Multiple sequence alignment - TraesCS4B01G256400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G256400 chr4B 100.000 6657 0 0 1 6657 521720190 521713534 0.000000e+00 12294.0
1 TraesCS4B01G256400 chr4B 93.220 59 4 0 4211 4269 521715917 521715859 3.310000e-13 87.9
2 TraesCS4B01G256400 chr4B 93.220 59 4 0 4274 4332 521715980 521715922 3.310000e-13 87.9
3 TraesCS4B01G256400 chr4D 94.231 3536 108 41 987 4476 425704944 425701459 0.000000e+00 5312.0
4 TraesCS4B01G256400 chr4D 91.372 1414 91 13 4435 5827 425701542 425700139 0.000000e+00 1906.0
5 TraesCS4B01G256400 chr4D 88.802 509 38 11 6168 6657 425699691 425699183 2.050000e-169 606.0
6 TraesCS4B01G256400 chr4D 78.182 715 128 23 1767 2472 425706095 425706790 1.330000e-116 431.0
7 TraesCS4B01G256400 chr4D 85.976 328 32 4 5835 6151 425700092 425699768 8.270000e-89 339.0
8 TraesCS4B01G256400 chr4D 81.818 264 32 7 6169 6417 96042741 96042479 2.430000e-49 207.0
9 TraesCS4B01G256400 chr4D 96.250 80 3 0 2957 3036 440629843 440629764 1.510000e-26 132.0
10 TraesCS4B01G256400 chr4D 93.220 59 4 0 4274 4332 425701721 425701663 3.310000e-13 87.9
11 TraesCS4B01G256400 chr4D 89.831 59 3 1 4211 4269 425701658 425701603 9.260000e-09 73.1
12 TraesCS4B01G256400 chr4A 93.209 3490 172 39 1018 4470 39263709 39267170 0.000000e+00 5072.0
13 TraesCS4B01G256400 chr4A 92.211 1425 71 11 4432 5827 39267090 39268503 0.000000e+00 1980.0
14 TraesCS4B01G256400 chr4A 91.650 515 31 6 6155 6657 39268844 39269358 0.000000e+00 702.0
15 TraesCS4B01G256400 chr4A 85.230 413 49 9 429 833 39262711 39263119 1.340000e-111 414.0
16 TraesCS4B01G256400 chr4A 86.614 381 37 8 69 445 39262328 39262698 6.210000e-110 409.0
17 TraesCS4B01G256400 chr4A 89.964 279 25 2 5882 6159 39268504 39268780 2.280000e-94 357.0
18 TraesCS4B01G256400 chr4A 91.391 151 6 3 891 1035 39263540 39263689 4.070000e-47 200.0
19 TraesCS4B01G256400 chr4A 80.000 175 25 6 6244 6417 483178599 483178764 3.260000e-23 121.0
20 TraesCS4B01G256400 chr4A 96.610 59 2 0 4274 4332 39266911 39266969 1.530000e-16 99.0
21 TraesCS4B01G256400 chr4A 92.593 54 4 0 4213 4266 39266976 39267029 1.990000e-10 78.7
22 TraesCS4B01G256400 chr5D 83.398 259 39 2 6161 6416 169550317 169550060 3.100000e-58 237.0
23 TraesCS4B01G256400 chr5D 93.750 64 4 0 2980 3043 97514999 97515062 5.490000e-16 97.1
24 TraesCS4B01G256400 chr2D 84.211 228 24 2 1934 2161 260854830 260855045 1.880000e-50 211.0
25 TraesCS4B01G256400 chr5B 85.096 208 28 1 6162 6366 152524096 152523889 6.760000e-50 209.0
26 TraesCS4B01G256400 chr3A 87.013 154 18 2 682 833 41977669 41977516 8.880000e-39 172.0
27 TraesCS4B01G256400 chr6A 84.848 165 23 2 671 833 601962175 601962011 1.490000e-36 165.0
28 TraesCS4B01G256400 chr7B 78.968 252 37 8 6169 6416 99681794 99682033 2.490000e-34 158.0
29 TraesCS4B01G256400 chr7B 85.526 152 20 2 684 833 484271416 484271265 2.490000e-34 158.0
30 TraesCS4B01G256400 chr5A 85.526 152 20 2 684 833 703192962 703192811 2.490000e-34 158.0
