Multiple sequence alignment - TraesCS4B01G257900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G257900 chr4B 100.000 3407 0 0 1 3407 523946796 523950202 0.000000e+00 6292
1 TraesCS4B01G257900 chr4B 79.769 692 84 22 1 641 523734277 523734963 5.180000e-123 451
2 TraesCS4B01G257900 chr4B 77.969 699 87 29 1 641 523735505 523736194 3.210000e-100 375
3 TraesCS4B01G257900 chr4B 77.535 641 98 28 35 638 523731929 523732560 9.050000e-91 344
4 TraesCS4B01G257900 chr4D 90.654 2354 98 49 110 2364 427912975 427915305 0.000000e+00 3016
5 TraesCS4B01G257900 chr4D 89.013 628 22 29 2798 3407 427915719 427916317 0.000000e+00 734
6 TraesCS4B01G257900 chr4D 80.090 668 97 17 1 639 427911886 427912546 6.660000e-127 464
7 TraesCS4B01G257900 chr4D 79.509 693 79 25 1 641 427597150 427596469 5.220000e-118 435
8 TraesCS4B01G257900 chr4D 93.357 286 9 4 2494 2774 427915378 427915658 6.800000e-112 414
9 TraesCS4B01G257900 chr4D 78.674 694 91 33 1 641 427598387 427597698 3.160000e-110 409
10 TraesCS4B01G257900 chr4D 84.048 420 52 6 237 642 427910922 427911340 1.150000e-104 390
11 TraesCS4B01G257900 chr4D 84.545 110 9 3 6 107 427910716 427910825 6.010000e-18 102
12 TraesCS4B01G257900 chr4A 86.583 1990 112 61 452 2356 38374705 38372786 0.000000e+00 2052
13 TraesCS4B01G257900 chr4A 83.134 836 61 41 2460 3244 38372738 38371932 0.000000e+00 689
14 TraesCS4B01G257900 chr4A 78.783 674 99 25 1 641 38377129 38376467 2.450000e-111 412
15 TraesCS4B01G257900 chr4A 81.532 444 50 19 1 414 38375937 38375496 1.510000e-88 337
16 TraesCS4B01G257900 chr7A 93.160 614 28 7 1758 2364 671780843 671781449 0.000000e+00 889
17 TraesCS4B01G257900 chr7A 89.474 399 25 10 2457 2850 671781493 671781879 3.950000e-134 488
18 TraesCS4B01G257900 chr2B 100.000 100 0 0 2362 2461 161014693 161014594 5.810000e-43 185
19 TraesCS4B01G257900 chr7B 100.000 98 0 0 2364 2461 582745394 582745491 7.510000e-42 182
20 TraesCS4B01G257900 chr3D 99.000 100 1 0 2362 2461 172077088 172076989 2.700000e-41 180
21 TraesCS4B01G257900 chr3D 98.000 100 2 0 2362 2461 361222712 361222811 1.260000e-39 174
22 TraesCS4B01G257900 chr5B 98.990 99 1 0 2363 2461 231450058 231449960 9.720000e-41 178
23 TraesCS4B01G257900 chr7D 98.000 100 2 0 2362 2461 375031755 375031656 1.260000e-39 174
24 TraesCS4B01G257900 chr6D 98.000 100 2 0 2362 2461 63939580 63939679 1.260000e-39 174
25 TraesCS4B01G257900 chr5D 98.000 100 2 0 2362 2461 232189487 232189586 1.260000e-39 174
26 TraesCS4B01G257900 chr2D 98.000 100 2 0 2362 2461 220996104 220996203 1.260000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G257900 chr4B 523946796 523950202 3406 False 6292.000000 6292 100.000000 1 3407 1 chr4B.!!$F1 3406
1 TraesCS4B01G257900 chr4B 523731929 523736194 4265 False 390.000000 451 78.424333 1 641 3 chr4B.!!$F2 640
2 TraesCS4B01G257900 chr4D 427910716 427916317 5601 False 853.333333 3016 86.951167 1 3407 6 chr4D.!!$F1 3406
3 TraesCS4B01G257900 chr4D 427596469 427598387 1918 True 422.000000 435 79.091500 1 641 2 chr4D.!!$R1 640
4 TraesCS4B01G257900 chr4A 38371932 38377129 5197 True 872.500000 2052 82.508000 1 3244 4 chr4A.!!$R1 3243
5 TraesCS4B01G257900 chr7A 671780843 671781879 1036 False 688.500000 889 91.317000 1758 2850 2 chr7A.!!$F1 1092

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 4696 0.107800 GTCGCCTACCCTTTCCTTCC 60.108 60.0 0.0 0.0 0.0 3.46 F
1535 5652 0.108233 CCTCTGTTCTGCTCTGCTCC 60.108 60.0 0.0 0.0 0.0 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2402 6558 0.034337 TCCACCGGCTACTGTTCAAC 59.966 55.0 0.0 0.0 0.00 3.18 R
3061 7304 0.033796 ATGGCATGACCCAACAGAGG 60.034 55.0 0.0 0.0 38.61 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 2475 1.077828 TCTCCTGAGCCCTTCTCTTGA 59.922 52.381 0.00 0.00 42.38 3.02
