 59.644 45.455 0.00 0.00 32.08 3.84
1432 1577 2.428171 CCACGGAAATCAGCAAATCCAT 59.572 45.455 0.00 0.00 32.08 3.41
1434 1579 2.091541 TCCACGGAAATCAGCAAATCC 58.908 47.619 0.00 0.00 0.00 3.01
1449 1594 3.067833 GAGTTCTTCCTTTTCCTCCACG 58.932 50.000 0.00 0.00 0.00 4.94
1457 1602 6.566197 CAACTATGCAGAGTTCTTCCTTTT 57.434 37.500 23.32 0.00 37.57 2.27
1474 1619 2.490903 ACCGAGTGTTACGAGCAACTAT 59.509 45.455 0.00 0.00 0.00 2.12
1477 1622 1.494824 AACCGAGTGTTACGAGCAAC 58.505 50.000 0.00 0.00 34.69 4.17
1486 1631 0.748450 TCAGACCGAAACCGAGTGTT 59.252 50.000 0.00 0.00 39.43 3.32
1487 1632 0.966920 ATCAGACCGAAACCGAGTGT 59.033 50.000 0.00 0.00 0.00 3.55
1491 1636 1.079405 GCCATCAGACCGAAACCGA 60.079 57.895 0.00 0.00 0.00 4.69
1492 1637 1.079127 AGCCATCAGACCGAAACCG 60.079 57.895 0.00 0.00 0.00 4.44
1493 1638 0.250513 AGAGCCATCAGACCGAAACC 59.749 55.000 0.00 0.00 0.00 3.27
1523 1668 6.525629 ACTTTCACTAGTTCATACAGCAAGT 58.474 36.000 0.00 0.00 0.00 3.16
1581 1729 9.840427 GTCGCCATAAATTGCAAGTATATTAAT 57.160 29.630 4.94 0.00 0.00 1.40
1582 1730 8.293867 GGTCGCCATAAATTGCAAGTATATTAA 58.706 33.333 4.94 0.00 0.00 1.40
1607 1755 7.338800 ACCTAACATTTTATCTCAAGCATGG 57.661 36.000 0.00 0.00 0.00 3.66
1609 1757 8.462016 GTGAACCTAACATTTTATCTCAAGCAT 58.538 33.333 0.00 0.00 0.00 3.79
1628 1793 5.819991 ACATGGAACTGAATATGTGAACCT 58.180 37.500 0.00 0.00 32.90 3.50
1629 1794 7.201732 CCTTACATGGAACTGAATATGTGAACC 60.202 40.741 0.00 0.00 35.55 3.62
1645 1810 6.439058 CCTTTACCCAAAATTCCTTACATGGA 59.561 38.462 0.00 0.00 0.00 3.41
1672 1837 3.072330 TCAGCCAGACAGGTTTGAATGTA 59.928 43.478 0.00 0.00 40.61 2.29
1677 1842 1.271543 CCATCAGCCAGACAGGTTTGA 60.272 52.381 0.00 0.00 40.61 2.69
1678 1843 1.171308 CCATCAGCCAGACAGGTTTG 58.829 55.000 0.00 0.00 40.61 2.93
1730 1909 9.914131 GAAACCAAATAGCTTTTATGTCTTTCT 57.086 29.630 0.00 0.00 0.00 2.52
1756 1935 3.758023 TCCATGCTCCAAATGTAACACTG 59.242 43.478 0.00 0.00 0.00 3.66
1804 1983 9.613428 CCTTCACATTATTAGATACCAACTTGA 57.387 33.333 0.00 0.00 0.00 3.02
1805 1984 9.613428 TCCTTCACATTATTAGATACCAACTTG 57.387 33.333 0.00 0.00 0.00 3.16
1845 2025 0.529992 CAGGATTACCGAACGGCTCC 60.530 60.000 13.32 15.41 41.83 4.70
1846 2026 1.152383 GCAGGATTACCGAACGGCTC 61.152 60.000 13.32 7.67 41.83 4.70
1847 2027 1.153429 GCAGGATTACCGAACGGCT 60.153 57.895 13.32 3.69 41.83 5.52
1848 2028 1.429148 CTGCAGGATTACCGAACGGC 61.429 60.000 13.32 0.00 41.83 5.68
1850 2030 0.460284 AGCTGCAGGATTACCGAACG 60.460 55.000 17.12 0.00 41.83 3.95
1851 2031 1.291132 GAGCTGCAGGATTACCGAAC 58.709 55.000 17.12 0.00 41.83 3.95
1852 2032 0.178068 GGAGCTGCAGGATTACCGAA 59.822 55.000 17.12 0.00 41.83 4.30