31 TraesCS4B01G256400 chr2A 85.526 152 20 2 684 833 622700154 622700003 2.490000e-34 158.0
32 TraesCS4B01G256400 chr2A 85.526 152 20 2 684 833 667688453 667688604 2.490000e-34 158.0
33 TraesCS4B01G256400 chr2A 83.030 165 26 2 671 833 346196244 346196408 1.500000e-31 148.0
34 TraesCS4B01G256400 chr3D 83.636 165 24 3 671 833 436196232 436196395 1.160000e-32 152.0
35 TraesCS4B01G256400 chr3D 93.750 80 5 0 2957 3036 401840820 401840899 3.260000e-23 121.0
36 TraesCS4B01G256400 chrUn 95.000 80 4 0 2957 3036 86760746 86760667 7.010000e-25 126.0
37 TraesCS4B01G256400 chr6D 95.000 80 4 0 2957 3036 127829568 127829647 7.010000e-25 126.0
38 TraesCS4B01G256400 chr6D 95.000 80 4 0 2957 3036 127875178 127875257 7.010000e-25 126.0
39 TraesCS4B01G256400 chr6D 95.000 80 4 0 2957 3036 183508706 183508627 7.010000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G256400 chr4B 521713534 521720190 6656 True 12294.000000 12294 100.000000 1 6657 1 chr4B.!!$R1 6656
1 TraesCS4B01G256400 chr4D 425699183 425704944 5761 True 1387.333333 5312 90.572000 987 6657 6 chr4D.!!$R3 5670
2 TraesCS4B01G256400 chr4D 425706095 425706790 695 False 431.000000 431 78.182000 1767 2472 1 chr4D.!!$F1 705
3 TraesCS4B01G256400 chr4A 39262328 39269358 7030 False 1034.633333 5072 91.052444 69 6657 9 chr4A.!!$F2 6588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 874 0.033503 TGAGGTGCCTACGATGAGGA 60.034 55.000 6.92 0.00 39.15 3.71 F
1420 1876 0.461961 GATCTGCTGGCGGTAGAGTT 59.538 55.000 18.97 3.78 39.86 3.01 F
1984 2475 0.376152 GGTGCGATCTTCATGTGCAG 59.624 55.000 0.00 0.00 36.03 4.41 F
3385 3898 0.108585 ACAAGGATGCGTGGAACTGT 59.891 50.000 5.02 0.00 31.75 3.55 F
4538 5051 1.535437 GCACTTGCTTATGATGCTGGC 60.535 52.381 0.00 0.00 38.21 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1643 2122 0.027586 GAACAGAACAAACGCGCAGT 59.972 50.000 5.73 3.19 0.00 4.40 R
2522 3019 2.742589 TGTGTACAAACGCAACACTGAA 59.257 40.909 0.00 0.00 42.98 3.02 R
3440 3953 3.181424 TGGGATCAATTTGGACTCCAACA 60.181 43.478 10.25 2.98 43.82 3.33 R
4669 5182 0.038021 TAAGTTGCCATCCAGCTGCA 59.962 50.000 8.66 0.00 34.99 4.41 R
5891 6487 0.259938 GGGTGGAGGAAATGCCAGAT 59.740 55.000 0.00 0.00 40.02 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.568623 AGTCAACCCACACCTCATTC 57.431 50.000 0.00 0.00 0.00 2.67
20 21 2.057922 AGTCAACCCACACCTCATTCT 58.942 47.619 0.00 0.00 0.00 2.40
21 22 2.154462 GTCAACCCACACCTCATTCTG 58.846 52.381 0.00 0.00 0.00 3.02
22 23 1.073763 TCAACCCACACCTCATTCTGG 59.926 52.381 0.00 0.00 0.00 3.86
23 24 0.251341 AACCCACACCTCATTCTGGC 60.251 55.000 0.00 0.00 0.00 4.85
24 25 1.379916 CCCACACCTCATTCTGGCA 59.620 57.895 0.00 0.00 0.00 4.92
25 26 0.033796 CCCACACCTCATTCTGGCAT 60.034 55.000 0.00 0.00 0.00 4.40
26 27 1.617804 CCCACACCTCATTCTGGCATT 60.618 52.381 0.00 0.00 0.00 3.56
27 28 1.475280 CCACACCTCATTCTGGCATTG 59.525 52.381 0.00 0.00 0.00 2.82
