Multiple sequence alignment - TraesCS4B01G258000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G258000 chr4B 100.000 6868 0 0 544 7411 524011321 524004454 0.000000e+00 12683.0
1 TraesCS4B01G258000 chr4B 100.000 325 0 0 1 325 524011864 524011540 1.060000e-167 601.0
2 TraesCS4B01G258000 chr4B 95.238 168 8 0 7242 7409 523951903 523952070 4.410000e-67 267.0
3 TraesCS4B01G258000 chr4D 98.055 2879 52 2 1940 4816 427930808 427927932 0.000000e+00 5003.0
4 TraesCS4B01G258000 chr4D 95.753 2166 57 16 4841 6983 427927852 427925699 0.000000e+00 3458.0
5 TraesCS4B01G258000 chr4D 86.786 1226 53 48 554 1730 427932085 427930920 0.000000e+00 1266.0
6 TraesCS4B01G258000 chr4D 94.094 254 9 3 6994 7244 427925128 427924878 1.510000e-101 381.0
7 TraesCS4B01G258000 chr4D 92.941 170 12 0 7242 7411 406228358 406228189 1.600000e-61 248.0
8 TraesCS4B01G258000 chr4D 81.119 286 28 10 40 325 427932457 427932198 9.750000e-49 206.0
9 TraesCS4B01G258000 chr4D 95.588 68 2 1 1752 1818 427930926 427930859 2.830000e-19 108.0
10 TraesCS4B01G258000 chr4D 98.333 60 1 0 1846 1905 427930875 427930816 1.020000e-18 106.0
11 TraesCS4B01G258000 chr4A 96.495 2625 73 5 2195 4816 38364885 38367493 0.000000e+00 4320.0
12 TraesCS4B01G258000 chr4A 91.117 1880 107 29 4841 6710 38367570 38369399 0.000000e+00 2492.0
13 TraesCS4B01G258000 chr4A 89.967 598 34 14 1233 1818 38363377 38363960 0.000000e+00 749.0
14 TraesCS4B01G258000 chr4A 83.564 651 37 26 545 1185 38362653 38363243 5.060000e-151 545.0
15 TraesCS4B01G258000 chr4A 84.647 482 36 19 6779 7241 38369443 38369905 5.280000e-121 446.0
16 TraesCS4B01G258000 chr4A 98.305 59 1 0 1846 1904 38363944 38364002 3.660000e-18 104.0
17 TraesCS4B01G258000 chr4A 82.407 108 10 4 2033 2139 38364583 38364682 1.320000e-12 86.1
18 TraesCS4B01G258000 chr4A 87.931 58 6 1 268 325 38362533 38362589 4.800000e-07 67.6
19 TraesCS4B01G258000 chr4A 97.143 35 1 0 1235 1269 38363338 38363372 8.030000e-05 60.2
20 TraesCS4B01G258000 chr2B 93.529 170 10 1 7242 7411 674307676 674307844 1.230000e-62 252.0
21 TraesCS4B01G258000 chr2B 82.759 87 14 1 14 100 393022615 393022700 7.970000e-10 76.8
22 TraesCS4B01G258000 chr2B 88.679 53 5 1 13 64 775105169 775105221 6.210000e-06 63.9
23 TraesCS4B01G258000 chr7B 92.941 170 12 0 7242 7411 500735792 500735961 1.600000e-61 248.0
24 TraesCS4B01G258000 chr7D 92.353 170 13 0 7242 7411 230444442 230444273 7.430000e-60 243.0
25 TraesCS4B01G258000 chr5A 91.813 171 14 0 7241 7411 540404093 540403923 9.610000e-59 239.0
26 TraesCS4B01G258000 chr5D 91.765 170 14 0 7242 7411 552404994 552404825 3.460000e-58 237.0
27 TraesCS4B01G258000 chr5D 91.228 171 15 0 7241 7411 417763025 417763195 4.470000e-57 233.0
28 TraesCS4B01G258000 chr5D 84.358 179 28 0 1001 1179 80704069 80703891 7.640000e-40 176.0
29 TraesCS4B01G258000 chr3D 91.765 170 14 0 7242 7411 2387258 2387427 3.460000e-58 237.0
30 TraesCS4B01G258000 chr2D 83.333 102 17 0 24 125 644392272 644392373 2.200000e-15 95.3
31 TraesCS4B01G258000 chr3A 94.643 56 3 0 24 79 659972643 659972698 3.680000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G258000 chr4B 524004454 524011864 7410 True 6642.000000 12683 100.000000 1 7411 2 chr4B.!!$R1 7410
1 TraesCS4B01G258000 chr4D 427924878 427932457 7579 True 1504.000000 5003 92.818286 40 7244 7 chr4D.!!$R2 7204
2 TraesCS4B01G258000 chr4A 38362533 38369905 7372 False 985.544444 4320 90.175111 268 7241 9 chr4A.!!$F1 6973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 282 0.036010 CTCCATGGAAAGCACCGTCT 60.036 55.000 17.00 0.0 0.00 4.18 F
950 1001 0.179029 GAGACGAGGAGGAGGAGGAG 60.179 65.000 0.00 0.0 0.00 3.69 F
1559 1718 0.040425 GTTCGCCGCATCTGTTTGTT 60.040 50.000 0.00 0.0 0.00 2.83 F
2448 3261 1.302832 CACAGGTCTTGCTCCCCAC 60.303 63.158 0.00 0.0 0.00 4.61 F
2931 3744 1.188219 AGATCACGGTGCAGGTCACT 61.188 55.000 2.51 0.0 44.98 3.41 F
3810 4623 1.674962 GCAGCAATTCTAGAGCTTGGG 59.325 52.381 15.15 2.9 36.26 4.12 F
4311 5124 1.340889 TGTGGCATTTTGACTGAAGGC 59.659 47.619 0.00 0.0 33.40 4.35 F
5836 6711 4.394729 TGCCAGGTAATTCGAAGTTTCTT 58.605 39.130 2.37 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1240 1351 1.000955 TCTCCGTTCCAGAGTTCTTGC 59.999 52.381 0.00 0.0 32.93 4.01 R
2472 3285 1.153289 ATAGCCTGCTGCCTTGACG 60.153 57.895 0.97 0.0 42.71 4.35 R
2814 3627 1.954382 AGAATACTAGCGACGATGCCA 59.046 47.619 0.00 0.0 34.65 4.92 R
3810 4623 0.247736 AATCTCCACCGAGTGACAGC 59.752 55.000 5.71 0.0 37.40 4.40 R
3867 4680 0.248012 TCGCGGAGTTAAATGGCTCA 59.752 50.000 6.13 0.0 33.66 4.26 R
5180 6053 4.074647 GCTGGTGGCGTAAAACCT 57.925 55.556 0.00 0.0 37.36 3.50 R
6222 7099 0.247379 GCGACGAACACGTTGTTGTT 60.247 50.000 0.00 0.0 41.28 2.83 R
6954 7866 0.179048 CACCCACACTGTTCTGCTCA 60.179 55.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.982356 CTGACTCCAATAAGTGAGGAATGA 58.018 41.667 0.00 0.00 32.80 2.57
25 26 6.566079 TGACTCCAATAAGTGAGGAATGAT 57.434 37.500 0.00 0.00 32.80 2.45
26 27 6.351711 TGACTCCAATAAGTGAGGAATGATG 58.648 40.000 0.00 0.00 32.80 3.07
27 28 6.156775 TGACTCCAATAAGTGAGGAATGATGA 59.843 38.462 0.00 0.00 32.80 2.92
28 29 6.352516 ACTCCAATAAGTGAGGAATGATGAC 58.647 40.000 0.00 0.00 32.80 3.06
29 30 6.070021 ACTCCAATAAGTGAGGAATGATGACA 60.070 38.462 0.00 0.00 32.80 3.58
30 31 6.351711 TCCAATAAGTGAGGAATGATGACAG 58.648 40.000 0.00 0.00 0.00 3.51
31 32 5.008415 CCAATAAGTGAGGAATGATGACAGC 59.992 44.000 0.00 0.00 0.00 4.40
32 33 2.306341 AGTGAGGAATGATGACAGCG 57.694 50.000 0.00 0.00 0.00 5.18
33 34 1.134580 AGTGAGGAATGATGACAGCGG 60.135 52.381 0.00 0.00 0.00 5.52
34 35 0.462581 TGAGGAATGATGACAGCGGC 60.463 55.000 0.00 0.00 0.00 6.53