39 2498 4.104086 TGAGCCCTTCTCTTGAATCCTAA 58.896 43.478 0.00 0.00 42.38 2.69
56 2515 9.085645 TGAATCCTAAAAGTCTCAGTGTAAGTA 57.914 33.333 0.00 0.00 0.00 2.24
62 2521 6.919775 AAAGTCTCAGTGTAAGTACCTCAT 57.080 37.500 0.00 0.00 0.00 2.90
64 2523 8.596781 AAAGTCTCAGTGTAAGTACCTCATAT 57.403 34.615 0.00 0.00 0.00 1.78
94 2553 7.040686 TGTGCCCTTAGTTCTTTTTAGATCAAC 60.041 37.037 0.00 0.00 0.00 3.18
134 2596 5.560966 TTTTATGAAATCGGCCTGTTCTC 57.439 39.130 0.00 0.00 0.00 2.87
155 2617 3.325425 TCTCAATACCAAAGACCGAACCA 59.675 43.478 0.00 0.00 0.00 3.67
180 2642 2.943690 TGACCGAGAACCGAATAGAGAG 59.056 50.000 0.00 0.00 41.76 3.20
182 2644 3.207778 ACCGAGAACCGAATAGAGAGAG 58.792 50.000 0.00 0.00 41.76 3.20
186 2648 5.163642 CCGAGAACCGAATAGAGAGAGAAAA 60.164 44.000 0.00 0.00 41.76 2.29
253 2744 0.445436 ACCGTACAGACTAACGCTCG 59.555 55.000 4.42 0.00 37.78 5.03
278 2769 6.071278 GGACTTATACATGTAGATGGAGGGAC 60.071 46.154 11.91 0.00 33.39 4.46
379 2870 4.453478 ACAGATACACACAACTTCATGCAG 59.547 41.667 0.00 0.00 0.00 4.41
415 2908 1.680338 GCTCTCCATAAAACCGGCAT 58.320 50.000 0.00 0.00 0.00 4.40
421 2923 1.340889 CCATAAAACCGGCATCATGGG 59.659 52.381 14.85 0.87 31.28 4.00
437 2939 6.209391 GCATCATGGGTTAAAGCTGGTATTAT 59.791 38.462 0.00 0.00 0.00 1.28
462 2964 0.311165 GCCTTCTCGCAGTATCGCTA 59.689 55.000 0.00 0.00 0.00 4.26
463 2965 1.068194 GCCTTCTCGCAGTATCGCTAT 60.068 52.381 0.00 0.00 0.00 2.97
478 2980 2.101750 TCGCTATTCAGGAATACGGCAA 59.898 45.455 16.42 0.00 33.21 4.52
479 2981 3.067106 CGCTATTCAGGAATACGGCAAT 58.933 45.455 11.45 0.00 32.50 3.56
480 2982 3.120546 CGCTATTCAGGAATACGGCAATG 60.121 47.826 11.45 0.00 32.50 2.82
481 2983 3.365364 GCTATTCAGGAATACGGCAATGC 60.365 47.826 0.00 0.00 32.50 3.56
522 3024 2.546368 CGTTCAAGATCCGGTCACAAAA 59.454 45.455 0.00 0.00 0.00 2.44
554 3058 1.823828 GACCAGTATGCACGTAGACG 58.176 55.000 0.00 0.00 39.43 4.18
570 3074 1.863454 AGACGATGCGTAGTACGTAGG 59.137 52.381 22.81 16.43 44.73 3.18
586 4607 0.492730 TAGGTACACCCCCAACTGGA 59.507 55.000 0.00 0.00 34.96 3.86
590 4611 1.133730 GTACACCCCCAACTGGACAAA 60.134 52.381 0.00 0.00 37.39 2.83
592 4613 1.152546 ACCCCCAACTGGACAAAGC 60.153 57.895 0.00 0.00 37.39 3.51
594 4615 1.181098 CCCCCAACTGGACAAAGCAG 61.181 60.000 0.00 0.00 37.39 4.24
643 4686 4.849329 CGCCACTCGTCGCCTACC 62.849 72.222 0.00 0.00 0.00 3.18
644 4687 4.509737 GCCACTCGTCGCCTACCC 62.510 72.222 0.00 0.00 0.00 3.69
645 4688 2.754658 CCACTCGTCGCCTACCCT 60.755 66.667 0.00 0.00 0.00 4.34
647 4690 1.590147 CACTCGTCGCCTACCCTTT 59.410 57.895 0.00 0.00 0.00 3.11
648 4691 0.458025 CACTCGTCGCCTACCCTTTC 60.458 60.000 0.00 0.00 0.00 2.62
649 4692 1.141234 CTCGTCGCCTACCCTTTCC 59.859 63.158 0.00 0.00 0.00 3.13
650 4693 1.304713 TCGTCGCCTACCCTTTCCT 60.305 57.895 0.00 0.00 0.00 3.36
651 4694 0.901580 TCGTCGCCTACCCTTTCCTT 60.902 55.000 0.00 0.00 0.00 3.36
652 4695 0.459759 CGTCGCCTACCCTTTCCTTC 60.460 60.000 0.00 0.00 0.00 3.46
653 4696 0.107800 GTCGCCTACCCTTTCCTTCC 60.108 60.000 0.00 0.00 0.00 3.46
654 4697 1.153429 CGCCTACCCTTTCCTTCCG 60.153 63.158 0.00 0.00 0.00 4.30
658 4701 0.178301 CTACCCTTTCCTTCCGCCTC 59.822 60.000 0.00 0.00 0.00 4.70
849 4919 1.923148 GGGGGAGGAATCCTTTTCTCA 59.077 52.381 2.09 0.00 38.99 3.27
907 4980 4.101448 CGCCTCCTTCCCCCTGTG 62.101 72.222 0.00 0.00 0.00 3.66
911 4984 2.121506 TCCTTCCCCCTGTGCCTT 60.122 61.111 0.00 0.00 0.00 4.35
934 5018 0.681243 GCCGCTGGATCCTTTTCCTT 60.681 55.000 14.23 0.00 36.68 3.36
943 5027 3.055819 GGATCCTTTTCCTTGCCTTTTCC 60.056 47.826 3.84 0.00 32.68 3.13
985 5069 2.670148 GGGGACGGCCTCTTGTGAT 61.670 63.158 7.57 0.00 0.00 3.06