28 29 1.135199 CACACCTCATTCTGGCATTGC 60.135 52.381 0.00 0.00 0.00 3.56
29 30 1.179152 CACCTCATTCTGGCATTGCA 58.821 50.000 11.39 0.00 0.00 4.08
30 31 1.546923 CACCTCATTCTGGCATTGCAA 59.453 47.619 11.39 0.00 0.00 4.08
31 32 1.547372 ACCTCATTCTGGCATTGCAAC 59.453 47.619 11.39 0.00 0.00 4.17
32 33 1.468565 CCTCATTCTGGCATTGCAACG 60.469 52.381 11.39 0.00 0.00 4.10
33 34 1.200716 CTCATTCTGGCATTGCAACGT 59.799 47.619 11.39 0.00 0.00 3.99
34 35 2.419673 CTCATTCTGGCATTGCAACGTA 59.580 45.455 11.39 0.00 0.00 3.57
35 36 2.419673 TCATTCTGGCATTGCAACGTAG 59.580 45.455 11.39 0.00 0.00 3.51
36 37 2.177394 TTCTGGCATTGCAACGTAGA 57.823 45.000 11.39 0.00 0.00 2.59
37 38 1.438651 TCTGGCATTGCAACGTAGAC 58.561 50.000 11.39 0.00 0.00 2.59
38 39 1.155889 CTGGCATTGCAACGTAGACA 58.844 50.000 11.39 0.00 0.00 3.41
39 40 1.129251 CTGGCATTGCAACGTAGACAG 59.871 52.381 11.39 6.38 0.00 3.51
40 41 0.447801 GGCATTGCAACGTAGACAGG 59.552 55.000 11.39 0.00 0.00 4.00
41 42 1.156736 GCATTGCAACGTAGACAGGT 58.843 50.000 0.00 0.00 0.00 4.00
42 43 1.135972 GCATTGCAACGTAGACAGGTG 60.136 52.381 0.00 0.00 0.00 4.00
43 44 2.412870 CATTGCAACGTAGACAGGTGA 58.587 47.619 0.00 0.00 0.00 4.02
44 45 1.860676 TTGCAACGTAGACAGGTGAC 58.139 50.000 0.00 0.00 0.00 3.67
45 46 0.747852 TGCAACGTAGACAGGTGACA 59.252 50.000 0.00 0.00 0.00 3.58
46 47 1.343142 TGCAACGTAGACAGGTGACAT 59.657 47.619 0.00 0.00 0.00 3.06
47 48 1.726791 GCAACGTAGACAGGTGACATG 59.273 52.381 0.00 0.00 0.00 3.21
48 49 2.609491 GCAACGTAGACAGGTGACATGA 60.609 50.000 3.52 0.00 0.00 3.07
49 50 3.849911 CAACGTAGACAGGTGACATGAT 58.150 45.455 3.52 0.00 0.00 2.45
50 51 3.510388 ACGTAGACAGGTGACATGATG 57.490 47.619 3.52 0.00 0.00 3.07
51 52 2.826128 ACGTAGACAGGTGACATGATGT 59.174 45.455 3.52 0.00 0.00 3.06
52 53 3.182182 CGTAGACAGGTGACATGATGTG 58.818 50.000 1.23 0.00 0.00 3.21
53 54 3.119495 CGTAGACAGGTGACATGATGTGA 60.119 47.826 1.23 0.00 0.00 3.58
54 55 4.618227 CGTAGACAGGTGACATGATGTGAA 60.618 45.833 1.23 0.00 0.00 3.18
55 56 4.356405 AGACAGGTGACATGATGTGAAA 57.644 40.909 1.23 0.00 0.00 2.69
56 57 4.067896 AGACAGGTGACATGATGTGAAAC 58.932 43.478 1.23 0.00 37.35 2.78
87 88 9.741168 CTATACTAAATCGCAAATTCCGTTATG 57.259 33.333 0.00 0.00 0.00 1.90
88 89 6.431198 ACTAAATCGCAAATTCCGTTATGT 57.569 33.333 0.00 0.00 0.00 2.29
93 94 3.120477 TCGCAAATTCCGTTATGTCACAC 60.120 43.478 0.00 0.00 0.00 3.82
97 98 5.561919 GCAAATTCCGTTATGTCACACTCAA 60.562 40.000 0.00 0.00 0.00 3.02
111 112 3.289702 CACTCAACGTGCGATCATTAC 57.710 47.619 0.00 0.00 36.72 1.89
118 119 4.593597 ACGTGCGATCATTACGATTTTT 57.406 36.364 16.96 0.00 40.01 1.94
167 171 5.479724 TCCTTGACATCAATGCCAAAACATA 59.520 36.000 0.00 0.00 35.02 2.29
180 184 5.587844 TGCCAAAACATATTTGTTGCAAAGT 59.412 32.000 0.00 0.00 45.30 2.66
187 191 9.979578 AAACATATTTGTTGCAAAGTGAATAGA 57.020 25.926 0.00 0.00 45.30 1.98
189 193 9.793252 ACATATTTGTTGCAAAGTGAATAGATC 57.207 29.630 0.00 0.00 29.55 2.75
215 219 9.643693 CTAATCCTTTGTTTAAGATTGCAATGT 57.356 29.630 18.59 10.58 35.80 2.71
