Multiple sequence alignment - TraesCS4B01G256600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G256600 chr4B 100.000 5922 0 0 1 5922 522337743 522331822 0.000000e+00 10936.0
1 TraesCS4B01G256600 chr4A 92.891 3390 155 39 1993 5359 38838840 38842166 0.000000e+00 4846.0
2 TraesCS4B01G256600 chr4A 86.571 2018 109 65 8 1926 38836903 38838857 0.000000e+00 2076.0
3 TraesCS4B01G256600 chr4D 92.330 3442 145 48 1993 5383 426521384 426518011 0.000000e+00 4783.0
4 TraesCS4B01G256600 chr4D 87.755 1225 40 40 3 1149 426523400 426522208 0.000000e+00 1330.0
5 TraesCS4B01G256600 chr4D 87.817 788 48 22 1181 1926 426522148 426521367 0.000000e+00 880.0
6 TraesCS4B01G256600 chr3A 87.719 513 45 8 5380 5883 435810752 435811255 3.080000e-162 582.0
7 TraesCS4B01G256600 chr1A 85.744 477 46 13 5418 5883 550452194 550451729 8.920000e-133 484.0
8 TraesCS4B01G256600 chr2D 91.071 336 20 6 5470 5797 288695451 288695118 4.210000e-121 446.0
9 TraesCS4B01G256600 chr6B 79.882 507 82 13 5385 5882 189132862 189133357 2.630000e-93 353.0
10 TraesCS4B01G256600 chr6B 91.753 97 7 1 4447 4543 684142582 684142677 3.720000e-27 134.0
11 TraesCS4B01G256600 chr1D 79.406 505 85 14 5385 5882 265698225 265697733 7.350000e-89 339.0
12 TraesCS4B01G256600 chr1D 84.026 313 45 4 5380 5689 253185478 253185788 4.490000e-76 296.0
13 TraesCS4B01G256600 chr1B 84.887 311 42 5 5380 5688 356425867 356426174 5.760000e-80 309.0
14 TraesCS4B01G256600 chr5B 80.818 391 64 9 5385 5768 685325003 685325389 4.490000e-76 296.0
15 TraesCS4B01G256600 chr3D 83.612 299 48 1 5389 5687 287337913 287337616 4.520000e-71 279.0
16 TraesCS4B01G256600 chr7D 83.978 181 19 4 5704 5883 62678481 62678652 1.320000e-36 165.0
17 TraesCS4B01G256600 chr6D 90.722 97 9 0 4447 4543 424179638 424179734 4.820000e-26 130.0
18 TraesCS4B01G256600 chr5A 90.722 97 9 0 4447 4543 430993856 430993952 4.820000e-26 130.0
19 TraesCS4B01G256600 chr5A 94.340 53 3 0 1926 1978 582093983 582093931 1.370000e-11 82.4
20 TraesCS4B01G256600 chr2B 90.722 97 8 1 4447 4543 695834936 695835031 1.730000e-25 128.0
21 TraesCS4B01G256600 chr2B 88.172 93 11 0 4447 4539 467928507 467928599 1.740000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G256600 chr4B 522331822 522337743 5921 True 10936 10936 100.000000 1 5922 1 chr4B.!!$R1 5921
1 TraesCS4B01G256600 chr4A 38836903 38842166 5263 False 3461 4846 89.731000 8 5359 2 chr4A.!!$F1 5351
2 TraesCS4B01G256600 chr4D 426518011 426523400 5389 True 2331 4783 89.300667 3 5383 3 chr4D.!!$R1 5380
3 TraesCS4B01G256600 chr3A 435810752 435811255 503 False 582 582 87.719000 5380 5883 1 chr3A.!!$F1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 329 0.038526 CCTCTTGTTGCGTACTCCGT 60.039 55.000 0.00 0.0 39.32 4.69 F
698 739 0.465705 GCGGAAGATCTCATCCACCA 59.534 55.000 12.88 0.0 33.57 4.17 F
699 740 1.134401 GCGGAAGATCTCATCCACCAA 60.134 52.381 12.88 0.0 33.57 3.67 F
734 779 1.197036 GGCGGATTAAGAAATAGCGGC 59.803 52.381 0.00 0.0 32.57 6.53 F
1274 1414 1.227002 GACGATGGGAGCGAAGTCC 60.227 63.158 0.00 0.0 35.64 3.85 F
1807 1998 1.450312 CAGCCTTGGTTAGAGCGGG 60.450 63.158 0.00 0.0 0.00 6.13 F
2927 3139 0.662619 CCAAGTGTGCTCGCTTTCAA 59.337 50.000 11.68 0.0 41.68 2.69 F
3494 3706 1.619654 CCAAGGATGCTGTTGGTGAA 58.380 50.000 0.00 0.0 38.77 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1240 1380 0.032952 CGTCTTGAAAGGTGTCCGGA 59.967 55.000 0.0 0.0 0.00 5.14 R
2664 2875 0.527565 CAAGGGTTTTCGGCATGGAG 59.472 55.000 0.0 0.0 0.00 3.86 R
2671 2882 1.941975 ACACGTTACAAGGGTTTTCGG 59.058 47.619 0.0 0.0 0.00 4.30 R
2837 3049 9.847224 AATATAACTCCACATTCCGTTAGAAAT 57.153 29.630 0.0 0.0 38.21 2.17 R
2882 3094 0.819582 GTGGAAACTGCATGGATGGG 59.180 55.000 0.0 0.0 0.00 4.00 R
3362 3574 1.004440 AGACGGCTGCTTCTTGACC 60.004 57.895 0.0 0.0 0.00 4.02 R
4426 4667 0.249398 ATAGCACCTGAACCACGGTC 59.751 55.000 0.0 0.0 0.00 4.79 R
5160 5416 0.108963 CCAAGGGTAAACCGTGTCCA 59.891 55.000 0.0 0.0 45.96 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 0.539051 CTCTTTCTCCGGTCATGGCT 59.461 55.000 0.00 0.00 0.00 4.75
77 78 0.250234 TCTTTCTCCGGTCATGGCTG 59.750 55.000 0.00 0.00 0.00 4.85
87 88 0.475906 GTCATGGCTGGCCCTAATCT 59.524 55.000 9.28 0.00 34.56 2.40
113 114 0.736053 TTTCCGTTTGTTCTTGCGCT 59.264 45.000 9.73 0.00 0.00 5.92
130 131 1.816183 CGCTCTTTGTTGGGTTGGGTA 60.816 52.381 0.00 0.00 0.00 3.69
131 132 1.611977 GCTCTTTGTTGGGTTGGGTAC 59.388 52.381 0.00 0.00 0.00 3.34
132 133 2.751816 GCTCTTTGTTGGGTTGGGTACT 60.752 50.000 0.00 0.00 0.00 2.73
133 134 3.497227 GCTCTTTGTTGGGTTGGGTACTA 60.497 47.826 0.00 0.00 0.00 1.82
134 135 4.070009 CTCTTTGTTGGGTTGGGTACTAC 58.930 47.826 0.00 0.00 0.00 2.73
135 136 2.955342 TTGTTGGGTTGGGTACTACC 57.045 50.000 0.00 0.00 37.60 3.18
248 274 1.188863 GCAAATCCTGTGGGCTCAAT 58.811 50.000 0.00 0.00 0.00 2.57
291 317 1.894699 GTTATCCCCCTCCCTCTTGT 58.105 55.000 0.00 0.00 0.00 3.16
298 324 0.391263 CCCTCCCTCTTGTTGCGTAC 60.391 60.000 0.00 0.00 0.00 3.67
299 325 0.608640 CCTCCCTCTTGTTGCGTACT 59.391 55.000 0.00 0.00 0.00 2.73
300 326 1.404315 CCTCCCTCTTGTTGCGTACTC 60.404 57.143 0.00 0.00 0.00 2.59
301 327 0.606604 TCCCTCTTGTTGCGTACTCC 59.393 55.000 0.00 0.00 0.00 3.85
302 328 0.736325 CCCTCTTGTTGCGTACTCCG 60.736 60.000 0.00 0.00 40.40 4.63
303 329 0.038526 CCTCTTGTTGCGTACTCCGT 60.039 55.000 0.00 0.00 39.32 4.69
304 330 1.200716 CCTCTTGTTGCGTACTCCGTA 59.799 52.381 0.00 0.00 39.32 4.02
305 331 2.516923 CTCTTGTTGCGTACTCCGTAG 58.483 52.381 0.00 0.00 39.32 3.51
306 332 1.881973 TCTTGTTGCGTACTCCGTAGT 59.118 47.619 0.00 0.00 39.91 2.73
307 333 3.073678 TCTTGTTGCGTACTCCGTAGTA 58.926 45.455 0.00 0.00 37.15 1.82
308 334 3.691118 TCTTGTTGCGTACTCCGTAGTAT 59.309 43.478 0.00 0.00 40.30 2.12