992 5076 2.290260 ACGGCCTCTTGTGATTGATTCA 60.290 45.455 0.00 0.00 0.00 2.57
1100 5202 3.274586 CGACGACGATAGCCCCGA 61.275 66.667 0.00 0.00 42.66 5.14
1521 5638 0.750911 GCCATTGCCTTCCTCCTCTG 60.751 60.000 0.00 0.00 0.00 3.35
1522 5639 0.622665 CCATTGCCTTCCTCCTCTGT 59.377 55.000 0.00 0.00 0.00 3.41
1523 5640 1.005215 CCATTGCCTTCCTCCTCTGTT 59.995 52.381 0.00 0.00 0.00 3.16
1524 5641 2.363683 CATTGCCTTCCTCCTCTGTTC 58.636 52.381 0.00 0.00 0.00 3.18
1525 5642 1.734655 TTGCCTTCCTCCTCTGTTCT 58.265 50.000 0.00 0.00 0.00 3.01
1535 5652 0.108233 CCTCTGTTCTGCTCTGCTCC 60.108 60.000 0.00 0.00 0.00 4.70
1546 5663 1.606737 GCTCTGCTCCGTTCTGTTCTT 60.607 52.381 0.00 0.00 0.00 2.52
1629 5748 3.952799 GAGGGGGAAGGAGTGGGCT 62.953 68.421 0.00 0.00 0.00 5.19
1650 5769 4.504916 CAGCTCCTCTCGGTGGCG 62.505 72.222 0.00 0.00 36.07 5.69
1773 5892 3.827898 CTCCTCGTCCTCGGCACC 61.828 72.222 0.00 0.00 37.69 5.01
1826 5945 1.213013 CGTACCTGAGCTGCTTCGT 59.787 57.895 2.53 3.03 0.00 3.85
1907 6026 1.741732 CGCCTCCATCAAAGGTCAGAG 60.742 57.143 0.00 0.00 36.21 3.35
1908 6027 1.556911 GCCTCCATCAAAGGTCAGAGA 59.443 52.381 0.00 0.00 36.21 3.10
1909 6028 2.679349 GCCTCCATCAAAGGTCAGAGAC 60.679 54.545 0.00 0.00 36.21 3.36
2195 6345 1.901833 GGTGAAAAGGGGCAATGATGT 59.098 47.619 0.00 0.00 0.00 3.06
2310 6466 3.453679 GCTTCCTCCGGCGTCTCT 61.454 66.667 6.01 0.00 0.00 3.10
2366 6522 2.829914 CATGGCCATGGTCCGTGG 60.830 66.667 34.31 24.15 42.95 4.94
2367 6523 3.014538 ATGGCCATGGTCCGTGGA 61.015 61.111 31.24 13.68 42.73 4.02
2369 6525 4.489771 GGCCATGGTCCGTGGAGG 62.490 72.222 31.24 7.91 42.73 4.30
2370 6526 4.489771 GCCATGGTCCGTGGAGGG 62.490 72.222 31.24 7.54 42.73 4.30
2371 6527 3.797353 CCATGGTCCGTGGAGGGG 61.797 72.222 24.17 0.00 42.73 4.79
2372 6528 3.009115 CATGGTCCGTGGAGGGGT 61.009 66.667 2.78 0.00 41.52 4.95
2373 6529 3.009115 ATGGTCCGTGGAGGGGTG 61.009 66.667 0.00 0.00 41.52 4.61
2378 6534 3.246112 CCGTGGAGGGGTGGTTGA 61.246 66.667 0.00 0.00 35.97 3.18
2379 6535 2.824880 CCGTGGAGGGGTGGTTGAA 61.825 63.158 0.00 0.00 35.97 2.69
2380 6536 1.599797 CGTGGAGGGGTGGTTGAAC 60.600 63.158 0.00 0.00 0.00 3.18
2381 6537 1.534697 GTGGAGGGGTGGTTGAACA 59.465 57.895 0.00 0.00 0.00 3.18
2382 6538 0.537371 GTGGAGGGGTGGTTGAACAG 60.537 60.000 0.00 0.00 0.00 3.16
2384 6540 1.423794 GGAGGGGTGGTTGAACAGGA 61.424 60.000 0.00 0.00 0.00 3.86
2386 6542 1.228459 GGGGTGGTTGAACAGGACC 60.228 63.158 0.00 0.00 36.45 4.46
2390 6546 2.073716 TGGTTGAACAGGACCCCGT 61.074 57.895 0.00 0.00 34.99 5.28
2391 6547 1.599797 GGTTGAACAGGACCCCGTG 60.600 63.158 0.00 0.00 0.00 4.94
2392 6548 1.599797 GTTGAACAGGACCCCGTGG 60.600 63.158 0.00 0.00 37.80 4.94
2393 6549 1.766864 TTGAACAGGACCCCGTGGA 60.767 57.895 0.00 0.00 34.81 4.02
2395 6551 1.911766 GAACAGGACCCCGTGGAGA 60.912 63.158 0.00 0.00 34.81 3.71
2396 6552 1.889530 GAACAGGACCCCGTGGAGAG 61.890 65.000 0.00 0.00 34.81 3.20
2404 6560 3.322466 CCGTGGAGAGGGCTGGTT 61.322 66.667 0.00 0.00 0.00 3.67
2405 6561 2.046892 CGTGGAGAGGGCTGGTTG 60.047 66.667 0.00 0.00 0.00 3.77
2406 6562 2.583441 CGTGGAGAGGGCTGGTTGA 61.583 63.158 0.00 0.00 0.00 3.18
2408 6564 0.606673 GTGGAGAGGGCTGGTTGAAC 60.607 60.000 0.00 0.00 0.00 3.18
2409 6565 1.059584 TGGAGAGGGCTGGTTGAACA 61.060 55.000 0.00 0.00 0.00 3.18
2410 6566 0.322008 GGAGAGGGCTGGTTGAACAG 60.322 60.000 0.00 0.00 41.41 3.16
2411 6567 0.398318 GAGAGGGCTGGTTGAACAGT 59.602 55.000 0.00 0.00 40.59 3.55
2412 6568 1.623811 GAGAGGGCTGGTTGAACAGTA 59.376 52.381 0.00 0.00 40.59 2.74
2413 6569 1.625818 AGAGGGCTGGTTGAACAGTAG 59.374 52.381 0.00 0.00 40.59 2.57
2414 6570 0.036875 AGGGCTGGTTGAACAGTAGC 59.963 55.000 9.12 9.12 40.59 3.58
2415 6571 2.556286 GGCTGGTTGAACAGTAGCC 58.444 57.895 17.42 17.42 46.04 3.93