284 288 7.174107 AGGAAACATACAAGATGGATTTTGG 57.826 36.000 0.00 0.00 0.00 3.28
291 295 5.927281 ACAAGATGGATTTTGGAAGGATG 57.073 39.130 0.00 0.00 0.00 3.51
305 309 6.768641 TGGAAGGATGAATGATCTATTCCA 57.231 37.500 12.78 12.78 45.19 3.53
363 367 2.418060 CCAACCTCAACACCCAAACAAC 60.418 50.000 0.00 0.00 0.00 3.32
364 368 2.223803 ACCTCAACACCCAAACAACA 57.776 45.000 0.00 0.00 0.00 3.33
366 370 2.900546 ACCTCAACACCCAAACAACAAA 59.099 40.909 0.00 0.00 0.00 2.83
367 371 3.258228 CCTCAACACCCAAACAACAAAC 58.742 45.455 0.00 0.00 0.00 2.93
369 373 3.654414 TCAACACCCAAACAACAAACAC 58.346 40.909 0.00 0.00 0.00 3.32
370 374 3.069586 TCAACACCCAAACAACAAACACA 59.930 39.130 0.00 0.00 0.00 3.72
371 375 3.753294 ACACCCAAACAACAAACACAA 57.247 38.095 0.00 0.00 0.00 3.33
372 376 4.073293 ACACCCAAACAACAAACACAAA 57.927 36.364 0.00 0.00 0.00 2.83
373 377 4.646572 ACACCCAAACAACAAACACAAAT 58.353 34.783 0.00 0.00 0.00 2.32
374 378 5.794894 ACACCCAAACAACAAACACAAATA 58.205 33.333 0.00 0.00 0.00 1.40
375 379 5.639931 ACACCCAAACAACAAACACAAATAC 59.360 36.000 0.00 0.00 0.00 1.89
376 380 5.872070 CACCCAAACAACAAACACAAATACT 59.128 36.000 0.00 0.00 0.00 2.12
377 381 6.035542 CACCCAAACAACAAACACAAATACTC 59.964 38.462 0.00 0.00 0.00 2.59
378 382 5.522097 CCCAAACAACAAACACAAATACTCC 59.478 40.000 0.00 0.00 0.00 3.85
418 422 3.181487 GGAAATAATGCACAGGCGAACAT 60.181 43.478 0.00 0.00 45.35 2.71
420 424 1.819928 TAATGCACAGGCGAACATGT 58.180 45.000 0.00 0.00 45.35 3.21
433 437 5.009610 AGGCGAACATGTGTTGATTAAAACT 59.990 36.000 0.00 0.00 38.56 2.66
451 484 8.918202 TTAAAACTGATGAGTTGGTGAACTAT 57.082 30.769 0.00 0.00 42.80 2.12
466 499 2.873133 ACTATCTAACACGAGCAGGC 57.127 50.000 0.00 0.00 0.00 4.85
479 512 0.764752 AGCAGGCATCCCTACCCTAC 60.765 60.000 0.00 0.00 40.33 3.18
481 514 1.152312 AGGCATCCCTACCCTACGG 60.152 63.158 0.00 0.00 40.58 4.02
491 524 2.969950 CCTACCCTACGGAATCCATTCA 59.030 50.000 0.00 0.00 38.53 2.57
494 527 1.768870 CCCTACGGAATCCATTCAGGT 59.231 52.381 0.00 3.34 38.53 4.00
516 549 4.815533 ACCGAGCAGAGATGCAATATAT 57.184 40.909 2.73 0.00 37.25 0.86
517 550 5.921962 ACCGAGCAGAGATGCAATATATA 57.078 39.130 2.73 0.00 37.25 0.86
518 551 6.286240 ACCGAGCAGAGATGCAATATATAA 57.714 37.500 2.73 0.00 37.25 0.98
519 552 6.882656 ACCGAGCAGAGATGCAATATATAAT 58.117 36.000 2.73 0.00 37.25 1.28
520 553 6.760298 ACCGAGCAGAGATGCAATATATAATG 59.240 38.462 2.73 0.00 37.25 1.90
521 554 6.982724 CCGAGCAGAGATGCAATATATAATGA 59.017 38.462 1.80 0.00 37.25 2.57
522 555 7.656542 CCGAGCAGAGATGCAATATATAATGAT 59.343 37.037 1.80 0.00 37.25 2.45
523 556 8.488764 CGAGCAGAGATGCAATATATAATGATG 58.511 37.037 1.80 0.00 37.25 3.07
524 557 9.543783 GAGCAGAGATGCAATATATAATGATGA 57.456 33.333 1.80 0.00 37.25 2.92
525 558 9.901172 AGCAGAGATGCAATATATAATGATGAA 57.099 29.630 1.80 0.00 37.25 2.57
534 567 9.309516 GCAATATATAATGATGAATTGGCAAGG 57.690 33.333 5.96 0.00 0.00 3.61
622 659 7.636326 ACTCATTTCGTTTCGTAATTCTTGTT 58.364 30.769 0.00 0.00 0.00 2.83
