Multiple sequence alignment - TraesCS4B01G258400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G258400 chr4B 100.000 3209 0 0 1 3209 524901845 524898637 0.000000e+00 5927.0
1 TraesCS4B01G258400 chr4B 88.573 1479 137 10 733 2209 522681968 522683416 0.000000e+00 1766.0
2 TraesCS4B01G258400 chr4B 85.382 1204 141 18 910 2101 522677162 522678342 0.000000e+00 1216.0
3 TraesCS4B01G258400 chr4B 78.346 1741 266 79 960 2655 522669423 522671097 0.000000e+00 1024.0
4 TraesCS4B01G258400 chr4B 80.097 1231 198 31 995 2208 527644777 527643577 0.000000e+00 872.0
5 TraesCS4B01G258400 chr4B 86.293 321 36 6 2252 2570 522683418 522683732 3.070000e-90 342.0
6 TraesCS4B01G258400 chr4B 83.939 330 27 10 2886 3209 522684681 522684990 3.130000e-75 292.0
7 TraesCS4B01G258400 chr4B 92.806 139 8 2 19 156 522681289 522681426 1.950000e-47 200.0
8 TraesCS4B01G258400 chr4B 87.302 63 7 1 2752 2813 522683901 522683963 1.600000e-08 71.3
9 TraesCS4B01G258400 chr4A 90.161 2490 128 32 272 2680 37999272 38001725 0.000000e+00 3133.0
10 TraesCS4B01G258400 chr4A 85.284 1991 154 46 645 2572 38663662 38661748 0.000000e+00 1925.0
11 TraesCS4B01G258400 chr4A 86.566 1593 133 32 645 2228 37833359 37834879 0.000000e+00 1681.0
12 TraesCS4B01G258400 chr4A 83.878 1346 148 23 916 2228 38675698 38674389 0.000000e+00 1219.0
13 TraesCS4B01G258400 chr4A 95.694 209 8 1 1 208 37999066 37999274 5.130000e-88 335.0
14 TraesCS4B01G258400 chr4A 83.380 355 41 12 2237 2581 37834934 37835280 2.400000e-81 313.0
15 TraesCS4B01G258400 chr4A 82.258 310 41 10 2332 2638 38661408 38661110 4.110000e-64 255.0
16 TraesCS4B01G258400 chr4A 79.255 376 40 12 2671 3034 38673868 38673519 8.960000e-56 228.0
17 TraesCS4B01G258400 chr4A 90.066 151 9 3 3059 3209 38659645 38659501 1.170000e-44 191.0
18 TraesCS4B01G258400 chr4A 91.176 136 11 1 19 153 37832727 37832862 1.970000e-42 183.0
19 TraesCS4B01G258400 chr4A 87.500 144 17 1 87 230 38668527 38668385 7.120000e-37 165.0
20 TraesCS4B01G258400 chr4A 86.076 158 8 2 2669 2812 38001744 38001901 1.190000e-34 158.0
21 TraesCS4B01G258400 chr4A 97.059 68 2 0 355 422 37833048 37833115 7.270000e-22 115.0
22 TraesCS4B01G258400 chr4A 97.059 68 2 0 355 422 38663973 38663906 7.270000e-22 115.0
23 TraesCS4B01G258400 chr4A 98.214 56 1 0 2600 2655 38661749 38661694 7.330000e-17 99.0
24 TraesCS4B01G258400 chr4A 89.286 56 6 0 2752 2807 38661587 38661532 1.600000e-08 71.3
25 TraesCS4B01G258400 chr4D 93.287 2145 104 19 57 2190 428398795 428396680 0.000000e+00 3127.0
26 TraesCS4B01G258400 chr4D 86.114 1750 156 31 732 2420 427014253 427015976 0.000000e+00 1805.0
27 TraesCS4B01G258400 chr4D 88.034 1521 142 16 732 2239 427322398 427323891 0.000000e+00 1764.0
28 TraesCS4B01G258400 chr4D 86.738 1493 136 21 738 2209 428558549 428557098 0.000000e+00 1604.0
29 TraesCS4B01G258400 chr4D 82.611 1570 177 48 959 2501 427267891 427269391 0.000000e+00 1299.0
30 TraesCS4B01G258400 chr4D 83.919 541 58 14 962 1491 426900454 426900976 1.030000e-134 490.0
31 TraesCS4B01G258400 chr4D 93.231 325 20 2 2332 2656 427323928 427324250 8.050000e-131 477.0
32 TraesCS4B01G258400 chr4D 89.538 325 24 4 2885 3209 427022197 427022511 1.390000e-108 403.0
33 TraesCS4B01G258400 chr4D 92.857 252 17 1 2334 2585 428396533 428396283 6.540000e-97 364.0
34 TraesCS4B01G258400 chr4D 80.050 401 58 12 2255 2653 428547213 428546833 8.770000e-71 278.0
35 TraesCS4B01G258400 chr4D 90.909 176 13 1 2836 3008 428393908 428393733 1.920000e-57 233.0
36 TraesCS4B01G258400 chr4D 93.038 158 8 2 1 156 428559122 428558966 8.960000e-56 228.0
37 TraesCS4B01G258400 chr4D 79.930 284 38 9 2255 2535 428557093 428556826 1.170000e-44 191.0
38 TraesCS4B01G258400 chr4D 89.831 118 12 0 209 326 426903360 426903477 5.540000e-33 152.0
39 TraesCS4B01G258400 chr4D 89.831 118 12 0 209 326 427270441 427270558 5.540000e-33 152.0
40 TraesCS4B01G258400 chr4D 91.837 98 7 1 2716 2812 427324265 427324362 5.580000e-28 135.0
41 TraesCS4B01G258400 chr4D 98.529 68 1 0 1 68 428398883 428398816 1.560000e-23 121.0
42 TraesCS4B01G258400 chr4D 92.593 81 6 0 348 428 427013226 427013306 2.020000e-22 117.0
43 TraesCS4B01G258400 chr4D 81.429 140 19 5 422 556 427319943 427320080 1.220000e-19 108.0
44 TraesCS4B01G258400 chr4D 86.735 98 9 2 422 517 427013336 427013431 4.380000e-19 106.0
45 TraesCS4B01G258400 chr4D 98.305 59 1 0 2597 2655 427021206 427021264 1.570000e-18 104.0
46 TraesCS4B01G258400 chr4D 96.721 61 2 0 2228 2288 428396679 428396619 5.660000e-18 102.0
47 TraesCS4B01G258400 chr4D 86.022 93 12 1 2721 2812 427021430 427021522 7.330000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G258400 chr4B 524898637 524901845 3208 True 5927.000000 5927 100.000000 1 3209 1 chr4B.!!$R1 3208
1 TraesCS4B01G258400 chr4B 522669423 522671097 1674 False 1024.000000 1024 78.346000 960 2655 1 chr4B.!!$F1 1695
2 TraesCS4B01G258400 chr4B 527643577 527644777 1200 True 872.000000 872 80.097000 995 2208 1 chr4B.!!$R2 1213
3 TraesCS4B01G258400 chr4B 522677162 522684990 7828 False 647.883333 1766 87.382500 19 3209 6 chr4B.!!$F2 3190
4 TraesCS4B01G258400 chr4A 37999066 38001901 2835 False 1208.666667 3133 90.643667 1 2812 3 chr4A.!!$F2 2811
5 TraesCS4B01G258400 chr4A 38673519 38675698 2179 True 723.500000 1219 81.566500 916 3034 2 chr4A.!!$R3 2118
6 TraesCS4B01G258400 chr4A 37832727 37835280 2553 False 573.000000 1681 89.545250 19 2581 4 chr4A.!!$F1 2562
7 TraesCS4B01G258400 chr4A 38659501 38663973 4472 True 442.716667 1925 90.361167 355 3209 6 chr4A.!!$R2 2854
8 TraesCS4B01G258400 chr4D 428393733 428398883 5150 True 789.400000 3127 94.460600 1 3008 5 chr4D.!!$R2 3007
9 TraesCS4B01G258400 chr4D 427267891 427270558 2667 False 725.500000 1299 86.221000 209 2501 2 chr4D.!!$F4 2292
10 TraesCS4B01G258400 chr4D 427013226 427015976 2750 False 676.000000 1805 88.480667 348 2420 3 chr4D.!!$F2 2072
11 TraesCS4B01G258400 chr4D 428556826 428559122 2296 True 674.333333 1604 86.568667 1 2535 3 chr4D.!!$R3 2534
12 TraesCS4B01G258400 chr4D 427319943 427324362 4419 False 621.000000 1764 88.632750 422 2812 4 chr4D.!!$F5 2390
13 TraesCS4B01G258400 chr4D 426900454 426903477 3023 False 321.000000 490 86.875000 209 1491 2 chr4D.!!$F1 1282
14 TraesCS4B01G258400 chr4D 427021206 427022511 1305 False 202.000000 403 91.288333 2597 3209 3 chr4D.!!$F3 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 7286 0.028770 CAAACGAAAACGCAGGCAGA 59.971 50.0 0.0 0.0 0.00 4.26 F
2142 9015 0.107214 GGATCAAGTTCATCCCGCCA 60.107 55.0 0.0 0.0 34.68 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2199 9072 1.335689 ACAGAGTTCCGTTACACTCGC 60.336 52.381 0.0 0.0 43.69 5.03 R