309 335 4.875536 TCTTGTTGCGTACTCCGTAGTATA 59.124 41.667 0.00 0.00 40.30 1.47
451 483 3.316573 CTCTCCGTTGCCTCCCCAC 62.317 68.421 0.00 0.00 0.00 4.61
457 489 3.884774 TTGCCTCCCCACTTGCGT 61.885 61.111 0.00 0.00 0.00 5.24
473 505 1.171876 GCGTTAGAAAAAGATGCGCG 58.828 50.000 0.00 0.00 34.34 6.86
483 515 3.682315 GATGCGCGGTGTCGATCG 61.682 66.667 9.36 9.36 39.00 3.69
488 520 4.867599 GCGGTGTCGATCGACCCC 62.868 72.222 37.58 34.89 43.97 4.95
489 521 3.138798 CGGTGTCGATCGACCCCT 61.139 66.667 35.95 0.00 43.97 4.79
490 522 2.494918 GGTGTCGATCGACCCCTG 59.505 66.667 37.58 0.25 43.97 4.45
491 523 2.202756 GTGTCGATCGACCCCTGC 60.203 66.667 37.58 21.60 43.97 4.85
492 524 2.362503 TGTCGATCGACCCCTGCT 60.363 61.111 37.58 0.00 43.97 4.24
493 525 2.413765 GTCGATCGACCCCTGCTC 59.586 66.667 33.06 9.53 39.08 4.26
494 526 2.833582 TCGATCGACCCCTGCTCC 60.834 66.667 15.15 0.00 0.00 4.70
495 527 4.271816 CGATCGACCCCTGCTCCG 62.272 72.222 10.26 0.00 0.00 4.63
496 528 2.833582 GATCGACCCCTGCTCCGA 60.834 66.667 0.00 0.00 35.43 4.55
497 529 3.140225 GATCGACCCCTGCTCCGAC 62.140 68.421 0.00 0.00 33.69 4.79
504 536 2.577059 CCTGCTCCGACGCCTTTA 59.423 61.111 0.00 0.00 0.00 1.85
615 651 1.017177 GGCGCGTTGGACACAAGATA 61.017 55.000 8.43 0.00 37.25 1.98
632 672 5.934625 ACAAGATACTGCGTGATTCTTTCTT 59.065 36.000 0.00 0.00 0.00 2.52
639 679 5.296780 ACTGCGTGATTCTTTCTTTCTTTCA 59.703 36.000 0.00 0.00 0.00 2.69
640 680 6.130298 TGCGTGATTCTTTCTTTCTTTCAA 57.870 33.333 0.00 0.00 0.00 2.69
667 707 1.295423 GGTGCTGTAGCGAGGGAAA 59.705 57.895 0.00 0.00 45.83 3.13
698 739 0.465705 GCGGAAGATCTCATCCACCA 59.534 55.000 12.88 0.00 33.57 4.17
699 740 1.134401 GCGGAAGATCTCATCCACCAA 60.134 52.381 12.88 0.00 33.57 3.67
731 776 3.498777 GGACAGGCGGATTAAGAAATAGC 59.501 47.826 0.00 0.00 0.00 2.97
732 777 3.131396 ACAGGCGGATTAAGAAATAGCG 58.869 45.455 0.00 0.00 32.57 4.26
733 778 2.480419 CAGGCGGATTAAGAAATAGCGG 59.520 50.000 0.00 0.00 32.57 5.52
734 779 1.197036 GGCGGATTAAGAAATAGCGGC 59.803 52.381 0.00 0.00 32.57 6.53
735 780 1.871039 GCGGATTAAGAAATAGCGGCA 59.129 47.619 1.45 0.00 0.00 5.69
1039 1116 2.360801 TGTACTTGCTGTTTCTTTGCCC 59.639 45.455 0.00 0.00 0.00 5.36
1069 1148 2.966309 GCCGTTGCTGTTCCTTCCG 61.966 63.158 0.00 0.00 33.53 4.30
1071 1150 2.954611 GTTGCTGTTCCTTCCGCC 59.045 61.111 0.00 0.00 0.00 6.13
1072 1151 2.282180 TTGCTGTTCCTTCCGCCC 60.282 61.111 0.00 0.00 0.00 6.13
1073 1152 4.697756 TGCTGTTCCTTCCGCCCG 62.698 66.667 0.00 0.00 0.00 6.13
1074 1153 4.699522 GCTGTTCCTTCCGCCCGT 62.700 66.667 0.00 0.00 0.00 5.28
1100 1179 5.671493 ACAAGTAGTATGATGGGTTAGCAC 58.329 41.667 0.00 0.00 0.00 4.40
1102 1181 5.277857 AGTAGTATGATGGGTTAGCACAC 57.722 43.478 0.00 0.00 0.00 3.82
1103 1182 4.714802 AGTAGTATGATGGGTTAGCACACA 59.285 41.667 0.00 0.00 41.95 3.72
1105 1184 4.517285 AGTATGATGGGTTAGCACACAAG 58.483 43.478 0.00 0.00 40.73 3.16
1106 1185 2.949177 TGATGGGTTAGCACACAAGT 57.051 45.000 0.00 0.00 40.73 3.16
1108 1187 2.371841 TGATGGGTTAGCACACAAGTCT 59.628 45.455 0.00 0.00 40.73 3.24
1151 1238 4.704833 CCTGCGGTGGTGGTCTGG 62.705 72.222 0.00 0.00 0.00 3.86
1208 1348 3.065371 CGTGCTTTGAACCTCTGTTTCTT 59.935 43.478 0.00 0.00 33.97 2.52
1209 1349 4.272504 CGTGCTTTGAACCTCTGTTTCTTA 59.727 41.667 0.00 0.00 33.97 2.10
1231 1371 5.876612 ACAAGATGAAGTTCATGAAGCTC 57.123 39.130 22.93 8.34 37.20 4.09
1240 1380 3.126831 GTTCATGAAGCTCGGATCGAAT 58.873 45.455 8.80 0.00 34.74 3.34
1255 1395 1.345089 TCGAATCCGGACACCTTTCAA 59.655 47.619 6.12 0.00 36.24 2.69
1274 1414 1.227002 GACGATGGGAGCGAAGTCC 60.227 63.158 0.00 0.00 35.64 3.85
1292 1432 1.905894 TCCGGTGAGTGATCCATTCAA 59.094 47.619 0.00 0.00 35.70 2.69
1307 1454 5.856156 TCCATTCAACTTGCATGTTCATTT 58.144 33.333 14.57 0.00 0.00 2.32
1308 1455 6.289834 TCCATTCAACTTGCATGTTCATTTT 58.710 32.000 14.57 0.00 0.00 1.82
1316 1463 6.215845 ACTTGCATGTTCATTTTACCTTGTC 58.784 36.000 0.00 0.00 0.00 3.18
1326 1473 4.846779 TTTTACCTTGTCCTTGTGCATC 57.153 40.909 0.00 0.00 0.00 3.91
1340 1487 2.286950 TGTGCATCGTTTCTGTTTGCTC 60.287 45.455 0.00 0.00 34.47 4.26
1344 1491 2.143008 TCGTTTCTGTTTGCTCGCTA 57.857 45.000 0.00 0.00 0.00 4.26
1345 1492 2.683968 TCGTTTCTGTTTGCTCGCTAT 58.316 42.857 0.00 0.00 0.00 2.97
1348 1499 3.123621 CGTTTCTGTTTGCTCGCTATCTT 59.876 43.478 0.00 0.00 0.00 2.40
1359 1514 2.799412 CTCGCTATCTTTGGATCAGCAC 59.201 50.000 0.00 0.00 32.93 4.40
1368 1523 2.291209 TGGATCAGCACACAACCATT 57.709 45.000 0.00 0.00 0.00 3.16
1395 1556 9.914834 TCACTGCTTATTGGTTTTAGGTATTAT 57.085 29.630 0.00 0.00 0.00 1.28
1414 1575 8.960591 GGTATTATTAATCCATGATCCCAACAG 58.039 37.037 0.00 0.00 0.00 3.16
1460 1621 6.594547 TCTCTTCATTTCTGCATCTCTGAAAG 59.405 38.462 4.64 5.34 42.97 2.62
1466 1627 4.879197 TCTGCATCTCTGAAAGTTCTGA 57.121 40.909 0.00 1.36 34.58 3.27
1467 1628 5.417754 TCTGCATCTCTGAAAGTTCTGAT 57.582 39.130 1.66 0.00 35.14 2.90
1468 1629 6.535963 TCTGCATCTCTGAAAGTTCTGATA 57.464 37.500 1.66 0.00 35.14 2.15
1469 1630 7.122138 TCTGCATCTCTGAAAGTTCTGATAT 57.878 36.000 1.66 0.00 35.14 1.63
1470 1631 8.242729 TCTGCATCTCTGAAAGTTCTGATATA 57.757 34.615 1.66 0.00 35.14 0.86
1471 1632 8.358895 TCTGCATCTCTGAAAGTTCTGATATAG 58.641 37.037 1.66 0.00 35.14 1.31
1472 1633 8.242729 TGCATCTCTGAAAGTTCTGATATAGA 57.757 34.615 1.66 0.00 35.14 1.98
1473 1634 8.358895 TGCATCTCTGAAAGTTCTGATATAGAG 58.641 37.037 1.66 0.00 36.61 2.43
1474 1635 7.814107 GCATCTCTGAAAGTTCTGATATAGAGG 59.186 40.741 0.00 0.17 36.61 3.69
1475 1636 7.831691 TCTCTGAAAGTTCTGATATAGAGGG 57.168 40.000 0.00 0.00 36.61 4.30
1478 1639 4.348168 TGAAAGTTCTGATATAGAGGGGCC 59.652 45.833 0.00 0.00 36.61 5.80
1482 1668 1.646447 TCTGATATAGAGGGGCCGGAT 59.354 52.381 5.05 0.00 0.00 4.18
1526 1712 5.458015 GGACAAACCAGCATAAACAACTAC 58.542 41.667 0.00 0.00 38.79 2.73
1527 1713 5.009210 GGACAAACCAGCATAAACAACTACA 59.991 40.000 0.00 0.00 38.79 2.74