35 36 1.493950 GAGGAATGATGACAGCGGCG 61.494 60.000 0.51 0.51 0.00 6.46
36 37 1.815421 GGAATGATGACAGCGGCGT 60.815 57.895 9.37 0.00 0.00 5.68
37 38 1.349627 GAATGATGACAGCGGCGTG 59.650 57.895 9.37 8.36 0.00 5.34
38 39 2.637715 GAATGATGACAGCGGCGTGC 62.638 60.000 9.37 3.31 46.98 5.34
63 64 1.472376 GGCTAGCTCCAGTGCTTGTAG 60.472 57.143 15.72 0.00 43.74 2.74
82 83 0.179081 GCCCTCGCTAGGTGGTTTAG 60.179 60.000 3.23 0.00 41.89 1.85
83 84 1.481871 CCCTCGCTAGGTGGTTTAGA 58.518 55.000 3.23 0.00 41.89 2.10
95 96 6.636454 AGGTGGTTTAGAGACATGGATTTA 57.364 37.500 0.00 0.00 0.00 1.40
96 97 7.027874 AGGTGGTTTAGAGACATGGATTTAA 57.972 36.000 0.00 0.00 0.00 1.52
99 100 8.749354 GGTGGTTTAGAGACATGGATTTAATTT 58.251 33.333 0.00 0.00 0.00 1.82
100 101 9.788960 GTGGTTTAGAGACATGGATTTAATTTC 57.211 33.333 0.00 0.00 0.00 2.17
101 102 9.753674 TGGTTTAGAGACATGGATTTAATTTCT 57.246 29.630 0.00 0.00 0.00 2.52
131 132 8.991243 ATTTTCATGTTCTTTGTACCATCATG 57.009 30.769 0.00 0.00 34.46 3.07
132 133 7.757941 TTTCATGTTCTTTGTACCATCATGA 57.242 32.000 0.00 0.00 38.48 3.07
133 134 7.943079 TTCATGTTCTTTGTACCATCATGAT 57.057 32.000 1.18 1.18 39.44 2.45
134 135 7.324354 TCATGTTCTTTGTACCATCATGATG 57.676 36.000 25.97 25.97 36.41 3.07
135 136 6.885918 TCATGTTCTTTGTACCATCATGATGT 59.114 34.615 29.23 20.57 36.41 3.06
163 164 9.719355 TGATGAATAAATATAGTACATTGGCGT 57.281 29.630 0.00 0.00 0.00 5.68
222 223 6.421377 AATTGTTTTGTGAAAAGCAGAACC 57.579 33.333 0.00 0.00 32.20 3.62
225 226 4.219507 TGTTTTGTGAAAAGCAGAACCTGA 59.780 37.500 0.00 0.00 32.20 3.86
236 237 0.108585 AGAACCTGAACACCATGCGT 59.891 50.000 0.00 0.00 0.00 5.24
246 247 1.003839 ACCATGCGTGTCGTTCCAT 60.004 52.632 4.96 0.00 0.00 3.41
247 248 0.605319 ACCATGCGTGTCGTTCCATT 60.605 50.000 4.96 0.00 0.00 3.16
248 249 0.096976 CCATGCGTGTCGTTCCATTC 59.903 55.000 4.96 0.00 0.00 2.67
249 250 0.096976 CATGCGTGTCGTTCCATTCC 59.903 55.000 0.00 0.00 0.00 3.01
250 251 0.321210 ATGCGTGTCGTTCCATTCCA 60.321 50.000 0.00 0.00 0.00 3.53
266 267 1.208706 TCCACCACAAACTCACTCCA 58.791 50.000 0.00 0.00 0.00 3.86
271 272 2.174639 ACCACAAACTCACTCCATGGAA 59.825 45.455 17.00 0.00 0.00 3.53
277 278 1.271597 ACTCACTCCATGGAAAGCACC 60.272 52.381 17.00 0.00 0.00 5.01
281 282 0.036010 CTCCATGGAAAGCACCGTCT 60.036 55.000 17.00 0.00 0.00 4.18
283 284 0.036010 CCATGGAAAGCACCGTCTCT 60.036 55.000 5.56 0.00 0.00 3.10
288 289 1.140816 GAAAGCACCGTCTCTGTCAC 58.859 55.000 0.00 0.00 0.00 3.67
586 591 0.253327 GAATCCACGCTCCTTTCCCT 59.747 55.000 0.00 0.00 0.00 4.20
600 605 3.255888 CCTTTCCCTAAACCAGAGCAAAC 59.744 47.826 0.00 0.00 0.00 2.93
601 606 2.579410 TCCCTAAACCAGAGCAAACC 57.421 50.000 0.00 0.00 0.00 3.27
602 607 1.777878 TCCCTAAACCAGAGCAAACCA 59.222 47.619 0.00 0.00 0.00 3.67
603 608 2.175931 TCCCTAAACCAGAGCAAACCAA 59.824 45.455 0.00 0.00 0.00 3.67
604 609 2.558359 CCCTAAACCAGAGCAAACCAAG 59.442 50.000 0.00 0.00 0.00 3.61
605 610 2.558359 CCTAAACCAGAGCAAACCAAGG 59.442 50.000 0.00 0.00 0.00 3.61
606 611 2.452600 AAACCAGAGCAAACCAAGGA 57.547 45.000 0.00 0.00 0.00 3.36
607 612 2.452600 AACCAGAGCAAACCAAGGAA 57.547 45.000 0.00 0.00 0.00 3.36
705 723 1.143305 CGCTCGGATCCATCAATCAC 58.857 55.000 13.41 0.00 0.00 3.06
744 768 2.450476 GCCACCTTCCATGAAATCAGT 58.550 47.619 0.00 0.00 0.00 3.41
766 790 1.295020 CCCCCAAGGACAGAATACCA 58.705 55.000 0.00 0.00 38.24 3.25
789 813 2.285220 CACTTCCATGAAAGTATCGCCG 59.715 50.000 0.00 0.00 37.38 6.46
790 814 1.867233 CTTCCATGAAAGTATCGCCGG 59.133 52.381 0.00 0.00 0.00 6.13
802 826 4.124351 CGCCGGTCGAGGTAGCAA 62.124 66.667 12.11 0.00 41.67 3.91
900 951 1.469940 GCCGCGTGCTGCTATATAGAT 60.470 52.381 14.16 0.00 43.27 1.98
921 972 3.637273 GCGGAGTTGGTGGGGAGT 61.637 66.667 0.00 0.00 0.00 3.85
926 977 2.856988 GTTGGTGGGGAGTGGGGA 60.857 66.667 0.00 0.00 0.00 4.81
929 980 4.048470 GGTGGGGAGTGGGGAAGC 62.048 72.222 0.00 0.00 0.00 3.86
930 981 3.256960 GTGGGGAGTGGGGAAGCA 61.257 66.667 0.00 0.00 0.00 3.91
931 982 2.935481 TGGGGAGTGGGGAAGCAG 60.935 66.667 0.00 0.00 0.00 4.24
932 983 2.610859 GGGGAGTGGGGAAGCAGA 60.611 66.667 0.00 0.00 0.00 4.26
935 986 1.599576 GGAGTGGGGAAGCAGAGAC 59.400 63.158 0.00 0.00 0.00 3.36
936 987 1.216710 GAGTGGGGAAGCAGAGACG 59.783 63.158 0.00 0.00 0.00 4.18
937 988 1.228894 AGTGGGGAAGCAGAGACGA 60.229 57.895 0.00 0.00 0.00 4.20
940 991 1.682684 GGGGAAGCAGAGACGAGGA 60.683 63.158 0.00 0.00 0.00 3.71
941 992 1.671901 GGGGAAGCAGAGACGAGGAG 61.672 65.000 0.00 0.00 0.00 3.69
942 993 1.671901 GGGAAGCAGAGACGAGGAGG 61.672 65.000 0.00 0.00 0.00 4.30
943 994 0.681564 GGAAGCAGAGACGAGGAGGA 60.682 60.000 0.00 0.00 0.00 3.71
944 995 0.738389 GAAGCAGAGACGAGGAGGAG 59.262 60.000 0.00 0.00 0.00 3.69
945 996 0.682855 AAGCAGAGACGAGGAGGAGG 60.683 60.000 0.00 0.00 0.00 4.30
946 997 1.077357 GCAGAGACGAGGAGGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
949 1000 0.622154 AGAGACGAGGAGGAGGAGGA 60.622 60.000 0.00 0.00 0.00 3.71
950 1001 0.179029 GAGACGAGGAGGAGGAGGAG 60.179 65.000 0.00 0.00 0.00 3.69
957 1008 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
959 1010 2.612251 GAGGAGGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
964 1015 4.890306 GGAGGAGGAGGGGAGGGC 62.890 77.778 0.00 0.00 0.00 5.19
986 1037 1.898472 TCTTTGACAGGGAGAGCAGAG 59.102 52.381 0.00 0.00 0.00 3.35
987 1038 0.322975 TTTGACAGGGAGAGCAGAGC 59.677 55.000 0.00 0.00 0.00 4.09
988 1039 0.833409 TTGACAGGGAGAGCAGAGCA 60.833 55.000 0.00 0.00 0.00 4.26
992 1043 0.683828 CAGGGAGAGCAGAGCAGAGA 60.684 60.000 0.00 0.00 0.00 3.10
1226 1293 3.380393 TCCCACCTCGATTTCCATCTAA 58.620 45.455 0.00 0.00 0.00 2.10
1227 1294 3.778075 TCCCACCTCGATTTCCATCTAAA 59.222 43.478 0.00 0.00 0.00 1.85