2416 6572 1.298859 GGCTGGTTGAACAGTAGCCG 61.299 60.000 17.42 0.00 43.76 5.52
2417 6573 1.298859 GCTGGTTGAACAGTAGCCGG 61.299 60.000 0.00 0.00 40.59 6.13
2418 6574 0.034896 CTGGTTGAACAGTAGCCGGT 59.965 55.000 1.90 0.00 33.81 5.28
2419 6575 0.250124 TGGTTGAACAGTAGCCGGTG 60.250 55.000 1.90 0.00 0.00 4.94
2420 6576 0.953960 GGTTGAACAGTAGCCGGTGG 60.954 60.000 1.90 0.00 0.00 4.61
2421 6577 0.034337 GTTGAACAGTAGCCGGTGGA 59.966 55.000 1.90 0.00 0.00 4.02
2422 6578 0.320374 TTGAACAGTAGCCGGTGGAG 59.680 55.000 1.90 0.00 0.00 3.86
2423 6579 1.218316 GAACAGTAGCCGGTGGAGG 59.782 63.158 1.90 0.00 0.00 4.30
2424 6580 1.229082 AACAGTAGCCGGTGGAGGA 60.229 57.895 1.90 0.00 0.00 3.71
2425 6581 1.258445 AACAGTAGCCGGTGGAGGAG 61.258 60.000 1.90 0.00 0.00 3.69
2426 6582 2.760385 AGTAGCCGGTGGAGGAGC 60.760 66.667 1.90 0.00 0.00 4.70
2427 6583 4.208686 GTAGCCGGTGGAGGAGCG 62.209 72.222 1.90 0.00 45.41 5.03
2433 6589 3.775654 GGTGGAGGAGCGGTGGAG 61.776 72.222 0.00 0.00 0.00 3.86
2434 6590 3.775654 GTGGAGGAGCGGTGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
2437 6593 2.442272 GAGGAGCGGTGGAGGCTA 60.442 66.667 0.00 0.00 41.72 3.93
2438 6594 2.443016 AGGAGCGGTGGAGGCTAG 60.443 66.667 0.00 0.00 41.72 3.42
2439 6595 2.442272 GGAGCGGTGGAGGCTAGA 60.442 66.667 0.00 0.00 41.72 2.43
2440 6596 1.834822 GGAGCGGTGGAGGCTAGAT 60.835 63.158 0.00 0.00 41.72 1.98
2441 6597 1.365633 GAGCGGTGGAGGCTAGATG 59.634 63.158 0.00 0.00 41.72 2.90
2442 6598 1.075970 AGCGGTGGAGGCTAGATGA 60.076 57.895 0.00 0.00 39.39 2.92
2443 6599 0.687757 AGCGGTGGAGGCTAGATGAA 60.688 55.000 0.00 0.00 39.39 2.57
2444 6600 0.530870 GCGGTGGAGGCTAGATGAAC 60.531 60.000 0.00 0.00 0.00 3.18
2445 6601 0.824109 CGGTGGAGGCTAGATGAACA 59.176 55.000 0.00 0.00 0.00 3.18
2446 6602 1.414181 CGGTGGAGGCTAGATGAACAT 59.586 52.381 0.00 0.00 0.00 2.71
2447 6603 2.804572 CGGTGGAGGCTAGATGAACATG 60.805 54.545 0.00 0.00 0.00 3.21
2448 6604 2.435805 GGTGGAGGCTAGATGAACATGA 59.564 50.000 0.00 0.00 0.00 3.07
2449 6605 3.494048 GGTGGAGGCTAGATGAACATGAG 60.494 52.174 0.00 0.00 0.00 2.90
2450 6606 3.133721 GTGGAGGCTAGATGAACATGAGT 59.866 47.826 0.00 0.00 0.00 3.41
2451 6607 3.386078 TGGAGGCTAGATGAACATGAGTC 59.614 47.826 0.00 0.00 0.00 3.36
2452 6608 3.244044 GGAGGCTAGATGAACATGAGTCC 60.244 52.174 0.00 0.00 0.00 3.85
2453 6609 2.363680 AGGCTAGATGAACATGAGTCCG 59.636 50.000 0.00 0.00 0.00 4.79
2454 6610 2.101582 GGCTAGATGAACATGAGTCCGT 59.898 50.000 0.00 0.00 0.00 4.69
2455 6611 3.119291 GCTAGATGAACATGAGTCCGTG 58.881 50.000 0.00 0.00 35.46 4.94
2458 6614 2.768527 AGATGAACATGAGTCCGTGGAT 59.231 45.455 0.00 0.00 33.64 3.41
2468 6624 0.175989 GTCCGTGGATGAGAAGGGTC 59.824 60.000 0.00 0.00 0.00 4.46
2481 6637 1.915078 AAGGGTCCATTCGCCTCAGG 61.915 60.000 0.00 0.00 0.00 3.86
2510 6666 0.975040 CAGCCAGTAGGAGGAGCTGT 60.975 60.000 0.00 0.00 44.59 4.40
2511 6667 0.975040 AGCCAGTAGGAGGAGCTGTG 60.975 60.000 0.00 0.00 36.89 3.66
2564 6727 3.128465 GCTGCTGCTAATTTCTGTCAC 57.872 47.619 8.53 0.00 36.03 3.67
2583 6747 2.290745 CCCCCTAGCCTTAGCCCT 59.709 66.667 0.00 0.00 41.25 5.19
2584 6748 1.386057 CCCCCTAGCCTTAGCCCTT 60.386 63.158 0.00 0.00 41.25 3.95
2585 6749 0.994050 CCCCCTAGCCTTAGCCCTTT 60.994 60.000 0.00 0.00 41.25 3.11
2763 6943 2.183679 AGGCTGTGTAAAGAGGAGAGG 58.816 52.381 0.00 0.00 0.00 3.69
2764 6944 1.903183 GGCTGTGTAAAGAGGAGAGGT 59.097 52.381 0.00 0.00 0.00 3.85
2774 6954 5.789574 AAAGAGGAGAGGTAGAGAGAGAA 57.210 43.478 0.00 0.00 0.00 2.87
2777 6957 4.788617 AGAGGAGAGGTAGAGAGAGAAAGT 59.211 45.833 0.00 0.00 0.00 2.66
2780 7006 4.204799 GAGAGGTAGAGAGAGAAAGTCCC 58.795 52.174 0.00 0.00 0.00 4.46
2852 7078 4.819088 AGTGAGGTGAAAAGAAAAGAGAGC 59.181 41.667 0.00 0.00 0.00 4.09