1532 1720 5.238583 ACCAGCATAAACAACTACAGTCTC 58.761 41.667 0.00 0.00 0.00 3.36
1533 1721 5.012148 ACCAGCATAAACAACTACAGTCTCT 59.988 40.000 0.00 0.00 0.00 3.10
1535 1723 7.097192 CCAGCATAAACAACTACAGTCTCTTA 58.903 38.462 0.00 0.00 0.00 2.10
1537 1725 9.155975 CAGCATAAACAACTACAGTCTCTTATT 57.844 33.333 0.00 0.00 0.00 1.40
1543 1731 7.948278 ACAACTACAGTCTCTTATTGTGTTC 57.052 36.000 0.00 0.00 29.68 3.18
1545 1733 7.653713 ACAACTACAGTCTCTTATTGTGTTCTG 59.346 37.037 0.00 0.00 29.68 3.02
1546 1737 7.291411 ACTACAGTCTCTTATTGTGTTCTGT 57.709 36.000 0.00 0.00 38.26 3.41
1550 1741 6.591834 ACAGTCTCTTATTGTGTTCTGTATGC 59.408 38.462 0.00 0.00 33.96 3.14
1569 1760 7.681679 TGTATGCGAGTATTATATTTCCCCAA 58.318 34.615 0.00 0.00 0.00 4.12
1649 1840 8.539544 TGTATCCTCTCATTGTCAAATGTCTTA 58.460 33.333 0.00 0.00 43.21 2.10
1687 1878 7.290948 CCCTATCTTATCCAGGATATGTGCATA 59.709 40.741 17.92 10.30 0.00 3.14
1807 1998 1.450312 CAGCCTTGGTTAGAGCGGG 60.450 63.158 0.00 0.00 0.00 6.13
1926 2117 4.156739 GTGCTTAAAGGGATTCAGAGTTGG 59.843 45.833 0.00 0.00 0.00 3.77
1927 2118 4.042809 TGCTTAAAGGGATTCAGAGTTGGA 59.957 41.667 0.00 0.00 0.00 3.53
1928 2119 5.196695 GCTTAAAGGGATTCAGAGTTGGAT 58.803 41.667 0.00 0.00 0.00 3.41
1929 2120 5.654209 GCTTAAAGGGATTCAGAGTTGGATT 59.346 40.000 0.00 0.00 0.00 3.01
1930 2121 6.405176 GCTTAAAGGGATTCAGAGTTGGATTG 60.405 42.308 0.00 0.00 0.00 2.67
1931 2122 4.664688 AAGGGATTCAGAGTTGGATTGT 57.335 40.909 0.00 0.00 0.00 2.71
1932 2123 5.779241 AAGGGATTCAGAGTTGGATTGTA 57.221 39.130 0.00 0.00 0.00 2.41
1933 2124 5.779241 AGGGATTCAGAGTTGGATTGTAA 57.221 39.130 0.00 0.00 0.00 2.41
1934 2125 6.332976 AGGGATTCAGAGTTGGATTGTAAT 57.667 37.500 0.00 0.00 0.00 1.89
1935 2126 6.125029 AGGGATTCAGAGTTGGATTGTAATG 58.875 40.000 0.00 0.00 0.00 1.90
1936 2127 6.069440 AGGGATTCAGAGTTGGATTGTAATGA 60.069 38.462 0.00 0.00 0.00 2.57
1937 2128 6.774656 GGGATTCAGAGTTGGATTGTAATGAT 59.225 38.462 0.00 0.00 0.00 2.45
1938 2129 7.040823 GGGATTCAGAGTTGGATTGTAATGATC 60.041 40.741 0.00 0.00 0.00 2.92
1939 2130 7.500227 GGATTCAGAGTTGGATTGTAATGATCA 59.500 37.037 0.00 0.00 0.00 2.92
1940 2131 8.991783 ATTCAGAGTTGGATTGTAATGATCAT 57.008 30.769 1.18 1.18 0.00 2.45
1941 2132 8.442632 TTCAGAGTTGGATTGTAATGATCATC 57.557 34.615 9.06 0.00 0.00 2.92
1942 2133 6.994496 TCAGAGTTGGATTGTAATGATCATCC 59.006 38.462 9.06 6.24 0.00 3.51
1943 2134 6.996879 CAGAGTTGGATTGTAATGATCATCCT 59.003 38.462 9.06 0.00 0.00 3.24
1944 2135 7.501559 CAGAGTTGGATTGTAATGATCATCCTT 59.498 37.037 9.06 0.00 0.00 3.36
1945 2136 7.501559 AGAGTTGGATTGTAATGATCATCCTTG 59.498 37.037 9.06 0.00 0.00 3.61
1946 2137 7.348815 AGTTGGATTGTAATGATCATCCTTGA 58.651 34.615 9.06 0.00 36.00 3.02
1947 2138 8.003044 AGTTGGATTGTAATGATCATCCTTGAT 58.997 33.333 9.06 0.26 45.39 2.57
1948 2139 8.636213 GTTGGATTGTAATGATCATCCTTGATT 58.364 33.333 9.06 0.00 42.73 2.57
1949 2140 9.865152 TTGGATTGTAATGATCATCCTTGATTA 57.135 29.630 9.06 0.00 42.73 1.75
1950 2141 9.865152 TGGATTGTAATGATCATCCTTGATTAA 57.135 29.630 9.06 0.00 42.73 1.40
1963 2154 9.739276 TCATCCTTGATTAATACAATCCATACC 57.261 33.333 0.00 0.00 0.00 2.73
1964 2155 8.668353 CATCCTTGATTAATACAATCCATACCG 58.332 37.037 0.00 0.00 0.00 4.02
1965 2156 7.741785 TCCTTGATTAATACAATCCATACCGT 58.258 34.615 0.00 0.00 0.00 4.83
1966 2157 8.215050 TCCTTGATTAATACAATCCATACCGTT 58.785 33.333 0.00 0.00 0.00 4.44
1967 2158 8.846211 CCTTGATTAATACAATCCATACCGTTT 58.154 33.333 0.00 0.00 0.00 3.60
1968 2159 9.878599 CTTGATTAATACAATCCATACCGTTTC 57.121 33.333 0.00 0.00 0.00 2.78
1969 2160 8.078959 TGATTAATACAATCCATACCGTTTCG 57.921 34.615 0.00 0.00 0.00 3.46
1970 2161 4.806342 AATACAATCCATACCGTTTCGC 57.194 40.909 0.00 0.00 0.00 4.70
1971 2162 2.102070 ACAATCCATACCGTTTCGCA 57.898 45.000 0.00 0.00 0.00 5.10
1972 2163 2.428491 ACAATCCATACCGTTTCGCAA 58.572 42.857 0.00 0.00 0.00 4.85
1973 2164 2.814919 ACAATCCATACCGTTTCGCAAA 59.185 40.909 0.00 0.00 0.00 3.68
1974 2165 3.253677 ACAATCCATACCGTTTCGCAAAA 59.746 39.130 0.00 0.00 0.00 2.44
1975 2166 4.230657 CAATCCATACCGTTTCGCAAAAA 58.769 39.130 0.00 0.00 0.00 1.94
2080 2271 9.137459 TGACCAACTTTCCAGTTATATTTGAAA 57.863 29.630 0.00 0.00 41.69 2.69
2254 2448 6.872585 TTTTATGCATTCCCCATCTCTTTT 57.127 33.333 3.54 0.00 0.00 2.27
2257 2451 7.969690 TTATGCATTCCCCATCTCTTTTAAA 57.030 32.000 3.54 0.00 0.00 1.52
2258 2452 8.551682 TTATGCATTCCCCATCTCTTTTAAAT 57.448 30.769 3.54 0.00 0.00 1.40
2260 2454 5.129155 TGCATTCCCCATCTCTTTTAAATGG 59.871 40.000 1.63 0.15 39.76 3.16
2261 2455 5.129320 GCATTCCCCATCTCTTTTAAATGGT 59.871 40.000 4.51 0.00 38.63 3.55
2262 2456 6.352137 GCATTCCCCATCTCTTTTAAATGGTT 60.352 38.462 4.51 0.00 38.63 3.67
2311 2519 5.858381 TCCACTCATAGCAAATCCTGTATC 58.142 41.667 0.00 0.00 0.00 2.24
2474 2685 2.622942 TGTGGAAACTGAATTGGTGAGC 59.377 45.455 0.00 0.00 0.00 4.26
2534 2745 6.438763 CCTTCACAAGGTAAACAATTCAGTC 58.561 40.000 0.00 0.00 43.95 3.51
2558 2769 7.803659 GTCCTCTTCATTTACTTTTTGCTGTAC 59.196 37.037 0.00 0.00 0.00 2.90
2576 2787 5.007136 GCTGTACACTGCTTTCATAAGATCC 59.993 44.000 0.00 0.00 37.75 3.36
2608 2819 6.619801 AAAAATTAGTCGTGCTTCAGAAGT 57.380 33.333 11.94 0.00 0.00 3.01
2609 2820 7.724305 AAAAATTAGTCGTGCTTCAGAAGTA 57.276 32.000 11.94 4.29 0.00 2.24
2664 2875 9.457436 TTTTGGTTACCAACTTATTCTCCTATC 57.543 33.333 17.28 0.00 43.82 2.08
2671 2882 5.936956 CCAACTTATTCTCCTATCTCCATGC 59.063 44.000 0.00 0.00 0.00 4.06
2694 2906 3.546616 CGAAAACCCTTGTAACGTGTTCC 60.547 47.826 0.00 0.00 0.00 3.62
2797 3009 5.499313 TGTTCCATTGCAGAGATGACATTA 58.501 37.500 0.00 0.00 0.00 1.90
2927 3139 0.662619 CCAAGTGTGCTCGCTTTCAA 59.337 50.000 11.68 0.00 41.68 2.69
3179 3391 6.545298 GCATATTCAGGAGTTGGAAAGATTCT 59.455 38.462 0.00 0.00 0.00 2.40