652 690 2.067013 GTTGAACCGAGGAGTAGCAAC 58.933 52.381 0.00 0.00 32.00 4.17
677 715 1.984990 CAATCCAATTGTTGCGAACCG 59.015 47.619 4.43 0.00 35.57 4.44
678 716 1.529226 ATCCAATTGTTGCGAACCGA 58.471 45.000 4.43 0.00 0.00 4.69
680 718 1.883275 TCCAATTGTTGCGAACCGATT 59.117 42.857 4.43 0.00 0.00 3.34
681 719 2.294791 TCCAATTGTTGCGAACCGATTT 59.705 40.909 4.43 0.00 0.00 2.17
682 720 3.502595 TCCAATTGTTGCGAACCGATTTA 59.497 39.130 4.43 0.00 0.00 1.40
685 723 3.479505 TTGTTGCGAACCGATTTATGG 57.520 42.857 0.00 0.00 0.00 2.74
704 742 3.189606 TGGTTGGATGATTAGGTGGACT 58.810 45.455 0.00 0.00 0.00 3.85
705 743 3.054434 TGGTTGGATGATTAGGTGGACTG 60.054 47.826 0.00 0.00 0.00 3.51
708 746 2.505407 TGGATGATTAGGTGGACTGTGG 59.495 50.000 0.00 0.00 0.00 4.17
714 752 3.484953 TTAGGTGGACTGTGGTATCCT 57.515 47.619 0.00 0.00 35.86 3.24
717 755 1.906574 GGTGGACTGTGGTATCCTCAA 59.093 52.381 0.00 0.00 35.86 3.02
726 764 2.771943 GTGGTATCCTCAACCCATCAGA 59.228 50.000 0.00 0.00 36.06 3.27
730 768 3.922171 ATCCTCAACCCATCAGAGTTC 57.078 47.619 0.00 0.00 0.00 3.01
731 769 2.907892 TCCTCAACCCATCAGAGTTCT 58.092 47.619 0.00 0.00 0.00 3.01
733 771 4.425772 TCCTCAACCCATCAGAGTTCTAA 58.574 43.478 0.00 0.00 0.00 2.10
735 773 5.129485 TCCTCAACCCATCAGAGTTCTAATC 59.871 44.000 0.00 0.00 0.00 1.75
739 777 6.013379 TCAACCCATCAGAGTTCTAATCTTGT 60.013 38.462 0.00 0.00 0.00 3.16
740 778 5.738909 ACCCATCAGAGTTCTAATCTTGTG 58.261 41.667 0.00 0.00 0.00 3.33
741 779 4.574013 CCCATCAGAGTTCTAATCTTGTGC 59.426 45.833 0.00 0.00 0.00 4.57
742 780 5.426504 CCATCAGAGTTCTAATCTTGTGCT 58.573 41.667 0.00 0.00 0.00 4.40
743 781 5.523188 CCATCAGAGTTCTAATCTTGTGCTC 59.477 44.000 0.00 0.00 0.00 4.26
744 782 4.738124 TCAGAGTTCTAATCTTGTGCTCG 58.262 43.478 0.00 0.00 0.00 5.03
745 783 4.218635 TCAGAGTTCTAATCTTGTGCTCGT 59.781 41.667 0.00 0.00 0.00 4.18
752 791 9.250624 AGTTCTAATCTTGTGCTCGTATTTATC 57.749 33.333 0.00 0.00 0.00 1.75
754 793 7.952671 TCTAATCTTGTGCTCGTATTTATCCT 58.047 34.615 0.00 0.00 0.00 3.24
796 835 1.815421 GATGCGCGTTCACTGGGAT 60.815 57.895 8.43 0.00 0.00 3.85
801 840 1.078759 CGCGTTCACTGGGATGAGAC 61.079 60.000 0.00 0.00 0.00 3.36
813 852 1.033574 GATGAGACGTTCCCCTCGAT 58.966 55.000 0.00 0.00 32.30 3.59
816 855 2.662866 TGAGACGTTCCCCTCGATTAT 58.337 47.619 0.00 0.00 32.30 1.28
829 868 2.552743 CTCGATTATGAGGTGCCTACGA 59.447 50.000 0.00 0.00 32.18 3.43
833 872 4.489810 GATTATGAGGTGCCTACGATGAG 58.510 47.826 0.00 0.00 0.00 2.90
834 873 1.043816 ATGAGGTGCCTACGATGAGG 58.956 55.000 0.00 0.00 39.88 3.86
835 874 0.033503 TGAGGTGCCTACGATGAGGA 60.034 55.000 6.92 0.00 39.15 3.71
836 875 0.671251 GAGGTGCCTACGATGAGGAG 59.329 60.000 6.92 0.00 39.15 3.69
849 888 3.394836 AGGAGGGCCTGTTCTCGC 61.395 66.667 12.95 0.00 44.90 5.03
850 889 4.821589 GGAGGGCCTGTTCTCGCG 62.822 72.222 12.95 0.00 0.00 5.87
854 893 4.090057 GGCCTGTTCTCGCGCAAC 62.090 66.667 8.75 7.58 0.00 4.17
855 894 3.345808 GCCTGTTCTCGCGCAACA 61.346 61.111 18.65 18.65 32.75 3.33