2922 7153 2.004017 CCTTTGTGTACGTGTGTGTGT 58.996 47.619 0.00 0.00 0.00 3.72
2923 7154 2.417239 CCTTTGTGTACGTGTGTGTGTT 59.583 45.455 0.00 0.00 0.00 3.32
2929 7160 3.803231 GTGTACGTGTGTGTGTTTGGATA 59.197 43.478 0.00 0.00 0.00 2.59
2949 7180 2.202810 GTGCGAGCTAGCTGGACC 60.203 66.667 28.59 14.37 38.13 4.46
2950 7181 2.363018 TGCGAGCTAGCTGGACCT 60.363 61.111 28.59 0.58 38.13 3.85
3000 7243 6.211584 ACTCCATCAGTGACAAGTAATACAGT 59.788 38.462 0.00 0.00 32.26 3.55
3001 7244 7.396339 ACTCCATCAGTGACAAGTAATACAGTA 59.604 37.037 0.00 0.00 32.26 2.74
3002 7245 7.544622 TCCATCAGTGACAAGTAATACAGTAC 58.455 38.462 0.00 0.00 0.00 2.73
3003 7246 6.472486 CCATCAGTGACAAGTAATACAGTACG 59.528 42.308 0.00 0.00 0.00 3.67
3004 7247 6.564709 TCAGTGACAAGTAATACAGTACGT 57.435 37.500 0.00 0.00 0.00 3.57
3052 7295 2.281539 TATGATGATGGCCTGCTTGG 57.718 50.000 3.32 0.00 39.35 3.61
3056 7299 1.610554 ATGATGGCCTGCTTGGTTGC 61.611 55.000 3.32 0.00 38.35 4.17
3058 7301 3.534704 ATGGCCTGCTTGGTTGCCT 62.535 57.895 3.32 0.00 44.32 4.75
3059 7302 2.919328 GGCCTGCTTGGTTGCCTT 60.919 61.111 0.00 0.00 40.77 4.35
3061 7304 2.341176 CCTGCTTGGTTGCCTTGC 59.659 61.111 0.00 0.00 0.00 4.01
3128 7382 1.996191 GAGATGCCGAAACAGACTGTC 59.004 52.381 8.93 0.00 0.00 3.51
3130 7384 0.687354 ATGCCGAAACAGACTGTCCT 59.313 50.000 8.93 0.00 0.00 3.85
3267 7525 2.067091 ATTCTCATGCGGCCATTGCG 62.067 55.000 2.24 0.00 38.85 4.85
3268 7526 4.918129 CTCATGCGGCCATTGCGC 62.918 66.667 2.24 0.00 38.85 6.09
3333 7592 1.444119 TTGCTGTTCTTGCGGTGTCC 61.444 55.000 0.00 0.00 0.00 4.02
3369 7636 4.256920 CCTCTCTGAACCCACTGTATTTG 58.743 47.826 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 2475 8.312564 GGTACTTACACTGAGACTTTTAGGATT 58.687 37.037 0.00 0.00 0.00 3.01
39 2498 6.919775 ATGAGGTACTTACACTGAGACTTT 57.080 37.500 0.00 0.00 41.55 2.66
56 2515 6.515512 ACTAAGGGCACAATTATATGAGGT 57.484 37.500 0.00 0.00 0.00 3.85
64 2523 8.927675 TCTAAAAAGAACTAAGGGCACAATTA 57.072 30.769 0.00 0.00 0.00 1.40
126 2588 4.938226 GGTCTTTGGTATTGAGAGAACAGG 59.062 45.833 0.00 0.00 0.00 4.00
132 2594 3.933332 GGTTCGGTCTTTGGTATTGAGAG 59.067 47.826 0.00 0.00 0.00 3.20
134 2596 3.670625 TGGTTCGGTCTTTGGTATTGAG 58.329 45.455 0.00 0.00 0.00 3.02
155 2617 5.080969 TCTATTCGGTTCTCGGTCAATTT 57.919 39.130 0.00 0.00 39.77 1.82
192 2654 8.519799 TCTAAAAAGTCAGTCTTCCACATTTT 57.480 30.769 0.00 0.00 35.02 1.82
194 2656 7.993183 TCTTCTAAAAAGTCAGTCTTCCACATT 59.007 33.333 0.00 0.00 35.02 2.71
197 2679 6.203145 GGTCTTCTAAAAAGTCAGTCTTCCAC 59.797 42.308 0.00 0.00 35.02 4.02
215 2697 3.128938 CGGTCTAGTCATTTCGGTCTTCT 59.871 47.826 0.00 0.00 0.00 2.85
253 2744 6.017192 TCCCTCCATCTACATGTATAAGTCC 58.983 44.000 5.91 0.00 0.00 3.85
348 2839 8.581578 TGAAGTTGTGTGTATCTGTATCTTGTA 58.418 33.333 0.00 0.00 0.00 2.41
379 2870 3.868888 GAGCGTATCTCTGCATTTTCC 57.131 47.619 0.00 0.00 38.78 3.13
401 2894 1.340889 CCCATGATGCCGGTTTTATGG 59.659 52.381 17.35 17.35 35.88 2.74
408 2901 1.762708 CTTTAACCCATGATGCCGGT 58.237 50.000 1.90 0.00 0.00 5.28
415 2908 7.442969 CGTAATAATACCAGCTTTAACCCATGA 59.557 37.037 0.00 0.00 0.00 3.07
421 2923 6.704937 AGGCTCGTAATAATACCAGCTTTAAC 59.295 38.462 7.38 0.00 43.36 2.01
462 2964 2.936202 AGCATTGCCGTATTCCTGAAT 58.064 42.857 4.70 0.00 34.93 2.57
463 2965 2.418368 AGCATTGCCGTATTCCTGAA 57.582 45.000 4.70 0.00 0.00 3.02
495 2997 3.181490 TGACCGGATCTTGAACGTATCTG 60.181 47.826 9.46 0.00 0.00 2.90
497 2999 3.114065 GTGACCGGATCTTGAACGTATC 58.886 50.000 9.46 0.00 0.00 2.24
530 3032 2.125673 GTGCATACTGGTCGCCGT 60.126 61.111 0.00 0.00 0.00 5.68
531 3033 2.601628 TACGTGCATACTGGTCGCCG 62.602 60.000 0.00 0.00 0.00 6.46