3305 3517 4.796606 CCTCCAAGGTTGAATGGTCATAT 58.203 43.478 0.00 0.00 37.94 1.78
3362 3574 3.899360 ACCTTGATATGCAATGGAATGGG 59.101 43.478 0.00 0.00 35.59 4.00
3494 3706 1.619654 CCAAGGATGCTGTTGGTGAA 58.380 50.000 0.00 0.00 38.77 3.18
3531 3743 3.118112 CACATACAAGAAGCTCCCCTCAT 60.118 47.826 0.00 0.00 0.00 2.90
3600 3812 3.242870 GCTAGTTACCATCACATGCTTGC 60.243 47.826 0.00 0.00 0.00 4.01
3698 3910 2.008329 GAGATGTGCAGGAAAGAGCTG 58.992 52.381 0.00 0.00 0.00 4.24
3831 4043 4.160439 TCGAAGAGTATGTGAGGCAAGATT 59.840 41.667 0.00 0.00 0.00 2.40
3914 4126 7.201679 GCATCTATGATCACAGTAGCAAAAGTT 60.202 37.037 13.08 0.00 0.00 2.66
4037 4249 2.224042 TGATGGGATATATCGCGCCATC 60.224 50.000 26.83 26.83 40.53 3.51
4088 4325 4.200874 TCATCATCTGCATGTACATTGCA 58.799 39.130 22.86 22.86 37.04 4.08
4110 4347 5.734498 GCATACTAAATCACTTTCTTGTGCG 59.266 40.000 0.00 0.00 37.81 5.34
4112 4349 5.751243 ACTAAATCACTTTCTTGTGCGTT 57.249 34.783 0.00 0.00 37.81 4.84
4116 4353 3.673746 TCACTTTCTTGTGCGTTCTTG 57.326 42.857 0.00 0.00 37.81 3.02
4348 4589 2.805099 CAAGAGCGACAAGAAGAAGCTT 59.195 45.455 0.00 0.00 38.39 3.74
4579 4820 1.412710 GATGGAGTCATAGCGGTGGAA 59.587 52.381 0.00 0.00 32.98 3.53
4585 4826 0.824109 TCATAGCGGTGGAAGACCTG 59.176 55.000 0.00 0.00 43.55 4.00
4612 4853 3.953712 TCATCAAAGACCACGAAGCTA 57.046 42.857 0.00 0.00 0.00 3.32
4702 4943 3.179939 GCGACGCCGAAGAAGGTC 61.180 66.667 9.14 0.00 38.22 3.85
4705 4946 1.153804 GACGCCGAAGAAGGTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
4886 5142 1.885871 CTGGGGTTTTAGCTGCTGC 59.114 57.895 13.43 7.62 40.05 5.25
4899 5155 2.304180 AGCTGCTGCCTCTTCTTCTTTA 59.696 45.455 12.44 0.00 40.80 1.85
4900 5156 3.077359 GCTGCTGCCTCTTCTTCTTTAA 58.923 45.455 3.85 0.00 0.00 1.52
4901 5157 3.126686 GCTGCTGCCTCTTCTTCTTTAAG 59.873 47.826 3.85 0.00 0.00 1.85
4902 5158 4.573900 CTGCTGCCTCTTCTTCTTTAAGA 58.426 43.478 0.00 0.00 40.03 2.10
5060 5316 2.745281 GCTGTGAGGTTTTATGCCGTTA 59.255 45.455 0.00 0.00 0.00 3.18
5071 5327 5.664294 TTTATGCCGTTAACTCACTCCTA 57.336 39.130 3.71 0.00 0.00 2.94
5129 5385 3.726517 CTTTGGCCACTGCGACGG 61.727 66.667 3.88 0.00 38.85 4.79
5145 5401 2.216488 CGACGGCGTGATTTTAGATCAG 59.784 50.000 21.19 0.00 0.00 2.90
5152 5408 5.109903 GCGTGATTTTAGATCAGTACCAGT 58.890 41.667 0.00 0.00 0.00 4.00
5153 5409 6.270815 GCGTGATTTTAGATCAGTACCAGTA 58.729 40.000 0.00 0.00 0.00 2.74
5154 5410 6.198591 GCGTGATTTTAGATCAGTACCAGTAC 59.801 42.308 0.00 0.00 36.35 2.73
5155 5411 6.696148 CGTGATTTTAGATCAGTACCAGTACC 59.304 42.308 4.34 0.00 36.75 3.34
5157 5413 7.707035 GTGATTTTAGATCAGTACCAGTACCAG 59.293 40.741 4.34 0.00 36.75 4.00
5158 5414 6.540438 TTTTAGATCAGTACCAGTACCAGG 57.460 41.667 4.34 0.58 36.75 4.45
5159 5415 3.759815 AGATCAGTACCAGTACCAGGT 57.240 47.619 11.84 11.84 43.14 4.00
5160 5416 4.062490 AGATCAGTACCAGTACCAGGTT 57.938 45.455 12.34 0.00 40.54 3.50
5162 5418 2.253610 TCAGTACCAGTACCAGGTTGG 58.746 52.381 12.34 8.62 45.02 3.77
5163 5419 2.158279 TCAGTACCAGTACCAGGTTGGA 60.158 50.000 16.31 6.08 40.96 3.53
5164 5420 2.028385 CAGTACCAGTACCAGGTTGGAC 60.028 54.545 16.31 10.01 40.96 4.02
5167 5423 0.320421 CCAGTACCAGGTTGGACACG 60.320 60.000 4.38 0.00 40.96 4.49
5168 5424 0.320421 CAGTACCAGGTTGGACACGG 60.320 60.000 0.00 0.00 40.96 4.94
5169 5425 0.761702 AGTACCAGGTTGGACACGGT 60.762 55.000 0.00 0.00 40.96 4.83
5170 5426 0.107268 GTACCAGGTTGGACACGGTT 59.893 55.000 0.00 0.00 40.96 4.44
5171 5427 0.838608 TACCAGGTTGGACACGGTTT 59.161 50.000 0.00 0.00 40.96 3.27
5172 5428 0.838608 ACCAGGTTGGACACGGTTTA 59.161 50.000 1.40 0.00 40.96 2.01
5173 5429 1.232119 CCAGGTTGGACACGGTTTAC 58.768 55.000 0.00 0.00 40.96 2.01
5174 5430 1.232119 CAGGTTGGACACGGTTTACC 58.768 55.000 0.00 0.00 0.00 2.85
5321 5578 2.094545 CACAGTAGGAAATTGCTTGGGC 60.095 50.000 0.00 0.00 39.26 5.36
5324 5581 2.041620 AGTAGGAAATTGCTTGGGCTGA 59.958 45.455 0.00 0.00 39.59 4.26
5330 5587 0.681175 ATTGCTTGGGCTGACAAACC 59.319 50.000 0.00 0.00 39.59 3.27
5340 5598 4.116961 GGGCTGACAAACCTAACAAAAAC 58.883 43.478 0.00 0.00 0.00 2.43
5342 5600 3.242016 GCTGACAAACCTAACAAAAACGC 59.758 43.478 0.00 0.00 0.00 4.84
5369 5627 7.807907 GGTATCACAAACGAAATTGATTCTGTT 59.192 33.333 0.00 0.00 36.80 3.16
5373 5631 7.227711 TCACAAACGAAATTGATTCTGTTCCTA 59.772 33.333 0.00 0.00 35.34 2.94
5375 5633 8.023128 ACAAACGAAATTGATTCTGTTCCTATG 58.977 33.333 0.00 0.00 35.34 2.23
5378 5636 7.978982 ACGAAATTGATTCTGTTCCTATGAAG 58.021 34.615 0.00 0.00 35.79 3.02
5398 5656 6.240894 TGAAGAAATTGGTGAAGTGATAGCT 58.759 36.000 0.00 0.00 0.00 3.32
5401 5659 5.645497 AGAAATTGGTGAAGTGATAGCTGTC 59.355 40.000 3.05 3.05 0.00 3.51
5414 5672 2.418368 AGCTGTCTCACACCAAAACA 57.582 45.000 0.00 0.00 0.00 2.83
5503 5761 4.659368 AGGGTAGAATTTACTCCCTTAGGC 59.341 45.833 0.00 0.00 45.19 3.93
5513 5771 2.108250 ACTCCCTTAGGCAGCAAAGAAA 59.892 45.455 8.05 0.00 0.00 2.52
5514 5772 2.489722 CTCCCTTAGGCAGCAAAGAAAC 59.510 50.000 8.05 0.00 0.00 2.78
5523 5781 3.429410 GGCAGCAAAGAAACACTTCAGTT 60.429 43.478 0.00 0.00 37.93 3.16
5535 5793 3.002656 ACACTTCAGTTTGATGTTCGCTG 59.997 43.478 0.00 0.00 33.21 5.18
5539 5797 2.802247 TCAGTTTGATGTTCGCTGTGAG 59.198 45.455 0.00 0.00 0.00 3.51
5543 5801 4.516698 AGTTTGATGTTCGCTGTGAGAAAT 59.483 37.500 0.00 0.00 0.00 2.17
5551 5809 0.179215 GCTGTGAGAAATTGCCGTCG 60.179 55.000 0.00 0.00 0.00 5.12
5553 5811 0.865111 TGTGAGAAATTGCCGTCGTG 59.135 50.000 0.00 0.00 0.00 4.35
5569 5827 1.066787 TCGTGTTGTGAGTGTTGTGGA 60.067 47.619 0.00 0.00 0.00 4.02
5608 5866 0.460311 AGCGGTTCTGTAGGATTCCG 59.540 55.000 0.00 0.00 41.27 4.30
5665 5923 2.832129 CAGTGTAGAGGCCTACTGGAAA 59.168 50.000 21.26 0.00 44.30 3.13
5671 5929 1.208293 GAGGCCTACTGGAAAGGTCAG 59.792 57.143 4.42 0.00 41.44 3.51
5674 5932 1.623811 GCCTACTGGAAAGGTCAGACA 59.376 52.381 2.17 0.00 36.43 3.41