1853 2033 0.975556 TGGAGCTGCAGGATTACCGA 60.976 55.000 17.12 0.00 41.83 4.69
1854 2034 0.107456 ATGGAGCTGCAGGATTACCG 59.893 55.000 17.12 0.00 41.83 4.02
1855 2035 1.141657 TCATGGAGCTGCAGGATTACC 59.858 52.381 19.05 0.00 0.00 2.85
1856 2036 2.627515 TCATGGAGCTGCAGGATTAC 57.372 50.000 19.05 0.00 0.00 1.89
1857 2037 3.650281 TTTCATGGAGCTGCAGGATTA 57.350 42.857 23.26 11.76 0.00 1.75
1858 2038 2.519771 TTTCATGGAGCTGCAGGATT 57.480 45.000 23.26 0.00 0.00 3.01
1859 2039 2.175069 AGATTTCATGGAGCTGCAGGAT 59.825 45.455 23.26 9.64 0.00 3.24
1860 2040 1.562942 AGATTTCATGGAGCTGCAGGA 59.437 47.619 19.05 19.05 0.00 3.86
1861 2041 1.676529 CAGATTTCATGGAGCTGCAGG 59.323 52.381 14.22 14.22 0.00 4.85
1862 2042 2.614520 CTCAGATTTCATGGAGCTGCAG 59.385 50.000 14.98 10.11 0.00 4.41
1863 2043 2.640184 CTCAGATTTCATGGAGCTGCA 58.360 47.619 11.44 11.44 0.00 4.41
1864 2044 1.948145 CCTCAGATTTCATGGAGCTGC 59.052 52.381 0.00 0.00 0.00 5.25
1865 2045 3.468770 CTCCTCAGATTTCATGGAGCTG 58.531 50.000 0.00 8.40 37.98 4.24
1866 2046 3.842007 CTCCTCAGATTTCATGGAGCT 57.158 47.619 0.00 0.00 37.98 4.09
1868 2048 3.468770 CAGCTCCTCAGATTTCATGGAG 58.531 50.000 0.00 0.00 45.05 3.86
1869 2049 2.421107 GCAGCTCCTCAGATTTCATGGA 60.421 50.000 0.00 0.00 0.00 3.41
1870 2050 1.948145 GCAGCTCCTCAGATTTCATGG 59.052 52.381 0.00 0.00 0.00 3.66
1871 2051 2.614520 CTGCAGCTCCTCAGATTTCATG 59.385 50.000 0.00 0.00 32.26 3.07
1872 2052 2.504585 TCTGCAGCTCCTCAGATTTCAT 59.495 45.455 9.47 0.00 34.69 2.57
1873 2053 1.904537 TCTGCAGCTCCTCAGATTTCA 59.095 47.619 9.47 0.00 34.69 2.69
1874 2054 2.553086 CTCTGCAGCTCCTCAGATTTC 58.447 52.381 9.47 0.00 38.50 2.17
1875 2055 1.407162 GCTCTGCAGCTCCTCAGATTT 60.407 52.381 9.47 0.00 43.09 2.17
1876 2056 0.178533 GCTCTGCAGCTCCTCAGATT 59.821 55.000 9.47 0.00 43.09 2.40
1877 2057 1.824658 GCTCTGCAGCTCCTCAGAT 59.175 57.895 9.47 0.00 43.09 2.90
1878 2058 3.296851 GCTCTGCAGCTCCTCAGA 58.703 61.111 9.47 8.90 43.09 3.27
1887 2067 0.676151 GGGAAAGAGGTGCTCTGCAG 60.676 60.000 7.63 7.63 40.28 4.41
1888 2068 1.376466 GGGAAAGAGGTGCTCTGCA 59.624 57.895 0.00 0.00 40.28 4.41
1889 2069 0.250901 TTGGGAAAGAGGTGCTCTGC 60.251 55.000 0.00 0.00 40.28 4.26
1890 2070 1.072965 AGTTGGGAAAGAGGTGCTCTG 59.927 52.381 0.00 0.00 40.28 3.35
1891 2071 1.349357 GAGTTGGGAAAGAGGTGCTCT 59.651 52.381 0.00 0.00 43.37 4.09
1892 2072 1.611936 GGAGTTGGGAAAGAGGTGCTC 60.612 57.143 0.00 0.00 0.00 4.26
1893 2073 0.402121 GGAGTTGGGAAAGAGGTGCT 59.598 55.000 0.00 0.00 0.00 4.40
1894 2074 0.110486 TGGAGTTGGGAAAGAGGTGC 59.890 55.000 0.00 0.00 0.00 5.01
1895 2075 1.142870 TGTGGAGTTGGGAAAGAGGTG 59.857 52.381 0.00 0.00 0.00 4.00
1896 2076 1.518367 TGTGGAGTTGGGAAAGAGGT 58.482 50.000 0.00 0.00 0.00 3.85