533 3035 0.099968 TCTACGTGCATACTGGTCGC 59.900 55.000 0.00 0.00 0.00 5.19
534 3036 1.823828 GTCTACGTGCATACTGGTCG 58.176 55.000 0.00 0.00 0.00 4.79
535 3037 1.399440 TCGTCTACGTGCATACTGGTC 59.601 52.381 0.00 0.00 40.80 4.02
540 3044 0.770590 CGCATCGTCTACGTGCATAC 59.229 55.000 21.14 0.00 42.24 2.39
554 3058 6.316035 GGGTGTACCTACGTACTACGCATC 62.316 54.167 8.55 0.00 44.48 3.91
570 3074 0.475044 TTGTCCAGTTGGGGGTGTAC 59.525 55.000 0.00 0.00 37.22 2.90
576 3080 0.178992 TCTGCTTTGTCCAGTTGGGG 60.179 55.000 0.00 0.00 37.22 4.96
586 4607 0.034059 CTGGACGGACTCTGCTTTGT 59.966 55.000 0.00 0.00 0.00 2.83
590 4611 3.386237 GGCTGGACGGACTCTGCT 61.386 66.667 0.00 0.00 0.00 4.24
592 4613 2.575993 CTGGCTGGACGGACTCTG 59.424 66.667 0.00 0.00 0.00 3.35
594 4615 3.655810 CTGCTGGCTGGACGGACTC 62.656 68.421 0.00 0.00 0.00 3.36
641 4684 1.539124 AGAGGCGGAAGGAAAGGGT 60.539 57.895 0.00 0.00 0.00 4.34
642 4685 1.222113 GAGAGGCGGAAGGAAAGGG 59.778 63.158 0.00 0.00 0.00 3.95
643 4686 1.222113 GGAGAGGCGGAAGGAAAGG 59.778 63.158 0.00 0.00 0.00 3.11
644 4687 1.153549 CGGAGAGGCGGAAGGAAAG 60.154 63.158 0.00 0.00 0.00 2.62
645 4688 2.978824 CGGAGAGGCGGAAGGAAA 59.021 61.111 0.00 0.00 0.00 3.13
658 4701 4.704833 CCAGTGGTGGTGGCGGAG 62.705 72.222 0.00 0.00 39.30 4.63
733 4776 1.975680 TGGGAAGTTGAGGTGTAGGTC 59.024 52.381 0.00 0.00 0.00 3.85
849 4919 0.253327 GGAGGAGGCGGAACAGAAAT 59.747 55.000 0.00 0.00 0.00 2.17
921 5005 3.055819 GGAAAAGGCAAGGAAAAGGATCC 60.056 47.826 2.48 2.48 39.96 3.36
934 5018 2.703536 GGGAAAAAGGAAGGAAAAGGCA 59.296 45.455 0.00 0.00 0.00 4.75
943 5027 1.595093 ATGCGCGGGGAAAAAGGAAG 61.595 55.000 8.83 0.00 0.00 3.46
985 5069 1.505807 CCATTGGCGCGTGAATCAA 59.494 52.632 8.43 5.74 0.00 2.57
1140 5242 2.438614 CGGTCGAGGAGCAGGAGA 60.439 66.667 0.00 0.00 0.00 3.71
1213 5324 3.314331 CAGCTCCTCACCCCACGT 61.314 66.667 0.00 0.00 0.00 4.49
1218 5329 2.680352 TCGTCCAGCTCCTCACCC 60.680 66.667 0.00 0.00 0.00 4.61
1221 5332 1.979155 CCACTCGTCCAGCTCCTCA 60.979 63.158 0.00 0.00 0.00 3.86
1521 5638 0.037790 AGAACGGAGCAGAGCAGAAC 60.038 55.000 0.00 0.00 0.00 3.01
1522 5639 0.037882 CAGAACGGAGCAGAGCAGAA 60.038 55.000 0.00 0.00 0.00 3.02
1523 5640 1.181741 ACAGAACGGAGCAGAGCAGA 61.182 55.000 0.00 0.00 0.00 4.26
1524 5641 0.320247 AACAGAACGGAGCAGAGCAG 60.320 55.000 0.00 0.00 0.00 4.24
1525 5642 0.319900 GAACAGAACGGAGCAGAGCA 60.320 55.000 0.00 0.00 0.00 4.26
1535 5652 3.788797 GCACCACAGAAAAGAACAGAACG 60.789 47.826 0.00 0.00 0.00 3.95
1546 5663 1.300620 CTCGACGGCACCACAGAAA 60.301 57.895 0.00 0.00 0.00 2.52
1773 5892 1.579698 CGATCATCTGCCACTTGAGG 58.420 55.000 0.00 0.00 0.00 3.86
1907 6026 0.392595 GGTGGAACGGGAGAATGGTC 60.393 60.000 0.00 0.00 38.12 4.02
1908 6027 1.683441 GGTGGAACGGGAGAATGGT 59.317 57.895 0.00 0.00 38.12 3.55
1909 6028 1.077716 GGGTGGAACGGGAGAATGG 60.078 63.158 0.00 0.00 38.12 3.16
1912 6031 1.540367 ATGGGGTGGAACGGGAGAA 60.540 57.895 0.00 0.00 38.12 2.87
1913 6032 1.993391 GATGGGGTGGAACGGGAGA 60.993 63.158 0.00 0.00 38.12 3.71
2195 6345 2.935238 GCCACGGAGAAGAGCATTTACA 60.935 50.000 0.00 0.00 0.00 2.41
2356 6512 3.009115 CACCCCTCCACGGACCAT 61.009 66.667 0.00 0.00 33.16 3.55
2360 6516 3.246112 CAACCACCCCTCCACGGA 61.246 66.667 0.00 0.00 33.16 4.69
2362 6518 1.599797 GTTCAACCACCCCTCCACG 60.600 63.158 0.00 0.00 0.00 4.94
2363 6519 0.537371 CTGTTCAACCACCCCTCCAC 60.537 60.000 0.00 0.00 0.00 4.02
2364 6520 1.715019 CCTGTTCAACCACCCCTCCA 61.715 60.000 0.00 0.00 0.00 3.86
2366 6522 0.250770 GTCCTGTTCAACCACCCCTC 60.251 60.000 0.00 0.00 0.00 4.30
2367 6523 1.716028 GGTCCTGTTCAACCACCCCT 61.716 60.000 0.00 0.00 35.53 4.79
2369 6525 1.228459 GGGTCCTGTTCAACCACCC 60.228 63.158 4.12 4.12 40.12 4.61