856 895 2.892334 GCCTGTTCTCGCGCAACAA 61.892 57.895 19.74 8.14 33.36 2.83
857 896 1.868997 CCTGTTCTCGCGCAACAAT 59.131 52.632 19.74 0.00 33.36 2.71
858 897 1.075542 CCTGTTCTCGCGCAACAATA 58.924 50.000 19.74 3.09 33.36 1.90
859 898 1.463056 CCTGTTCTCGCGCAACAATAA 59.537 47.619 19.74 2.80 33.36 1.40
860 899 2.095969 CCTGTTCTCGCGCAACAATAAA 60.096 45.455 19.74 2.51 33.36 1.40
862 901 2.239201 GTTCTCGCGCAACAATAAACC 58.761 47.619 8.75 0.00 0.00 3.27
863 902 1.514003 TCTCGCGCAACAATAAACCA 58.486 45.000 8.75 0.00 0.00 3.67
865 904 1.976045 CTCGCGCAACAATAAACCAAC 59.024 47.619 8.75 0.00 0.00 3.77
866 905 1.333931 TCGCGCAACAATAAACCAACA 59.666 42.857 8.75 0.00 0.00 3.33
867 906 2.030717 TCGCGCAACAATAAACCAACAT 60.031 40.909 8.75 0.00 0.00 2.71
869 908 3.574614 GCGCAACAATAAACCAACATCT 58.425 40.909 0.30 0.00 0.00 2.90
870 909 3.364621 GCGCAACAATAAACCAACATCTG 59.635 43.478 0.30 0.00 0.00 2.90
871 910 4.545610 CGCAACAATAAACCAACATCTGT 58.454 39.130 0.00 0.00 0.00 3.41
872 911 5.694816 CGCAACAATAAACCAACATCTGTA 58.305 37.500 0.00 0.00 0.00 2.74
873 912 5.794945 CGCAACAATAAACCAACATCTGTAG 59.205 40.000 0.00 0.00 0.00 2.74
874 913 6.092748 GCAACAATAAACCAACATCTGTAGG 58.907 40.000 0.00 0.00 0.00 3.18
876 915 6.134535 ACAATAAACCAACATCTGTAGGGA 57.865 37.500 7.67 0.00 0.00 4.20
878 917 7.867921 ACAATAAACCAACATCTGTAGGGATA 58.132 34.615 7.67 2.62 0.00 2.59
879 918 8.502738 ACAATAAACCAACATCTGTAGGGATAT 58.497 33.333 7.67 4.27 0.00 1.63
884 923 8.736097 AACCAACATCTGTAGGGATATATACA 57.264 34.615 0.00 0.00 0.00 2.29
885 924 8.135382 ACCAACATCTGTAGGGATATATACAC 57.865 38.462 0.00 0.00 0.00 2.90
886 925 7.956315 ACCAACATCTGTAGGGATATATACACT 59.044 37.037 0.00 0.00 0.00 3.55
887 926 9.475620 CCAACATCTGTAGGGATATATACACTA 57.524 37.037 0.00 0.00 0.00 2.74
889 928 8.734218 ACATCTGTAGGGATATATACACTACG 57.266 38.462 14.15 10.84 44.33 3.51
890 929 8.327271 ACATCTGTAGGGATATATACACTACGT 58.673 37.037 14.15 0.00 44.33 3.57
891 930 9.828039 CATCTGTAGGGATATATACACTACGTA 57.172 37.037 14.15 0.00 44.33 3.57
909 1310 7.379262 CACTACGTAAAAATAAACCAACCCAAC 59.621 37.037 0.00 0.00 0.00 3.77
958 1361 1.002134 CCGAATGCAGTGGAGGGTT 60.002 57.895 0.00 0.00 0.00 4.11
969 1372 3.647771 GAGGGTTTCGGTGGGCCT 61.648 66.667 4.53 0.00 0.00 5.19
1071 1515 4.193334 GGCCGATTTGCGCCTTCC 62.193 66.667 4.18 0.00 39.11 3.46
1141 1585 1.384222 GCGCCGAATCATCCCCTTTT 61.384 55.000 0.00 0.00 0.00 2.27
1176 1620 3.430651 CCTTCTCCAAAACAAAAGCAGCA 60.431 43.478 0.00 0.00 0.00 4.41
1182 1626 2.976692 AAACAAAAGCAGCAGCCGCC 62.977 55.000 0.00 0.00 43.56 6.13
1203 1650 3.121126 CCGCCGCAAACTTATAGTTATCG 60.121 47.826 0.00 0.00 37.47 2.92
1250 1706 4.680237 CCGCCGCCTCACTTGTCA 62.680 66.667 0.00 0.00 0.00 3.58
1251 1707 2.434884 CGCCGCCTCACTTGTCAT 60.435 61.111 0.00 0.00 0.00 3.06
1252 1708 2.456119 CGCCGCCTCACTTGTCATC 61.456 63.158 0.00 0.00 0.00 2.92
1378 1834 4.445699 GCATCTCTGCTTACCCGG 57.554 61.111 0.00 0.00 45.32 5.73