3085 15093 0.530288 CAACCGGCAAAACCCCTATG 59.470 55.000 0.0 0.0 33.26 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 4226 5.399038 GGTTCCCTCAAAATGATCCTATGGA 60.399 44.000 0.00 0.00 35.55 3.41
104 4247 2.632996 ACAAGGATCGTCTTCAGGAACA 59.367 45.455 0.00 0.00 0.00 3.18
199 4352 2.750815 GCTTGTCGAAGCGGTACAT 58.249 52.632 0.00 0.00 45.12 2.29
205 4358 1.654105 GTCGAAGCGGTACATTGACTG 59.346 52.381 0.00 0.00 0.00 3.51
206 4359 0.999406 CGAAGCGGTACATTGACTGG 59.001 55.000 0.00 0.00 0.00 4.00
207 4360 1.671850 CGAAGCGGTACATTGACTGGT 60.672 52.381 0.00 0.00 38.05 4.00
208 4361 1.732259 GAAGCGGTACATTGACTGGTG 59.268 52.381 0.00 0.00 36.56 4.17
209 4362 0.973632 AGCGGTACATTGACTGGTGA 59.026 50.000 0.00 0.00 35.14 4.02
210 4363 1.346395 AGCGGTACATTGACTGGTGAA 59.654 47.619 0.00 0.00 35.14 3.18
211 4364 1.463444 GCGGTACATTGACTGGTGAAC 59.537 52.381 0.00 0.00 0.00 3.18
212 4365 1.724623 CGGTACATTGACTGGTGAACG 59.275 52.381 0.00 0.00 0.00 3.95
213 4366 2.608506 CGGTACATTGACTGGTGAACGA 60.609 50.000 0.00 0.00 0.00 3.85
214 4367 3.395639 GGTACATTGACTGGTGAACGAA 58.604 45.455 0.00 0.00 0.00 3.85
215 4368 3.185797 GGTACATTGACTGGTGAACGAAC 59.814 47.826 0.00 0.00 0.00 3.95
216 4369 1.864711 ACATTGACTGGTGAACGAACG 59.135 47.619 0.00 0.00 0.00 3.95
218 4371 1.155424 TTGACTGGTGAACGAACGGC 61.155 55.000 0.00 0.00 0.00 5.68
219 4372 1.300697 GACTGGTGAACGAACGGCT 60.301 57.895 0.00 0.00 0.00 5.52
220 4373 0.038892 GACTGGTGAACGAACGGCTA 60.039 55.000 0.00 0.00 0.00 3.93
221 4374 0.390124 ACTGGTGAACGAACGGCTAA 59.610 50.000 0.00 0.00 0.00 3.09
222 4375 1.202557 ACTGGTGAACGAACGGCTAAA 60.203 47.619 0.00 0.00 0.00 1.85
223 4376 1.868498 CTGGTGAACGAACGGCTAAAA 59.132 47.619 0.00 0.00 0.00 1.52
224 4377 2.482721 CTGGTGAACGAACGGCTAAAAT 59.517 45.455 0.00 0.00 0.00 1.82
226 4379 3.432933 TGGTGAACGAACGGCTAAAATAC 59.567 43.478 0.00 0.00 0.00 1.89
228 4381 2.092524 TGAACGAACGGCTAAAATACGC 59.907 45.455 0.00 0.00 0.00 4.42
233 4386 2.373540 ACGGCTAAAATACGCTCACA 57.626 45.000 0.00 0.00 0.00 3.58
234 4387 2.690786 ACGGCTAAAATACGCTCACAA 58.309 42.857 0.00 0.00 0.00 3.33
235 4388 3.068560 ACGGCTAAAATACGCTCACAAA 58.931 40.909 0.00 0.00 0.00 2.83
236 4389 3.499157 ACGGCTAAAATACGCTCACAAAA 59.501 39.130 0.00 0.00 0.00 2.44
237 4390 4.088648 CGGCTAAAATACGCTCACAAAAG 58.911 43.478 0.00 0.00 0.00 2.27
238 4391 4.412207 GGCTAAAATACGCTCACAAAAGG 58.588 43.478 0.00 0.00 0.00 3.11
240 4393 5.324697 GCTAAAATACGCTCACAAAAGGAG 58.675 41.667 0.00 0.00 35.47 3.69
241 4394 5.121768 GCTAAAATACGCTCACAAAAGGAGA 59.878 40.000 0.00 0.00 34.24 3.71
243 4396 5.803020 AAATACGCTCACAAAAGGAGATC 57.197 39.130 0.00 0.00 34.24 2.75
244 4397 2.839486 ACGCTCACAAAAGGAGATCA 57.161 45.000 0.00 0.00 34.24 2.92
245 4398 3.126001 ACGCTCACAAAAGGAGATCAA 57.874 42.857 0.00 0.00 34.24 2.57
246 4399 2.808543 ACGCTCACAAAAGGAGATCAAC 59.191 45.455 0.00 0.00 34.24 3.18
248 4401 3.067106 GCTCACAAAAGGAGATCAACGA 58.933 45.455 0.00 0.00 34.24 3.85
249 4402 3.120511 GCTCACAAAAGGAGATCAACGAC 60.121 47.826 0.00 0.00 34.24 4.34
250 4403 4.058124 CTCACAAAAGGAGATCAACGACA 58.942 43.478 0.00 0.00 34.24 4.35
251 4404 4.058124 TCACAAAAGGAGATCAACGACAG 58.942 43.478 0.00 0.00 0.00 3.51
252 4405 3.809832 CACAAAAGGAGATCAACGACAGT 59.190 43.478 0.00 0.00 0.00 3.55
253 4406 4.058817 ACAAAAGGAGATCAACGACAGTC 58.941 43.478 0.00 0.00 0.00 3.51
254 4407 2.638556 AAGGAGATCAACGACAGTCG 57.361 50.000 21.62 21.62 46.93 4.18
256 4409 1.740585 AGGAGATCAACGACAGTCGAG 59.259 52.381 29.53 19.70 43.74 4.04
258 4411 2.223157 GGAGATCAACGACAGTCGAGAG 60.223 54.545 29.53 16.99 43.74 3.20
259 4412 1.740585 AGATCAACGACAGTCGAGAGG 59.259 52.381 29.53 14.35 43.74 3.69
261 4414 1.601166 TCAACGACAGTCGAGAGGAA 58.399 50.000 29.53 5.65 43.74 3.36
264 4417 1.158434 ACGACAGTCGAGAGGAAGAC 58.842 55.000 29.53 0.00 43.74 3.01
268 4421 3.662290 AGTCGAGAGGAAGACTGCT 57.338 52.632 0.00 0.00 45.03 4.24
269 4422 1.917872 AGTCGAGAGGAAGACTGCTT 58.082 50.000 0.00 0.00 45.03 3.91
312 4531 2.037136 GTGCTCCGCTGATGCTTGT 61.037 57.895 0.00 0.00 36.97 3.16
320 4539 2.352030 CCGCTGATGCTTGTTTCACAAT 60.352 45.455 0.00 0.00 37.48 2.71
326 4545 5.221880 TGATGCTTGTTTCACAATTGTAGC 58.778 37.500 17.87 17.87 37.48 3.58
327 4546 3.976169 TGCTTGTTTCACAATTGTAGCC 58.024 40.909 20.55 7.69 37.48 3.93
328 4547 2.979813 GCTTGTTTCACAATTGTAGCCG 59.020 45.455 11.53 0.00 37.48 5.52
329 4548 3.550030 GCTTGTTTCACAATTGTAGCCGT 60.550 43.478 11.53 0.00 37.48 5.68
330 4549 4.606961 CTTGTTTCACAATTGTAGCCGTT 58.393 39.130 11.53 0.00 37.48 4.44
331 4550 5.752892 TTGTTTCACAATTGTAGCCGTTA 57.247 34.783 11.53 0.00 32.34 3.18
332 4551 5.351233 TGTTTCACAATTGTAGCCGTTAG 57.649 39.130 11.53 0.00 0.00 2.34
333 4552 4.817464 TGTTTCACAATTGTAGCCGTTAGT 59.183 37.500 11.53 0.00 0.00 2.24
334 4553 5.049954 TGTTTCACAATTGTAGCCGTTAGTC 60.050 40.000 11.53 0.00 0.00 2.59
335 4554 3.592059 TCACAATTGTAGCCGTTAGTCC 58.408 45.455 11.53 0.00 0.00 3.85
337 4556 3.370978 CACAATTGTAGCCGTTAGTCCTG 59.629 47.826 11.53 0.00 0.00 3.86
338 4557 3.007614 ACAATTGTAGCCGTTAGTCCTGT 59.992 43.478 9.97 0.00 0.00 4.00
339 4558 3.521947 ATTGTAGCCGTTAGTCCTGTC 57.478 47.619 0.00 0.00 0.00 3.51
340 4559 1.913778 TGTAGCCGTTAGTCCTGTCA 58.086 50.000 0.00 0.00 0.00 3.58
341 4560 2.453521 TGTAGCCGTTAGTCCTGTCAT 58.546 47.619 0.00 0.00 0.00 3.06
342 4561 2.426024 TGTAGCCGTTAGTCCTGTCATC 59.574 50.000 0.00 0.00 0.00 2.92
343 4562 0.824759 AGCCGTTAGTCCTGTCATCC 59.175 55.000 0.00 0.00 0.00 3.51
344 4563 0.527817 GCCGTTAGTCCTGTCATCCG 60.528 60.000 0.00 0.00 0.00 4.18
345 4564 0.102481 CCGTTAGTCCTGTCATCCGG 59.898 60.000 0.00 0.00 0.00 5.14
346 4565 0.815734 CGTTAGTCCTGTCATCCGGT 59.184 55.000 0.00 0.00 0.00 5.28
353 4572 0.826715 CCTGTCATCCGGTCTGTCAT 59.173 55.000 0.00 0.00 0.00 3.06
426 4681 1.281899 GAGGAACTTGATCGCGAAGG 58.718 55.000 15.24 0.00 41.55 3.46
429 4684 0.721718 GAACTTGATCGCGAAGGTGG 59.278 55.000 15.24 5.38 0.00 4.61
482 4740 1.739562 GCAGTCCTCGGTGCTTCTG 60.740 63.158 0.00 0.00 36.71 3.02
540 4800 2.029964 GCCGGTCGTTTCTGGTCA 59.970 61.111 1.90 0.00 36.33 4.02
571 4850 2.571757 GTCGAGGACGGCATCACA 59.428 61.111 2.83 0.00 44.03 3.58
639 4935 0.878416 GATCGAGATGGAGGAGACGG 59.122 60.000 0.00 0.00 0.00 4.79
778 7257 3.064931 GGAAACGAACGAACCTGAATCT 58.935 45.455 0.14 0.00 0.00 2.40
779 7258 3.497262 GGAAACGAACGAACCTGAATCTT 59.503 43.478 0.14 0.00 0.00 2.40
807 7286 0.028770 CAAACGAAAACGCAGGCAGA 59.971 50.000 0.00 0.00 0.00 4.26
875 7360 4.803426 GGCGACTCGGTGAGGCAG 62.803 72.222 0.00 0.00 37.60 4.85
1200 7736 0.536460 ACCGCGTCACCAAAAAGGAT 60.536 50.000 4.92 0.00 41.22 3.24