2370 6526 1.228459 GGGGTCCTGTTCAACCACC 60.228 63.158 0.00 0.00 37.28 4.61
2371 6527 1.599797 CGGGGTCCTGTTCAACCAC 60.600 63.158 0.00 0.00 37.28 4.16
2372 6528 2.073716 ACGGGGTCCTGTTCAACCA 61.074 57.895 0.00 0.00 37.28 3.67
2373 6529 1.599797 CACGGGGTCCTGTTCAACC 60.600 63.158 0.00 0.00 32.44 3.77
2374 6530 1.599797 CCACGGGGTCCTGTTCAAC 60.600 63.158 0.00 0.00 32.44 3.18
2375 6531 1.764571 CTCCACGGGGTCCTGTTCAA 61.765 60.000 2.12 0.00 32.44 2.69
2378 6534 1.913762 CTCTCCACGGGGTCCTGTT 60.914 63.158 2.12 0.00 32.44 3.16
2379 6535 2.283966 CTCTCCACGGGGTCCTGT 60.284 66.667 2.12 0.00 35.66 4.00
2380 6536 3.077556 CCTCTCCACGGGGTCCTG 61.078 72.222 2.12 0.00 34.93 3.86
2381 6537 4.400251 CCCTCTCCACGGGGTCCT 62.400 72.222 2.12 0.00 38.08 3.85
2390 6546 1.059584 TGTTCAACCAGCCCTCTCCA 61.060 55.000 0.00 0.00 0.00 3.86
2391 6547 0.322008 CTGTTCAACCAGCCCTCTCC 60.322 60.000 0.00 0.00 0.00 3.71
2392 6548 0.398318 ACTGTTCAACCAGCCCTCTC 59.602 55.000 0.00 0.00 35.83 3.20
2393 6549 1.625818 CTACTGTTCAACCAGCCCTCT 59.374 52.381 0.00 0.00 35.83 3.69
2395 6551 0.036875 GCTACTGTTCAACCAGCCCT 59.963 55.000 0.00 0.00 35.83 5.19
2396 6552 0.960861 GGCTACTGTTCAACCAGCCC 60.961 60.000 12.02 0.00 44.93 5.19
2399 6555 0.034896 ACCGGCTACTGTTCAACCAG 59.965 55.000 0.00 0.00 38.45 4.00
2400 6556 0.250124 CACCGGCTACTGTTCAACCA 60.250 55.000 0.00 0.00 0.00 3.67
2401 6557 0.953960 CCACCGGCTACTGTTCAACC 60.954 60.000 0.00 0.00 0.00 3.77
2402 6558 0.034337 TCCACCGGCTACTGTTCAAC 59.966 55.000 0.00 0.00 0.00 3.18
2404 6560 1.541310 CCTCCACCGGCTACTGTTCA 61.541 60.000 0.00 0.00 0.00 3.18
2405 6561 1.218316 CCTCCACCGGCTACTGTTC 59.782 63.158 0.00 0.00 0.00 3.18
2406 6562 1.229082 TCCTCCACCGGCTACTGTT 60.229 57.895 0.00 0.00 0.00 3.16
2408 6564 3.082579 GCTCCTCCACCGGCTACTG 62.083 68.421 0.00 0.00 0.00 2.74
2409 6565 2.760385 GCTCCTCCACCGGCTACT 60.760 66.667 0.00 0.00 0.00 2.57
2410 6566 4.208686 CGCTCCTCCACCGGCTAC 62.209 72.222 0.00 0.00 0.00 3.58
2416 6572 3.775654 CTCCACCGCTCCTCCACC 61.776 72.222 0.00 0.00 0.00 4.61
2417 6573 3.775654 CCTCCACCGCTCCTCCAC 61.776 72.222 0.00 0.00 0.00 4.02
2420 6576 2.442272 TAGCCTCCACCGCTCCTC 60.442 66.667 0.00 0.00 37.79 3.71
2421 6577 2.305314 ATCTAGCCTCCACCGCTCCT 62.305 60.000 0.00 0.00 37.79 3.69
2422 6578 1.834822 ATCTAGCCTCCACCGCTCC 60.835 63.158 0.00 0.00 37.79 4.70
2423 6579 1.109920 TCATCTAGCCTCCACCGCTC 61.110 60.000 0.00 0.00 37.79 5.03
2424 6580 0.687757 TTCATCTAGCCTCCACCGCT 60.688 55.000 0.00 0.00 40.45 5.52
2425 6581 0.530870 GTTCATCTAGCCTCCACCGC 60.531 60.000 0.00 0.00 0.00 5.68
2426 6582 0.824109 TGTTCATCTAGCCTCCACCG 59.176 55.000 0.00 0.00 0.00 4.94
2427 6583 2.435805 TCATGTTCATCTAGCCTCCACC 59.564 50.000 0.00 0.00 0.00 4.61
2428 6584 3.133721 ACTCATGTTCATCTAGCCTCCAC 59.866 47.826 0.00 0.00 0.00 4.02
2429 6585 3.378512 ACTCATGTTCATCTAGCCTCCA 58.621 45.455 0.00 0.00 0.00 3.86
2430 6586 3.244044 GGACTCATGTTCATCTAGCCTCC 60.244 52.174 0.00 0.00 0.00 4.30
2431 6587 3.551863 CGGACTCATGTTCATCTAGCCTC 60.552 52.174 0.00 0.00 0.00 4.70
2432 6588 2.363680 CGGACTCATGTTCATCTAGCCT 59.636 50.000 0.00 0.00 0.00 4.58
2433 6589 2.101582 ACGGACTCATGTTCATCTAGCC 59.898 50.000 0.00 0.00 0.00 3.93
2434 6590 3.119291 CACGGACTCATGTTCATCTAGC 58.881 50.000 0.00 0.00 0.00 3.42
2435 6591 3.381590 TCCACGGACTCATGTTCATCTAG 59.618 47.826 0.00 0.00 0.00 2.43
2436 6592 3.361786 TCCACGGACTCATGTTCATCTA 58.638 45.455 0.00 0.00 0.00 1.98
2437 6593 2.179427 TCCACGGACTCATGTTCATCT 58.821 47.619 0.00 0.00 0.00 2.90
2438 6594 2.672961 TCCACGGACTCATGTTCATC 57.327 50.000 0.00 0.00 0.00 2.92
2439 6595 2.501316 TCATCCACGGACTCATGTTCAT 59.499 45.455 0.00 0.00 0.00 2.57
2440 6596 1.899142 TCATCCACGGACTCATGTTCA 59.101 47.619 0.00 0.00 0.00 3.18
