Multiple sequence alignment - TraesCS4B01G258800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G258800 chr4B 100.000 5402 0 0 1 5402 525300661 525306062 0.000000e+00 9976.0
1 TraesCS4B01G258800 chr4B 98.029 3855 32 10 1589 5402 525392442 525388591 0.000000e+00 6658.0
2 TraesCS4B01G258800 chr4B 97.395 3531 20 13 1548 5074 525270706 525267244 0.000000e+00 5945.0
3 TraesCS4B01G258800 chr4B 94.323 1550 40 14 1 1547 525272244 525270740 0.000000e+00 2331.0
4 TraesCS4B01G258800 chr4B 94.835 1239 31 12 1 1237 525394296 525393089 0.000000e+00 1903.0
5 TraesCS4B01G258800 chr4B 92.308 312 6 1 1236 1547 525393007 525392714 1.390000e-115 427.0
6 TraesCS4B01G258800 chr4B 91.318 311 10 1 5092 5402 525266944 525266651 5.040000e-110 409.0
7 TraesCS4B01G258800 chr4B 93.043 115 7 1 3794 3907 525268176 525268290 3.350000e-37 167.0
8 TraesCS4B01G258800 chr4B 93.043 115 7 1 3794 3907 525389930 525390044 3.350000e-37 167.0
9 TraesCS4B01G258800 chr4B 92.174 115 8 1 3794 3907 525304753 525304639 1.560000e-35 161.0
10 TraesCS4B01G258800 chr4B 92.105 76 6 0 5092 5167 525388971 525388896 2.060000e-19 108.0
11 TraesCS4B01G258800 chr4B 96.078 51 2 0 4726 4776 525267541 525267491 3.470000e-12 84.2
12 TraesCS4B01G258800 chr4B 94.118 51 3 0 4777 4827 525267592 525267542 1.610000e-10 78.7
13 TraesCS4B01G258800 chr4B 94.118 51 3 0 4777 4827 525305386 525305436 1.610000e-10 78.7
14 TraesCS4B01G258800 chr4B 94.118 51 3 0 4726 4776 525305437 525305487 1.610000e-10 78.7
15 TraesCS4B01G258800 chr4B 94.118 51 3 0 4726 4776 525389249 525389199 1.610000e-10 78.7
16 TraesCS4B01G258800 chr4B 94.000 50 2 1 1548 1596 525392679 525392630 2.090000e-09 75.0
17 TraesCS4B01G258800 chr2A 87.148 2132 201 36 1623 3705 695299648 695301755 0.000000e+00 2351.0
18 TraesCS4B01G258800 chr2A 87.279 283 30 6 4450 4732 695305551 695305827 8.730000e-83 318.0
19 TraesCS4B01G258800 chr2A 94.444 198 10 1 5203 5399 676711031 676711228 2.440000e-78 303.0
20 TraesCS4B01G258800 chr2A 84.513 226 19 6 952 1164 695299321 695299543 5.480000e-50 209.0
21 TraesCS4B01G258800 chr2D 85.915 2059 210 39 1692 3706 555908422 555910444 0.000000e+00 2122.0
22 TraesCS4B01G258800 chr2D 88.629 299 33 1 4434 4732 555911213 555911510 3.980000e-96 363.0
23 TraesCS4B01G258800 chr2D 90.254 236 12 2 5178 5402 26447301 26447536 1.140000e-76 298.0
24 TraesCS4B01G258800 chr2D 90.050 201 18 2 3907 4106 325325588 325325389 5.370000e-65 259.0
25 TraesCS4B01G258800 chr2D 88.889 144 13 3 143 285 14459695 14459554 2.000000e-39 174.0