1361 1515 2.027460 CCTTTGGTTGGCACGCAC 59.973 61.111 0.00 0.00 0.00 5.34
1454 1611 2.570442 TCGTCCCAAAAAGCAAACAC 57.430 45.000 0.00 0.00 0.00 3.32
1475 1632 3.961408 ACTAGTTAGGCCATGACAGTAGG 59.039 47.826 5.01 0.00 0.00 3.18
1545 1704 3.764885 AATGCACCTCTAATTGTTCGC 57.235 42.857 0.00 0.00 0.00 4.70
1558 1717 1.163420 TGTTCGCCGCATCTGTTTGT 61.163 50.000 0.00 0.00 0.00 2.83
1559 1718 0.040425 GTTCGCCGCATCTGTTTGTT 60.040 50.000 0.00 0.00 0.00 2.83
1561 1720 1.514003 TCGCCGCATCTGTTTGTTAA 58.486 45.000 0.00 0.00 0.00 2.01
1566 1725 3.667960 GCCGCATCTGTTTGTTAAGAGTG 60.668 47.826 0.00 0.00 0.00 3.51
1567 1726 3.745975 CCGCATCTGTTTGTTAAGAGTGA 59.254 43.478 0.00 0.00 0.00 3.41
1568 1727 4.143030 CCGCATCTGTTTGTTAAGAGTGAG 60.143 45.833 0.00 0.00 0.00 3.51
1569 1728 4.449068 CGCATCTGTTTGTTAAGAGTGAGT 59.551 41.667 0.00 0.00 0.00 3.41
1570 1729 5.388890 CGCATCTGTTTGTTAAGAGTGAGTC 60.389 44.000 0.00 0.00 0.00 3.36
1571 1730 5.698545 GCATCTGTTTGTTAAGAGTGAGTCT 59.301 40.000 0.00 0.00 36.94 3.24
1572 1731 6.347240 GCATCTGTTTGTTAAGAGTGAGTCTG 60.347 42.308 0.00 0.00 34.84 3.51
1573 1732 6.222038 TCTGTTTGTTAAGAGTGAGTCTGT 57.778 37.500 0.00 0.00 34.84 3.41
1574 1733 7.342769 TCTGTTTGTTAAGAGTGAGTCTGTA 57.657 36.000 0.00 0.00 34.84 2.74
1575 1734 7.778083 TCTGTTTGTTAAGAGTGAGTCTGTAA 58.222 34.615 0.00 0.00 34.84 2.41
1576 1735 8.421784 TCTGTTTGTTAAGAGTGAGTCTGTAAT 58.578 33.333 0.00 0.00 34.84 1.89
1662 1821 6.731292 AAAGTTTCAGAATAGGCCTTGTTT 57.269 33.333 12.58 2.12 0.00 2.83
1726 1891 7.924412 CCGAAAGTTACTATTCCTGCACTATAA 59.076 37.037 0.00 0.00 0.00 0.98
1727 1892 8.753175 CGAAAGTTACTATTCCTGCACTATAAC 58.247 37.037 0.00 0.00 0.00 1.89
1728 1893 9.819267 GAAAGTTACTATTCCTGCACTATAACT 57.181 33.333 0.00 0.00 34.04 2.24
1771 1937 7.168637 GCATATCAAACTTGCCATAGTTGATTG 59.831 37.037 2.84 3.65 38.33 2.67
1817 1984 5.458595 TCAGATGAATGAAGTAGGCCTAGA 58.541 41.667 14.38 0.00 0.00 2.43
1818 1985 6.080682 TCAGATGAATGAAGTAGGCCTAGAT 58.919 40.000 14.38 4.59 0.00 1.98
1819 1986 6.556495 TCAGATGAATGAAGTAGGCCTAGATT 59.444 38.462 14.38 11.46 0.00 2.40
1820 1987 6.873076 CAGATGAATGAAGTAGGCCTAGATTC 59.127 42.308 22.67 22.67 0.00 2.52
1821 1988 6.786959 AGATGAATGAAGTAGGCCTAGATTCT 59.213 38.462 26.64 14.57 0.00 2.40
1822 1989 6.412362 TGAATGAAGTAGGCCTAGATTCTC 57.588 41.667 26.64 20.33 0.00 2.87
1823 1990 5.899547 TGAATGAAGTAGGCCTAGATTCTCA 59.100 40.000 26.64 21.89 0.00 3.27
1824 1991 6.384015 TGAATGAAGTAGGCCTAGATTCTCAA 59.616 38.462 26.64 14.69 0.00 3.02
1825 1992 6.814954 ATGAAGTAGGCCTAGATTCTCAAA 57.185 37.500 26.64 14.43 0.00 2.69
1826 1993 6.620877 TGAAGTAGGCCTAGATTCTCAAAA 57.379 37.500 26.64 12.14 0.00 2.44
1827 1994 7.016153 TGAAGTAGGCCTAGATTCTCAAAAA 57.984 36.000 26.64 11.62 0.00 1.94
1905 2072 1.403647 CGTGACGTGGATGCTCCTAAA 60.404 52.381 0.00 0.00 37.46 1.85
1906 2073 2.695359 GTGACGTGGATGCTCCTAAAA 58.305 47.619 0.00 0.00 37.46 1.52
1907 2074 3.071479 GTGACGTGGATGCTCCTAAAAA 58.929 45.455 0.00 0.00 37.46 1.94
1930 2097 8.434589 AAAAGGGAATCTCCATTAAAACATCA 57.565 30.769 0.00 0.00 39.99 3.07
1931 2098 8.613922 AAAGGGAATCTCCATTAAAACATCAT 57.386 30.769 0.00 0.00 39.99 2.45
1932 2099 8.613922 AAGGGAATCTCCATTAAAACATCATT 57.386 30.769 0.00 0.00 38.98 2.57
1933 2100 9.713684 AAGGGAATCTCCATTAAAACATCATTA 57.286 29.630 0.00 0.00 38.98 1.90
1934 2101 9.887862 AGGGAATCTCCATTAAAACATCATTAT 57.112 29.630 0.00 0.00 38.64 1.28
1935 2102 9.918630 GGGAATCTCCATTAAAACATCATTATG 57.081 33.333 0.00 0.00 38.64 1.90
1936 2103 9.918630 GGAATCTCCATTAAAACATCATTATGG 57.081 33.333 0.00 0.00 35.40 2.74
1946 2113 6.736110 AAACATCATTATGGAATTCCCCTG 57.264 37.500 21.90 12.95 37.43 4.45
1948 2115 6.223574 ACATCATTATGGAATTCCCCTGAT 57.776 37.500 21.90 18.54 37.43 2.90
1970 2137 7.461749 TGATAAAGGGAATCTCCATTATGGAC 58.538 38.462 10.29 0.26 39.99 4.02
2134 2783 7.441017 CCCTTCAATAAACAAGTGGATTCAAA 58.559 34.615 0.00 0.00 0.00 2.69
2208 3021 9.003658 GGTGCTTTTTACTACATCTATATGCAT 57.996 33.333 3.79 3.79 36.50 3.96
2360 3173 5.038962 TGATGATACCAGGGCATACCATAT 58.961 41.667 0.00 0.00 43.89 1.78
2408 3221 4.393834 TCCTTCTGGATCTCTATCAGTCG 58.606 47.826 0.00 0.00 37.46 4.18
2419 3232 4.750598 TCTCTATCAGTCGATCTTACCACG 59.249 45.833 0.00 0.00 32.73 4.94
2448 3261 1.302832 CACAGGTCTTGCTCCCCAC 60.303 63.158 0.00 0.00 0.00 4.61
2472 3285 3.702048 TACACAGTCCCTGCCGCC 61.702 66.667 0.00 0.00 34.37 6.13
2931 3744 1.188219 AGATCACGGTGCAGGTCACT 61.188 55.000 2.51 0.00 44.98 3.41
3686 4499 2.864489 GCTTATTCTCTGAGCTACCGGC 60.864 54.545 0.00 0.00 42.19 6.13
3729 4542 4.393680 TCGCAGTCCATATTTAACAACACC 59.606 41.667 0.00 0.00 0.00 4.16
3810 4623 1.674962 GCAGCAATTCTAGAGCTTGGG 59.325 52.381 15.15 2.90 36.26 4.12
3867 4680 1.963515 GCAACCACCCTCATCAAAGTT 59.036 47.619 0.00 0.00 0.00 2.66
3882 4695 5.705609 TCAAAGTTGAGCCATTTAACTCC 57.294 39.130 0.00 0.00 33.82 3.85
3993 4806 2.426522 TGCAGCAAGTACCTGAATGAC 58.573 47.619 0.00 0.00 32.03 3.06
4019 4832 2.764637 AATGCCGTCCCCCTTGACAC 62.765 60.000 0.00 0.00 34.88 3.67
4131 4944 2.239402 TGGGTTCTCAGCTAATGATGCA 59.761 45.455 0.00 0.00 37.28 3.96
4311 5124 1.340889 TGTGGCATTTTGACTGAAGGC 59.659 47.619 0.00 0.00 33.40 4.35
4365 5178 8.317679 AGAACTAAGAGTGCAGAAGAAATGTAT 58.682 33.333 0.00 0.00 0.00 2.29
4405 5218 8.705594 AGATACAGGTATGTTTACTGCTATTGT 58.294 33.333 0.00 0.00 41.01 2.71
4821 5670 8.374327 TGATCTATCATTATGTCACTTTGCAG 57.626 34.615 0.00 0.00 0.00 4.41
5180 6053 8.421249 AATCAGTTCATTTGATTAAAGGGACA 57.579 30.769 8.53 0.00 41.99 4.02
5281 6156 9.350951 GTATATTACCTTTAGGGCTGTTTCATT 57.649 33.333 0.10 0.00 40.27 2.57