1897 2077 2.887151 ATGTGGAGTTGGGAAAGAGG 57.113 50.000 0.00 0.00 0.00 3.69
1898 2078 5.535753 AAAAATGTGGAGTTGGGAAAGAG 57.464 39.130 0.00 0.00 0.00 2.85
1917 2097 2.660572 TGGTGGAGCAGCAGTTAAAAA 58.339 42.857 0.00 0.00 36.93 1.94
1918 2098 2.356665 TGGTGGAGCAGCAGTTAAAA 57.643 45.000 0.00 0.00 36.93 1.52
1919 2099 1.953686 GTTGGTGGAGCAGCAGTTAAA 59.046 47.619 0.00 0.00 42.79 1.52
1920 2100 1.142870 AGTTGGTGGAGCAGCAGTTAA 59.857 47.619 0.00 0.00 42.79 2.01
1921 2101 0.764890 AGTTGGTGGAGCAGCAGTTA 59.235 50.000 0.00 0.00 42.79 2.24
1922 2102 0.536006 GAGTTGGTGGAGCAGCAGTT 60.536 55.000 0.00 0.00 42.79 3.16
1923 2103 1.072159 GAGTTGGTGGAGCAGCAGT 59.928 57.895 0.00 0.00 42.79 4.40
1924 2104 1.673665 GGAGTTGGTGGAGCAGCAG 60.674 63.158 0.00 0.00 42.79 4.24
1925 2105 2.431683 GGAGTTGGTGGAGCAGCA 59.568 61.111 0.00 0.00 40.20 4.41
1926 2106 2.743928 CGGAGTTGGTGGAGCAGC 60.744 66.667 0.00 0.00 0.00 5.25
1927 2107 2.046892 CCGGAGTTGGTGGAGCAG 60.047 66.667 0.00 0.00 0.00 4.24
1928 2108 3.636231 CCCGGAGTTGGTGGAGCA 61.636 66.667 0.73 0.00 0.00 4.26
1929 2109 3.316573 CTCCCGGAGTTGGTGGAGC 62.317 68.421 0.73 0.00 38.12 4.70
1930 2110 2.982130 CTCCCGGAGTTGGTGGAG 59.018 66.667 0.73 0.00 38.56 3.86
1931 2111 2.203182 ACTCCCGGAGTTGGTGGA 59.797 61.111 14.84 0.00 40.28 4.02
1932 2112 2.347490 CACTCCCGGAGTTGGTGG 59.653 66.667 18.03 2.33 41.37 4.61
1933 2113 2.172483 CTCCACTCCCGGAGTTGGTG 62.172 65.000 18.03 17.24 46.48 4.17
1934 2114 1.913762 CTCCACTCCCGGAGTTGGT 60.914 63.158 18.03 0.00 46.48 3.67
1935 2115 2.982130 CTCCACTCCCGGAGTTGG 59.018 66.667 18.03 20.14 46.48 3.77
1940 2120 3.516780 AGGTACTCCACTCCCGGA 58.483 61.111 0.73 0.00 35.89 5.14
1952 2132 0.685458 TAGGGCCTGTTCGGAGGTAC 60.685 60.000 18.53 0.00 35.29 3.34
1953 2133 0.041535 TTAGGGCCTGTTCGGAGGTA 59.958 55.000 18.53 0.00 35.29 3.08
1954 2134 0.838987 TTTAGGGCCTGTTCGGAGGT 60.839 55.000 18.53 0.00 35.29 3.85
1955 2135 0.546598 ATTTAGGGCCTGTTCGGAGG 59.453 55.000 18.53 0.00 36.03 4.30
1956 2136 2.420058 AATTTAGGGCCTGTTCGGAG 57.580 50.000 18.53 0.00 33.16 4.63
1957 2137 2.572556 TGTAATTTAGGGCCTGTTCGGA 59.427 45.455 18.53 0.00 33.16 4.55
1958 2138 2.681344 GTGTAATTTAGGGCCTGTTCGG 59.319 50.000 18.53 0.00 0.00 4.30
1959 2139 2.350498 CGTGTAATTTAGGGCCTGTTCG 59.650 50.000 18.53 5.86 0.00 3.95
1960 2140 2.681344 CCGTGTAATTTAGGGCCTGTTC 59.319 50.000 18.53 1.26 0.00 3.18
1961 2141 2.718563 CCGTGTAATTTAGGGCCTGTT 58.281 47.619 18.53 10.93 0.00 3.16
1962 2142 1.680860 GCCGTGTAATTTAGGGCCTGT 60.681 52.381 18.53 0.00 41.86 4.00
1963 2143 1.021968 GCCGTGTAATTTAGGGCCTG 58.978 55.000 18.53 0.00 41.86 4.85
1964 2144 3.489391 GCCGTGTAATTTAGGGCCT 57.511 52.632 12.58 12.58 41.86 5.19