26 TraesCS4B01G258800 chr2D 93.043 115 7 1 3793 3906 26528254 26528368 3.350000e-37 167.0
27 TraesCS4B01G258800 chr2B 87.129 1787 171 34 1564 3308 662680464 662682233 0.000000e+00 1971.0
28 TraesCS4B01G258800 chr2B 89.521 334 35 0 3372 3705 662682239 662682572 1.800000e-114 424.0
29 TraesCS4B01G258800 chr2B 82.192 292 19 14 4091 4353 662682696 662682983 2.530000e-53 220.0
30 TraesCS4B01G258800 chr5D 88.629 299 34 0 4434 4732 472384565 472384863 1.110000e-96 364.0
31 TraesCS4B01G258800 chr5D 91.026 234 10 5 5180 5402 363005420 363005653 6.800000e-79 305.0
32 TraesCS4B01G258800 chr5D 93.532 201 12 1 5203 5402 134489785 134489585 1.140000e-76 298.0
33 TraesCS4B01G258800 chr5D 93.532 201 12 1 5203 5402 320660573 320660773 1.140000e-76 298.0
34 TraesCS4B01G258800 chr5D 90.213 235 12 3 5177 5400 530733134 530733368 4.090000e-76 296.0
35 TraesCS4B01G258800 chr3D 95.025 201 9 1 5203 5402 68839754 68839954 1.130000e-81 315.0
36 TraesCS4B01G258800 chr3D 89.451 237 14 5 5177 5402 579163245 579163481 6.850000e-74 289.0
37 TraesCS4B01G258800 chr3D 88.442 199 21 2 3898 4094 124059579 124059381 6.990000e-59 239.0
38 TraesCS4B01G258800 chr3D 85.890 163 15 6 123 281 604601320 604601162 3.350000e-37 167.0
39 TraesCS4B01G258800 chr3D 90.476 126 9 3 160 284 601236517 601236394 4.330000e-36 163.0
40 TraesCS4B01G258800 chr3D 78.512 121 22 4 5168 5286 141235278 141235160 5.800000e-10 76.8
41 TraesCS4B01G258800 chr1A 94.527 201 10 1 5203 5402 104232458 104232258 5.250000e-80 309.0
42 TraesCS4B01G258800 chr1A 95.349 43 2 0 300 342 99297704 99297746 9.710000e-08 69.4
43 TraesCS4B01G258800 chr1D 90.717 237 11 2 5177 5402 377957580 377957816 6.800000e-79 305.0
44 TraesCS4B01G258800 chr1D 89.231 195 18 2 3904 4097 486144675 486144867 1.940000e-59 241.0
45 TraesCS4B01G258800 chr7D 90.254 236 12 5 5178 5402 604446403 604446638 1.140000e-76 298.0
46 TraesCS4B01G258800 chr7D 87.857 140 12 5 135 272 453668939 453668803 5.600000e-35 159.0
47 TraesCS4B01G258800 chr7D 88.189 127 13 2 152 278 600079507 600079383 3.370000e-32 150.0
48 TraesCS4B01G258800 chr7D 86.154 65 7 2 306 368 530085557 530085621 9.710000e-08 69.4
49 TraesCS4B01G258800 chr7D 84.286 70 9 2 305 374 616950097 616950030 3.490000e-07 67.6
50 TraesCS4B01G258800 chr5A 88.980 245 14 7 5170 5402 673402125 673401882 1.900000e-74 291.0
51 TraesCS4B01G258800 chr5A 84.564 149 18 4 151 298 81473384 81473240 5.640000e-30 143.0
52 TraesCS4B01G258800 chr7A 90.863 197 17 1 3898 4093 293302436 293302632 4.150000e-66 263.0
53 TraesCS4B01G258800 chr7A 92.174 115 8 1 3794 3907 251840838 251840724 1.560000e-35 161.0