2441 6597 2.166459 TCTCATCCACGGACTCATGTTC 59.834 50.000 0.00 0.00 0.00 3.18
2442 6598 2.179427 TCTCATCCACGGACTCATGTT 58.821 47.619 0.00 0.00 0.00 2.71
2443 6599 1.852633 TCTCATCCACGGACTCATGT 58.147 50.000 0.00 0.00 0.00 3.21
2444 6600 2.482664 CCTTCTCATCCACGGACTCATG 60.483 54.545 0.00 0.00 0.00 3.07
2445 6601 1.759445 CCTTCTCATCCACGGACTCAT 59.241 52.381 0.00 0.00 0.00 2.90
2446 6602 1.186200 CCTTCTCATCCACGGACTCA 58.814 55.000 0.00 0.00 0.00 3.41
2447 6603 0.461961 CCCTTCTCATCCACGGACTC 59.538 60.000 0.00 0.00 0.00 3.36
2448 6604 0.252284 ACCCTTCTCATCCACGGACT 60.252 55.000 0.00 0.00 0.00 3.85
2449 6605 0.175989 GACCCTTCTCATCCACGGAC 59.824 60.000 0.00 0.00 0.00 4.79
2450 6606 0.976073 GGACCCTTCTCATCCACGGA 60.976 60.000 0.00 0.00 32.35 4.69
2451 6607 1.264749 TGGACCCTTCTCATCCACGG 61.265 60.000 0.00 0.00 37.60 4.94
2452 6608 0.833287 ATGGACCCTTCTCATCCACG 59.167 55.000 0.00 0.00 45.15 4.94
2453 6609 2.743183 CGAATGGACCCTTCTCATCCAC 60.743 54.545 7.77 0.00 45.15 4.02
2454 6610 1.486310 CGAATGGACCCTTCTCATCCA 59.514 52.381 7.77 0.00 46.36 3.41
2455 6611 1.811941 GCGAATGGACCCTTCTCATCC 60.812 57.143 7.77 0.00 0.00 3.51
2458 6614 0.909610 AGGCGAATGGACCCTTCTCA 60.910 55.000 7.77 0.00 0.00 3.27
2510 6666 2.229792 GAACTCCAGCCAACATTCACA 58.770 47.619 0.00 0.00 0.00 3.58
2511 6667 2.227388 CTGAACTCCAGCCAACATTCAC 59.773 50.000 0.00 0.00 35.89 3.18
2763 6943 3.093057 TGCTGGGACTTTCTCTCTCTAC 58.907 50.000 0.00 0.00 0.00 2.59
2764 6944 3.360867 CTGCTGGGACTTTCTCTCTCTA 58.639 50.000 0.00 0.00 0.00 2.43
2774 6954 1.270907 CAGTACTCCTGCTGGGACTT 58.729 55.000 10.07 0.00 39.58 3.01
2794 7020 1.731160 GAGCTCTTTGCAGCAGTAGTG 59.269 52.381 6.43 0.00 45.94 2.74
2795 7021 1.622811 AGAGCTCTTTGCAGCAGTAGT 59.377 47.619 11.45 0.00 45.94 2.73
2796 7022 2.270047 GAGAGCTCTTTGCAGCAGTAG 58.730 52.381 19.36 0.00 45.94 2.57
2852 7078 2.161855 TCATGCCTAGGCTTTGTTGTG 58.838 47.619 33.07 18.72 42.51 3.33
2899 7130 2.933906 ACACACACGTACACAAAGGAAG 59.066 45.455 0.00 0.00 0.00 3.46
2900 7131 2.673862 CACACACACGTACACAAAGGAA 59.326 45.455 0.00 0.00 0.00 3.36
2902 7133 2.004017 ACACACACACGTACACAAAGG 58.996 47.619 0.00 0.00 0.00 3.11
2907 7138 2.001159 TCCAAACACACACACGTACAC 58.999 47.619 0.00 0.00 0.00 2.90
2908 7139 2.381725 TCCAAACACACACACGTACA 57.618 45.000 0.00 0.00 0.00 2.90
2912 7143 2.869801 ACACTATCCAAACACACACACG 59.130 45.455 0.00 0.00 0.00 4.49
2922 7153 2.738643 GCTAGCTCGCACACTATCCAAA 60.739 50.000 7.70 0.00 0.00 3.28
2923 7154 1.202417 GCTAGCTCGCACACTATCCAA 60.202 52.381 7.70 0.00 0.00 3.53
2929 7160 1.979155 TCCAGCTAGCTCGCACACT 60.979 57.895 16.15 0.00 0.00 3.55
2949 7180 4.065088 CAGAAGAGGACGAGAGGATAGAG 58.935 52.174 0.00 0.00 0.00 2.43
2950 7181 3.181449 CCAGAAGAGGACGAGAGGATAGA 60.181 52.174 0.00 0.00 0.00 1.98
3052 7295 1.662044 CCAACAGAGGCAAGGCAAC 59.338 57.895 0.00 0.00 0.00 4.17
3056 7299 0.038744 ATGACCCAACAGAGGCAAGG 59.961 55.000 0.00 0.00 0.00 3.61
3058 7301 0.895100 GCATGACCCAACAGAGGCAA 60.895 55.000 0.00 0.00 0.00 4.52
3059 7302 1.303561 GCATGACCCAACAGAGGCA 60.304 57.895 0.00 0.00 0.00 4.75
3061 7304 0.033796 ATGGCATGACCCAACAGAGG 60.034 55.000 0.00 0.00 38.61 3.69
3128 7382 1.456518 TCGCAGATGAGGGGAGAGG 60.457 63.158 0.00 0.00 0.00 3.69
3130 7384 2.130426 GCTCGCAGATGAGGGGAGA 61.130 63.158 10.18 0.00 45.23 3.71
3309 7567 1.359833 CGCAAGAACAGCAAGCCAA 59.640 52.632 0.00 0.00 43.02 4.52
3345 7604 0.838122 ACAGTGGGTTCAGAGAGGGG 60.838 60.000 0.00 0.00 0.00 4.79
3369 7636 1.224592 CCTGATGCCACTACCACCC 59.775 63.158 0.00 0.00 0.00 4.61
3373 7640 1.027357 CATTGCCTGATGCCACTACC 58.973 55.000 0.00 0.00 40.16 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.