1966 2146 3.064408 GTGTAAGCCGTGTAATTTAGGGC 59.936 47.826 14.67 14.67 46.55 5.19
1967 2147 4.093850 GTGTGTAAGCCGTGTAATTTAGGG 59.906 45.833 0.00 0.00 0.00 3.53
1968 2148 4.093850 GGTGTGTAAGCCGTGTAATTTAGG 59.906 45.833 0.00 0.00 0.00 2.69
1969 2149 4.933400 AGGTGTGTAAGCCGTGTAATTTAG 59.067 41.667 0.00 0.00 0.00 1.85
1970 2150 4.897140 AGGTGTGTAAGCCGTGTAATTTA 58.103 39.130 0.00 0.00 0.00 1.40
1971 2151 3.746940 AGGTGTGTAAGCCGTGTAATTT 58.253 40.909 0.00 0.00 0.00 1.82
1972 2152 3.412237 AGGTGTGTAAGCCGTGTAATT 57.588 42.857 0.00 0.00 0.00 1.40
1973 2153 3.412237 AAGGTGTGTAAGCCGTGTAAT 57.588 42.857 0.00 0.00 0.00 1.89
1974 2154 2.873472 CAAAGGTGTGTAAGCCGTGTAA 59.127 45.455 0.00 0.00 0.00 2.41
1975 2155 2.485903 CAAAGGTGTGTAAGCCGTGTA 58.514 47.619 0.00 0.00 0.00 2.90
1976 2156 1.305201 CAAAGGTGTGTAAGCCGTGT 58.695 50.000 0.00 0.00 0.00 4.49
1977 2157 0.040425 GCAAAGGTGTGTAAGCCGTG 60.040 55.000 0.00 0.00 0.00 4.94
1978 2158 0.179029 AGCAAAGGTGTGTAAGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
1979 2159 1.803334 TAGCAAAGGTGTGTAAGCCG 58.197 50.000 0.00 0.00 0.00 5.52
1990 2170 3.129287 AGGCAACATCGAAATAGCAAAGG 59.871 43.478 0.00 0.00 41.41 3.11
2042 2222 1.816224 CACCGGTACCCCATTTGAAAG 59.184 52.381 6.87 0.00 0.00 2.62
2215 2395 6.057533 TGTGATCCATATGACACATCCTTTC 58.942 40.000 18.82 1.72 38.14 2.62
2339 2519 7.221452 CAGAAAGAAACCATTTTGACAACAGAG 59.779 37.037 0.00 0.00 0.00 3.35
2407 2587 4.338879 AGATTGGACCAATTCCTCTGTTG 58.661 43.478 20.71 0.00 46.10 3.33
2424 2606 7.008440 TGATGAAGATTGAACGCTAAGATTG 57.992 36.000 0.00 0.00 0.00 2.67
2486 2668 0.365523 CCAGTGTAAATGTCGCGTCG 59.634 55.000 5.77 0.00 0.00 5.12
2491 2673 6.255020 GGTTAGACATACCAGTGTAAATGTCG 59.745 42.308 17.27 0.00 39.94 4.35
2540 2722 3.030291 AGAAGTGCCCAAATTGTGTGAA 58.970 40.909 0.00 0.00 0.00 3.18
2730 2913 3.495331 TCATGTACTGGTGCCAAAACAT 58.505 40.909 10.54 10.54 34.04 2.71
2734 2917 3.719268 AGATCATGTACTGGTGCCAAA 57.281 42.857 0.00 0.00 0.00 3.28
2771 2954 4.133820 AGATGAGAGTGACGATCAGGTAG 58.866 47.826 0.00 0.00 0.00 3.18
2880 3063 8.523658 TCTCATACTCAGTATACAATATGGTGC 58.476 37.037 5.50 0.00 0.00 5.01
2894 3077 6.483974 CCACGTAGACTAATCTCATACTCAGT 59.516 42.308 0.00 0.00 36.29 3.41
2921 3104 3.377573 ACCACGGGCTAGGAAAACTATA 58.622 45.455 0.00 0.00 0.00 1.31
2937 3120 3.522553 GAGGGAGTATTTCAGAACCACG 58.477 50.000 0.00 0.00 0.00 4.94
3014 3197 9.866936 GTGAATAAACACATTAAAACGTGTCTA 57.133 29.630 8.57 1.78 45.37 2.59
3015 3198 8.617809 AGTGAATAAACACATTAAAACGTGTCT 58.382 29.630 8.57 0.00 45.37 3.41
3027 3210 7.117812 CGGACTAAACTGAGTGAATAAACACAT 59.882 37.037 0.00 0.00 42.45 3.21