54 TraesCS4B01G258800 chr7A 84.932 73 7 4 299 368 609653037 609653108 2.700000e-08 71.3
55 TraesCS4B01G258800 chr4A 91.005 189 16 1 3907 4094 89430988 89430800 2.500000e-63 254.0
56 TraesCS4B01G258800 chr4A 93.878 49 2 1 301 349 608078147 608078194 7.510000e-09 73.1
57 TraesCS4B01G258800 chr6D 90.374 187 17 1 3913 4098 464536720 464536534 1.500000e-60 244.0
58 TraesCS4B01G258800 chr6D 89.474 57 3 2 289 342 31762118 31762062 9.710000e-08 69.4
59 TraesCS4B01G258800 chr4D 87.864 206 21 4 3898 4101 375175232 375175029 6.990000e-59 239.0
60 TraesCS4B01G258800 chr6A 93.966 116 5 2 3794 3907 596548467 596548582 2.000000e-39 174.0
61 TraesCS4B01G258800 chr7B 91.379 116 9 1 3793 3907 61851955 61851840 2.010000e-34 158.0
62 TraesCS4B01G258800 chr3B 88.976 127 12 2 153 279 824163810 824163934 7.240000e-34 156.0
63 TraesCS4B01G258800 chr1B 93.878 49 2 1 301 349 433452989 433452942 7.510000e-09 73.1
64 TraesCS4B01G258800 chr3A 93.333 45 2 1 1761 1805 693109809 693109852 1.260000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G258800 chr4B 525300661 525306062 5401 False 3377.800000 9976 96.078667 1 5402 3 chr4B.!!$F3 5401
1 TraesCS4B01G258800 chr4B 525266651 525272244 5593 True 1769.580000 5945 94.646400 1 5402 5 chr4B.!!$R2 5401
2 TraesCS4B01G258800 chr4B 525388591 525394296 5705 True 1541.616667 6658 94.232500 1 5402 6 chr4B.!!$R3 5401
3 TraesCS4B01G258800 chr2A 695299321 695305827 6506 False 959.333333 2351 86.313333 952 4732 3 chr2A.!!$F2 3780
4 TraesCS4B01G258800 chr2D 555908422 555911510 3088 False 1242.500000 2122 87.272000 1692 4732 2 chr2D.!!$F3 3040
5 TraesCS4B01G258800 chr2B 662680464 662682983 2519 False 871.666667 1971 86.280667 1564 4353 3 chr2B.!!$F1 2789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 499 0.106708 TCTTGGGCGATACATGAGGC 59.893 55.000 0.00 0.0 0.0 4.70 F
595 598 0.960364 ACACGGTGTCCATGCAATCC 60.960 55.000 8.21 0.0 0.0 3.01 F
1311 1409 0.536460 TCCACAGAAAACGGAAGGGC 60.536 55.000 0.00 0.0 0.0 5.19 F
1474 1572 1.306568 GCCCCCTCCTCTCTGTCTT 60.307 63.158 0.00 0.0 0.0 3.01 F
1504 1602 2.026262 TGGAGTCTTAGGGAATTGCACC 60.026 50.000 0.00 0.0 0.0 5.01 F
4284 4818 3.325870 CACAAAGCTTACATGTCTCCGA 58.674 45.455 0.00 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 1409 0.964358 CAAGGGAAGGCAAGCTCCTG 60.964 60.000 0.00 0.00 36.38 3.86 R
1474 1572 2.489971 CCTAAGACTCCAAACACGCAA 58.510 47.619 0.00 0.00 0.00 4.85 R
4285 4819 4.765339 TGTAGCAAACTAGTAGCTCAGACA 59.235 41.667 21.83 18.10 39.68 3.41 R