1296 7853 2.093537 GATTCCTCGAGGCCTGCGAT 62.094 60.000 27.39 12.39 37.13 4.58
1307 7864 1.750399 CCTGCGATGGAAACCCCTG 60.750 63.158 0.00 0.00 35.38 4.45
1309 7866 2.361104 GCGATGGAAACCCCTGCA 60.361 61.111 0.00 0.00 35.38 4.41
1512 8354 2.742372 GAGCACGACCGCCACATT 60.742 61.111 0.00 0.00 0.00 2.71
1578 8427 1.494960 GGGAGCTCCTCAAGATCTGT 58.505 55.000 31.36 0.00 40.39 3.41
1599 8448 4.100084 CTCGGGCTGGCCATGTCA 62.100 66.667 21.03 0.00 37.98 3.58
1754 8603 2.027073 GCACGACGCTGTTCATGGA 61.027 57.895 0.00 0.00 37.77 3.41
2058 8922 2.825836 CCATGGTTCGCTGCTCCC 60.826 66.667 2.57 0.00 0.00 4.30
2142 9015 0.107214 GGATCAAGTTCATCCCGCCA 60.107 55.000 0.00 0.00 34.68 5.69
2178 9051 9.877178 GAGAAGAATCTACTCAAAATTCCACTA 57.123 33.333 0.00 0.00 35.54 2.74
2182 9055 5.755409 TCTACTCAAAATTCCACTAGCCA 57.245 39.130 0.00 0.00 0.00 4.75
2218 9091 1.068472 AGCGAGTGTAACGGAACTCTG 60.068 52.381 0.00 0.00 45.86 3.35
2223 9118 5.674569 GCGAGTGTAACGGAACTCTGTATTA 60.675 44.000 0.00 0.00 45.86 0.98
2230 9125 5.776173 ACGGAACTCTGTATTAGATGAGG 57.224 43.478 0.00 0.00 34.21 3.86
2263 9188 6.690194 AAATGCTAGCATAAACTCTCTTGG 57.310 37.500 29.77 0.00 35.31 3.61
2313 9269 5.658634 AGTGCTGATCCATCAAGTAGAAGTA 59.341 40.000 0.00 0.00 36.18 2.24
2317 9273 7.070447 TGCTGATCCATCAAGTAGAAGTAGATT 59.930 37.037 0.00 0.00 36.18 2.40
2326 9282 5.346181 AGTAGAAGTAGATTCTTGGCACC 57.654 43.478 0.00 0.00 46.49 5.01
2328 9284 4.917906 AGAAGTAGATTCTTGGCACCTT 57.082 40.909 0.00 0.00 46.49 3.50
2330 9286 4.287067 AGAAGTAGATTCTTGGCACCTTGA 59.713 41.667 0.00 0.00 46.49 3.02
2339 9318 1.533625 TGGCACCTTGATAGTGTTGC 58.466 50.000 0.00 0.00 37.56 4.17
2380 9359 2.686915 TGTGTCATTGTGCACATGTTCA 59.313 40.909 22.39 18.25 40.24 3.18
2381 9360 3.243134 TGTGTCATTGTGCACATGTTCAG 60.243 43.478 22.39 7.31 40.24 3.02
2382 9361 3.003585 GTGTCATTGTGCACATGTTCAGA 59.996 43.478 22.39 3.59 35.81 3.27
2383 9362 3.251487 TGTCATTGTGCACATGTTCAGAG 59.749 43.478 22.39 2.49 0.00 3.35
2384 9363 3.499537 GTCATTGTGCACATGTTCAGAGA 59.500 43.478 22.39 1.87 0.00 3.10
2385 9364 4.023792 GTCATTGTGCACATGTTCAGAGAA 60.024 41.667 22.39 1.00 0.00 2.87
2386 9365 4.763279 TCATTGTGCACATGTTCAGAGAAT 59.237 37.500 22.39 3.76 0.00 2.40
2387 9366 4.754372 TTGTGCACATGTTCAGAGAATC 57.246 40.909 22.39 0.00 0.00 2.52
2388 9367 3.742385 TGTGCACATGTTCAGAGAATCA 58.258 40.909 17.42 0.00 37.82 2.57
2389 9368 3.749609 TGTGCACATGTTCAGAGAATCAG 59.250 43.478 17.42 0.00 37.82 2.90
2390 9369 3.999001 GTGCACATGTTCAGAGAATCAGA 59.001 43.478 13.17 0.00 37.82 3.27
2391 9370 4.093115 GTGCACATGTTCAGAGAATCAGAG 59.907 45.833 13.17 0.00 37.82 3.35
2392 9371 4.020839 TGCACATGTTCAGAGAATCAGAGA 60.021 41.667 0.00 0.00 37.82 3.10
2393 9372 5.117584 GCACATGTTCAGAGAATCAGAGAT 58.882 41.667 0.00 0.00 37.82 2.75
2394 9373 5.006844 GCACATGTTCAGAGAATCAGAGATG 59.993 44.000 0.00 0.00 37.82 2.90
2395 9374 6.107343 CACATGTTCAGAGAATCAGAGATGT 58.893 40.000 0.00 0.00 36.58 3.06
2396 9375 6.036191 CACATGTTCAGAGAATCAGAGATGTG 59.964 42.308 0.00 0.00 41.82 3.21
2397 9376 5.735285 TGTTCAGAGAATCAGAGATGTGT 57.265 39.130 0.00 0.00 37.82 3.72
2398 9377 6.840780 TGTTCAGAGAATCAGAGATGTGTA 57.159 37.500 0.00 0.00 37.82 2.90
2399 9378 7.232118 TGTTCAGAGAATCAGAGATGTGTAA 57.768 36.000 0.00 0.00 37.82 2.41
2400 9379 7.093354 TGTTCAGAGAATCAGAGATGTGTAAC 58.907 38.462 0.00 0.00 37.82 2.50
2401 9380 7.039434 TGTTCAGAGAATCAGAGATGTGTAACT 60.039 37.037 0.00 0.00 37.82 2.24
2402 9381 6.861144 TCAGAGAATCAGAGATGTGTAACTG 58.139 40.000 0.00 0.00 37.82 3.16
2403 9382 6.435591 TCAGAGAATCAGAGATGTGTAACTGT 59.564 38.462 0.00 0.00 37.82 3.55
2404 9383 7.611855 TCAGAGAATCAGAGATGTGTAACTGTA 59.388 37.037 0.00 0.00 37.82 2.74
2405 9384 8.246871 CAGAGAATCAGAGATGTGTAACTGTAA 58.753 37.037 0.00 0.00 37.82 2.41
2406 9385 8.465999 AGAGAATCAGAGATGTGTAACTGTAAG 58.534 37.037 0.00 0.00 37.82 2.34
2407 9386 7.551585 AGAATCAGAGATGTGTAACTGTAAGG 58.448 38.462 0.00 0.00 39.30 2.69
2408 9387 6.859112 ATCAGAGATGTGTAACTGTAAGGT 57.141 37.500 0.00 0.00 39.30 3.50
2409 9388 6.665992 TCAGAGATGTGTAACTGTAAGGTT 57.334 37.500 0.00 0.00 39.30 3.50
2410 9389 6.455647 TCAGAGATGTGTAACTGTAAGGTTG 58.544 40.000 0.00 0.00 39.30 3.77
2411 9390 6.041637 TCAGAGATGTGTAACTGTAAGGTTGT 59.958 38.462 0.00 0.00 39.30 3.32
2412 9391 6.146184 CAGAGATGTGTAACTGTAAGGTTGTG 59.854 42.308 0.00 0.00 39.30 3.33
2413 9392 5.925509 AGATGTGTAACTGTAAGGTTGTGT 58.074 37.500 0.00 0.00 39.30 3.72
2414 9393 6.354130 AGATGTGTAACTGTAAGGTTGTGTT 58.646 36.000 0.00 0.00 39.30 3.32
2415 9394 6.482308 AGATGTGTAACTGTAAGGTTGTGTTC 59.518 38.462 0.00 0.00 39.30 3.18
2416 9395 5.489249 TGTGTAACTGTAAGGTTGTGTTCA 58.511 37.500 0.00 0.00 39.30 3.18
2417 9396 5.583061 TGTGTAACTGTAAGGTTGTGTTCAG 59.417 40.000 0.00 0.00 39.30 3.02
2418 9397 5.813672 GTGTAACTGTAAGGTTGTGTTCAGA 59.186 40.000 0.00 0.00 39.30 3.27
2419 9398 6.018994 GTGTAACTGTAAGGTTGTGTTCAGAG 60.019 42.308 0.00 0.00 39.30 3.35
2420 9399 5.353394 AACTGTAAGGTTGTGTTCAGAGA 57.647 39.130 0.00 0.00 39.30 3.10
2421 9400 5.552870 ACTGTAAGGTTGTGTTCAGAGAT 57.447 39.130 0.00 0.00 39.30 2.75
2422 9401 5.930135 ACTGTAAGGTTGTGTTCAGAGATT 58.070 37.500 0.00 0.00 39.30 2.40
2423 9402 5.992217 ACTGTAAGGTTGTGTTCAGAGATTC 59.008 40.000 0.00 0.00 39.30 2.52
2424 9403 5.924356 TGTAAGGTTGTGTTCAGAGATTCA 58.076 37.500 0.00 0.00 0.00 2.57
2425 9404 6.533730 TGTAAGGTTGTGTTCAGAGATTCAT 58.466 36.000 0.00 0.00 0.00 2.57
2426 9405 6.998074 TGTAAGGTTGTGTTCAGAGATTCATT 59.002 34.615 0.00 0.00 0.00 2.57
2427 9406 8.154203 TGTAAGGTTGTGTTCAGAGATTCATTA 58.846 33.333 0.00 0.00 0.00 1.90
2428 9407 7.440523 AAGGTTGTGTTCAGAGATTCATTAC 57.559 36.000 0.00 0.00 0.00 1.89
2429 9408 6.533730 AGGTTGTGTTCAGAGATTCATTACA 58.466 36.000 0.00 0.00 0.00 2.41
2430 9409 6.652481 AGGTTGTGTTCAGAGATTCATTACAG 59.348 38.462 0.00 0.00 0.00 2.74
2431 9410 6.428159 GGTTGTGTTCAGAGATTCATTACAGT 59.572 38.462 0.00 0.00 0.00 3.55
2432 9411 7.293745 GTTGTGTTCAGAGATTCATTACAGTG 58.706 38.462 0.00 0.00 0.00 3.66
2433 9412 5.409520 TGTGTTCAGAGATTCATTACAGTGC 59.590 40.000 0.00 0.00 0.00 4.40
2434 9413 5.641209 GTGTTCAGAGATTCATTACAGTGCT 59.359 40.000 0.00 0.00 0.00 4.40
2435 9414 5.640783 TGTTCAGAGATTCATTACAGTGCTG 59.359 40.000 0.00 0.00 0.00 4.41
2436 9415 5.665916 TCAGAGATTCATTACAGTGCTGA 57.334 39.130 6.17 0.00 0.00 4.26
2437 9416 5.414360 TCAGAGATTCATTACAGTGCTGAC 58.586 41.667 6.17 0.00 0.00 3.51
2438 9417 5.047092 TCAGAGATTCATTACAGTGCTGACA 60.047 40.000 6.17 0.00 0.00 3.58
2439 9418 5.816258 CAGAGATTCATTACAGTGCTGACAT 59.184 40.000 6.17 0.00 0.00 3.06
2440 9419 6.982724 CAGAGATTCATTACAGTGCTGACATA 59.017 38.462 6.17 0.00 0.00 2.29