5690 5948 4.884744 GTCAGACATCTAGTAGAAGAGCCA 59.115 45.833 9.33 0.00 0.00 4.75
5695 5953 8.417106 CAGACATCTAGTAGAAGAGCCATTTTA 58.583 37.037 9.33 0.00 0.00 1.52
5697 5955 9.771534 GACATCTAGTAGAAGAGCCATTTTATT 57.228 33.333 9.33 0.00 0.00 1.40
5701 5959 8.204836 TCTAGTAGAAGAGCCATTTTATTCACC 58.795 37.037 0.00 0.00 0.00 4.02
5702 5960 6.963322 AGTAGAAGAGCCATTTTATTCACCT 58.037 36.000 0.00 0.00 0.00 4.00
5703 5961 8.090788 AGTAGAAGAGCCATTTTATTCACCTA 57.909 34.615 0.00 0.00 0.00 3.08
5704 5962 8.548877 AGTAGAAGAGCCATTTTATTCACCTAA 58.451 33.333 0.00 0.00 0.00 2.69
5705 5963 7.631717 AGAAGAGCCATTTTATTCACCTAAC 57.368 36.000 0.00 0.00 0.00 2.34
5707 5965 7.337942 AGAAGAGCCATTTTATTCACCTAACAG 59.662 37.037 0.00 0.00 0.00 3.16
5709 5967 7.175104 AGAGCCATTTTATTCACCTAACAGAA 58.825 34.615 0.00 0.00 0.00 3.02
5710 5968 7.669722 AGAGCCATTTTATTCACCTAACAGAAA 59.330 33.333 0.00 0.00 0.00 2.52
5712 5970 8.088365 AGCCATTTTATTCACCTAACAGAAAAC 58.912 33.333 0.00 0.00 0.00 2.43
5714 5972 8.585018 CCATTTTATTCACCTAACAGAAAACCT 58.415 33.333 0.00 0.00 0.00 3.50
5772 6038 3.883830 AAGCTGTAGGTGATCTCACTG 57.116 47.619 9.98 0.00 45.73 3.66
5780 6046 3.242867 AGGTGATCTCACTGTGAAGGAA 58.757 45.455 12.16 0.00 45.73 3.36
5783 6049 4.453819 GGTGATCTCACTGTGAAGGAAAAG 59.546 45.833 12.16 0.00 45.73 2.27
5785 6051 3.492102 TCTCACTGTGAAGGAAAAGGG 57.508 47.619 12.16 0.00 0.00 3.95
5793 6059 2.100749 GTGAAGGAAAAGGGTGTTGTGG 59.899 50.000 0.00 0.00 0.00 4.17
5794 6060 2.291930 TGAAGGAAAAGGGTGTTGTGGT 60.292 45.455 0.00 0.00 0.00 4.16
5800 6066 2.632987 AAGGGTGTTGTGGTGTCTAC 57.367 50.000 0.00 0.00 0.00 2.59
5801 6067 0.391597 AGGGTGTTGTGGTGTCTACG 59.608 55.000 0.00 0.00 0.00 3.51
5802 6068 0.390124 GGGTGTTGTGGTGTCTACGA 59.610 55.000 0.00 0.00 0.00 3.43
5803 6069 1.202557 GGGTGTTGTGGTGTCTACGAA 60.203 52.381 0.00 0.00 0.00 3.85
5804 6070 2.132762 GGTGTTGTGGTGTCTACGAAG 58.867 52.381 0.00 0.00 0.00 3.79
5805 6071 2.223876 GGTGTTGTGGTGTCTACGAAGA 60.224 50.000 0.00 0.00 0.00 2.87
5806 6072 3.050619 GTGTTGTGGTGTCTACGAAGAG 58.949 50.000 0.00 0.00 30.45 2.85
5807 6073 2.691526 TGTTGTGGTGTCTACGAAGAGT 59.308 45.455 0.00 0.00 30.45 3.24
5837 6103 2.352805 CCTTGCTGACTGGGGGAC 59.647 66.667 0.00 0.00 0.00 4.46
5883 6149 4.176752 GGAGGGTCGGGGTCATGC 62.177 72.222 0.00 0.00 0.00 4.06
5884 6150 4.530857 GAGGGTCGGGGTCATGCG 62.531 72.222 0.00 0.00 0.00 4.73
5886 6152 4.404098 GGGTCGGGGTCATGCGTT 62.404 66.667 0.00 0.00 0.00 4.84
5887 6153 3.124921 GGTCGGGGTCATGCGTTG 61.125 66.667 0.00 0.00 0.00 4.10
5888 6154 3.124921 GTCGGGGTCATGCGTTGG 61.125 66.667 0.00 0.00 0.00 3.77
5889 6155 4.402528 TCGGGGTCATGCGTTGGG 62.403 66.667 0.00 0.00 0.00 4.12
5890 6156 4.402528 CGGGGTCATGCGTTGGGA 62.403 66.667 0.00 0.00 0.00 4.37
5891 6157 2.034999 GGGGTCATGCGTTGGGAA 59.965 61.111 0.00 0.00 0.00 3.97
5892 6158 1.605165 GGGGTCATGCGTTGGGAAA 60.605 57.895 0.00 0.00 0.00 3.13
5893 6159 1.584495 GGGTCATGCGTTGGGAAAC 59.416 57.895 0.00 0.00 0.00 2.78
5908 6174 3.467374 GGAAACCTTGCATGGAAAACA 57.533 42.857 24.48 0.00 0.00 2.83
5909 6175 3.802866 GGAAACCTTGCATGGAAAACAA 58.197 40.909 24.48 0.00 0.00 2.83
5910 6176 4.195416 GGAAACCTTGCATGGAAAACAAA 58.805 39.130 24.48 0.00 0.00 2.83
5911 6177 4.637977 GGAAACCTTGCATGGAAAACAAAA 59.362 37.500 24.48 0.00 0.00 2.44
5912 6178 5.124617 GGAAACCTTGCATGGAAAACAAAAA 59.875 36.000 24.48 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.065906 GAACAAACGGAAAGCGGGCA 62.066 55.000 0.00 0.00 0.00 5.36
113 114 3.181441 GGTAGTACCCAACCCAACAAAGA 60.181 47.826 8.27 0.00 30.04 2.52
130 131 4.621983 GCAACAAAACAAAACAGGGGTAGT 60.622 41.667 0.00 0.00 0.00 2.73
131 132 3.868661 GCAACAAAACAAAACAGGGGTAG 59.131 43.478 0.00 0.00 0.00 3.18
132 133 3.369576 GGCAACAAAACAAAACAGGGGTA 60.370 43.478 0.00 0.00 0.00 3.69
133 134 2.616765 GGCAACAAAACAAAACAGGGGT 60.617 45.455 0.00 0.00 0.00 4.95
134 135 2.013400 GGCAACAAAACAAAACAGGGG 58.987 47.619 0.00 0.00 0.00 4.79
233 259 1.217057 ACCCATTGAGCCCACAGGAT 61.217 55.000 0.00 0.00 33.47 3.24
248 274 5.992217 CGGAATTTGGTTGATTAAAAACCCA 59.008 36.000 16.70 6.94 45.49 4.51
432 464 3.787001 GGGGAGGCAACGGAGAGG 61.787 72.222 0.00 0.00 46.39 3.69
451 483 2.589841 GCGCATCTTTTTCTAACGCAAG 59.410 45.455 0.30 0.00 43.95 4.01
457 489 2.147958 ACACCGCGCATCTTTTTCTAA 58.852 42.857 8.75 0.00 0.00 2.10
486 518 2.515996 TTAAAGGCGTCGGAGCAGGG 62.516 60.000 5.49 0.00 39.27 4.45
488 520 1.153353 TTTTAAAGGCGTCGGAGCAG 58.847 50.000 5.49 0.00 39.27 4.24
489 521 1.595466 TTTTTAAAGGCGTCGGAGCA 58.405 45.000 5.49 0.00 39.27 4.26
632 672 2.619646 GCACCGGTAAACCTTGAAAGAA 59.380 45.455 6.87 0.00 0.00 2.52
639 679 1.609841 GCTACAGCACCGGTAAACCTT 60.610 52.381 6.87 0.00 41.59 3.50
640 680 0.036671 GCTACAGCACCGGTAAACCT 60.037 55.000 6.87 0.00 41.59 3.50
661 701 4.349365 TCCGCAATAAATTTCCTTTCCCT 58.651 39.130 0.00 0.00 0.00 4.20
667 707 6.122277 TGAGATCTTCCGCAATAAATTTCCT 58.878 36.000 0.00 0.00 0.00 3.36
698 739 1.065854 CCGCCTGTCCTTCTTGATCTT 60.066 52.381 0.00 0.00 0.00 2.40
699 740 0.539051 CCGCCTGTCCTTCTTGATCT 59.461 55.000 0.00 0.00 0.00 2.75
732 777 4.423209 ACCTCCTCCTCCCCTGCC 62.423 72.222 0.00 0.00 0.00 4.85
733 778 3.086600 CACCTCCTCCTCCCCTGC 61.087 72.222 0.00 0.00 0.00 4.85
734 779 2.366167 CCACCTCCTCCTCCCCTG 60.366 72.222 0.00 0.00 0.00 4.45
735 780 3.700350 CCCACCTCCTCCTCCCCT 61.700 72.222 0.00 0.00 0.00 4.79
1039 1116 1.079543 CAACGGCTCCAGACCAGAG 60.080 63.158 0.00 0.00 0.00 3.35
1069 1148 1.479323 TCATACTACTTGTCCACGGGC 59.521 52.381 0.00 0.00 0.00 6.13
1071 1150 3.492656 CCCATCATACTACTTGTCCACGG 60.493 52.174 0.00 0.00 0.00 4.94
1072 1151 3.132289 ACCCATCATACTACTTGTCCACG 59.868 47.826 0.00 0.00 0.00 4.94
1073 1152 4.755266 ACCCATCATACTACTTGTCCAC 57.245 45.455 0.00 0.00 0.00 4.02