4286 4820 5.312120 TGTAGCAAACTAGTAGCTCAGAC 57.688 43.478 21.83 16.25 39.68 3.51 R
4287 4821 6.531503 AATGTAGCAAACTAGTAGCTCAGA 57.468 37.500 21.83 10.59 39.68 3.27 R
5236 9761 0.890542 GGCCACACAGTGAATGCAGA 60.891 55.000 7.81 0.00 35.23 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
329 331 9.822185 GGTACTTCCTCCGTAAAGAAATATAAA 57.178 33.333 0.00 0.00 0.00 1.40
335 337 7.550196 TCCTCCGTAAAGAAATATAAAAGCGTT 59.450 33.333 0.00 0.00 0.00 4.84
336 338 8.179615 CCTCCGTAAAGAAATATAAAAGCGTTT 58.820 33.333 2.53 2.53 0.00 3.60
393 395 8.088981 AGAGCGTTTAGATCTCTTTTCTTTACA 58.911 33.333 0.00 0.00 42.92 2.41
420 422 7.872061 TGGAGTATGTTGTAATGATATCCCT 57.128 36.000 0.00 0.00 0.00 4.20
446 448 3.214697 TGCGTTCGAAATACGGTTCTA 57.785 42.857 9.91 0.00 42.82 2.10
466 468 2.092323 ACCTCGTCATGAGTTCATCGA 58.908 47.619 0.00 0.00 43.64 3.59
497 499 0.106708 TCTTGGGCGATACATGAGGC 59.893 55.000 0.00 0.00 0.00 4.70
513 515 3.127533 GCGCACTCCATCACCACC 61.128 66.667 0.30 0.00 0.00 4.61
514 516 2.347114 CGCACTCCATCACCACCA 59.653 61.111 0.00 0.00 0.00 4.17
516 518 1.371337 CGCACTCCATCACCACCATG 61.371 60.000 0.00 0.00 0.00 3.66
570 573 1.475034 GGGACGCATAAATCTGCAGGA 60.475 52.381 15.13 0.57 42.40 3.86
571 574 1.869767 GGACGCATAAATCTGCAGGAG 59.130 52.381 15.13 0.39 42.40 3.69
572 575 2.483714 GGACGCATAAATCTGCAGGAGA 60.484 50.000 15.13 0.00 42.40 3.71
573 576 2.541762 GACGCATAAATCTGCAGGAGAC 59.458 50.000 15.13 0.00 42.40 3.36
578 581 4.763073 CATAAATCTGCAGGAGACAGACA 58.237 43.478 15.13 0.00 46.38 3.41
595 598 0.960364 ACACGGTGTCCATGCAATCC 60.960 55.000 8.21 0.00 0.00 3.01
598 601 1.307647 GGTGTCCATGCAATCCCCT 59.692 57.895 0.00 0.00 0.00 4.79
829 832 1.468914 GGGCCTGCTTCTTTCTTTACG 59.531 52.381 0.84 0.00 0.00 3.18
866 870 8.227507 AGCTGTCATATAATCACCCCTAAAAAT 58.772 33.333 0.00 0.00 0.00 1.82
933 937 9.161629 ACAAAAACAAAAAGAATAGAAACCCTG 57.838 29.630 0.00 0.00 0.00 4.45
1275 1373 1.410932 CGATCCAACTCCTCTCTCCCT 60.411 57.143 0.00 0.00 0.00 4.20
1311 1409 0.536460 TCCACAGAAAACGGAAGGGC 60.536 55.000 0.00 0.00 0.00 5.19
1474 1572 1.306568 GCCCCCTCCTCTCTGTCTT 60.307 63.158 0.00 0.00 0.00 3.01
1504 1602 2.026262 TGGAGTCTTAGGGAATTGCACC 60.026 50.000 0.00 0.00 0.00 5.01
4284 4818 3.325870 CACAAAGCTTACATGTCTCCGA 58.674 45.455 0.00 0.00 0.00 4.55
4285 4819 3.935203 CACAAAGCTTACATGTCTCCGAT 59.065 43.478 0.00 0.00 0.00 4.18
4286 4820 3.935203 ACAAAGCTTACATGTCTCCGATG 59.065 43.478 0.00 0.00 0.00 3.84
4287 4821 3.895232 AAGCTTACATGTCTCCGATGT 57.105 42.857 0.00 0.00 37.75 3.06