2441 9420 7.656542 CAGAGATTCATTACAGTGCTGACATAT 59.343 37.037 6.17 0.00 0.00 1.78
2442 9421 7.656542 AGAGATTCATTACAGTGCTGACATATG 59.343 37.037 6.17 0.00 0.00 1.78
2443 9422 7.278135 AGATTCATTACAGTGCTGACATATGT 58.722 34.615 8.43 8.43 34.23 2.29
2444 9423 7.772292 AGATTCATTACAGTGCTGACATATGTT 59.228 33.333 10.30 0.00 32.64 2.71
2445 9424 6.667007 TCATTACAGTGCTGACATATGTTG 57.333 37.500 10.30 5.63 32.64 3.33
2446 9425 6.172630 TCATTACAGTGCTGACATATGTTGT 58.827 36.000 10.30 11.35 42.79 3.32
2447 9426 6.654582 TCATTACAGTGCTGACATATGTTGTT 59.345 34.615 10.30 0.00 39.18 2.83
2448 9427 6.875948 TTACAGTGCTGACATATGTTGTTT 57.124 33.333 10.30 0.00 39.18 2.83
2449 9428 7.971183 TTACAGTGCTGACATATGTTGTTTA 57.029 32.000 10.30 0.00 39.18 2.01
2450 9429 6.241207 ACAGTGCTGACATATGTTGTTTAC 57.759 37.500 10.30 6.47 39.18 2.01
2451 9430 5.762711 ACAGTGCTGACATATGTTGTTTACA 59.237 36.000 10.30 1.16 39.18 2.41
2453 9432 6.744082 CAGTGCTGACATATGTTGTTTACATG 59.256 38.462 10.30 0.00 46.81 3.21
2454 9433 6.029607 GTGCTGACATATGTTGTTTACATGG 58.970 40.000 10.30 0.00 46.81 3.66
2455 9434 5.709631 TGCTGACATATGTTGTTTACATGGT 59.290 36.000 10.30 0.00 46.81 3.55
2456 9435 6.128035 TGCTGACATATGTTGTTTACATGGTC 60.128 38.462 10.30 13.17 46.81 4.02
2461 9440 8.984891 ACATATGTTGTTTACATGGTCAATTG 57.015 30.769 1.41 0.00 46.81 2.32
2462 9441 8.584157 ACATATGTTGTTTACATGGTCAATTGT 58.416 29.630 1.41 0.00 46.81 2.71
2463 9442 9.421806 CATATGTTGTTTACATGGTCAATTGTT 57.578 29.630 5.13 0.00 46.81 2.83
2465 9444 8.810652 ATGTTGTTTACATGGTCAATTGTTAC 57.189 30.769 5.13 0.00 45.71 2.50
2466 9445 8.001881 TGTTGTTTACATGGTCAATTGTTACT 57.998 30.769 5.13 0.00 0.00 2.24
2467 9446 7.918033 TGTTGTTTACATGGTCAATTGTTACTG 59.082 33.333 5.13 2.76 0.00 2.74
2468 9447 7.809546 TGTTTACATGGTCAATTGTTACTGA 57.190 32.000 5.13 0.00 0.00 3.41
2469 9448 7.870826 TGTTTACATGGTCAATTGTTACTGAG 58.129 34.615 5.13 0.00 0.00 3.35
2470 9449 7.500892 TGTTTACATGGTCAATTGTTACTGAGT 59.499 33.333 5.13 0.00 0.00 3.41
2471 9450 8.349983 GTTTACATGGTCAATTGTTACTGAGTT 58.650 33.333 5.13 0.00 0.00 3.01
2472 9451 9.562408 TTTACATGGTCAATTGTTACTGAGTTA 57.438 29.630 5.13 0.00 0.00 2.24
2473 9452 9.733556 TTACATGGTCAATTGTTACTGAGTTAT 57.266 29.630 5.13 0.00 0.00 1.89
2475 9454 9.162764 ACATGGTCAATTGTTACTGAGTTATAC 57.837 33.333 5.13 0.00 0.00 1.47
2476 9455 9.383519 CATGGTCAATTGTTACTGAGTTATACT 57.616 33.333 5.13 0.00 0.00 2.12
2477 9456 8.771920 TGGTCAATTGTTACTGAGTTATACTG 57.228 34.615 5.13 0.00 0.00 2.74
2478 9457 7.333423 TGGTCAATTGTTACTGAGTTATACTGC 59.667 37.037 5.13 0.00 0.00 4.40
2479 9458 7.333423 GGTCAATTGTTACTGAGTTATACTGCA 59.667 37.037 5.13 0.00 0.00 4.41
2480 9459 8.169268 GTCAATTGTTACTGAGTTATACTGCAC 58.831 37.037 5.13 0.00 0.00 4.57
2481 9460 7.875554 TCAATTGTTACTGAGTTATACTGCACA 59.124 33.333 5.13 0.00 0.00 4.57
2482 9461 8.503196 CAATTGTTACTGAGTTATACTGCACAA 58.497 33.333 0.00 0.00 0.00 3.33
2483 9462 8.792830 ATTGTTACTGAGTTATACTGCACAAT 57.207 30.769 0.00 0.00 0.00 2.71
2484 9463 8.615878 TTGTTACTGAGTTATACTGCACAATT 57.384 30.769 0.00 0.00 0.00 2.32
2485 9464 8.615878 TGTTACTGAGTTATACTGCACAATTT 57.384 30.769 0.00 0.00 0.00 1.82
2486 9465 8.503196 TGTTACTGAGTTATACTGCACAATTTG 58.497 33.333 0.00 0.00 0.00 2.32
2487 9466 8.504005 GTTACTGAGTTATACTGCACAATTTGT 58.496 33.333 0.00 0.00 0.00 2.83
2501 9480 6.406093 CACAATTTGTGCTGTTTTTCAGAA 57.594 33.333 16.05 0.00 41.89 3.02
2502 9481 6.829703 CACAATTTGTGCTGTTTTTCAGAAA 58.170 32.000 16.05 0.00 41.89 2.52
2503 9482 7.465989 CACAATTTGTGCTGTTTTTCAGAAAT 58.534 30.769 16.05 0.00 41.89 2.17
2504 9483 7.637132 CACAATTTGTGCTGTTTTTCAGAAATC 59.363 33.333 16.05 0.00 41.89 2.17
2505 9484 7.333921 ACAATTTGTGCTGTTTTTCAGAAATCA 59.666 29.630 0.15 0.00 46.27 2.57
2506 9485 8.339714 CAATTTGTGCTGTTTTTCAGAAATCAT 58.660 29.630 0.00 0.00 46.27 2.45
2507 9486 6.831727 TTGTGCTGTTTTTCAGAAATCATG 57.168 33.333 0.00 0.00 46.27 3.07
2508 9487 6.146601 TGTGCTGTTTTTCAGAAATCATGA 57.853 33.333 0.00 0.00 46.27 3.07
2509 9488 6.210796 TGTGCTGTTTTTCAGAAATCATGAG 58.789 36.000 0.09 0.00 46.27 2.90
2510 9489 5.118203 GTGCTGTTTTTCAGAAATCATGAGC 59.882 40.000 0.09 1.96 46.27 4.26
2511 9490 5.010314 TGCTGTTTTTCAGAAATCATGAGCT 59.990 36.000 0.09 0.00 46.27 4.09
2512 9491 5.345202 GCTGTTTTTCAGAAATCATGAGCTG 59.655 40.000 13.82 13.82 46.27 4.24
2513 9492 6.395426 TGTTTTTCAGAAATCATGAGCTGT 57.605 33.333 17.42 0.00 0.00 4.40
2514 9493 6.808829 TGTTTTTCAGAAATCATGAGCTGTT 58.191 32.000 17.42 3.90 0.00 3.16
2515 9494 6.698329 TGTTTTTCAGAAATCATGAGCTGTTG 59.302 34.615 17.42 6.74 0.00 3.33
2516 9495 6.638096 TTTTCAGAAATCATGAGCTGTTGA 57.362 33.333 17.42 8.52 0.00 3.18
2517 9496 6.829229 TTTCAGAAATCATGAGCTGTTGAT 57.171 33.333 17.42 0.00 34.08 2.57
2518 9497 7.926674 TTTCAGAAATCATGAGCTGTTGATA 57.073 32.000 17.42 5.13 32.40 2.15
2519 9498 7.926674 TTCAGAAATCATGAGCTGTTGATAA 57.073 32.000 17.42 6.50 32.40 1.75
2520 9499 7.926674 TCAGAAATCATGAGCTGTTGATAAA 57.073 32.000 17.42 0.86 32.40 1.40
2521 9500 8.339344 TCAGAAATCATGAGCTGTTGATAAAA 57.661 30.769 17.42 0.33 32.40 1.52
2522 9501 8.795513 TCAGAAATCATGAGCTGTTGATAAAAA 58.204 29.630 17.42 0.00 32.40 1.94
2523 9502 9.582431 CAGAAATCATGAGCTGTTGATAAAAAT 57.418 29.630 0.09 0.00 32.40 1.82
2524 9503 9.582431 AGAAATCATGAGCTGTTGATAAAAATG 57.418 29.630 0.09 0.00 32.40 2.32
2525 9504 9.362539 GAAATCATGAGCTGTTGATAAAAATGT 57.637 29.630 0.09 0.00 32.40 2.71
2526 9505 8.697846 AATCATGAGCTGTTGATAAAAATGTG 57.302 30.769 0.09 0.00 32.40 3.21
2527 9506 6.094719 TCATGAGCTGTTGATAAAAATGTGC 58.905 36.000 0.00 0.00 0.00 4.57
2528 9507 5.450592 TGAGCTGTTGATAAAAATGTGCA 57.549 34.783 0.00 0.00 0.00 4.57
2529 9508 5.463286 TGAGCTGTTGATAAAAATGTGCAG 58.537 37.500 0.00 0.00 0.00 4.41
2530 9509 5.009911 TGAGCTGTTGATAAAAATGTGCAGT 59.990 36.000 0.00 0.00 0.00 4.40
2531 9510 5.846203 AGCTGTTGATAAAAATGTGCAGTT 58.154 33.333 0.00 0.00 0.00 3.16
2532 9511 5.922544 AGCTGTTGATAAAAATGTGCAGTTC 59.077 36.000 0.00 0.00 0.00 3.01
2533 9512 5.691305 GCTGTTGATAAAAATGTGCAGTTCA 59.309 36.000 0.00 0.00 0.00 3.18
2534 9513 6.200665 GCTGTTGATAAAAATGTGCAGTTCAA 59.799 34.615 0.00 0.00 0.00 2.69
2535 9514 7.254387 GCTGTTGATAAAAATGTGCAGTTCAAA 60.254 33.333 0.00 0.00 0.00 2.69
2536 9515 8.659925 TGTTGATAAAAATGTGCAGTTCAAAT 57.340 26.923 0.00 0.00 0.00 2.32
2537 9516 8.549548 TGTTGATAAAAATGTGCAGTTCAAATG 58.450 29.630 0.00 0.00 0.00 2.32
2538 9517 8.550376 GTTGATAAAAATGTGCAGTTCAAATGT 58.450 29.630 0.00 0.00 0.00 2.71
2539 9518 8.659925 TGATAAAAATGTGCAGTTCAAATGTT 57.340 26.923 0.00 0.00 0.00 2.71
2540 9519 8.763356 TGATAAAAATGTGCAGTTCAAATGTTC 58.237 29.630 0.00 0.00 0.00 3.18