5295 6170 7.420800 GGCTGTTTCATTCTCCAGTTATTATG 58.579 38.462 0.00 0.00 0.00 1.90
5432 6307 8.496916 AGGTTATTACACCCGGAAATTAGTATT 58.503 33.333 0.73 0.00 37.58 1.89
5433 6308 9.777297 GGTTATTACACCCGGAAATTAGTATTA 57.223 33.333 0.73 0.00 0.00 0.98
5732 6607 5.794687 TTGTAATTTGGTATCTGCAGACG 57.205 39.130 20.97 0.00 0.00 4.18
5836 6711 4.394729 TGCCAGGTAATTCGAAGTTTCTT 58.605 39.130 2.37 0.00 0.00 2.52
5861 6736 4.622313 TGCATTCATTTGATTTCTGCGAAC 59.378 37.500 0.00 0.00 0.00 3.95
6048 6924 7.101652 TGGCAAAGTATGAACACTTAACAAA 57.898 32.000 0.00 0.00 37.78 2.83
6084 6961 9.916397 CTGACGACTTCATTACCAAATAATAAC 57.084 33.333 0.00 0.00 31.88 1.89
6132 7009 5.048846 AGTTTTTCTGGGTGATAGTGTGT 57.951 39.130 0.00 0.00 0.00 3.72
6573 7453 6.044682 GGTGAATTGAATCTATGGCCTTTTG 58.955 40.000 3.32 0.00 0.00 2.44
6734 7641 7.304497 ACCTAAAGTACTTGAGACATCTGTT 57.696 36.000 20.15 0.00 0.00 3.16
6741 7648 8.682936 AGTACTTGAGACATCTGTTTTGATTT 57.317 30.769 0.00 0.00 0.00 2.17
6767 7674 2.288948 TGATGTTTGGATTGGCTTGTGC 60.289 45.455 0.00 0.00 38.76 4.57
6768 7675 1.117994 TGTTTGGATTGGCTTGTGCA 58.882 45.000 0.00 0.00 41.91 4.57
6777 7684 4.022849 GGATTGGCTTGTGCATATAAGGTC 60.023 45.833 0.00 0.00 41.91 3.85
6779 7686 4.235079 TGGCTTGTGCATATAAGGTCTT 57.765 40.909 0.00 0.00 41.91 3.01
6795 7702 4.226384 AGGTCTTCCTTTTGCCATCTTTT 58.774 39.130 0.00 0.00 42.12 2.27
6796 7703 4.039609 AGGTCTTCCTTTTGCCATCTTTTG 59.960 41.667 0.00 0.00 42.12 2.44
6797 7704 4.202253 GGTCTTCCTTTTGCCATCTTTTGT 60.202 41.667 0.00 0.00 0.00 2.83
6798 7705 5.010617 GGTCTTCCTTTTGCCATCTTTTGTA 59.989 40.000 0.00 0.00 0.00 2.41
6800 7707 4.864704 TCCTTTTGCCATCTTTTGTACC 57.135 40.909 0.00 0.00 0.00 3.34
6805 7712 7.070074 TCCTTTTGCCATCTTTTGTACCTTTTA 59.930 33.333 0.00 0.00 0.00 1.52
6835 7745 4.038642 AGTGCCAGAAATTTAGCCGAAAAA 59.961 37.500 0.00 0.00 0.00 1.94
6852 7762 9.487790 AGCCGAAAAATTGATAAAAGATTTCAA 57.512 25.926 0.00 0.00 34.18 2.69
6949 7861 1.207570 GCAATCCAAATGCCACCATCA 59.792 47.619 0.00 0.00 37.85 3.07
6950 7862 2.740580 GCAATCCAAATGCCACCATCAG 60.741 50.000 0.00 0.00 37.85 2.90
6951 7863 1.117150 ATCCAAATGCCACCATCAGC 58.883 50.000 0.00 0.00 0.00 4.26
6957 7869 2.876581 TGCCACCATCAGCATTGAG 58.123 52.632 0.00 0.00 36.61 3.02
7020 8500 0.104671 GCAGTTGGCTTCTTTTGGCA 59.895 50.000 0.00 0.00 40.25 4.92
7058 8538 0.943835 TCACAGGCGATTGACACACG 60.944 55.000 0.00 0.00 0.00 4.49
7079 8559 1.246056 GCAGCTTGCTTCCATCACCA 61.246 55.000 0.00 0.00 40.96 4.17
7146 8626 0.670239 CATCGTGTGCTACCACTGCA 60.670 55.000 0.00 0.00 42.54 4.41
7147 8627 0.390340 ATCGTGTGCTACCACTGCAG 60.390 55.000 13.48 13.48 42.54 4.41
7153 8633 1.000955 GTGCTACCACTGCAGTGTACT 59.999 52.381 37.55 24.45 44.21 2.73
7166 8646 3.741344 GCAGTGTACTACAACAACTCCTG 59.259 47.826 0.00 0.00 0.00 3.86
7241 8727 1.210931 CCAACAGCGTCAGCCAATG 59.789 57.895 0.00 0.00 46.67 2.82
7259 8745 6.838198 CCAATGGCAGAAATCACATATTTG 57.162 37.500 0.00 0.00 0.00 2.32
7260 8746 6.575267 CCAATGGCAGAAATCACATATTTGA 58.425 36.000 0.00 0.00 0.00 2.69
7261 8747 6.477688 CCAATGGCAGAAATCACATATTTGAC 59.522 38.462 0.00 0.00 0.00 3.18
7262 8748 5.581126 TGGCAGAAATCACATATTTGACC 57.419 39.130 0.00 0.00 0.00 4.02
7263 8749 5.263599 TGGCAGAAATCACATATTTGACCT 58.736 37.500 0.00 0.00 0.00 3.85
7264 8750 5.125900 TGGCAGAAATCACATATTTGACCTG 59.874 40.000 10.82 10.82 0.00 4.00
7265 8751 5.357878 GGCAGAAATCACATATTTGACCTGA 59.642 40.000 15.94 0.00 0.00 3.86
7266 8752 6.127647 GGCAGAAATCACATATTTGACCTGAA 60.128 38.462 15.94 0.00 0.00 3.02
7267 8753 6.971184 GCAGAAATCACATATTTGACCTGAAG 59.029 38.462 15.94 0.83 0.00 3.02
7268 8754 7.478322 CAGAAATCACATATTTGACCTGAAGG 58.522 38.462 10.09 0.00 42.17 3.46
7269 8755 5.841957 AATCACATATTTGACCTGAAGGC 57.158 39.130 0.00 0.00 39.32 4.35
7270 8756 4.299586 TCACATATTTGACCTGAAGGCA 57.700 40.909 0.00 0.00 39.32 4.75
7271 8757 4.661222 TCACATATTTGACCTGAAGGCAA 58.339 39.130 0.00 0.00 39.32 4.52
7272 8758 5.076182 TCACATATTTGACCTGAAGGCAAA 58.924 37.500 16.16 16.16 41.62 3.68
7273 8759 5.538053 TCACATATTTGACCTGAAGGCAAAA 59.462 36.000 17.15 9.94 41.16 2.44
7274 8760 6.211184 TCACATATTTGACCTGAAGGCAAAAT 59.789 34.615 17.15 14.68 41.16 1.82
7275 8761 6.532657 CACATATTTGACCTGAAGGCAAAATC 59.467 38.462 17.15 1.41 41.16 2.17
7276 8762 6.211184 ACATATTTGACCTGAAGGCAAAATCA 59.789 34.615 17.15 3.62 41.16 2.57
7277 8763 5.549742 ATTTGACCTGAAGGCAAAATCAA 57.450 34.783 17.15 8.44 41.16 2.57
7278 8764 5.350504 TTTGACCTGAAGGCAAAATCAAA 57.649 34.783 13.22 10.50 37.85 2.69
7279 8765 5.549742 TTGACCTGAAGGCAAAATCAAAT 57.450 34.783 0.00 0.00 39.32 2.32
7280 8766 5.138125 TGACCTGAAGGCAAAATCAAATC 57.862 39.130 0.00 0.00 39.32 2.17
7281 8767 4.588106 TGACCTGAAGGCAAAATCAAATCA 59.412 37.500 0.00 0.00 39.32 2.57
7282 8768 4.886579 ACCTGAAGGCAAAATCAAATCAC 58.113 39.130 0.00 0.00 39.32 3.06
7283 8769 4.344679 ACCTGAAGGCAAAATCAAATCACA 59.655 37.500 0.00 0.00 39.32 3.58
7284 8770 5.163322 ACCTGAAGGCAAAATCAAATCACAA 60.163 36.000 0.00 0.00 39.32 3.33
7285 8771 5.759273 CCTGAAGGCAAAATCAAATCACAAA 59.241 36.000 0.00 0.00 0.00 2.83
7286 8772 6.293027 CCTGAAGGCAAAATCAAATCACAAAC 60.293 38.462 0.00 0.00 0.00 2.93
7287 8773 6.347696 TGAAGGCAAAATCAAATCACAAACT 58.652 32.000 0.00 0.00 0.00 2.66
7288 8774 6.258287 TGAAGGCAAAATCAAATCACAAACTG 59.742 34.615 0.00 0.00 0.00 3.16
7289 8775 5.916318 AGGCAAAATCAAATCACAAACTGA 58.084 33.333 0.00 0.00 0.00 3.41
7290 8776 5.754890 AGGCAAAATCAAATCACAAACTGAC 59.245 36.000 0.00 0.00 0.00 3.51
7291 8777 5.050159 GGCAAAATCAAATCACAAACTGACC 60.050 40.000 0.00 0.00 0.00 4.02
7292 8778 5.754890 GCAAAATCAAATCACAAACTGACCT 59.245 36.000 0.00 0.00 0.00 3.85