4288 4822 3.444703 AGCTTACATGTCTCCGATGTC 57.555 47.619 0.00 0.00 35.62 3.06
4289 4823 3.027412 AGCTTACATGTCTCCGATGTCT 58.973 45.455 0.00 0.00 35.62 3.41
4290 4824 3.119291 GCTTACATGTCTCCGATGTCTG 58.881 50.000 0.00 0.00 35.62 3.51
4291 4825 3.181486 GCTTACATGTCTCCGATGTCTGA 60.181 47.826 0.00 0.00 35.62 3.27
4292 4826 4.605968 CTTACATGTCTCCGATGTCTGAG 58.394 47.826 0.00 0.00 35.62 3.35
4293 4827 1.135915 ACATGTCTCCGATGTCTGAGC 59.864 52.381 0.00 0.00 27.16 4.26
4294 4828 1.408340 CATGTCTCCGATGTCTGAGCT 59.592 52.381 0.00 0.00 0.00 4.09
4295 4829 2.420058 TGTCTCCGATGTCTGAGCTA 57.580 50.000 0.00 0.00 0.00 3.32
4296 4830 2.017782 TGTCTCCGATGTCTGAGCTAC 58.982 52.381 0.00 0.00 0.00 3.58
4297 4831 2.294074 GTCTCCGATGTCTGAGCTACT 58.706 52.381 0.00 0.00 0.00 2.57
4298 4832 3.118371 TGTCTCCGATGTCTGAGCTACTA 60.118 47.826 0.00 0.00 0.00 1.82
4299 4833 3.496884 GTCTCCGATGTCTGAGCTACTAG 59.503 52.174 0.00 0.00 0.00 2.57
4300 4834 3.134985 TCTCCGATGTCTGAGCTACTAGT 59.865 47.826 0.00 0.00 0.00 2.57
4301 4835 3.880490 CTCCGATGTCTGAGCTACTAGTT 59.120 47.826 0.00 0.00 0.00 2.24
4302 4836 4.270834 TCCGATGTCTGAGCTACTAGTTT 58.729 43.478 0.00 0.00 0.00 2.66
4303 4837 4.096532 TCCGATGTCTGAGCTACTAGTTTG 59.903 45.833 0.00 0.00 0.00 2.93
4304 4838 3.794028 CGATGTCTGAGCTACTAGTTTGC 59.206 47.826 0.00 6.57 0.00 3.68
4305 4839 4.439426 CGATGTCTGAGCTACTAGTTTGCT 60.439 45.833 18.85 18.85 40.02 3.91
4306 4840 5.220873 CGATGTCTGAGCTACTAGTTTGCTA 60.221 44.000 18.82 7.45 37.16 3.49
4307 4841 5.312120 TGTCTGAGCTACTAGTTTGCTAC 57.688 43.478 18.82 14.90 37.16 3.58
4308 4842 4.765339 TGTCTGAGCTACTAGTTTGCTACA 59.235 41.667 18.82 16.67 37.16 2.74
4309 4843 5.419155 TGTCTGAGCTACTAGTTTGCTACAT 59.581 40.000 18.82 2.47 37.16 2.29
4310 4844 6.071334 TGTCTGAGCTACTAGTTTGCTACATT 60.071 38.462 18.82 2.16 37.16 2.71
4311 4845 7.122204 TGTCTGAGCTACTAGTTTGCTACATTA 59.878 37.037 18.82 7.31 37.16 1.90
5070 9313 2.034053 GTCTGCCTCTCCTACTCAATCG 59.966 54.545 0.00 0.00 0.00 3.34
5236 9761 4.350368 AGAATTTGGCCCGTTTGATTTT 57.650 36.364 0.00 0.00 0.00 1.82
5251 9776 5.518848 TTGATTTTCTGCATTCACTGTGT 57.481 34.783 7.79 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 89 1.226746 AAGTCTGCACGTTTGGCTAC 58.773 50.000 0.00 0.00 0.00 3.58
218 220 9.396022 ACTTTTCATAATTCTCCATACGTCATT 57.604 29.630 0.00 0.00 0.00 2.57
219 221 8.964476 ACTTTTCATAATTCTCCATACGTCAT 57.036 30.769 0.00 0.00 0.00 3.06
297 299 7.243604 TCTTTACGGAGGAAGTACCATTTAA 57.756 36.000 0.00 0.00 42.04 1.52
335 337 8.244802 GCTCTTATATGCGTTTAGGAGATCTAA 58.755 37.037 16.32 0.00 36.26 2.10