3044 3227 8.355169 TCAATATGGACTACATACGGACTAAAC 58.645 37.037 0.00 0.00 44.41 2.01
3260 3443 5.476945 ACTTTTCCCTGACATATGGAAACAC 59.523 40.000 7.80 0.00 45.27 3.32
3381 3564 3.412386 GGTCTTCTGCCTTGAAGCTTAA 58.588 45.455 0.00 0.00 42.15 1.85
3451 3634 8.657074 TGTCATTATAAAACCGTCTCTAATGG 57.343 34.615 0.00 0.00 40.24 3.16
3802 3985 7.412237 GCTGAATGCATTAAAATGTGGAACTTC 60.412 37.037 12.97 0.00 42.31 3.01
3873 4056 9.152595 TCAAAAGGCAACGTTTAAAGTAAAAAT 57.847 25.926 0.00 0.00 46.84 1.82
3888 4073 2.093711 ACCCTGTTTGTCAAAAGGCAAC 60.094 45.455 15.58 0.19 0.00 4.17
4027 4212 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
4028 4213 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
4029 4214 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
4030 4215 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
4031 4216 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
4032 4217 5.145759 CAAAAGGCTTTGTTGTTGTTGTTG 58.854 37.500 14.19 0.00 37.69 3.33
4033 4218 5.355467 CAAAAGGCTTTGTTGTTGTTGTT 57.645 34.783 14.19 0.00 37.69 2.83
4059 4244 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
4060 4245 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
4061 4246 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
4062 4247 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
4063 4248 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
4064 4249 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
4065 4250 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
4066 4251 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
4067 4252 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
4068 4253 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
4069 4254 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
4070 4255 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
4071 4256 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
4072 4257 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
4073 4258 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
4074 4259 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
4075 4260 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
4076 4261 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
4077 4262 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
4078 4263 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
4079 4264 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
4080 4265 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
4081 4266 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
4082 4267 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
4083 4268 2.540101 CGCGAGATCTTATGGGTTTCAC 59.460 50.000 0.00 0.00 0.00 3.18