1074 1153 5.163343 GCTAACCCATCATACTACTTGTCCA 60.163 44.000 0.00 0.00 0.00 4.02
1100 1179 5.245075 AGGAGGAAGAAGAAGTAGACTTGTG 59.755 44.000 0.00 0.00 36.11 3.33
1102 1181 5.105513 GGAGGAGGAAGAAGAAGTAGACTTG 60.106 48.000 0.00 0.00 36.11 3.16
1103 1182 5.020795 GGAGGAGGAAGAAGAAGTAGACTT 58.979 45.833 0.00 0.00 39.23 3.01
1105 1184 4.606210 AGGAGGAGGAAGAAGAAGTAGAC 58.394 47.826 0.00 0.00 0.00 2.59
1106 1185 4.325501 GGAGGAGGAGGAAGAAGAAGTAGA 60.326 50.000 0.00 0.00 0.00 2.59
1108 1187 3.598782 AGGAGGAGGAGGAAGAAGAAGTA 59.401 47.826 0.00 0.00 0.00 2.24
1208 1348 5.578336 CGAGCTTCATGAACTTCATCTTGTA 59.422 40.000 3.38 0.00 34.28 2.41
1209 1349 4.391216 CGAGCTTCATGAACTTCATCTTGT 59.609 41.667 3.38 0.00 34.28 3.16
1240 1380 0.032952 CGTCTTGAAAGGTGTCCGGA 59.967 55.000 0.00 0.00 0.00 5.14
1255 1395 1.668101 GGACTTCGCTCCCATCGTCT 61.668 60.000 0.00 0.00 0.00 4.18
1274 1414 2.977914 AGTTGAATGGATCACTCACCG 58.022 47.619 0.00 0.00 37.92 4.94
1292 1432 6.160576 ACAAGGTAAAATGAACATGCAAGT 57.839 33.333 0.00 0.00 0.00 3.16
1307 1454 2.224426 ACGATGCACAAGGACAAGGTAA 60.224 45.455 0.00 0.00 0.00 2.85
1308 1455 1.346395 ACGATGCACAAGGACAAGGTA 59.654 47.619 0.00 0.00 0.00 3.08
1316 1463 3.044986 CAAACAGAAACGATGCACAAGG 58.955 45.455 0.00 0.00 0.00 3.61
1326 1473 2.668457 AGATAGCGAGCAAACAGAAACG 59.332 45.455 0.00 0.00 0.00 3.60
1340 1487 2.286294 GTGTGCTGATCCAAAGATAGCG 59.714 50.000 0.00 0.00 34.50 4.26
1344 1491 2.821969 GGTTGTGTGCTGATCCAAAGAT 59.178 45.455 0.00 0.00 34.57 2.40
1345 1492 2.229792 GGTTGTGTGCTGATCCAAAGA 58.770 47.619 0.00 0.00 0.00 2.52
1348 1499 2.291209 ATGGTTGTGTGCTGATCCAA 57.709 45.000 0.00 0.00 0.00 3.53
1359 1514 4.925054 CCAATAAGCAGTGAAATGGTTGTG 59.075 41.667 5.53 4.03 40.85 3.33
1368 1523 8.644374 AATACCTAAAACCAATAAGCAGTGAA 57.356 30.769 0.00 0.00 0.00 3.18
1395 1556 5.200483 GTTCCTGTTGGGATCATGGATTAA 58.800 41.667 0.00 0.00 44.66 1.40
1400 1561 1.767759 GGTTCCTGTTGGGATCATGG 58.232 55.000 0.00 0.00 44.66 3.66
1414 1575 1.746787 ACTGACACAAAAACCGGTTCC 59.253 47.619 22.53 4.84 0.00 3.62
1460 1621 1.550976 CCGGCCCCTCTATATCAGAAC 59.449 57.143 0.00 0.00 31.12 3.01
1466 1627 2.877154 ATGATCCGGCCCCTCTATAT 57.123 50.000 0.00 0.00 0.00 0.86
1467 1628 3.769189 TTATGATCCGGCCCCTCTATA 57.231 47.619 0.00 0.00 0.00 1.31
1468 1629 2.642171 TTATGATCCGGCCCCTCTAT 57.358 50.000 0.00 0.00 0.00 1.98
1469 1630 2.642171 ATTATGATCCGGCCCCTCTA 57.358 50.000 0.00 0.00 0.00 2.43
1470 1631 2.642171 TATTATGATCCGGCCCCTCT 57.358 50.000 0.00 0.00 0.00 3.69
1471 1632 3.713826 TTTATTATGATCCGGCCCCTC 57.286 47.619 0.00 0.00 0.00 4.30
1472 1633 4.344104 CATTTTATTATGATCCGGCCCCT 58.656 43.478 0.00 0.00 0.00 4.79
1473 1634 3.119137 GCATTTTATTATGATCCGGCCCC 60.119 47.826 0.00 0.00 0.00 5.80
1474 1635 3.763897 AGCATTTTATTATGATCCGGCCC 59.236 43.478 0.00 0.00 0.00 5.80
1475 1636 6.509418 TTAGCATTTTATTATGATCCGGCC 57.491 37.500 0.00 0.00 0.00 6.13
1478 1639 9.702726 CCGTTATTAGCATTTTATTATGATCCG 57.297 33.333 0.00 0.00 0.00 4.18
1526 1712 6.237675 CGCATACAGAACACAATAAGAGACTG 60.238 42.308 0.00 0.00 0.00 3.51
1527 1713 5.807520 CGCATACAGAACACAATAAGAGACT 59.192 40.000 0.00 0.00 0.00 3.24
1532 1720 7.700322 ATACTCGCATACAGAACACAATAAG 57.300 36.000 0.00 0.00 0.00 1.73
1533 1721 9.758651 ATAATACTCGCATACAGAACACAATAA 57.241 29.630 0.00 0.00 0.00 1.40
1535 1723 9.929180 ATATAATACTCGCATACAGAACACAAT 57.071 29.630 0.00 0.00 0.00 2.71
1537 1725 9.758651 AAATATAATACTCGCATACAGAACACA 57.241 29.630 0.00 0.00 0.00 3.72
1540 1728 8.870879 GGGAAATATAATACTCGCATACAGAAC 58.129 37.037 0.00 0.00 0.00 3.01
1543 1731 7.327975 TGGGGAAATATAATACTCGCATACAG 58.672 38.462 0.00 0.00 0.00 2.74
1545 1733 7.822822 AGTTGGGGAAATATAATACTCGCATAC 59.177 37.037 0.00 0.00 0.00 2.39
1546 1737 7.913789 AGTTGGGGAAATATAATACTCGCATA 58.086 34.615 0.00 0.00 0.00 3.14
1550 1741 8.148351 TGAGAAGTTGGGGAAATATAATACTCG 58.852 37.037 0.00 0.00 0.00 4.18
1569 1760 4.689062 TGACCCTTAAGGATCTGAGAAGT 58.311 43.478 23.74 8.48 39.89 3.01
1624 1815 7.856145 AAGACATTTGACAATGAGAGGATAC 57.144 36.000 1.97 0.00 42.35 2.24
1687 1878 3.165071 GTGTGGATCCCAGGAACAAAAT 58.835 45.455 9.90 0.00 32.34 1.82
1807 1998 1.006832 CCCGACAAATCACGGTCATC 58.993 55.000 0.00 0.00 46.53 2.92
1846 2037 8.560374 GGGACTTTTTCAATCATACAGCTATAC 58.440 37.037 0.00 0.00 0.00 1.47
1937 2128 9.739276 GGTATGGATTGTATTAATCAAGGATGA 57.261 33.333 0.00 0.00 40.57 2.92
1938 2129 8.668353 CGGTATGGATTGTATTAATCAAGGATG 58.332 37.037 0.00 0.00 0.00 3.51
1939 2130 8.383175 ACGGTATGGATTGTATTAATCAAGGAT 58.617 33.333 0.00 0.00 0.00 3.24
1940 2131 7.741785 ACGGTATGGATTGTATTAATCAAGGA 58.258 34.615 0.00 0.00 0.00 3.36
1941 2132 7.979444 ACGGTATGGATTGTATTAATCAAGG 57.021 36.000 0.00 0.00 0.00 3.61
1942 2133 9.878599 GAAACGGTATGGATTGTATTAATCAAG 57.121 33.333 0.00 0.00 0.00 3.02
1943 2134 8.552865 CGAAACGGTATGGATTGTATTAATCAA 58.447 33.333 0.00 0.00 0.00 2.57
1944 2135 7.307514 GCGAAACGGTATGGATTGTATTAATCA 60.308 37.037 0.00 0.00 0.00 2.57
1945 2136 7.013529 GCGAAACGGTATGGATTGTATTAATC 58.986 38.462 0.00 0.00 0.00 1.75
1946 2137 6.483974 TGCGAAACGGTATGGATTGTATTAAT 59.516 34.615 0.00 0.00 0.00 1.40
1947 2138 5.816258 TGCGAAACGGTATGGATTGTATTAA 59.184 36.000 0.00 0.00 0.00 1.40
1948 2139 5.358090 TGCGAAACGGTATGGATTGTATTA 58.642 37.500 0.00 0.00 0.00 0.98
1949 2140 4.193090 TGCGAAACGGTATGGATTGTATT 58.807 39.130 0.00 0.00 0.00 1.89
1950 2141 3.799366 TGCGAAACGGTATGGATTGTAT 58.201 40.909 0.00 0.00 0.00 2.29
1951 2142 3.248495 TGCGAAACGGTATGGATTGTA 57.752 42.857 0.00 0.00 0.00 2.41
1952 2143 2.102070 TGCGAAACGGTATGGATTGT 57.898 45.000 0.00 0.00 0.00 2.71
1953 2144 3.479505 TTTGCGAAACGGTATGGATTG 57.520 42.857 0.00 0.00 0.00 2.67
1954 2145 4.506886 TTTTTGCGAAACGGTATGGATT 57.493 36.364 0.00 0.00 0.00 3.01