336 338 7.414208 CGCTCTTATATGCGTTTAGGAGATCTA 60.414 40.741 16.32 0.00 46.09 1.98
337 339 6.623986 CGCTCTTATATGCGTTTAGGAGATCT 60.624 42.308 16.32 0.00 46.09 2.75
338 340 5.513495 CGCTCTTATATGCGTTTAGGAGATC 59.487 44.000 16.32 2.79 46.09 2.75
393 395 8.543774 GGGATATCATTACAACATACTCCATCT 58.456 37.037 4.83 0.00 0.00 2.90
420 422 2.566036 CGTATTTCGAACGCAAGCAAA 58.434 42.857 0.00 0.00 42.86 3.68
497 499 1.078214 ATGGTGGTGATGGAGTGCG 60.078 57.895 0.00 0.00 0.00 5.34
543 546 2.630580 AGATTTATGCGTCCCTCTCCTC 59.369 50.000 0.00 0.00 0.00 3.71
570 573 0.318441 CATGGACACCGTGTCTGTCT 59.682 55.000 26.73 9.89 46.19 3.41
571 574 1.291877 GCATGGACACCGTGTCTGTC 61.292 60.000 26.73 13.83 46.19 3.51
572 575 1.301716 GCATGGACACCGTGTCTGT 60.302 57.895 26.73 15.20 46.19 3.41
573 576 0.884259 TTGCATGGACACCGTGTCTG 60.884 55.000 26.73 20.00 46.19 3.51
578 581 1.378514 GGGATTGCATGGACACCGT 60.379 57.895 0.00 0.00 0.00 4.83
595 598 3.930012 GCGAATCGGGAGGGAGGG 61.930 72.222 4.35 0.00 0.00 4.30
598 601 3.467226 GTGGCGAATCGGGAGGGA 61.467 66.667 4.35 0.00 0.00 4.20
866 870 9.944376 GCTAGGGATTATATGACAGATTTTGTA 57.056 33.333 0.00 0.00 41.05 2.41
1275 1373 6.720309 TCTGTGGATTTTGACATGGAGATTA 58.280 36.000 0.00 0.00 0.00 1.75
1311 1409 0.964358 CAAGGGAAGGCAAGCTCCTG 60.964 60.000 0.00 0.00 36.38 3.86
1474 1572 2.489971 CCTAAGACTCCAAACACGCAA 58.510 47.619 0.00 0.00 0.00 4.85
1504 1602 5.404466 TCCAATTTGACTAATTTGCCCTG 57.596 39.130 0.00 0.00 34.19 4.45
4284 4818 5.419155 TGTAGCAAACTAGTAGCTCAGACAT 59.581 40.000 21.83 4.22 39.68 3.06
4285 4819 4.765339 TGTAGCAAACTAGTAGCTCAGACA 59.235 41.667 21.83 18.10 39.68 3.41
4286 4820 5.312120 TGTAGCAAACTAGTAGCTCAGAC 57.688 43.478 21.83 16.25 39.68 3.51
4287 4821 6.531503 AATGTAGCAAACTAGTAGCTCAGA 57.468 37.500 21.83 10.59 39.68 3.27
4288 4822 8.879342 ATTAATGTAGCAAACTAGTAGCTCAG 57.121 34.615 21.83 0.06 39.68 3.35
4289 4823 9.098355 CAATTAATGTAGCAAACTAGTAGCTCA 57.902 33.333 21.83 18.86 39.68 4.26
4290 4824 9.314321 TCAATTAATGTAGCAAACTAGTAGCTC 57.686 33.333 21.83 15.16 39.68 4.09
4291 4825 9.099454 GTCAATTAATGTAGCAAACTAGTAGCT 57.901 33.333 21.86 21.86 42.14 3.32
4292 4826 9.099454 AGTCAATTAATGTAGCAAACTAGTAGC 57.901 33.333 11.24 11.24 0.00 3.58
5070 9313 2.117156 ATGACCCATCGCAGCAAGC 61.117 57.895 0.00 0.00 40.87 4.01
5210 9735 2.286365 AACGGGCCAAATTCTTCTCA 57.714 45.000 4.39 0.00 0.00 3.27
5212 9737 2.593026 TCAAACGGGCCAAATTCTTCT 58.407 42.857 4.39 0.00 0.00 2.85
5236 9761 0.890542 GGCCACACAGTGAATGCAGA 60.891 55.000 7.81 0.00 35.23 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.