2541 9520 8.891671 ATAAAAATGTGCAGTTCAAATGTTCT 57.108 26.923 0.00 0.00 0.00 3.01
2542 9521 9.979578 ATAAAAATGTGCAGTTCAAATGTTCTA 57.020 25.926 0.00 0.00 0.00 2.10
2543 9522 8.715191 AAAAATGTGCAGTTCAAATGTTCTAA 57.285 26.923 0.00 0.00 0.00 2.10
2544 9523 7.935338 AAATGTGCAGTTCAAATGTTCTAAG 57.065 32.000 0.00 0.00 0.00 2.18
2545 9524 4.858935 TGTGCAGTTCAAATGTTCTAAGC 58.141 39.130 0.00 0.00 0.00 3.09
2546 9525 4.337836 TGTGCAGTTCAAATGTTCTAAGCA 59.662 37.500 0.00 0.00 0.00 3.91
2547 9526 5.163571 TGTGCAGTTCAAATGTTCTAAGCAA 60.164 36.000 0.00 0.00 0.00 3.91
2548 9527 5.922544 GTGCAGTTCAAATGTTCTAAGCAAT 59.077 36.000 0.00 0.00 0.00 3.56
2549 9528 7.083858 GTGCAGTTCAAATGTTCTAAGCAATA 58.916 34.615 0.00 0.00 0.00 1.90
2550 9529 7.272084 GTGCAGTTCAAATGTTCTAAGCAATAG 59.728 37.037 0.00 0.00 0.00 1.73
2551 9530 7.174772 TGCAGTTCAAATGTTCTAAGCAATAGA 59.825 33.333 0.00 0.00 38.90 1.98
2552 9531 8.023128 GCAGTTCAAATGTTCTAAGCAATAGAA 58.977 33.333 7.65 7.65 46.09 2.10
2564 9543 9.847706 TTCTAAGCAATAGAAATCTATAGAGCG 57.152 33.333 8.70 0.00 45.47 5.03
2565 9544 9.232473 TCTAAGCAATAGAAATCTATAGAGCGA 57.768 33.333 8.70 0.00 38.15 4.93
2567 9546 8.700722 AAGCAATAGAAATCTATAGAGCGATG 57.299 34.615 8.70 2.67 38.15 3.84
2568 9547 7.264221 AGCAATAGAAATCTATAGAGCGATGG 58.736 38.462 8.70 1.86 38.15 3.51
2569 9548 7.123397 AGCAATAGAAATCTATAGAGCGATGGA 59.877 37.037 8.70 0.00 38.15 3.41
2570 9549 7.925483 GCAATAGAAATCTATAGAGCGATGGAT 59.075 37.037 8.70 0.00 38.15 3.41
2571 9550 9.247126 CAATAGAAATCTATAGAGCGATGGATG 57.753 37.037 8.70 0.00 38.15 3.51
2572 9551 8.759481 ATAGAAATCTATAGAGCGATGGATGA 57.241 34.615 8.70 0.00 37.40 2.92
2573 9552 7.473735 AGAAATCTATAGAGCGATGGATGAA 57.526 36.000 8.70 0.00 28.42 2.57
2574 9553 8.076910 AGAAATCTATAGAGCGATGGATGAAT 57.923 34.615 8.70 0.00 28.42 2.57
2575 9554 8.538701 AGAAATCTATAGAGCGATGGATGAATT 58.461 33.333 8.70 0.00 28.42 2.17
2576 9555 8.489990 AAATCTATAGAGCGATGGATGAATTG 57.510 34.615 8.70 0.00 28.42 2.32
2577 9556 6.840780 TCTATAGAGCGATGGATGAATTGA 57.159 37.500 0.00 0.00 0.00 2.57
2578 9557 6.861144 TCTATAGAGCGATGGATGAATTGAG 58.139 40.000 0.00 0.00 0.00 3.02
2579 9558 3.834489 AGAGCGATGGATGAATTGAGT 57.166 42.857 0.00 0.00 0.00 3.41
2580 9559 4.944619 AGAGCGATGGATGAATTGAGTA 57.055 40.909 0.00 0.00 0.00 2.59
2581 9560 5.480642 AGAGCGATGGATGAATTGAGTAT 57.519 39.130 0.00 0.00 0.00 2.12
2582 9561 5.862845 AGAGCGATGGATGAATTGAGTATT 58.137 37.500 0.00 0.00 0.00 1.89
2583 9562 6.997655 AGAGCGATGGATGAATTGAGTATTA 58.002 36.000 0.00 0.00 0.00 0.98
2584 9563 7.445121 AGAGCGATGGATGAATTGAGTATTAA 58.555 34.615 0.00 0.00 0.00 1.40
2585 9564 7.933577 AGAGCGATGGATGAATTGAGTATTAAA 59.066 33.333 0.00 0.00 0.00 1.52
2586 9565 8.450578 AGCGATGGATGAATTGAGTATTAAAA 57.549 30.769 0.00 0.00 0.00 1.52
2587 9566 8.902806 AGCGATGGATGAATTGAGTATTAAAAA 58.097 29.630 0.00 0.00 0.00 1.94
2663 12339 6.237901 AGTACAGCAATTGGACATACTTTCA 58.762 36.000 7.72 0.00 43.63 2.69
2719 12677 2.440539 TCGAGCTGTGGAAGAAGAAC 57.559 50.000 0.00 0.00 0.00 3.01
2756 14639 2.349817 GCTTATTGGACCATCGCAATCG 60.350 50.000 0.00 0.00 0.00 3.34
2791 14674 4.824537 TGCACTAAAACTGAAACTATGGCA 59.175 37.500 0.00 0.00 0.00 4.92
2799 14682 4.202441 ACTGAAACTATGGCATGGATCAC 58.798 43.478 18.36 4.82 0.00 3.06
2812 14726 1.277273 TGGATCACCTCTGTTCAGCAG 59.723 52.381 0.00 0.00 46.34 4.24
2839 14753 5.105752 CTTGATTCAAGAGCTTAGTAGCGT 58.894 41.667 19.61 0.00 43.42 5.07
2877 14791 6.861055 GTGAAGCTCTAGACTGATATAAGTGC 59.139 42.308 0.00 0.00 0.00 4.40
2880 14794 5.830457 AGCTCTAGACTGATATAAGTGCACA 59.170 40.000 21.04 0.00 0.00 4.57
2905 14857 1.989165 GCATTACCATCTCGATCGAGC 59.011 52.381 34.92 20.00 41.71 5.03
2911 14863 1.393726 CATCTCGATCGAGCAGAACG 58.606 55.000 34.92 15.16 44.98 3.95
2914 14866 1.715862 CTCGATCGAGCAGAACGGGA 61.716 60.000 30.41 0.00 46.89 5.14
2949 14901 4.436986 GGCGGAATAAGTTTCAGTAACAGC 60.437 45.833 0.00 0.00 39.30 4.40
2957 14909 5.679734 AGTTTCAGTAACAGCATGACAAG 57.320 39.130 0.00 0.00 39.69 3.16
2966 14918 3.341823 ACAGCATGACAAGAATCAGGAC 58.658 45.455 0.00 0.00 39.69 3.85
2976 14928 2.787994 AGAATCAGGACCAACAGCAAG 58.212 47.619 0.00 0.00 0.00 4.01
3029 15037 4.647399 AGTGTCAGTAGGAGGAAGCTAATC 59.353 45.833 0.00 0.00 0.00 1.75
3055 15063 7.606839 CCTATTGATCACATTACATGCTCTCAT 59.393 37.037 0.00 0.00 0.00 2.90
3068 15076 0.108138 CTCTCATCCCGTGGTGGTTC 60.108 60.000 0.00 0.00 35.15 3.62
3085 15093 1.584308 GTTCGAGAGTTCGTGCATAGC 59.416 52.381 0.00 0.00 46.72 2.97
3086 15094 0.808755 TCGAGAGTTCGTGCATAGCA 59.191 50.000 0.00 0.00 46.72 3.49
3146 15156 1.019278 ATCATCGTGTTGGTCGCCAC 61.019 55.000 0.00 0.00 30.78 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 4226 2.632996 TGTTCCTGAAGACGATCCTTGT 59.367 45.455 0.00 0.00 0.00 3.16
104 4247 0.981183 TCAGGTACCGACAATTGCCT 59.019 50.000 6.18 0.00 0.00 4.75
199 4352 1.155424 GCCGTTCGTTCACCAGTCAA 61.155 55.000 0.00 0.00 0.00 3.18
205 4358 3.482436 CGTATTTTAGCCGTTCGTTCACC 60.482 47.826 0.00 0.00 0.00 4.02
206 4359 3.652478 CGTATTTTAGCCGTTCGTTCAC 58.348 45.455 0.00 0.00 0.00 3.18
207 4360 2.092524 GCGTATTTTAGCCGTTCGTTCA 59.907 45.455 0.00 0.00 0.00 3.18
208 4361 2.346545 AGCGTATTTTAGCCGTTCGTTC 59.653 45.455 0.00 0.00 0.00 3.95
209 4362 2.340337 AGCGTATTTTAGCCGTTCGTT 58.660 42.857 0.00 0.00 0.00 3.85
210 4363 1.922545 GAGCGTATTTTAGCCGTTCGT 59.077 47.619 0.00 0.00 0.00 3.85
211 4364 1.921887 TGAGCGTATTTTAGCCGTTCG 59.078 47.619 0.00 0.00 35.04 3.95
212 4365 2.669434 TGTGAGCGTATTTTAGCCGTTC 59.331 45.455 0.00 0.00 33.27 3.95
213 4366 2.690786 TGTGAGCGTATTTTAGCCGTT 58.309 42.857 0.00 0.00 0.00 4.44
214 4367 2.373540 TGTGAGCGTATTTTAGCCGT 57.626 45.000 0.00 0.00 0.00 5.68
215 4368 3.733024 TTTGTGAGCGTATTTTAGCCG 57.267 42.857 0.00 0.00 0.00 5.52
216 4369 4.155280 TCCTTTTGTGAGCGTATTTTAGCC 59.845 41.667 0.00 0.00 0.00 3.93
218 4371 6.721571 TCTCCTTTTGTGAGCGTATTTTAG 57.278 37.500 0.00 0.00 0.00 1.85
219 4372 6.876789 TGATCTCCTTTTGTGAGCGTATTTTA 59.123 34.615 0.00 0.00 0.00 1.52
220 4373 5.705441 TGATCTCCTTTTGTGAGCGTATTTT 59.295 36.000 0.00 0.00 0.00 1.82
221 4374 5.245531 TGATCTCCTTTTGTGAGCGTATTT 58.754 37.500 0.00 0.00 0.00 1.40
222 4375 4.832248 TGATCTCCTTTTGTGAGCGTATT 58.168 39.130 0.00 0.00 0.00 1.89
223 4376 4.471904 TGATCTCCTTTTGTGAGCGTAT 57.528 40.909 0.00 0.00 0.00 3.06
224 4377 3.953712 TGATCTCCTTTTGTGAGCGTA 57.046 42.857 0.00 0.00 0.00 4.42
226 4379 2.159787 CGTTGATCTCCTTTTGTGAGCG 60.160 50.000 0.00 0.00 0.00 5.03
228 4381 4.058124 TGTCGTTGATCTCCTTTTGTGAG 58.942 43.478 0.00 0.00 0.00 3.51
233 4386 3.005472 TCGACTGTCGTTGATCTCCTTTT 59.995 43.478 27.16 0.00 41.35 2.27