7293 8779 6.292488 GCAAAATCAAATCACAAACTGACCTG 60.292 38.462 0.00 0.00 0.00 4.00
7294 8780 3.988379 TCAAATCACAAACTGACCTGC 57.012 42.857 0.00 0.00 0.00 4.85
7295 8781 3.554934 TCAAATCACAAACTGACCTGCT 58.445 40.909 0.00 0.00 0.00 4.24
7296 8782 3.565482 TCAAATCACAAACTGACCTGCTC 59.435 43.478 0.00 0.00 0.00 4.26
7297 8783 2.936919 ATCACAAACTGACCTGCTCA 57.063 45.000 0.00 0.00 0.00 4.26
7298 8784 1.953559 TCACAAACTGACCTGCTCAC 58.046 50.000 0.00 0.00 0.00 3.51
7299 8785 0.583438 CACAAACTGACCTGCTCACG 59.417 55.000 0.00 0.00 0.00 4.35
7300 8786 0.464036 ACAAACTGACCTGCTCACGA 59.536 50.000 0.00 0.00 0.00 4.35
7301 8787 1.134521 ACAAACTGACCTGCTCACGAA 60.135 47.619 0.00 0.00 0.00 3.85
7302 8788 1.939934 CAAACTGACCTGCTCACGAAA 59.060 47.619 0.00 0.00 0.00 3.46
7303 8789 2.549754 CAAACTGACCTGCTCACGAAAT 59.450 45.455 0.00 0.00 0.00 2.17
7304 8790 2.550830 ACTGACCTGCTCACGAAATT 57.449 45.000 0.00 0.00 0.00 1.82
7305 8791 2.851195 ACTGACCTGCTCACGAAATTT 58.149 42.857 0.00 0.00 0.00 1.82
7306 8792 3.214328 ACTGACCTGCTCACGAAATTTT 58.786 40.909 0.00 0.00 0.00 1.82
7307 8793 3.632145 ACTGACCTGCTCACGAAATTTTT 59.368 39.130 0.00 0.00 0.00 1.94
7327 8813 4.764679 TTTCACAATGATGACCCTTTCG 57.235 40.909 0.00 0.00 0.00 3.46
7328 8814 3.417069 TCACAATGATGACCCTTTCGT 57.583 42.857 0.00 0.00 0.00 3.85
7329 8815 3.073678 TCACAATGATGACCCTTTCGTG 58.926 45.455 0.00 0.00 0.00 4.35
7330 8816 2.813754 CACAATGATGACCCTTTCGTGT 59.186 45.455 0.00 0.00 0.00 4.49
7331 8817 2.813754 ACAATGATGACCCTTTCGTGTG 59.186 45.455 0.00 0.00 0.00 3.82
7332 8818 2.113860 ATGATGACCCTTTCGTGTGG 57.886 50.000 0.00 0.00 0.00 4.17
7333 8819 0.605319 TGATGACCCTTTCGTGTGGC 60.605 55.000 0.00 0.00 0.00 5.01
7334 8820 1.635663 GATGACCCTTTCGTGTGGCG 61.636 60.000 0.00 0.00 43.01 5.69
7335 8821 3.723348 GACCCTTTCGTGTGGCGC 61.723 66.667 0.00 0.00 41.07 6.53
7364 8850 3.876198 GCGCCGCACCCTACAATG 61.876 66.667 3.15 0.00 0.00 2.82
7365 8851 3.876198 CGCCGCACCCTACAATGC 61.876 66.667 0.00 0.00 38.52 3.56
7366 8852 2.749839 GCCGCACCCTACAATGCA 60.750 61.111 0.00 0.00 42.17 3.96
7367 8853 2.764314 GCCGCACCCTACAATGCAG 61.764 63.158 0.00 0.00 42.17 4.41
7368 8854 2.764314 CCGCACCCTACAATGCAGC 61.764 63.158 0.00 0.00 42.17 5.25
7369 8855 2.793946 GCACCCTACAATGCAGCG 59.206 61.111 0.00 0.00 41.65 5.18
7370 8856 2.793946 CACCCTACAATGCAGCGC 59.206 61.111 0.00 0.00 0.00 5.92
7371 8857 2.438434 ACCCTACAATGCAGCGCC 60.438 61.111 2.29 0.00 0.00 6.53
7372 8858 2.124570 CCCTACAATGCAGCGCCT 60.125 61.111 2.29 0.00 0.00 5.52
7373 8859 2.182842 CCCTACAATGCAGCGCCTC 61.183 63.158 2.29 0.00 0.00 4.70
7374 8860 2.528743 CCTACAATGCAGCGCCTCG 61.529 63.158 2.29 0.00 0.00 4.63
7375 8861 2.511373 TACAATGCAGCGCCTCGG 60.511 61.111 2.29 0.00 0.00 4.63
7382 8868 4.899239 CAGCGCCTCGGCCTTAGG 62.899 72.222 15.12 15.12 37.98 2.69
7392 8878 4.452733 GCCTTAGGCGTCGCACCT 62.453 66.667 20.50 10.37 39.62 4.00
7393 8879 2.202756 CCTTAGGCGTCGCACCTC 60.203 66.667 20.50 0.77 38.81 3.85
7394 8880 2.202756 CTTAGGCGTCGCACCTCC 60.203 66.667 20.50 0.35 38.81 4.30
7395 8881 2.678934 TTAGGCGTCGCACCTCCT 60.679 61.111 20.50 8.84 38.81 3.69
7396 8882 2.890847 CTTAGGCGTCGCACCTCCTG 62.891 65.000 20.50 0.00 38.81 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.826274 TTCCTCACTTATTGGAGTCAGG 57.174 45.455 0.00 0.00 39.09 3.86
1 2 5.982356 TCATTCCTCACTTATTGGAGTCAG 58.018 41.667 0.00 0.00 0.00 3.51
2 3 6.156775 TCATCATTCCTCACTTATTGGAGTCA 59.843 38.462 0.00 0.00 0.00 3.41
3 4 6.481644 GTCATCATTCCTCACTTATTGGAGTC 59.518 42.308 0.00 0.00 0.00 3.36
4 5 6.070021 TGTCATCATTCCTCACTTATTGGAGT 60.070 38.462 0.00 0.00 0.00 3.85
5 6 6.351711 TGTCATCATTCCTCACTTATTGGAG 58.648 40.000 0.00 0.00 0.00 3.86
6 7 6.312141 TGTCATCATTCCTCACTTATTGGA 57.688 37.500 0.00 0.00 0.00 3.53
7 8 5.008415 GCTGTCATCATTCCTCACTTATTGG 59.992 44.000 0.00 0.00 0.00 3.16
8 9 5.277202 CGCTGTCATCATTCCTCACTTATTG 60.277 44.000 0.00 0.00 0.00 1.90
9 10 4.813161 CGCTGTCATCATTCCTCACTTATT 59.187 41.667 0.00 0.00 0.00 1.40
10 11 4.375272 CGCTGTCATCATTCCTCACTTAT 58.625 43.478 0.00 0.00 0.00 1.73
11 12 3.430790 CCGCTGTCATCATTCCTCACTTA 60.431 47.826 0.00 0.00 0.00 2.24
12 13 2.625737 CGCTGTCATCATTCCTCACTT 58.374 47.619 0.00 0.00 0.00 3.16
13 14 1.134580 CCGCTGTCATCATTCCTCACT 60.135 52.381 0.00 0.00 0.00 3.41
14 15 1.293924 CCGCTGTCATCATTCCTCAC 58.706 55.000 0.00 0.00 0.00 3.51
15 16 0.462581 GCCGCTGTCATCATTCCTCA 60.463 55.000 0.00 0.00 0.00 3.86
16 17 1.493950 CGCCGCTGTCATCATTCCTC 61.494 60.000 0.00 0.00 0.00 3.71
17 18 1.522355 CGCCGCTGTCATCATTCCT 60.522 57.895 0.00 0.00 0.00 3.36
18 19 1.815421 ACGCCGCTGTCATCATTCC 60.815 57.895 0.00 0.00 0.00 3.01
19 20 1.349627 CACGCCGCTGTCATCATTC 59.650 57.895 0.00 0.00 0.00 2.67
20 21 2.753966 GCACGCCGCTGTCATCATT 61.754 57.895 0.00 0.00 37.77 2.57
21 22 3.197790 GCACGCCGCTGTCATCAT 61.198 61.111 0.00 0.00 37.77 2.45
24 25 4.704833 AAGGCACGCCGCTGTCAT 62.705 61.111 1.61 0.00 41.91 3.06
73 74 7.881775 ATTAAATCCATGTCTCTAAACCACC 57.118 36.000 0.00 0.00 0.00 4.61
217 218 0.108585 ACGCATGGTGTTCAGGTTCT 59.891 50.000 0.00 0.00 0.00 3.01
236 237 0.470341 TGTGGTGGAATGGAACGACA 59.530 50.000 0.00 0.00 33.37 4.35
246 247 1.562008 TGGAGTGAGTTTGTGGTGGAA 59.438 47.619 0.00 0.00 0.00 3.53
247 248 1.208706 TGGAGTGAGTTTGTGGTGGA 58.791 50.000 0.00 0.00 0.00 4.02
248 249 1.881973 CATGGAGTGAGTTTGTGGTGG 59.118 52.381 0.00 0.00 0.00 4.61
249 250 1.881973 CCATGGAGTGAGTTTGTGGTG 59.118 52.381 5.56 0.00 0.00 4.17
250 251 1.774254 TCCATGGAGTGAGTTTGTGGT 59.226 47.619 11.44 0.00 0.00 4.16
266 267 0.687354 ACAGAGACGGTGCTTTCCAT 59.313 50.000 0.00 0.00 0.00 3.41
271 272 1.367840 GGTGACAGAGACGGTGCTT 59.632 57.895 0.00 0.00 0.00 3.91