4084 4269 2.429250 TCGCGAGATCTTATGGGTTTCA 59.571 45.455 3.71 0.00 33.31 2.69
4085 4270 2.795470 GTCGCGAGATCTTATGGGTTTC 59.205 50.000 10.24 0.00 45.19 2.78
4086 4271 2.483188 GGTCGCGAGATCTTATGGGTTT 60.483 50.000 10.24 0.00 45.19 3.27
4087 4272 1.068741 GGTCGCGAGATCTTATGGGTT 59.931 52.381 10.24 0.00 45.19 4.11
4088 4273 0.674534 GGTCGCGAGATCTTATGGGT 59.325 55.000 10.24 0.00 45.19 4.51
4089 4274 0.673985 TGGTCGCGAGATCTTATGGG 59.326 55.000 10.24 0.00 43.23 4.00
4090 4275 2.128035 GTTGGTCGCGAGATCTTATGG 58.872 52.381 10.24 0.00 43.23 2.74
4091 4276 3.046390 GAGTTGGTCGCGAGATCTTATG 58.954 50.000 10.24 0.00 43.23 1.90
4092 4277 2.688446 TGAGTTGGTCGCGAGATCTTAT 59.312 45.455 10.24 0.00 43.23 1.73
4093 4278 2.089201 TGAGTTGGTCGCGAGATCTTA 58.911 47.619 10.24 0.00 43.23 2.10
4094 4279 0.888619 TGAGTTGGTCGCGAGATCTT 59.111 50.000 10.24 0.00 43.23 2.40
4095 4280 1.107114 ATGAGTTGGTCGCGAGATCT 58.893 50.000 10.24 5.84 43.23 2.75
4096 4281 1.203928 CATGAGTTGGTCGCGAGATC 58.796 55.000 10.24 2.63 45.19 2.75
4097 4282 0.179100 CCATGAGTTGGTCGCGAGAT 60.179 55.000 10.24 0.00 45.19 2.75
4098 4283 1.215382 CCATGAGTTGGTCGCGAGA 59.785 57.895 10.24 0.00 40.99 4.04
4099 4284 3.786101 CCATGAGTTGGTCGCGAG 58.214 61.111 10.24 0.00 40.99 5.03
4107 4292 1.471119 AATGCCAGAGCCATGAGTTG 58.529 50.000 0.00 0.00 38.69 3.16
4108 4293 3.370840 TTAATGCCAGAGCCATGAGTT 57.629 42.857 0.00 0.00 38.69 3.01
4109 4294 3.370840 TTTAATGCCAGAGCCATGAGT 57.629 42.857 0.00 0.00 38.69 3.41
4110 4295 4.724074 TTTTTAATGCCAGAGCCATGAG 57.276 40.909 0.00 0.00 38.69 2.90
4373 4558 7.254692 GGTGTCTACCTGACTCAAAAGTTTAAC 60.255 40.741 0.00 0.00 45.54 2.01
4521 4714 3.429543 AGCTGCGCAAAATACATTGTTTG 59.570 39.130 13.05 0.00 37.70 2.93
4559 4752 0.750546 GGGAGGCGTATGGGGAAAAC 60.751 60.000 0.00 0.00 0.00 2.43
4564 4757 2.192175 GTTGGGAGGCGTATGGGG 59.808 66.667 0.00 0.00 0.00 4.96
4566 4759 2.192175 GGGTTGGGAGGCGTATGG 59.808 66.667 0.00 0.00 0.00 2.74
4567 4760 1.029947 GTTGGGTTGGGAGGCGTATG 61.030 60.000 0.00 0.00 0.00 2.39
4616 4811 9.974980 TTATTTTGGTTTTATGAACTCTGTTCC 57.025 29.630 7.81 0.00 0.00 3.62
4629 4824 7.122138 ACGTTCCCCTTTTATTTTGGTTTTA 57.878 32.000 0.00 0.00 0.00 1.52
4630 4825 5.991861 ACGTTCCCCTTTTATTTTGGTTTT 58.008 33.333 0.00 0.00 0.00 2.43
4702 4915 5.012239 AGCTTGAGAATTTTGCCATACTGA 58.988 37.500 0.00 0.00 0.00 3.41
5018 5238 3.885901 TCATCTATCACCTCTGTTCCGAG 59.114 47.826 0.00 0.00 0.00 4.63
5102 5322 3.539604 GAGAGCTGGCATATCACAAGTT 58.460 45.455 0.00 0.00 0.00 2.66
5154 5374 0.674534 GTAGGGCTCGATGGGTACAG 59.325 60.000 0.00 0.00 0.00 2.74
5164 5384 2.540101 CGAAAGCAATAAGTAGGGCTCG 59.460 50.000 0.00 0.00 35.11 5.03