234 4387 2.557056 TCGACTGTCGTTGATCTCCTTT 59.443 45.455 27.16 0.00 41.35 3.11
235 4388 2.160205 TCGACTGTCGTTGATCTCCTT 58.840 47.619 27.16 0.00 41.35 3.36
236 4389 1.740585 CTCGACTGTCGTTGATCTCCT 59.259 52.381 27.16 0.00 41.35 3.69
237 4390 1.738350 TCTCGACTGTCGTTGATCTCC 59.262 52.381 27.16 0.00 41.35 3.71
238 4391 2.223157 CCTCTCGACTGTCGTTGATCTC 60.223 54.545 27.16 0.00 41.35 2.75
240 4393 1.738350 TCCTCTCGACTGTCGTTGATC 59.262 52.381 27.16 0.00 41.35 2.92
241 4394 1.822506 TCCTCTCGACTGTCGTTGAT 58.177 50.000 27.16 0.00 41.35 2.57
243 4396 1.535896 TCTTCCTCTCGACTGTCGTTG 59.464 52.381 27.16 20.66 41.35 4.10
244 4397 1.536331 GTCTTCCTCTCGACTGTCGTT 59.464 52.381 27.16 0.00 41.35 3.85
245 4398 1.158434 GTCTTCCTCTCGACTGTCGT 58.842 55.000 27.16 0.00 41.35 4.34
246 4399 1.444836 AGTCTTCCTCTCGACTGTCG 58.555 55.000 23.33 23.33 38.94 4.35
250 4403 1.543802 CAAGCAGTCTTCCTCTCGACT 59.456 52.381 0.00 0.00 40.92 4.18
251 4404 1.403514 CCAAGCAGTCTTCCTCTCGAC 60.404 57.143 0.00 0.00 0.00 4.20
252 4405 0.891373 CCAAGCAGTCTTCCTCTCGA 59.109 55.000 0.00 0.00 0.00 4.04
253 4406 0.108424 CCCAAGCAGTCTTCCTCTCG 60.108 60.000 0.00 0.00 0.00 4.04
254 4407 0.980423 ACCCAAGCAGTCTTCCTCTC 59.020 55.000 0.00 0.00 0.00 3.20
256 4409 1.882623 CAAACCCAAGCAGTCTTCCTC 59.117 52.381 0.00 0.00 0.00 3.71
258 4411 1.981256 TCAAACCCAAGCAGTCTTCC 58.019 50.000 0.00 0.00 0.00 3.46
259 4412 4.550422 GAAATCAAACCCAAGCAGTCTTC 58.450 43.478 0.00 0.00 0.00 2.87
261 4414 2.893489 GGAAATCAAACCCAAGCAGTCT 59.107 45.455 0.00 0.00 0.00 3.24
264 4417 1.067635 CCGGAAATCAAACCCAAGCAG 60.068 52.381 0.00 0.00 0.00 4.24
266 4419 0.389817 GCCGGAAATCAAACCCAAGC 60.390 55.000 5.05 0.00 0.00 4.01
267 4420 0.965439 TGCCGGAAATCAAACCCAAG 59.035 50.000 5.05 0.00 0.00 3.61
268 4421 0.676736 GTGCCGGAAATCAAACCCAA 59.323 50.000 5.05 0.00 0.00 4.12
269 4422 1.519751 CGTGCCGGAAATCAAACCCA 61.520 55.000 5.05 0.00 0.00 4.51
312 4531 4.453136 GGACTAACGGCTACAATTGTGAAA 59.547 41.667 21.42 0.00 0.00 2.69
320 4539 2.241160 TGACAGGACTAACGGCTACAA 58.759 47.619 0.00 0.00 0.00 2.41
326 4545 0.102481 CCGGATGACAGGACTAACGG 59.898 60.000 0.00 0.00 33.26 4.44
327 4546 0.815734 ACCGGATGACAGGACTAACG 59.184 55.000 9.46 0.00 35.41 3.18
328 4547 2.100989 AGACCGGATGACAGGACTAAC 58.899 52.381 9.46 0.00 35.29 2.34
329 4548 2.100197 CAGACCGGATGACAGGACTAA 58.900 52.381 9.46 0.00 35.29 2.24
330 4549 1.005569 ACAGACCGGATGACAGGACTA 59.994 52.381 9.46 0.00 35.29 2.59
331 4550 0.251832 ACAGACCGGATGACAGGACT 60.252 55.000 9.46 0.00 36.96 3.85
332 4551 0.173708 GACAGACCGGATGACAGGAC 59.826 60.000 9.46 0.00 35.41 3.85
333 4552 0.251608 TGACAGACCGGATGACAGGA 60.252 55.000 9.46 0.00 35.41 3.86
334 4553 0.826715 ATGACAGACCGGATGACAGG 59.173 55.000 9.46 0.00 37.39 4.00
335 4554 1.202463 GGATGACAGACCGGATGACAG 60.202 57.143 9.46 0.00 0.00 3.51
337 4556 0.249073 CGGATGACAGACCGGATGAC 60.249 60.000 9.46 7.73 44.59 3.06
338 4557 2.115510 CGGATGACAGACCGGATGA 58.884 57.895 9.46 0.00 44.59 2.92
339 4558 4.738198 CGGATGACAGACCGGATG 57.262 61.111 9.46 9.45 44.59 3.51
344 4563 2.501610 GAGGCCGGATGACAGACC 59.498 66.667 5.05 0.00 0.00 3.85
345 4564 2.105128 CGAGGCCGGATGACAGAC 59.895 66.667 5.05 0.00 0.00 3.51
346 4565 3.838271 GCGAGGCCGGATGACAGA 61.838 66.667 5.05 0.00 36.06 3.41
406 4625 0.917259 CTTCGCGATCAAGTTCCTCG 59.083 55.000 10.88 0.31 35.57 4.63
517 4777 3.723348 GAAACGACCGGCTGCCAC 61.723 66.667 20.29 8.37 0.00 5.01
518 4778 3.936203 AGAAACGACCGGCTGCCA 61.936 61.111 20.29 0.00 0.00 4.92
639 4935 1.595382 CCGCCTCCAATCCATCGAC 60.595 63.158 0.00 0.00 0.00 4.20
778 7257 1.327156 GTTTTCGTTTGACCGACGGAA 59.673 47.619 23.38 5.29 40.70 4.30
779 7258 0.929615 GTTTTCGTTTGACCGACGGA 59.070 50.000 23.38 0.00 40.70 4.69
807 7286 1.339291 GCTCACAGCTTCTTTGCCTTT 59.661 47.619 0.00 0.00 38.45 3.11
844 7329 2.086869 AGTCGCCATGGAATTCAGTTG 58.913 47.619 18.40 1.43 0.00 3.16
875 7360 1.810151 TGGCTATTTGTTTCGACAGGC 59.190 47.619 0.00 0.00 0.00 4.85
966 7477 1.403679 CGAACTGCTTTGTTGGTGGAA 59.596 47.619 0.00 0.00 0.00 3.53
1200 7736 1.070786 GAGGAACTTGACGGCCACA 59.929 57.895 2.24 0.00 41.55 4.17
1249 7806 1.792506 CGCTCAAGATCTTCGACGCG 61.793 60.000 21.39 21.39 0.00 6.01
1250 7807 1.475441 CCGCTCAAGATCTTCGACGC 61.475 60.000 14.64 13.71 0.00 5.19
1296 7853 1.002624 GACGATGCAGGGGTTTCCA 60.003 57.895 0.00 0.00 38.24 3.53
1307 7864 2.956964 CCTCGAAGCCGACGATGC 60.957 66.667 0.00 0.00 40.30 3.91
1309 7866 4.208686 GCCCTCGAAGCCGACGAT 62.209 66.667 0.00 0.00 40.30 3.73
1381 7938 3.465403 CTGGAGGCTCGACCCCTG 61.465 72.222 8.69 0.00 40.58 4.45
1385 7942 1.183549 TAAAGACTGGAGGCTCGACC 58.816 55.000 8.69 0.00 39.61 4.79
1599 8448 4.778143 GGCGGCCAGTCGGACATT 62.778 66.667 15.62 0.00 42.68 2.71
2142 9015 1.761784 AGATTCTTCTCTGGCATCGCT 59.238 47.619 0.00 0.00 0.00 4.93
2178 9051 3.058160 GCTGCGTTCCACATGGCT 61.058 61.111 0.00 0.00 34.44 4.75
2182 9055 3.425713 CTGCGCTGCGTTCCACAT 61.426 61.111 24.04 0.00 0.00 3.21
2199 9072 1.335689 ACAGAGTTCCGTTACACTCGC 60.336 52.381 0.00 0.00 43.69 5.03
2209 9082 4.038042 TGCCTCATCTAATACAGAGTTCCG 59.962 45.833 0.00 0.00 36.48 4.30
2230 9125 8.725148 AGTTTATGCTAGCATTTACATAGATGC 58.275 33.333 33.74 9.98 46.88 3.91
2263 9188 3.428045 GGCTCATCCAAGCACAATTACAC 60.428 47.826 0.00 0.00 44.35 2.90
2313 9269 4.018960 ACACTATCAAGGTGCCAAGAATCT 60.019 41.667 0.00 0.00 38.14 2.40
2317 9273 3.411446 CAACACTATCAAGGTGCCAAGA 58.589 45.455 0.00 0.00 38.14 3.02
2326 9282 2.496899 ACCAGGGCAACACTATCAAG 57.503 50.000 0.00 0.00 39.74 3.02
2328 9284 2.969821 AAACCAGGGCAACACTATCA 57.030 45.000 0.00 0.00 39.74 2.15
2330 9286 3.157087 CAGAAAACCAGGGCAACACTAT 58.843 45.455 0.00 0.00 39.74 2.12
2339 9318 5.711976 ACACATAGAATTCAGAAAACCAGGG 59.288 40.000 8.44 0.00 0.00 4.45
2380 9359 6.849085 ACAGTTACACATCTCTGATTCTCT 57.151 37.500 0.00 0.00 0.00 3.10
2381 9360 7.704472 CCTTACAGTTACACATCTCTGATTCTC 59.296 40.741 0.00 0.00 0.00 2.87
2382 9361 7.179338 ACCTTACAGTTACACATCTCTGATTCT 59.821 37.037 0.00 0.00 0.00 2.40
2383 9362 7.324178 ACCTTACAGTTACACATCTCTGATTC 58.676 38.462 0.00 0.00 0.00 2.52
2384 9363 7.246171 ACCTTACAGTTACACATCTCTGATT 57.754 36.000 0.00 0.00 0.00 2.57
2385 9364 6.859112 ACCTTACAGTTACACATCTCTGAT 57.141 37.500 0.00 0.00 0.00 2.90
2386 9365 6.041637 ACAACCTTACAGTTACACATCTCTGA 59.958 38.462 0.00 0.00 0.00 3.27
2387 9366 6.146184 CACAACCTTACAGTTACACATCTCTG 59.854 42.308 0.00 0.00 0.00 3.35
2388 9367 6.183360 ACACAACCTTACAGTTACACATCTCT 60.183 38.462 0.00 0.00 0.00 3.10
2389 9368 5.989777 ACACAACCTTACAGTTACACATCTC 59.010 40.000 0.00 0.00 0.00 2.75
2390 9369 5.925509 ACACAACCTTACAGTTACACATCT 58.074 37.500 0.00 0.00 0.00 2.90