1393 1849 2.421739 CGGCTGGATTCGGTAGGG 59.578 66.667 0.00 0.00 0.00 3.53
1400 1856 1.336131 GGATTCGGTAGGGTAGGGAC 58.664 60.000 0.00 0.00 0.00 4.46
1417 1873 1.725557 GACGATCTGCTGGCGGTAGA 61.726 60.000 16.64 16.64 40.72 2.59
1418 1874 1.007964 CGATCTGCTGGCGGTAGAG 60.008 63.158 18.97 3.46 39.86 2.43
1419 1875 1.729470 CGATCTGCTGGCGGTAGAGT 61.729 60.000 18.97 7.94 39.86 3.24
1420 1876 0.461961 GATCTGCTGGCGGTAGAGTT 59.538 55.000 18.97 3.78 39.86 3.01
1421 1877 1.681793 GATCTGCTGGCGGTAGAGTTA 59.318 52.381 18.97 0.00 39.86 2.24
1422 1878 1.103803 TCTGCTGGCGGTAGAGTTAG 58.896 55.000 10.28 0.00 32.96 2.34
1423 1879 0.528684 CTGCTGGCGGTAGAGTTAGC 60.529 60.000 5.36 0.00 0.00 3.09
1489 1945 1.822613 CGTCTCCGCCTGCCTAGTA 60.823 63.158 0.00 0.00 0.00 1.82
1496 1952 1.541233 CCGCCTGCCTAGTATTTCCTG 60.541 57.143 0.00 0.00 0.00 3.86
1538 2000 1.071542 GTTTGTTTGGGTTGGGGATGG 59.928 52.381 0.00 0.00 0.00 3.51
1539 2001 0.563173 TTGTTTGGGTTGGGGATGGA 59.437 50.000 0.00 0.00 0.00 3.41
1568 2032 1.728971 GAGTGTCTGCAATCGAAGGTG 59.271 52.381 0.00 0.00 29.85 4.00
1585 2049 1.666700 GGTGTACTGCAACGTTGAACA 59.333 47.619 31.62 22.90 0.00 3.18
1586 2050 2.096174 GGTGTACTGCAACGTTGAACAA 59.904 45.455 31.62 12.16 0.00 2.83
1643 2122 1.052617 TGGTCTGGTTCGTGATTCCA 58.947 50.000 0.00 0.00 0.00 3.53
1800 2288 8.908678 CATATTTTGCATCGATAACAAGGAATG 58.091 33.333 11.53 11.69 0.00 2.67
1863 2354 4.266976 ACACGCTAATGTGCTATAACGAAC 59.733 41.667 0.00 0.00 43.74 3.95
1865 2356 5.047847 ACGCTAATGTGCTATAACGAACAT 58.952 37.500 0.00 0.00 34.60 2.71
1866 2357 5.522460 ACGCTAATGTGCTATAACGAACATT 59.478 36.000 4.28 4.28 43.72 2.71
1867 2358 6.036735 ACGCTAATGTGCTATAACGAACATTT 59.963 34.615 4.18 0.00 39.56 2.32
1984 2475 0.376152 GGTGCGATCTTCATGTGCAG 59.624 55.000 0.00 0.00 36.03 4.41
2028 2519 2.154854 TGTCTCAGGCGTTTTCAGAG 57.845 50.000 0.00 0.00 0.00 3.35
2129 2620 0.475044 TTTACGGGGTGTTTGAGGCT 59.525 50.000 0.00 0.00 0.00 4.58
2321 2813 6.099341 GGAAATTTTGTGACCGCTCAAATAT 58.901 36.000 0.00 0.00 37.35 1.28
2326 2818 4.678509 TGTGACCGCTCAAATATTTGTC 57.321 40.909 23.95 15.64 39.18 3.18
2432 2926 9.588774 CAATTTATTGCACTTCTCAAACAAATG 57.411 29.630 0.00 0.00 29.99 2.32
2474 2968 3.217681 TGACCAGTTAACCCCAAAGTC 57.782 47.619 0.88 1.75 0.00 3.01
2485 2980 1.202806 CCCCAAAGTCAGAGCTGAACA 60.203 52.381 1.08 0.00 41.85 3.18
2499 2994 8.481314 TCAGAGCTGAACATTCAAGACTATATT 58.519 33.333 0.00 0.00 36.64 1.28
2527 3024 2.526304 TAGCTTGCGTTGTCTTCAGT 57.474 45.000 0.00 0.00 0.00 3.41
2553 3050 4.142924 TGCGTTTGTACACATGCATCTAAG 60.143 41.667 21.92 0.00 0.00 2.18
2562 3059 5.762045 ACACATGCATCTAAGTTTTGACAC 58.238 37.500 0.00 0.00 0.00 3.67
2656 3153 4.368874 TGACACAATGGACACAAAGTTG 57.631 40.909 0.00 0.00 0.00 3.16
2674 3171 4.755411 AGTTGTCTGTCATTACATACCCG 58.245 43.478 0.00 0.00 33.05 5.28
2675 3172 4.222145 AGTTGTCTGTCATTACATACCCGT 59.778 41.667 0.00 0.00 33.05 5.28