5166 5386 3.629142 ACGAAAGCAATAAGTAGGGCT 57.371 42.857 0.00 0.00 38.45 5.19
5194 5414 5.440207 TTAATAAGTAGGGCTTTCGGGTT 57.560 39.130 0.00 0.00 38.57 4.11
5196 5416 6.059484 TCAATTAATAAGTAGGGCTTTCGGG 58.941 40.000 0.00 0.00 38.57 5.14
5216 5436 3.638627 TCGACATGTATCTCAGGCTCAAT 59.361 43.478 0.00 0.00 0.00 2.57
5231 5451 5.347093 GTGACCTATATGAGCAATCGACATG 59.653 44.000 0.00 0.00 0.00 3.21
5347 5570 0.909623 GGCAGCAGTAGGGTTAAGGA 59.090 55.000 0.00 0.00 0.00 3.36
5403 5630 9.748100 GAAGAGAAGAATCGTTTCAGTTTAATC 57.252 33.333 8.83 0.00 34.08 1.75
5554 5781 7.151308 GGTATATATAGATGCTAAGCCTGCAG 58.849 42.308 6.78 6.78 44.04 4.41
5576 5803 7.361457 AGAATAACATCAATCTTCTCGGGTA 57.639 36.000 0.00 0.00 0.00 3.69
5577 5804 6.240549 AGAATAACATCAATCTTCTCGGGT 57.759 37.500 0.00 0.00 0.00 5.28
5580 5807 7.901889 CACACAAGAATAACATCAATCTTCTCG 59.098 37.037 0.00 0.00 30.01 4.04
5593 5824 7.667043 TGAGTTATGGACACACAAGAATAAC 57.333 36.000 0.00 0.00 32.96 1.89
5632 5863 3.071874 TCTGGATGTGACCAAATGGAC 57.928 47.619 6.42 0.06 39.59 4.02
5644 5875 4.666512 ACAGCACCTTTTATTCTGGATGT 58.333 39.130 0.00 0.00 0.00 3.06
5650 5881 7.315890 GCTTCAATAACAGCACCTTTTATTCT 58.684 34.615 0.00 0.00 35.95 2.40
5677 5908 0.812811 TGATCATCGAGGCAGCTTGC 60.813 55.000 0.00 0.00 44.08 4.01
5709 5965 0.252479 CACAGGAGAGGAGCAATGCT 59.748 55.000 7.79 7.79 43.88 3.79
5756 6012 4.866486 CCATTTCAGCCAAAGTGATTAAGC 59.134 41.667 0.00 0.00 0.00 3.09
5761 6017 3.006110 CACACCATTTCAGCCAAAGTGAT 59.994 43.478 0.00 0.00 29.04 3.06
5765 6021 1.688197 ACCACACCATTTCAGCCAAAG 59.312 47.619 0.00 0.00 0.00 2.77
5768 6024 0.106268 ACACCACACCATTTCAGCCA 60.106 50.000 0.00 0.00 0.00 4.75
5784 6040 4.429108 ACCAACAAATAAACACAGCACAC 58.571 39.130 0.00 0.00 0.00 3.82
5839 6105 2.785713 AACGCAAGCACGGTTTATTT 57.214 40.000 0.00 0.00 45.62 1.40
5846 6112 2.381665 TTCGGAAAACGCAAGCACGG 62.382 55.000 0.00 0.00 43.86 4.94
5871 6137 3.607422 TCAATTCAGTGTGCGAACAAG 57.393 42.857 0.00 0.00 0.00 3.16
5877 6143 2.910482 CGGAAATTCAATTCAGTGTGCG 59.090 45.455 0.00 0.00 0.00 5.34
6011 6316 0.257039 GGAGTGATTGATGGGGTGCT 59.743 55.000 0.00 0.00 0.00 4.40
6012 6317 0.753111 GGGAGTGATTGATGGGGTGC 60.753 60.000 0.00 0.00 0.00 5.01
6016 6321 0.921896 AGTGGGGAGTGATTGATGGG 59.078 55.000 0.00 0.00 0.00 4.00
6048 6353 7.805542 TCAATCAAACAACATTACCACATAACG 59.194 33.333 0.00 0.00 0.00 3.18
6049 6354 9.638239 ATCAATCAAACAACATTACCACATAAC 57.362 29.630 0.00 0.00 0.00 1.89
6050 6355 9.853555 GATCAATCAAACAACATTACCACATAA 57.146 29.630 0.00 0.00 0.00 1.90
6051 6356 8.465999 GGATCAATCAAACAACATTACCACATA 58.534 33.333 0.00 0.00 0.00 2.29