277 278 2.352032 GGAGGGGGTGACAGAGACG 61.352 68.421 0.00 0.00 0.00 4.18
281 282 0.840722 GGAAAGGAGGGGGTGACAGA 60.841 60.000 0.00 0.00 0.00 3.41
283 284 1.850755 GGGAAAGGAGGGGGTGACA 60.851 63.158 0.00 0.00 0.00 3.58
288 289 3.408853 GGACGGGAAAGGAGGGGG 61.409 72.222 0.00 0.00 0.00 5.40
586 591 3.586470 TCCTTGGTTTGCTCTGGTTTA 57.414 42.857 0.00 0.00 0.00 2.01
600 605 2.359975 GGGTGGCGACTTCCTTGG 60.360 66.667 0.00 0.00 0.00 3.61
601 606 2.742372 CGGGTGGCGACTTCCTTG 60.742 66.667 0.00 0.00 0.00 3.61
602 607 4.699522 GCGGGTGGCGACTTCCTT 62.700 66.667 0.00 0.00 0.00 3.36
688 706 1.271054 GGGGTGATTGATGGATCCGAG 60.271 57.143 7.39 0.00 0.00 4.63
744 768 1.913419 GTATTCTGTCCTTGGGGGTGA 59.087 52.381 0.00 0.00 36.25 4.02
766 790 3.270877 GCGATACTTTCATGGAAGTGGT 58.729 45.455 26.79 16.22 39.99 4.16
789 813 1.139095 CTCCGTTGCTACCTCGACC 59.861 63.158 0.00 0.00 0.00 4.79
790 814 0.179169 GACTCCGTTGCTACCTCGAC 60.179 60.000 0.00 0.00 0.00 4.20
802 826 3.551496 TACGTGGGTCCGACTCCGT 62.551 63.158 16.01 16.01 32.07 4.69
900 951 3.697747 CCCACCAACTCCGCCGTA 61.698 66.667 0.00 0.00 0.00 4.02
921 972 1.984570 CCTCGTCTCTGCTTCCCCA 60.985 63.158 0.00 0.00 0.00 4.96
926 977 0.682855 CCTCCTCCTCGTCTCTGCTT 60.683 60.000 0.00 0.00 0.00 3.91
929 980 0.465460 CCTCCTCCTCCTCGTCTCTG 60.465 65.000 0.00 0.00 0.00 3.35
930 981 0.622154 TCCTCCTCCTCCTCGTCTCT 60.622 60.000 0.00 0.00 0.00 3.10
931 982 0.179029 CTCCTCCTCCTCCTCGTCTC 60.179 65.000 0.00 0.00 0.00 3.36
932 983 1.641552 CCTCCTCCTCCTCCTCGTCT 61.642 65.000 0.00 0.00 0.00 4.18
935 986 1.150536 CTCCTCCTCCTCCTCCTCG 59.849 68.421 0.00 0.00 0.00 4.63
936 987 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
937 988 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
940 991 2.018086 CCCTCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
941 992 2.612251 CCCTCCTCCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
942 993 2.015726 TCCCCTCCTCCTCCTCCTC 61.016 68.421 0.00 0.00 0.00 3.71
943 994 2.018086 CTCCCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
944 995 2.612251 CTCCCCTCCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
945 996 2.612251 CCTCCCCTCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
946 997 3.039526 CCCTCCCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
949 1000 3.296737 AAGCCCTCCCCTCCTCCT 61.297 66.667 0.00 0.00 0.00 3.69
950 1001 2.770475 GAAGCCCTCCCCTCCTCC 60.770 72.222 0.00 0.00 0.00 4.30
957 1008 0.322906 CCTGTCAAAGAAGCCCTCCC 60.323 60.000 0.00 0.00 0.00 4.30
959 1010 0.693049 TCCCTGTCAAAGAAGCCCTC 59.307 55.000 0.00 0.00 0.00 4.30
964 1015 2.301296 TCTGCTCTCCCTGTCAAAGAAG 59.699 50.000 0.00 0.00 0.00 2.85
987 1038 4.147449 TCCATGGCGGCGTCTCTG 62.147 66.667 14.51 10.38 33.14 3.35
988 1039 3.842923 CTCCATGGCGGCGTCTCT 61.843 66.667 14.51 0.00 33.14 3.10
1068 1127 4.373116 ACGACCTTGCGCCATCGT 62.373 61.111 16.41 16.41 42.66 3.73
1209 1276 7.067494 CCAAGAAATTTAGATGGAAATCGAGGT 59.933 37.037 9.65 0.00 32.82 3.85
1210 1277 7.283127 TCCAAGAAATTTAGATGGAAATCGAGG 59.717 37.037 13.75 0.00 37.24 4.63
1240 1351 1.000955 TCTCCGTTCCAGAGTTCTTGC 59.999 52.381 0.00 0.00 32.93 4.01
1454 1611 3.243907 GCCTACTGTCATGGCCTAACTAG 60.244 52.174 3.32 0.00 40.71 2.57
1475 1632 1.134159 AGTCATTGCCCTCTCAGATGC 60.134 52.381 0.00 0.00 0.00 3.91
1524 1683 3.119495 GGCGAACAATTAGAGGTGCATTT 60.119 43.478 0.00 0.00 0.00 2.32
1545 1704 3.745975 TCACTCTTAACAAACAGATGCGG 59.254 43.478 0.00 0.00 0.00 5.69
1616 1775 9.210426 CTTTTTACATACGTGCATTAATGAGAC 57.790 33.333 19.73 12.74 0.00 3.36
1680 1839 9.722056 CTTTCGGTTATAGTAGTTTACATACGT 57.278 33.333 0.00 0.00 0.00 3.57
1726 1891 9.764363 TGATATGCTACATAGAAATCGAAAAGT 57.236 29.630 0.00 0.00 0.00 2.66
1732 1897 9.803130 CAAGTTTGATATGCTACATAGAAATCG 57.197 33.333 0.00 0.00 0.00 3.34
1746 1912 8.192774 ACAATCAACTATGGCAAGTTTGATATG 58.807 33.333 16.52 16.86 37.61 1.78
1747 1913 8.297470 ACAATCAACTATGGCAAGTTTGATAT 57.703 30.769 16.52 8.94 37.61 1.63
1771 1937 9.294030 CTGATAATTGTTCTAGCAAATGGAAAC 57.706 33.333 0.00 0.00 29.12 2.78
1855 2022 2.095718 CGTTTTTCACAAGGCTCTAGGC 60.096 50.000 0.00 0.00 41.43 3.93
1856 2023 2.095718 GCGTTTTTCACAAGGCTCTAGG 60.096 50.000 0.00 0.00 35.18 3.02
1857 2024 2.548057 TGCGTTTTTCACAAGGCTCTAG 59.452 45.455 0.00 0.00 38.19 2.43
1858 2025 2.548057 CTGCGTTTTTCACAAGGCTCTA 59.452 45.455 0.00 0.00 38.19 2.43
1859 2026 1.334869 CTGCGTTTTTCACAAGGCTCT 59.665 47.619 0.00 0.00 38.19 4.09
1860 2027 1.758783 CTGCGTTTTTCACAAGGCTC 58.241 50.000 0.00 0.00 38.19 4.70
1905 2072 8.434589 TGATGTTTTAATGGAGATTCCCTTTT 57.565 30.769 0.00 0.00 35.03 2.27
1906 2073 8.613922 ATGATGTTTTAATGGAGATTCCCTTT 57.386 30.769 0.00 0.00 35.03 3.11
1907 2074 8.613922 AATGATGTTTTAATGGAGATTCCCTT 57.386 30.769 0.00 0.00 35.03 3.95
1909 2076 9.918630 CATAATGATGTTTTAATGGAGATTCCC 57.081 33.333 0.00 0.00 35.03 3.97
1910 2077 9.918630 CCATAATGATGTTTTAATGGAGATTCC 57.081 33.333 0.00 0.00 36.96 3.01
1917 2084 9.492973 GGGAATTCCATAATGATGTTTTAATGG 57.507 33.333 25.67 0.00 37.91 3.16
1918 2085 9.492973 GGGGAATTCCATAATGATGTTTTAATG 57.507 33.333 25.67 0.00 37.91 1.90
1919 2086 9.451206 AGGGGAATTCCATAATGATGTTTTAAT 57.549 29.630 25.67 0.00 37.91 1.40
1920 2087 8.703743 CAGGGGAATTCCATAATGATGTTTTAA 58.296 33.333 25.67 0.00 37.91 1.52
1921 2088 8.064389 TCAGGGGAATTCCATAATGATGTTTTA 58.936 33.333 25.67 0.00 37.91 1.52
1922 2089 6.902416 TCAGGGGAATTCCATAATGATGTTTT 59.098 34.615 25.67 0.00 37.91 2.43
1923 2090 6.442961 TCAGGGGAATTCCATAATGATGTTT 58.557 36.000 25.67 0.00 37.91 2.83
1924 2091 6.029492 TCAGGGGAATTCCATAATGATGTT 57.971 37.500 25.67 0.00 37.91 2.71