2391 9370 6.259167 TGAACACAACCTTACAGTTACACATC 59.741 38.462 0.00 0.00 0.00 3.06
2392 9371 6.116806 TGAACACAACCTTACAGTTACACAT 58.883 36.000 0.00 0.00 0.00 3.21
2393 9372 5.489249 TGAACACAACCTTACAGTTACACA 58.511 37.500 0.00 0.00 0.00 3.72
2394 9373 5.813672 TCTGAACACAACCTTACAGTTACAC 59.186 40.000 0.00 0.00 0.00 2.90
2395 9374 5.979993 TCTGAACACAACCTTACAGTTACA 58.020 37.500 0.00 0.00 0.00 2.41
2396 9375 6.278363 TCTCTGAACACAACCTTACAGTTAC 58.722 40.000 0.00 0.00 0.00 2.50
2397 9376 6.474140 TCTCTGAACACAACCTTACAGTTA 57.526 37.500 0.00 0.00 0.00 2.24
2398 9377 5.353394 TCTCTGAACACAACCTTACAGTT 57.647 39.130 0.00 0.00 0.00 3.16
2399 9378 5.552870 ATCTCTGAACACAACCTTACAGT 57.447 39.130 0.00 0.00 0.00 3.55
2400 9379 5.991606 TGAATCTCTGAACACAACCTTACAG 59.008 40.000 0.00 0.00 0.00 2.74
2401 9380 5.924356 TGAATCTCTGAACACAACCTTACA 58.076 37.500 0.00 0.00 0.00 2.41
2402 9381 7.440523 AATGAATCTCTGAACACAACCTTAC 57.559 36.000 0.00 0.00 0.00 2.34
2403 9382 8.154203 TGTAATGAATCTCTGAACACAACCTTA 58.846 33.333 0.00 0.00 0.00 2.69
2404 9383 6.998074 TGTAATGAATCTCTGAACACAACCTT 59.002 34.615 0.00 0.00 0.00 3.50
2405 9384 6.533730 TGTAATGAATCTCTGAACACAACCT 58.466 36.000 0.00 0.00 0.00 3.50
2406 9385 6.428159 ACTGTAATGAATCTCTGAACACAACC 59.572 38.462 0.00 0.00 0.00 3.77
2407 9386 7.293745 CACTGTAATGAATCTCTGAACACAAC 58.706 38.462 0.00 0.00 0.00 3.32
2408 9387 6.073058 GCACTGTAATGAATCTCTGAACACAA 60.073 38.462 0.00 0.00 0.00 3.33
2409 9388 5.409520 GCACTGTAATGAATCTCTGAACACA 59.590 40.000 0.00 0.00 0.00 3.72
2410 9389 5.641209 AGCACTGTAATGAATCTCTGAACAC 59.359 40.000 0.00 0.00 0.00 3.32
2411 9390 5.640783 CAGCACTGTAATGAATCTCTGAACA 59.359 40.000 0.00 0.00 0.00 3.18
2412 9391 5.871524 TCAGCACTGTAATGAATCTCTGAAC 59.128 40.000 0.00 0.00 0.00 3.18
2413 9392 5.871524 GTCAGCACTGTAATGAATCTCTGAA 59.128 40.000 0.00 0.00 31.03 3.02
2414 9393 5.047092 TGTCAGCACTGTAATGAATCTCTGA 60.047 40.000 0.00 0.00 0.00 3.27
2415 9394 5.173664 TGTCAGCACTGTAATGAATCTCTG 58.826 41.667 0.00 0.00 0.00 3.35
2416 9395 5.411831 TGTCAGCACTGTAATGAATCTCT 57.588 39.130 0.00 0.00 0.00 3.10
2417 9396 7.440556 ACATATGTCAGCACTGTAATGAATCTC 59.559 37.037 1.41 0.00 0.00 2.75
2418 9397 7.278135 ACATATGTCAGCACTGTAATGAATCT 58.722 34.615 1.41 0.00 0.00 2.40
2419 9398 7.488187 ACATATGTCAGCACTGTAATGAATC 57.512 36.000 1.41 0.00 0.00 2.52
2420 9399 7.337689 ACAACATATGTCAGCACTGTAATGAAT 59.662 33.333 9.23 0.00 37.96 2.57
2421 9400 6.654582 ACAACATATGTCAGCACTGTAATGAA 59.345 34.615 9.23 0.00 37.96 2.57
2422 9401 6.172630 ACAACATATGTCAGCACTGTAATGA 58.827 36.000 9.23 0.00 37.96 2.57
2423 9402 6.426980 ACAACATATGTCAGCACTGTAATG 57.573 37.500 9.23 1.61 37.96 1.90
2424 9403 7.452880 AAACAACATATGTCAGCACTGTAAT 57.547 32.000 9.23 0.00 42.99 1.89
2425 9404 6.875948 AAACAACATATGTCAGCACTGTAA 57.124 33.333 9.23 0.00 42.99 2.41
2426 9405 6.931840 TGTAAACAACATATGTCAGCACTGTA 59.068 34.615 9.23 0.00 42.99 2.74
2427 9406 5.762711 TGTAAACAACATATGTCAGCACTGT 59.237 36.000 9.23 5.80 42.99 3.55
2428 9407 6.239908 TGTAAACAACATATGTCAGCACTG 57.760 37.500 9.23 5.13 42.99 3.66
2441 9420 7.918033 CAGTAACAATTGACCATGTAAACAACA 59.082 33.333 13.59 0.00 43.86 3.33
2442 9421 8.132362 TCAGTAACAATTGACCATGTAAACAAC 58.868 33.333 13.59 0.00 0.00 3.32
2443 9422 8.226819 TCAGTAACAATTGACCATGTAAACAA 57.773 30.769 13.59 0.00 0.00 2.83
2444 9423 7.500892 ACTCAGTAACAATTGACCATGTAAACA 59.499 33.333 13.59 0.00 0.00 2.83
2445 9424 7.871853 ACTCAGTAACAATTGACCATGTAAAC 58.128 34.615 13.59 0.00 0.00 2.01
2446 9425 8.458573 AACTCAGTAACAATTGACCATGTAAA 57.541 30.769 13.59 0.00 0.00 2.01
2447 9426 9.733556 ATAACTCAGTAACAATTGACCATGTAA 57.266 29.630 13.59 0.00 0.00 2.41
2449 9428 9.162764 GTATAACTCAGTAACAATTGACCATGT 57.837 33.333 13.59 0.00 0.00 3.21
2450 9429 9.383519 AGTATAACTCAGTAACAATTGACCATG 57.616 33.333 13.59 5.86 0.00 3.66
2451 9430 9.383519 CAGTATAACTCAGTAACAATTGACCAT 57.616 33.333 13.59 0.00 0.00 3.55
2452 9431 7.333423 GCAGTATAACTCAGTAACAATTGACCA 59.667 37.037 13.59 0.00 0.00 4.02
2453 9432 7.333423 TGCAGTATAACTCAGTAACAATTGACC 59.667 37.037 13.59 0.00 0.00 4.02
2454 9433 8.169268 GTGCAGTATAACTCAGTAACAATTGAC 58.831 37.037 13.59 0.17 0.00 3.18
2455 9434 7.875554 TGTGCAGTATAACTCAGTAACAATTGA 59.124 33.333 13.59 0.00 0.00 2.57
2456 9435 8.028540 TGTGCAGTATAACTCAGTAACAATTG 57.971 34.615 3.24 3.24 0.00 2.32
2457 9436 8.615878 TTGTGCAGTATAACTCAGTAACAATT 57.384 30.769 0.00 0.00 0.00 2.32
2458 9437 8.792830 ATTGTGCAGTATAACTCAGTAACAAT 57.207 30.769 0.00 0.00 0.00 2.71
2459 9438 8.615878 AATTGTGCAGTATAACTCAGTAACAA 57.384 30.769 0.00 0.00 0.00 2.83
2460 9439 8.503196 CAAATTGTGCAGTATAACTCAGTAACA 58.497 33.333 0.00 0.00 0.00 2.41
2461 9440 8.504005 ACAAATTGTGCAGTATAACTCAGTAAC 58.496 33.333 0.00 0.00 0.00 2.50
2462 9441 8.503196 CACAAATTGTGCAGTATAACTCAGTAA 58.497 33.333 13.51 0.00 41.89 2.24
2463 9442 8.028540 CACAAATTGTGCAGTATAACTCAGTA 57.971 34.615 13.51 0.00 41.89 2.74
2464 9443 6.902341 CACAAATTGTGCAGTATAACTCAGT 58.098 36.000 13.51 0.00 41.89 3.41
2479 9458 7.333921 TGATTTCTGAAAAACAGCACAAATTGT 59.666 29.630 6.95 0.00 45.38 2.71
2480 9459 7.686519 TGATTTCTGAAAAACAGCACAAATTG 58.313 30.769 6.95 0.00 45.38 2.32
2481 9460 7.846644 TGATTTCTGAAAAACAGCACAAATT 57.153 28.000 6.95 0.00 45.38 1.82
2482 9461 7.711772 TCATGATTTCTGAAAAACAGCACAAAT 59.288 29.630 6.95 0.00 45.38 2.32
2483 9462 7.040494 TCATGATTTCTGAAAAACAGCACAAA 58.960 30.769 6.95 0.00 45.38 2.83
2484 9463 6.571605 TCATGATTTCTGAAAAACAGCACAA 58.428 32.000 6.95 0.00 45.38 3.33
2485 9464 6.146601 TCATGATTTCTGAAAAACAGCACA 57.853 33.333 6.95 0.84 45.38 4.57
2486 9465 5.118203 GCTCATGATTTCTGAAAAACAGCAC 59.882 40.000 6.95 0.38 45.38 4.40
2487 9466 5.010314 AGCTCATGATTTCTGAAAAACAGCA 59.990 36.000 6.95 0.00 45.38 4.41
2488 9467 5.345202 CAGCTCATGATTTCTGAAAAACAGC 59.655 40.000 6.95 9.99 45.38 4.40
2489 9468 6.444633 ACAGCTCATGATTTCTGAAAAACAG 58.555 36.000 20.00 0.00 46.97 3.16
2490 9469 6.395426 ACAGCTCATGATTTCTGAAAAACA 57.605 33.333 20.00 10.64 32.54 2.83
2491 9470 6.919662 TCAACAGCTCATGATTTCTGAAAAAC 59.080 34.615 20.00 5.49 0.00 2.43
2492 9471 7.041635 TCAACAGCTCATGATTTCTGAAAAA 57.958 32.000 20.00 0.00 0.00 1.94
2493 9472 6.638096 TCAACAGCTCATGATTTCTGAAAA 57.362 33.333 20.00 0.00 0.00 2.29
2494 9473 6.829229 ATCAACAGCTCATGATTTCTGAAA 57.171 33.333 20.00 5.15 32.47 2.69
2495 9474 7.926674 TTATCAACAGCTCATGATTTCTGAA 57.073 32.000 20.00 9.81 37.46 3.02
2496 9475 7.926674 TTTATCAACAGCTCATGATTTCTGA 57.073 32.000 20.00 10.42 37.46 3.27
2497 9476 8.975410 TTTTTATCAACAGCTCATGATTTCTG 57.025 30.769 14.24 14.49 37.46 3.02