6052 6357 7.178983 AGGATCAATCAAACAACATTACCACAT 59.821 33.333 0.00 0.00 0.00 3.21
6057 6362 6.529125 CAGCAGGATCAATCAAACAACATTAC 59.471 38.462 0.00 0.00 0.00 1.89
6062 6377 3.057033 AGCAGCAGGATCAATCAAACAAC 60.057 43.478 0.00 0.00 0.00 3.32
6070 6385 5.244626 ACACTTAAAAAGCAGCAGGATCAAT 59.755 36.000 0.00 0.00 0.00 2.57
6097 6412 9.820229 CACGAGCATGAAAACTTTTTATTACTA 57.180 29.630 0.00 0.00 0.00 1.82
6098 6413 8.349983 ACACGAGCATGAAAACTTTTTATTACT 58.650 29.630 0.00 0.00 0.00 2.24
6099 6414 8.502161 ACACGAGCATGAAAACTTTTTATTAC 57.498 30.769 0.00 0.00 0.00 1.89
6100 6415 8.346300 TGACACGAGCATGAAAACTTTTTATTA 58.654 29.630 0.00 0.00 0.00 0.98
6101 6416 7.199766 TGACACGAGCATGAAAACTTTTTATT 58.800 30.769 0.00 0.00 0.00 1.40
6102 6417 6.734137 TGACACGAGCATGAAAACTTTTTAT 58.266 32.000 0.00 0.00 0.00 1.40
6103 6418 6.125327 TGACACGAGCATGAAAACTTTTTA 57.875 33.333 0.00 0.00 0.00 1.52
6110 6425 2.083774 GGGATGACACGAGCATGAAAA 58.916 47.619 0.00 0.00 0.00 2.29
6113 6428 1.264045 TGGGGATGACACGAGCATGA 61.264 55.000 0.00 0.00 0.00 3.07
6135 6450 2.276472 TTGCACTGCAAACAACTGTC 57.724 45.000 14.21 0.00 45.96 3.51
6146 6461 3.243301 CCCATGATTGTAGATTGCACTGC 60.243 47.826 0.00 0.00 0.00 4.40
6147 6462 3.243301 GCCCATGATTGTAGATTGCACTG 60.243 47.826 0.00 0.00 0.00 3.66
6148 6463 2.954318 GCCCATGATTGTAGATTGCACT 59.046 45.455 0.00 0.00 0.00 4.40
6215 6530 4.052518 ATTTCCTGCTGGCCGGCT 62.053 61.111 35.60 13.30 0.00 5.52
6216 6531 3.830192 CATTTCCTGCTGGCCGGC 61.830 66.667 30.57 30.57 0.00 6.13
6239 6554 2.347114 CCAGATGTGTGGTGCGGA 59.653 61.111 0.00 0.00 32.32 5.54
6269 6608 1.745489 GATCAGGTGTTGGTCGGCC 60.745 63.158 0.00 0.00 0.00 6.13
6278 6617 1.073923 GGTCAAACTGGGATCAGGTGT 59.926 52.381 0.00 0.00 40.66 4.16
6280 6619 0.324943 CGGTCAAACTGGGATCAGGT 59.675 55.000 0.00 0.00 44.02 4.00
6281 6620 0.392998 CCGGTCAAACTGGGATCAGG 60.393 60.000 0.00 0.00 44.99 3.86
6283 6622 1.002624 GCCGGTCAAACTGGGATCA 60.003 57.895 1.90 0.00 44.90 2.92
6285 6624 1.863155 ATGGCCGGTCAAACTGGGAT 61.863 55.000 15.45 0.00 44.90 3.85
6341 6680 2.341543 CTGATCTGATCGCCGGGG 59.658 66.667 13.31 13.31 0.00 5.73
6432 6773 1.680249 GGAGGATGTTCAGACTTGCCC 60.680 57.143 0.00 0.00 0.00 5.36
6476 6817 1.152504 TCACCACCGGTCACCACTA 60.153 57.895 2.59 0.00 31.02 2.74
6477 6818 2.445085 TCACCACCGGTCACCACT 60.445 61.111 2.59 0.00 31.02 4.00
6478 6819 2.280592 GTCACCACCGGTCACCAC 60.281 66.667 2.59 0.00 31.02 4.16
6479 6820 3.918977 CGTCACCACCGGTCACCA 61.919 66.667 2.59 0.00 31.02 4.17
6504 6845 0.033208 TTCAATGGTGATCCCCAGGC 60.033 55.000 2.58 0.00 38.07 4.85
6511 6852 1.017387 GGTCCGCTTCAATGGTGATC 58.983 55.000 0.00 0.00 32.48 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.