1925 2092 5.668135 TCAGGGGAATTCCATAATGATGT 57.332 39.130 25.67 0.00 37.91 3.06
1926 2093 8.654485 TTTATCAGGGGAATTCCATAATGATG 57.346 34.615 26.80 15.99 37.91 3.07
1927 2094 7.897565 CCTTTATCAGGGGAATTCCATAATGAT 59.102 37.037 25.67 24.82 39.39 2.45
1928 2095 7.240897 CCTTTATCAGGGGAATTCCATAATGA 58.759 38.462 25.67 20.76 39.39 2.57
1929 2096 7.472334 CCTTTATCAGGGGAATTCCATAATG 57.528 40.000 25.67 18.95 39.39 1.90
1970 2137 8.328864 GCGTGTTCTTCCTGTAGAATAAAATAG 58.671 37.037 0.00 0.00 36.60 1.73
1983 2150 1.884235 AAAGGAGCGTGTTCTTCCTG 58.116 50.000 0.00 0.00 0.00 3.86
1984 2151 3.983044 ATAAAGGAGCGTGTTCTTCCT 57.017 42.857 0.00 0.00 0.00 3.36
1985 2152 5.372547 AAAATAAAGGAGCGTGTTCTTCC 57.627 39.130 0.00 0.00 0.00 3.46
2134 2783 8.840321 AGCGCTACTGAATGATGTTTTAATAAT 58.160 29.630 8.99 0.00 0.00 1.28
2408 3221 6.077838 GTGAAATTGTGTTCGTGGTAAGATC 58.922 40.000 0.00 0.00 0.00 2.75
2419 3232 4.044426 GCAAGACCTGTGAAATTGTGTTC 58.956 43.478 0.00 0.00 0.00 3.18
2448 3261 2.268022 AGGGACTGTGTACTCGCTG 58.732 57.895 0.00 0.00 37.18 5.18
2472 3285 1.153289 ATAGCCTGCTGCCTTGACG 60.153 57.895 0.97 0.00 42.71 4.35
2814 3627 1.954382 AGAATACTAGCGACGATGCCA 59.046 47.619 0.00 0.00 34.65 4.92
3686 4499 3.306434 CGAGAGCATTGTCATGACAGAAG 59.694 47.826 26.48 20.37 42.94 2.85
3729 4542 1.715585 GATGACAACATCGCCACCG 59.284 57.895 0.00 0.00 42.45 4.94
3810 4623 0.247736 AATCTCCACCGAGTGACAGC 59.752 55.000 5.71 0.00 37.40 4.40
3867 4680 0.248012 TCGCGGAGTTAAATGGCTCA 59.752 50.000 6.13 0.00 33.66 4.26
3882 4695 1.134965 ACTCCCATTCTCTTCTTCGCG 60.135 52.381 0.00 0.00 0.00 5.87
4131 4944 3.256704 TGTGTACCCCTCTTCAGGAATT 58.743 45.455 0.00 0.00 43.65 2.17
4405 5218 6.095860 CCAGAAATGATAGGCAAGACAAATGA 59.904 38.462 0.00 0.00 0.00 2.57
4821 5670 5.182001 ACTGGAGCAAACATGTAATTGACTC 59.818 40.000 13.30 15.79 33.18 3.36
5180 6053 4.074647 GCTGGTGGCGTAAAACCT 57.925 55.556 0.00 0.00 37.36 3.50
5253 6128 5.479124 ACAGCCCTAAAGGTAATATACGG 57.521 43.478 0.00 0.00 38.26 4.02
5254 6129 6.987992 TGAAACAGCCCTAAAGGTAATATACG 59.012 38.462 0.00 0.00 38.26 3.06
5281 6156 9.832445 GAGTTGGTTTATCATAATAACTGGAGA 57.168 33.333 6.85 0.00 0.00 3.71
5311 6186 4.342352 GCATGTAGCAGTTAGTTCCAAC 57.658 45.455 0.00 0.00 44.79 3.77
5407 6282 8.681486 AATACTAATTTCCGGGTGTAATAACC 57.319 34.615 0.00 0.00 39.71 2.85
5436 6311 9.884465 GGAACTAATGCTTTGCTACATTAATAG 57.116 33.333 0.00 0.00 38.06 1.73
5732 6607 4.095932 AGTTCAAACAACGTCTTTCCTTCC 59.904 41.667 0.00 0.00 0.00 3.46
5836 6711 5.228665 TCGCAGAAATCAAATGAATGCAAA 58.771 33.333 0.00 0.00 32.58 3.68
5861 6736 6.072452 GGGAACAGTGAAATCCTAAAAGACTG 60.072 42.308 0.00 0.00 36.30 3.51
6105 6982 5.122396 CACTATCACCCAGAAAAACTAGCAC 59.878 44.000 0.00 0.00 0.00 4.40
6132 7009 6.455360 AACAAAAACTTCAGCTCATCTTCA 57.545 33.333 0.00 0.00 0.00 3.02
6222 7099 0.247379 GCGACGAACACGTTGTTGTT 60.247 50.000 0.00 0.00 41.28 2.83
6417 7294 5.133221 AGTTCCTGACTGCAAATTAGTTGT 58.867 37.500 0.00 0.00 39.63 3.32
6573 7453 7.820648 TCCTCTAAAGATCAAATGCAAAAGAC 58.179 34.615 0.00 0.00 0.00 3.01
6734 7641 7.388224 CCAATCCAAACATCATGTCAAATCAAA 59.612 33.333 0.00 0.00 0.00 2.69
6741 7648 3.433343 AGCCAATCCAAACATCATGTCA 58.567 40.909 0.00 0.00 0.00 3.58
6777 7684 5.011023 AGGTACAAAAGATGGCAAAAGGAAG 59.989 40.000 0.00 0.00 0.00 3.46
6779 7686 4.479158 AGGTACAAAAGATGGCAAAAGGA 58.521 39.130 0.00 0.00 0.00 3.36
6795 7702 3.132925 GCACTGGACGTTAAAAGGTACA 58.867 45.455 0.00 0.91 35.43 2.90
6796 7703 2.481568 GGCACTGGACGTTAAAAGGTAC 59.518 50.000 0.00 0.00 0.00 3.34
6797 7704 2.104451 TGGCACTGGACGTTAAAAGGTA 59.896 45.455 0.00 0.00 0.00 3.08
6798 7705 1.134037 TGGCACTGGACGTTAAAAGGT 60.134 47.619 0.00 0.00 0.00 3.50
6800 7707 2.489971 TCTGGCACTGGACGTTAAAAG 58.510 47.619 0.00 0.00 0.00 2.27
6805 7712 1.981256 AATTTCTGGCACTGGACGTT 58.019 45.000 0.00 0.00 0.00 3.99
6845 7755 5.106157 ACACCGGACAAGAATGATTGAAATC 60.106 40.000 9.46 0.00 34.20 2.17
6849 7759 3.073678 CACACCGGACAAGAATGATTGA 58.926 45.455 9.46 0.00 34.20 2.57
6850 7760 3.073678 TCACACCGGACAAGAATGATTG 58.926 45.455 9.46 0.00 36.22 2.67
6852 7762 2.303022 AGTCACACCGGACAAGAATGAT 59.697 45.455 9.46 0.00 40.29 2.45
6853 7763 1.691976 AGTCACACCGGACAAGAATGA 59.308 47.619 9.46 0.00 40.29 2.57
6854 7764 2.169832 AGTCACACCGGACAAGAATG 57.830 50.000 9.46 0.00 40.29 2.67
6855 7765 3.513912 TGATAGTCACACCGGACAAGAAT 59.486 43.478 9.46 2.04 40.29 2.40
6881 7793 3.814945 CAACTTCCAAAGAATCACGCTC 58.185 45.455 0.00 0.00 0.00 5.03
6949 7861 1.878088 CACACTGTTCTGCTCAATGCT 59.122 47.619 0.00 0.00 43.37 3.79
6950 7862 1.068748 CCACACTGTTCTGCTCAATGC 60.069 52.381 0.00 0.00 43.25 3.56
6951 7863 1.538512 CCCACACTGTTCTGCTCAATG 59.461 52.381 0.00 0.00 0.00 2.82
6954 7866 0.179048 CACCCACACTGTTCTGCTCA 60.179 55.000 0.00 0.00 0.00 4.26
6955 7867 1.510480 GCACCCACACTGTTCTGCTC 61.510 60.000 0.00 0.00 0.00 4.26
6956 7868 1.526917 GCACCCACACTGTTCTGCT 60.527 57.895 0.00 0.00 0.00 4.24
6957 7869 1.103398 AAGCACCCACACTGTTCTGC 61.103 55.000 0.00 0.00 0.00 4.26
6985 7905 1.523154 CTGCCAAAGCCCAAACGCTA 61.523 55.000 0.00 0.00 38.44 4.26
6987 7907 2.356194 CTGCCAAAGCCCAAACGC 60.356 61.111 0.00 0.00 38.69 4.84
6988 7908 0.875474 CAACTGCCAAAGCCCAAACG 60.875 55.000 0.00 0.00 38.69 3.60
6989 7909 0.532640 CCAACTGCCAAAGCCCAAAC 60.533 55.000 0.00 0.00 38.69 2.93
6992 7912 3.233231 GCCAACTGCCAAAGCCCA 61.233 61.111 0.00 0.00 38.69 5.36
7020 8500 3.072184 GTGATGTGGAGATAAGGCTGGAT 59.928 47.826 0.00 0.00 0.00 3.41
7058 8538 1.679977 TGATGGAAGCAAGCTGCCC 60.680 57.895 16.41 11.06 46.52 5.36
7146 8626 3.641906 AGCAGGAGTTGTTGTAGTACACT 59.358 43.478 1.43 0.00 0.00 3.55