1989 2180 9.579932 AGTTCTCAACTCTGAATCCTTTTATTT 57.420 29.630 0.00 0.00 37.02 1.40
1990 2181 9.579932 AAGTTCTCAACTCTGAATCCTTTTATT 57.420 29.630 0.00 0.00 41.91 1.40
1991 2182 9.007901 CAAGTTCTCAACTCTGAATCCTTTTAT 57.992 33.333 0.00 0.00 41.91 1.40
1992 2183 7.445402 CCAAGTTCTCAACTCTGAATCCTTTTA 59.555 37.037 0.00 0.00 41.91 1.52
1993 2184 6.264067 CCAAGTTCTCAACTCTGAATCCTTTT 59.736 38.462 0.00 0.00 41.91 2.27
1994 2185 5.767168 CCAAGTTCTCAACTCTGAATCCTTT 59.233 40.000 0.00 0.00 41.91 3.11
1995 2186 5.072329 TCCAAGTTCTCAACTCTGAATCCTT 59.928 40.000 0.00 0.00 41.91 3.36
1996 2187 4.594920 TCCAAGTTCTCAACTCTGAATCCT 59.405 41.667 0.00 0.00 41.91 3.24
1997 2188 4.899502 TCCAAGTTCTCAACTCTGAATCC 58.100 43.478 0.00 0.00 41.91 3.01
1998 2189 5.994668 ACTTCCAAGTTCTCAACTCTGAATC 59.005 40.000 0.00 0.00 41.91 2.52
1999 2190 5.762218 CACTTCCAAGTTCTCAACTCTGAAT 59.238 40.000 0.00 0.00 41.91 2.57
2000 2191 5.104941 TCACTTCCAAGTTCTCAACTCTGAA 60.105 40.000 0.00 0.00 41.91 3.02
2001 2192 4.405680 TCACTTCCAAGTTCTCAACTCTGA 59.594 41.667 0.00 0.00 41.91 3.27
2002 2193 4.697514 TCACTTCCAAGTTCTCAACTCTG 58.302 43.478 0.00 0.00 41.91 3.35
2003 2194 5.559148 ATCACTTCCAAGTTCTCAACTCT 57.441 39.130 0.00 0.00 41.91 3.24
2004 2195 6.625873 AAATCACTTCCAAGTTCTCAACTC 57.374 37.500 0.00 0.00 41.91 3.01
2005 2196 8.519799 TTAAAATCACTTCCAAGTTCTCAACT 57.480 30.769 0.00 0.00 45.46 3.16
2006 2197 9.581099 TTTTAAAATCACTTCCAAGTTCTCAAC 57.419 29.630 0.00 0.00 37.08 3.18
2080 2271 9.720769 AGTACAGTACAAACTAATGTTTAGCAT 57.279 29.630 13.37 0.00 43.75 3.79
2099 2290 9.998106 AAGAAATGAACTTACATGTAGTACAGT 57.002 29.630 9.25 3.95 30.91 3.55
2196 2389 8.491152 CATGAATATCACACGAGAAATAACCTC 58.509 37.037 0.00 0.00 0.00 3.85
2233 2427 7.969690 TTTAAAAGAGATGGGGAATGCATAA 57.030 32.000 0.00 0.00 0.00 1.90
2234 2428 7.015487 CCATTTAAAAGAGATGGGGAATGCATA 59.985 37.037 0.00 0.00 37.31 3.14
2235 2429 6.183361 CCATTTAAAAGAGATGGGGAATGCAT 60.183 38.462 0.00 0.00 37.31 3.96
2257 2451 9.193806 AGATTTGTCTATTTAGCATGAAACCAT 57.806 29.630 0.00 0.00 0.00 3.55
2258 2452 8.461222 CAGATTTGTCTATTTAGCATGAAACCA 58.539 33.333 0.00 0.00 0.00 3.67
2260 2454 9.846248 AACAGATTTGTCTATTTAGCATGAAAC 57.154 29.630 0.00 0.00 36.23 2.78
2433 2643 6.022821 CCACAATTCTGCAAAAACAAACAAG 58.977 36.000 0.00 0.00 0.00 3.16
2441 2651 5.728471 TCAGTTTCCACAATTCTGCAAAAA 58.272 33.333 0.00 0.00 0.00 1.94
2474 2685 3.813724 TCCCTAGACGAACAGTGATATCG 59.186 47.826 13.40 13.40 42.05 2.92
2534 2745 7.591426 GTGTACAGCAAAAAGTAAATGAAGAGG 59.409 37.037 0.00 0.00 0.00 3.69
2558 2769 6.446781 AACATGGATCTTATGAAAGCAGTG 57.553 37.500 14.60 0.00 32.36 3.66
2576 2787 9.262472 GAAGCACGACTAATTTTTACTAACATG 57.738 33.333 0.00 0.00 0.00 3.21
2631 2842 8.794335 AATAAGTTGGTAACCAAAAGCAAAAA 57.206 26.923 0.00 0.00 45.73 1.94
2632 2843 8.261522 AGAATAAGTTGGTAACCAAAAGCAAAA 58.738 29.630 0.00 0.00 45.73 2.44
2636 2847 6.208797 AGGAGAATAAGTTGGTAACCAAAAGC 59.791 38.462 0.00 0.00 45.73 3.51
2664 2875 0.527565 CAAGGGTTTTCGGCATGGAG 59.472 55.000 0.00 0.00 0.00 3.86
2671 2882 1.941975 ACACGTTACAAGGGTTTTCGG 59.058 47.619 0.00 0.00 0.00 4.30
2837 3049 9.847224 AATATAACTCCACATTCCGTTAGAAAT 57.153 29.630 0.00 0.00 38.21 2.17
2878 3090 2.381911 GAAACTGCATGGATGGGTGAT 58.618 47.619 0.00 0.00 0.00 3.06
2882 3094 0.819582 GTGGAAACTGCATGGATGGG 59.180 55.000 0.00 0.00 0.00 4.00
2942 3154 9.645128 TGGATATCAATATTTTCATCACCAGTT 57.355 29.630 4.83 0.00 0.00 3.16
3080 3292 7.102346 CAGTTTCATTCATCTCCAAGTACTCT 58.898 38.462 0.00 0.00 0.00 3.24
3362 3574 1.004440 AGACGGCTGCTTCTTGACC 60.004 57.895 0.00 0.00 0.00 4.02
3419 3631 5.316167 ACTTGCTTGTAGGAATCAATGTCA 58.684 37.500 0.00 0.00 0.00 3.58
3425 3637 6.888105 TGATATGACTTGCTTGTAGGAATCA 58.112 36.000 0.00 0.00 0.00 2.57
3494 3706 4.588899 TGTATGTGTAGGCTTTGATTGCT 58.411 39.130 0.00 0.00 0.00 3.91
3531 3743 6.351202 CCATGGATCATTGAAACCTTGCTTAA 60.351 38.462 5.56 0.00 0.00 1.85
3600 3812 3.450457 ACTGAGCCTTTCTCTGATGGTAG 59.550 47.826 5.94 0.00 41.62 3.18
3698 3910 1.087501 GCCGTCCAATTCTCTTCACC 58.912 55.000 0.00 0.00 0.00 4.02
3831 4043 6.128499 GCATTATGTTTCTGAGCATTTTTGCA 60.128 34.615 0.33 0.00 37.25 4.08
3914 4126 3.118775 CCTCGGTGAGATAACCATCAACA 60.119 47.826 0.00 0.00 40.53 3.33
4011 4223 3.384668 CGCGATATATCCCATCATGGAC 58.615 50.000 4.75 0.00 40.96 4.02
4037 4249 8.565416 TGTAAGAGTACCTTCATATACATGTCG 58.435 37.037 0.00 0.00 36.34 4.35
4088 4325 7.387948 AGAACGCACAAGAAAGTGATTTAGTAT 59.612 33.333 0.00 0.00 42.05 2.12
4294 4535 3.056322 GGTGCTCCTGCTCAAAATTTCAT 60.056 43.478 0.00 0.00 40.48 2.57
4348 4589 1.676635 GCAGTCCATGAGGCAGCAA 60.677 57.895 0.00 0.00 33.74 3.91
4426 4667 0.249398 ATAGCACCTGAACCACGGTC 59.751 55.000 0.00 0.00 0.00 4.79
4579 4820 3.328931 TCTTTGATGAAAGGCTCAGGTCT 59.671 43.478 4.76 0.00 39.36 3.85
4585 4826 2.160417 CGTGGTCTTTGATGAAAGGCTC 59.840 50.000 9.15 0.68 42.51 4.70
4612 4853 2.042831 GGCGCTGTGGCATTTCTCT 61.043 57.895 7.64 0.00 44.08 3.10
4702 4943 1.227089 CGACAGCATCTTCCCGAGG 60.227 63.158 0.00 0.00 0.00 4.63
4705 4946 1.880340 GCTCGACAGCATCTTCCCG 60.880 63.158 0.00 0.00 46.06 5.14
4899 5155 6.519679 TGCTTCTATGCAACATTCATTCTT 57.480 33.333 0.00 0.00 40.29 2.52
4900 5156 6.376299 TCTTGCTTCTATGCAACATTCATTCT 59.624 34.615 0.00 0.00 46.43 2.40
4901 5157 6.558009 TCTTGCTTCTATGCAACATTCATTC 58.442 36.000 0.00 0.00 46.43 2.67
4902 5158 6.519679 TCTTGCTTCTATGCAACATTCATT 57.480 33.333 0.00 0.00 46.43 2.57
5060 5316 9.357161 CCTCATTATAACTACTAGGAGTGAGTT 57.643 37.037 8.84 5.11 36.21 3.01
5071 5327 8.263854 ACACATTAGGCCTCATTATAACTACT 57.736 34.615 9.68 0.00 0.00 2.57
5082 5338 2.554344 GGTCCAAACACATTAGGCCTCA 60.554 50.000 9.68 0.00 0.00 3.86
5129 5385 5.109903 ACTGGTACTGATCTAAAATCACGC 58.890 41.667 0.00 0.00 0.00 5.34