2498 9477 9.582431 CATTTTTATCAACAGCTCATGATTTCT 57.418 29.630 14.24 0.00 37.46 2.52
2499 9478 9.362539 ACATTTTTATCAACAGCTCATGATTTC 57.637 29.630 14.24 0.00 37.46 2.17
2500 9479 9.146984 CACATTTTTATCAACAGCTCATGATTT 57.853 29.630 14.24 0.00 37.46 2.17
2501 9480 7.277098 GCACATTTTTATCAACAGCTCATGATT 59.723 33.333 14.24 2.24 37.46 2.57
2502 9481 6.755141 GCACATTTTTATCAACAGCTCATGAT 59.245 34.615 13.67 13.67 39.50 2.45
2503 9482 6.094719 GCACATTTTTATCAACAGCTCATGA 58.905 36.000 0.00 0.00 0.00 3.07
2504 9483 5.865013 TGCACATTTTTATCAACAGCTCATG 59.135 36.000 0.00 0.00 0.00 3.07
2505 9484 6.028146 TGCACATTTTTATCAACAGCTCAT 57.972 33.333 0.00 0.00 0.00 2.90
2506 9485 5.009911 ACTGCACATTTTTATCAACAGCTCA 59.990 36.000 0.00 0.00 0.00 4.26
2507 9486 5.464168 ACTGCACATTTTTATCAACAGCTC 58.536 37.500 0.00 0.00 0.00 4.09
2508 9487 5.458041 ACTGCACATTTTTATCAACAGCT 57.542 34.783 0.00 0.00 0.00 4.24
2509 9488 5.691305 TGAACTGCACATTTTTATCAACAGC 59.309 36.000 0.00 0.00 0.00 4.40
2510 9489 7.697352 TTGAACTGCACATTTTTATCAACAG 57.303 32.000 0.00 0.00 0.00 3.16
2511 9490 8.549548 CATTTGAACTGCACATTTTTATCAACA 58.450 29.630 0.00 0.00 0.00 3.33
2512 9491 8.550376 ACATTTGAACTGCACATTTTTATCAAC 58.450 29.630 0.00 0.00 0.00 3.18
2513 9492 8.659925 ACATTTGAACTGCACATTTTTATCAA 57.340 26.923 0.00 0.00 0.00 2.57
2514 9493 8.659925 AACATTTGAACTGCACATTTTTATCA 57.340 26.923 0.00 0.00 0.00 2.15
2515 9494 8.981647 AGAACATTTGAACTGCACATTTTTATC 58.018 29.630 0.00 0.00 0.00 1.75
2516 9495 8.891671 AGAACATTTGAACTGCACATTTTTAT 57.108 26.923 0.00 0.00 0.00 1.40
2517 9496 9.809096 TTAGAACATTTGAACTGCACATTTTTA 57.191 25.926 0.00 0.00 0.00 1.52
2518 9497 8.715191 TTAGAACATTTGAACTGCACATTTTT 57.285 26.923 0.00 0.00 0.00 1.94
2519 9498 7.042523 GCTTAGAACATTTGAACTGCACATTTT 60.043 33.333 0.00 0.00 0.00 1.82
2520 9499 6.421801 GCTTAGAACATTTGAACTGCACATTT 59.578 34.615 0.00 0.00 0.00 2.32
2521 9500 5.922544 GCTTAGAACATTTGAACTGCACATT 59.077 36.000 0.00 0.00 0.00 2.71
2522 9501 5.009911 TGCTTAGAACATTTGAACTGCACAT 59.990 36.000 0.00 0.00 0.00 3.21
2523 9502 4.337836 TGCTTAGAACATTTGAACTGCACA 59.662 37.500 0.00 0.00 0.00 4.57
2524 9503 4.858935 TGCTTAGAACATTTGAACTGCAC 58.141 39.130 0.00 0.00 0.00 4.57
2525 9504 5.512753 TTGCTTAGAACATTTGAACTGCA 57.487 34.783 0.00 0.00 0.00 4.41
2526 9505 7.530010 TCTATTGCTTAGAACATTTGAACTGC 58.470 34.615 0.00 0.00 33.90 4.40
2527 9506 9.897744 TTTCTATTGCTTAGAACATTTGAACTG 57.102 29.630 8.61 0.00 44.71 3.16
2538 9517 9.847706 CGCTCTATAGATTTCTATTGCTTAGAA 57.152 33.333 2.11 5.82 43.63 2.10
2539 9518 9.232473 TCGCTCTATAGATTTCTATTGCTTAGA 57.768 33.333 2.11 2.19 39.66 2.10
2541 9520 9.794685 CATCGCTCTATAGATTTCTATTGCTTA 57.205 33.333 2.11 0.00 39.66 3.09
2542 9521 7.763528 CCATCGCTCTATAGATTTCTATTGCTT 59.236 37.037 2.11 0.00 39.66 3.91
2543 9522 7.123397 TCCATCGCTCTATAGATTTCTATTGCT 59.877 37.037 2.11 0.00 39.66 3.91
2544 9523 7.261325 TCCATCGCTCTATAGATTTCTATTGC 58.739 38.462 2.11 0.00 39.66 3.56
2545 9524 9.247126 CATCCATCGCTCTATAGATTTCTATTG 57.753 37.037 2.11 4.41 39.66 1.90
2546 9525 9.194972 TCATCCATCGCTCTATAGATTTCTATT 57.805 33.333 2.11 0.00 39.66 1.73
2547 9526 8.759481 TCATCCATCGCTCTATAGATTTCTAT 57.241 34.615 2.11 5.48 41.65 1.98
2548 9527 8.581253 TTCATCCATCGCTCTATAGATTTCTA 57.419 34.615 2.11 0.00 0.00 2.10
2549 9528 7.473735 TTCATCCATCGCTCTATAGATTTCT 57.526 36.000 2.11 0.00 0.00 2.52
2550 9529 8.602328 CAATTCATCCATCGCTCTATAGATTTC 58.398 37.037 2.11 0.00 0.00 2.17
2551 9530 8.316946 TCAATTCATCCATCGCTCTATAGATTT 58.683 33.333 2.11 0.00 0.00 2.17
2552 9531 7.845037 TCAATTCATCCATCGCTCTATAGATT 58.155 34.615 2.11 0.00 0.00 2.40
2553 9532 7.123997 ACTCAATTCATCCATCGCTCTATAGAT 59.876 37.037 2.11 0.00 0.00 1.98
2554 9533 6.435591 ACTCAATTCATCCATCGCTCTATAGA 59.564 38.462 1.69 1.69 0.00 1.98
2555 9534 6.629128 ACTCAATTCATCCATCGCTCTATAG 58.371 40.000 0.00 0.00 0.00 1.31
2556 9535 6.596309 ACTCAATTCATCCATCGCTCTATA 57.404 37.500 0.00 0.00 0.00 1.31
2557 9536 5.480642 ACTCAATTCATCCATCGCTCTAT 57.519 39.130 0.00 0.00 0.00 1.98
2558 9537 4.944619 ACTCAATTCATCCATCGCTCTA 57.055 40.909 0.00 0.00 0.00 2.43
2559 9538 3.834489 ACTCAATTCATCCATCGCTCT 57.166 42.857 0.00 0.00 0.00 4.09
2560 9539 7.658179 TTAATACTCAATTCATCCATCGCTC 57.342 36.000 0.00 0.00 0.00 5.03
2561 9540 8.450578 TTTTAATACTCAATTCATCCATCGCT 57.549 30.769 0.00 0.00 0.00 4.93
2584 9563 6.321181 TGAAATCTGCACCAGTAAGACTTTTT 59.679 34.615 0.00 0.00 32.61 1.94
2585 9564 5.827797 TGAAATCTGCACCAGTAAGACTTTT 59.172 36.000 0.00 0.00 32.61 2.27
2586 9565 5.376625 TGAAATCTGCACCAGTAAGACTTT 58.623 37.500 0.00 0.00 32.61 2.66
2587 9566 4.973168 TGAAATCTGCACCAGTAAGACTT 58.027 39.130 0.00 0.00 32.61 3.01
2588 9567 4.623932 TGAAATCTGCACCAGTAAGACT 57.376 40.909 0.00 0.00 32.61 3.24
2589 9568 4.937620 TCATGAAATCTGCACCAGTAAGAC 59.062 41.667 0.00 0.00 32.61 3.01
2590 9569 5.046376 TCTCATGAAATCTGCACCAGTAAGA 60.046 40.000 0.00 0.00 32.61 2.10
2591 9570 5.181009 TCTCATGAAATCTGCACCAGTAAG 58.819 41.667 0.00 0.00 32.61 2.34
2592 9571 5.164620 TCTCATGAAATCTGCACCAGTAA 57.835 39.130 0.00 0.00 32.61 2.24
2593 9572 4.824479 TCTCATGAAATCTGCACCAGTA 57.176 40.909 0.00 0.00 32.61 2.74
2594 9573 3.708403 TCTCATGAAATCTGCACCAGT 57.292 42.857 0.00 0.00 32.61 4.00
2595 9574 4.008330 AGTTCTCATGAAATCTGCACCAG 58.992 43.478 0.00 0.00 33.52 4.00
2663 12339 5.279506 CCGACAGATGCCATACTAGGTTAAT 60.280 44.000 0.00 0.00 0.00 1.40
2719 12677 5.801947 CCAATAAGCTCTTGAATTTGGTTCG 59.198 40.000 9.86 0.00 39.80 3.95
2791 14674 1.911357 TGCTGAACAGAGGTGATCCAT 59.089 47.619 5.97 0.00 35.89 3.41
2812 14726 6.475402 GCTACTAAGCTCTTGAATCAAGTCTC 59.525 42.308 20.91 11.83 45.85 3.36
2839 14753 2.681848 GAGCTTCACGTACTGCCTACTA 59.318 50.000 0.00 0.00 0.00 1.82
2905 14857 2.996621 CAAGTTTCTAGCTCCCGTTCTG 59.003 50.000 0.00 0.00 0.00 3.02
2911 14863 0.744771 CCGCCAAGTTTCTAGCTCCC 60.745 60.000 0.00 0.00 0.00 4.30
2914 14866 2.789409 ATTCCGCCAAGTTTCTAGCT 57.211 45.000 0.00 0.00 0.00 3.32
2949 14901 4.074259 TGTTGGTCCTGATTCTTGTCATG 58.926 43.478 0.00 0.00 0.00 3.07
2957 14909 2.783135 TCTTGCTGTTGGTCCTGATTC 58.217 47.619 0.00 0.00 0.00 2.52
3041 15049 2.224378 CCACGGGATGAGAGCATGTAAT 60.224 50.000 0.00 0.00 34.11 1.89
3042 15050 1.138859 CCACGGGATGAGAGCATGTAA 59.861 52.381 0.00 0.00 34.11 2.41
3055 15063 2.203523 TCTCGAACCACCACGGGA 60.204 61.111 0.00 0.00 40.22 5.14
3085 15093 0.530288 CAACCGGCAAAACCCCTATG 59.470 55.000 0.00 0.00 33.26 2.23
3086 15094 1.254975 GCAACCGGCAAAACCCCTAT 61.255 55.000 0.00 0.00 43.97 2.57
3146 15156 2.286872 GATGACTGATGACAAGGGCTG 58.713 52.381 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.