7147 8627 3.741344 CAGCAGGAGTTGTTGTAGTACAC 59.259 47.826 1.43 0.00 33.74 2.90
7153 8633 1.134250 TGTGCAGCAGGAGTTGTTGTA 60.134 47.619 0.00 0.00 39.89 2.41
7195 8681 2.947938 CTATCCCAAGTGGCCGCTGG 62.948 65.000 22.03 21.60 0.00 4.85
7241 8727 5.357878 TCAGGTCAAATATGTGATTTCTGCC 59.642 40.000 14.18 5.01 0.00 4.85
7244 8730 6.096001 GCCTTCAGGTCAAATATGTGATTTCT 59.904 38.462 0.00 0.00 37.57 2.52
7245 8731 6.127647 TGCCTTCAGGTCAAATATGTGATTTC 60.128 38.462 0.00 0.00 37.57 2.17
7246 8732 5.716228 TGCCTTCAGGTCAAATATGTGATTT 59.284 36.000 0.00 0.00 37.57 2.17
7247 8733 5.263599 TGCCTTCAGGTCAAATATGTGATT 58.736 37.500 0.00 0.00 37.57 2.57
7248 8734 4.858850 TGCCTTCAGGTCAAATATGTGAT 58.141 39.130 0.00 0.00 37.57 3.06
7249 8735 4.299586 TGCCTTCAGGTCAAATATGTGA 57.700 40.909 0.00 0.00 37.57 3.58
7250 8736 5.389859 TTTGCCTTCAGGTCAAATATGTG 57.610 39.130 9.89 0.00 36.78 3.21
7251 8737 6.211184 TGATTTTGCCTTCAGGTCAAATATGT 59.789 34.615 13.05 4.52 39.27 2.29
7252 8738 6.632909 TGATTTTGCCTTCAGGTCAAATATG 58.367 36.000 13.05 0.00 39.27 1.78
7253 8739 6.855763 TGATTTTGCCTTCAGGTCAAATAT 57.144 33.333 13.05 10.44 39.27 1.28
7254 8740 6.662865 TTGATTTTGCCTTCAGGTCAAATA 57.337 33.333 13.05 7.56 39.27 1.40
7255 8741 5.549742 TTGATTTTGCCTTCAGGTCAAAT 57.450 34.783 13.05 9.10 39.27 2.32
7256 8742 5.350504 TTTGATTTTGCCTTCAGGTCAAA 57.649 34.783 9.89 9.89 38.48 2.69
7257 8743 5.070180 TGATTTGATTTTGCCTTCAGGTCAA 59.930 36.000 0.00 0.00 37.57 3.18
7258 8744 4.588106 TGATTTGATTTTGCCTTCAGGTCA 59.412 37.500 0.00 0.00 37.57 4.02
7259 8745 4.925646 GTGATTTGATTTTGCCTTCAGGTC 59.074 41.667 0.00 0.00 37.57 3.85
7260 8746 4.344679 TGTGATTTGATTTTGCCTTCAGGT 59.655 37.500 0.00 0.00 37.57 4.00
7261 8747 4.885413 TGTGATTTGATTTTGCCTTCAGG 58.115 39.130 0.00 0.00 38.53 3.86
7262 8748 6.480981 AGTTTGTGATTTGATTTTGCCTTCAG 59.519 34.615 0.00 0.00 0.00 3.02
7263 8749 6.258287 CAGTTTGTGATTTGATTTTGCCTTCA 59.742 34.615 0.00 0.00 0.00 3.02
7264 8750 6.479660 TCAGTTTGTGATTTGATTTTGCCTTC 59.520 34.615 0.00 0.00 0.00 3.46
7265 8751 6.258507 GTCAGTTTGTGATTTGATTTTGCCTT 59.741 34.615 0.00 0.00 37.56 4.35
7266 8752 5.754890 GTCAGTTTGTGATTTGATTTTGCCT 59.245 36.000 0.00 0.00 37.56 4.75
7267 8753 5.050159 GGTCAGTTTGTGATTTGATTTTGCC 60.050 40.000 0.00 0.00 37.56 4.52
7268 8754 5.754890 AGGTCAGTTTGTGATTTGATTTTGC 59.245 36.000 0.00 0.00 37.56 3.68
7269 8755 6.292488 GCAGGTCAGTTTGTGATTTGATTTTG 60.292 38.462 0.00 0.00 37.56 2.44
7270 8756 5.754890 GCAGGTCAGTTTGTGATTTGATTTT 59.245 36.000 0.00 0.00 37.56 1.82
7271 8757 5.069516 AGCAGGTCAGTTTGTGATTTGATTT 59.930 36.000 0.00 0.00 37.56 2.17
7272 8758 4.586001 AGCAGGTCAGTTTGTGATTTGATT 59.414 37.500 0.00 0.00 37.56 2.57
7273 8759 4.147321 AGCAGGTCAGTTTGTGATTTGAT 58.853 39.130 0.00 0.00 37.56 2.57
7274 8760 3.554934 AGCAGGTCAGTTTGTGATTTGA 58.445 40.909 0.00 0.00 37.56 2.69
7275 8761 3.316029 TGAGCAGGTCAGTTTGTGATTTG 59.684 43.478 0.00 0.00 37.56 2.32
7276 8762 3.316308 GTGAGCAGGTCAGTTTGTGATTT 59.684 43.478 1.45 0.00 37.56 2.17
7277 8763 2.880890 GTGAGCAGGTCAGTTTGTGATT 59.119 45.455 1.45 0.00 37.56 2.57
7278 8764 2.498167 GTGAGCAGGTCAGTTTGTGAT 58.502 47.619 1.45 0.00 37.56 3.06
7279 8765 1.806247 CGTGAGCAGGTCAGTTTGTGA 60.806 52.381 1.45 0.00 35.13 3.58
7280 8766 0.583438 CGTGAGCAGGTCAGTTTGTG 59.417 55.000 1.45 0.00 35.13 3.33
7281 8767 0.464036 TCGTGAGCAGGTCAGTTTGT 59.536 50.000 1.45 0.00 35.13 2.83
7282 8768 1.581934 TTCGTGAGCAGGTCAGTTTG 58.418 50.000 1.45 0.00 35.13 2.93
7283 8769 2.325583 TTTCGTGAGCAGGTCAGTTT 57.674 45.000 1.45 0.00 35.13 2.66
7284 8770 2.550830 ATTTCGTGAGCAGGTCAGTT 57.449 45.000 1.45 0.00 35.13 3.16
7285 8771 2.550830 AATTTCGTGAGCAGGTCAGT 57.449 45.000 1.45 0.00 35.13 3.41
7286 8772 3.904136 AAAATTTCGTGAGCAGGTCAG 57.096 42.857 1.45 0.00 35.13 3.51
7304 8790 5.068460 ACGAAAGGGTCATCATTGTGAAAAA 59.932 36.000 0.00 0.00 0.00 1.94
7305 8791 4.582656 ACGAAAGGGTCATCATTGTGAAAA 59.417 37.500 0.00 0.00 0.00 2.29
7306 8792 4.023279 CACGAAAGGGTCATCATTGTGAAA 60.023 41.667 0.00 0.00 0.00 2.69
7307 8793 3.501828 CACGAAAGGGTCATCATTGTGAA 59.498 43.478 0.00 0.00 0.00 3.18
7308 8794 3.073678 CACGAAAGGGTCATCATTGTGA 58.926 45.455 0.00 0.00 0.00 3.58
7309 8795 3.476295 CACGAAAGGGTCATCATTGTG 57.524 47.619 0.00 0.00 0.00 3.33
7347 8833 3.876198 CATTGTAGGGTGCGGCGC 61.876 66.667 27.44 27.44 0.00 6.53
7348 8834 3.876198 GCATTGTAGGGTGCGGCG 61.876 66.667 0.51 0.51 0.00 6.46
7349 8835 2.749839 TGCATTGTAGGGTGCGGC 60.750 61.111 0.00 0.00 44.11 6.53
7350 8836 3.501396 CTGCATTGTAGGGTGCGG 58.499 61.111 0.00 0.00 44.11 5.69
7351 8837 2.793946 GCTGCATTGTAGGGTGCG 59.206 61.111 3.87 0.00 44.11 5.34
7352 8838 2.793946 CGCTGCATTGTAGGGTGC 59.206 61.111 10.10 0.00 41.61 5.01
7353 8839 2.764314 GGCGCTGCATTGTAGGGTG 61.764 63.158 17.64 0.00 0.00 4.61
7354 8840 2.438434 GGCGCTGCATTGTAGGGT 60.438 61.111 17.64 0.00 0.00 4.34
7355 8841 2.124570 AGGCGCTGCATTGTAGGG 60.125 61.111 7.64 13.34 0.00 3.53
7356 8842 2.528743 CGAGGCGCTGCATTGTAGG 61.529 63.158 7.64 0.00 0.00 3.18
7357 8843 2.528743 CCGAGGCGCTGCATTGTAG 61.529 63.158 7.64 0.00 0.00 2.74
7358 8844 2.511373 CCGAGGCGCTGCATTGTA 60.511 61.111 7.64 0.00 0.00 2.41
7365 8851 4.899239 CCTAAGGCCGAGGCGCTG 62.899 72.222 13.22 0.00 43.06 5.18
7375 8861 4.452733 AGGTGCGACGCCTAAGGC 62.453 66.667 18.69 0.00 43.18 4.35
7376 8862 2.202756 GAGGTGCGACGCCTAAGG 60.203 66.667 18.69 0.00 45.19 2.69
7377 8863 2.202756 GGAGGTGCGACGCCTAAG 60.203 66.667 18.69 0.00 45.19 2.18
7378 8864 2.678934 AGGAGGTGCGACGCCTAA 60.679 61.111 18.69 0.00 45.19 2.69
7379 8865 3.449227 CAGGAGGTGCGACGCCTA 61.449 66.667 18.69 0.00 45.19 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.