5152 5408 0.838608 AAACCGTGTCCAACCTGGTA 59.161 50.000 0.00 0.00 39.03 3.25
5153 5409 0.838608 TAAACCGTGTCCAACCTGGT 59.161 50.000 0.00 0.00 39.03 4.00
5154 5410 1.232119 GTAAACCGTGTCCAACCTGG 58.768 55.000 0.00 0.00 39.43 4.45
5155 5411 1.232119 GGTAAACCGTGTCCAACCTG 58.768 55.000 0.00 0.00 0.00 4.00
5157 5413 0.109153 AGGGTAAACCGTGTCCAACC 59.891 55.000 0.00 0.00 46.96 3.77
5158 5414 1.605232 CAAGGGTAAACCGTGTCCAAC 59.395 52.381 0.00 0.00 46.96 3.77
5159 5415 1.477195 CCAAGGGTAAACCGTGTCCAA 60.477 52.381 0.00 0.00 45.96 3.53
5160 5416 0.108963 CCAAGGGTAAACCGTGTCCA 59.891 55.000 0.00 0.00 45.96 4.02
5162 5418 1.875514 GAACCAAGGGTAAACCGTGTC 59.124 52.381 0.00 0.00 45.96 3.67
5163 5419 1.491754 AGAACCAAGGGTAAACCGTGT 59.508 47.619 0.00 0.00 45.96 4.49
5164 5420 1.877443 CAGAACCAAGGGTAAACCGTG 59.123 52.381 0.00 0.00 46.82 4.94
5167 5423 2.511659 GTCCAGAACCAAGGGTAAACC 58.488 52.381 0.00 0.00 33.12 3.27
5168 5424 2.148768 CGTCCAGAACCAAGGGTAAAC 58.851 52.381 0.00 0.00 33.12 2.01
5169 5425 1.770061 ACGTCCAGAACCAAGGGTAAA 59.230 47.619 0.00 0.00 33.12 2.01
5170 5426 1.071071 CACGTCCAGAACCAAGGGTAA 59.929 52.381 0.00 0.00 33.12 2.85
5171 5427 0.682852 CACGTCCAGAACCAAGGGTA 59.317 55.000 0.00 0.00 33.12 3.69
5172 5428 1.450211 CACGTCCAGAACCAAGGGT 59.550 57.895 0.00 0.00 37.65 4.34
5173 5429 1.302511 CCACGTCCAGAACCAAGGG 60.303 63.158 0.00 0.00 0.00 3.95
5174 5430 0.682852 TACCACGTCCAGAACCAAGG 59.317 55.000 0.00 0.00 0.00 3.61
5261 5518 1.134907 TCGCTGGGTTCGGTTAGATTC 60.135 52.381 0.00 0.00 0.00 2.52
5296 5553 5.829924 CCCAAGCAATTTCCTACTGTGATAT 59.170 40.000 0.00 0.00 0.00 1.63
5304 5561 2.164422 GTCAGCCCAAGCAATTTCCTAC 59.836 50.000 0.00 0.00 43.56 3.18
5307 5564 0.968405 TGTCAGCCCAAGCAATTTCC 59.032 50.000 0.00 0.00 43.56 3.13
5317 5574 2.738587 TTGTTAGGTTTGTCAGCCCA 57.261 45.000 0.00 0.00 0.00 5.36
5321 5578 3.480668 CGCGTTTTTGTTAGGTTTGTCAG 59.519 43.478 0.00 0.00 0.00 3.51
5324 5581 2.164017 ACCGCGTTTTTGTTAGGTTTGT 59.836 40.909 4.92 0.00 0.00 2.83
5330 5587 4.392619 TGTGATACCGCGTTTTTGTTAG 57.607 40.909 4.92 0.00 0.00 2.34
5340 5598 2.798834 ATTTCGTTTGTGATACCGCG 57.201 45.000 0.00 0.00 0.00 6.46
5342 5600 6.465781 CAGAATCAATTTCGTTTGTGATACCG 59.534 38.462 0.00 0.00 39.46 4.02
5369 5627 6.778821 TCACTTCACCAATTTCTTCATAGGA 58.221 36.000 0.00 0.00 0.00 2.94
5373 5631 6.888632 AGCTATCACTTCACCAATTTCTTCAT 59.111 34.615 0.00 0.00 0.00 2.57
5375 5633 6.150140 ACAGCTATCACTTCACCAATTTCTTC 59.850 38.462 0.00 0.00 0.00 2.87
5378 5636 5.645497 AGACAGCTATCACTTCACCAATTTC 59.355 40.000 0.00 0.00 0.00 2.17
5398 5656 7.014134 ACAATCATATTGTTTTGGTGTGAGACA 59.986 33.333 0.00 0.00 0.00 3.41
5401 5659 8.729756 TCTACAATCATATTGTTTTGGTGTGAG 58.270 33.333 10.29 0.18 34.11 3.51
5414 5672 8.580720 ACGCAGATACTTCTCTACAATCATATT 58.419 33.333 0.00 0.00 0.00 1.28
5435 5693 1.560004 ATTCTCACACGCACACGCAG 61.560 55.000 0.00 0.00 45.53 5.18
5503 5761 5.401550 TCAAACTGAAGTGTTTCTTTGCTG 58.598 37.500 0.00 0.00 37.98 4.41
5513 5771 3.002656 CAGCGAACATCAAACTGAAGTGT 59.997 43.478 0.00 0.00 27.87 3.55
5514 5772 3.002656 ACAGCGAACATCAAACTGAAGTG 59.997 43.478 0.00 0.00 27.87 3.16
5523 5781 4.786507 CAATTTCTCACAGCGAACATCAA 58.213 39.130 0.00 0.00 0.00 2.57
5535 5793 0.865769 ACACGACGGCAATTTCTCAC 59.134 50.000 0.00 0.00 0.00 3.51
5539 5797 1.003331 TCACAACACGACGGCAATTTC 60.003 47.619 0.00 0.00 0.00 2.17
5543 5801 1.153529 ACTCACAACACGACGGCAA 60.154 52.632 0.00 0.00 0.00 4.52
5551 5809 2.356135 AGTCCACAACACTCACAACAC 58.644 47.619 0.00 0.00 0.00 3.32
5553 5811 2.747446 ACAAGTCCACAACACTCACAAC 59.253 45.455 0.00 0.00 0.00 3.32
5569 5827 3.306364 GCTCAGACACATGTCCTACAAGT 60.306 47.826 8.41 0.00 45.85 3.16
5608 5866 8.231161 GCAAAAACTTCTACTCTACATTCCTTC 58.769 37.037 0.00 0.00 0.00 3.46
5644 5902 2.145397 TCCAGTAGGCCTCTACACTG 57.855 55.000 21.83 21.83 46.23 3.66
5645 5903 2.921834 TTCCAGTAGGCCTCTACACT 57.078 50.000 9.68 3.67 46.23 3.55
5665 5923 5.130350 GCTCTTCTACTAGATGTCTGACCT 58.870 45.833 5.17 0.00 0.00 3.85
5671 5929 9.771534 AATAAAATGGCTCTTCTACTAGATGTC 57.228 33.333 0.00 0.00 0.00 3.06
5674 5932 9.771534 GTGAATAAAATGGCTCTTCTACTAGAT 57.228 33.333 0.00 0.00 0.00 1.98
5695 5953 5.701224 TGGAAGGTTTTCTGTTAGGTGAAT 58.299 37.500 0.00 0.00 33.68 2.57
5697 5955 4.781775 TGGAAGGTTTTCTGTTAGGTGA 57.218 40.909 0.00 0.00 33.68 4.02
5714 5972 0.263172 TTCCTTTGGTGGCCTTGGAA 59.737 50.000 3.32 5.98 0.00 3.53
5741 6007 4.101898 TCACCTACAGCTTTGGTCACTTTA 59.898 41.667 0.00 0.00 30.72 1.85
5772 6038 2.100749 CCACAACACCCTTTTCCTTCAC 59.899 50.000 0.00 0.00 0.00 3.18
5780 6046 2.743838 CGTAGACACCACAACACCCTTT 60.744 50.000 0.00 0.00 0.00 3.11
5783 6049 0.390124 TCGTAGACACCACAACACCC 59.610 55.000 0.00 0.00 0.00 4.61
5785 6051 3.050619 CTCTTCGTAGACACCACAACAC 58.949 50.000 0.00 0.00 34.32 3.32
5807 6073 1.372997 GCAAGGTCGCTGTCTTCGA 60.373 57.895 0.00 0.00 0.00 3.71
5815 6081 2.345244 CCAGTCAGCAAGGTCGCT 59.655 61.111 0.00 0.00 45.21 4.93
5816 6082 2.743928 CCCAGTCAGCAAGGTCGC 60.744 66.667 0.00 0.00 0.00 5.19
5820 6086 2.352805 GTCCCCCAGTCAGCAAGG 59.647 66.667 0.00 0.00 0.00 3.61
5837 6103 3.721706 GTGCCCTCCCTGGACTGG 61.722 72.222 0.00 0.00 38.35 4.00
5883 6149 0.038343 CCATGCAAGGTTTCCCAACG 60.038 55.000 0.00 0.00 33.13 4.10
5884 6150 1.337118 TCCATGCAAGGTTTCCCAAC 58.663 50.000 8.03 0.00 0.00 3.77
5885 6151 2.094100 TTCCATGCAAGGTTTCCCAA 57.906 45.000 8.03 0.00 0.00 4.12
5886 6152 2.094100 TTTCCATGCAAGGTTTCCCA 57.906 45.000 8.03 0.00 0.00 4.37
5887 6153 2.103941 TGTTTTCCATGCAAGGTTTCCC 59.896 45.455 8.03 0.00 0.00 3.97
5888 6154 3.467374 TGTTTTCCATGCAAGGTTTCC 57.533 42.857 8.03 0.00 0.00 3.13
5889 6155 5.809719 TTTTGTTTTCCATGCAAGGTTTC 57.190 34.783 8.03 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.