2676 3173 4.811969 TGTCTGTCATTACATACCCGTT 57.188 40.909 0.00 0.00 33.05 4.44
2677 3174 5.918426 TGTCTGTCATTACATACCCGTTA 57.082 39.130 0.00 0.00 33.05 3.18
2721 3218 5.869344 GCCATCTGGGAACATTCTTAAAAAC 59.131 40.000 0.00 0.00 41.51 2.43
2873 3384 7.012989 GGCAGTCGTTTGAATATAAAATACCCT 59.987 37.037 0.00 0.00 0.00 4.34
3334 3847 7.389232 TCTACTGATCAATCACACACTTTGAT 58.611 34.615 0.00 0.00 41.50 2.57
3383 3896 1.066143 CCTACAAGGATGCGTGGAACT 60.066 52.381 5.02 0.00 37.67 3.01
3385 3898 0.108585 ACAAGGATGCGTGGAACTGT 59.891 50.000 5.02 0.00 31.75 3.55
3440 3953 4.079253 CAGTGCCATTGGTAAGTAAACCT 58.921 43.478 4.26 0.00 40.44 3.50
3600 4113 7.501559 AGACAAATGGATATCACCAAGATCAAG 59.498 37.037 4.83 0.00 43.47 3.02
3606 4119 6.375174 TGGATATCACCAAGATCAAGTTGTTG 59.625 38.462 4.83 0.36 38.19 3.33
4138 4651 3.242413 CGTCGAAATGTTATTGGAGCCAG 60.242 47.826 0.00 0.00 0.00 4.85
4157 4670 4.497006 GCCAGCATGTCAGATCAATTACAC 60.497 45.833 0.00 0.00 0.00 2.90
4304 4817 4.377021 ACAGTGTGTTTTCTCGCTTATCA 58.623 39.130 0.00 0.00 32.81 2.15
4442 4955 9.705290 AAAGAAAGAGAGATTAGAAGTGAGAAC 57.295 33.333 0.00 0.00 0.00 3.01
4443 4956 8.415950 AGAAAGAGAGATTAGAAGTGAGAACA 57.584 34.615 0.00 0.00 0.00 3.18
4444 4957 8.522830 AGAAAGAGAGATTAGAAGTGAGAACAG 58.477 37.037 0.00 0.00 0.00 3.16
4445 4958 7.775053 AAGAGAGATTAGAAGTGAGAACAGT 57.225 36.000 0.00 0.00 0.00 3.55
4446 4959 8.871629 AAGAGAGATTAGAAGTGAGAACAGTA 57.128 34.615 0.00 0.00 0.00 2.74
4447 4960 8.276252 AGAGAGATTAGAAGTGAGAACAGTAC 57.724 38.462 0.00 0.00 0.00 2.73
4448 4961 7.885922 AGAGAGATTAGAAGTGAGAACAGTACA 59.114 37.037 0.00 0.00 0.00 2.90
4449 4962 7.822658 AGAGATTAGAAGTGAGAACAGTACAC 58.177 38.462 0.00 0.00 35.15 2.90
4450 4963 7.668052 AGAGATTAGAAGTGAGAACAGTACACT 59.332 37.037 0.00 0.00 45.02 3.55
4459 4972 7.952671 AGTGAGAACAGTACACTTATTTCTGA 58.047 34.615 0.00 0.00 41.21 3.27
4460 4973 8.421784 AGTGAGAACAGTACACTTATTTCTGAA 58.578 33.333 0.00 0.00 41.21 3.02
4461 4974 9.042008 GTGAGAACAGTACACTTATTTCTGAAA 57.958 33.333 5.15 5.15 0.00 2.69
4462 4975 9.607988 TGAGAACAGTACACTTATTTCTGAAAA 57.392 29.630 6.95 0.00 0.00 2.29
4524 5037 5.350914 CACAAAAGAGAGGATAGAGCACTTG 59.649 44.000 0.00 0.00 0.00 3.16
4538 5051 1.535437 GCACTTGCTTATGATGCTGGC 60.535 52.381 0.00 0.00 38.21 4.85
4541 5054 2.827322 ACTTGCTTATGATGCTGGCAAA 59.173 40.909 0.00 0.00 41.34 3.68
4625 5138 7.226128 CCAAACGTAGTAGAAGGAAAAGAAAGT 59.774 37.037 0.00 0.00 45.00 2.66
4706 5219 5.272405 ACTTAGGAAAGGAGACTAGTGGA 57.728 43.478 0.00 0.00 42.68 4.02
4758 5271 5.325239 CTTCCTTTGGGGAGAATAACAACT 58.675 41.667 0.00 0.00 46.01 3.16
4782 5295 8.410141 ACTCTACTAATTCTGGAAAAGAGATCG 58.590 37.037 0.00 0.00 35.91 3.69
4793 5306 5.178797 GGAAAAGAGATCGAAGTGAATGGA 58.821 41.667 0.00 0.00 0.00 3.41
4811 5324 1.609320 GGAGCAGAGGACAGGAAACAC 60.609 57.143 0.00 0.00 0.00 3.32
4826 5339 1.512156 AACACCCACATTTCGACGCC 61.512 55.000 0.00 0.00 0.00 5.68
4862 5375 5.621197 TCAATATTGACCTGAACAAACCG 57.379 39.130 14.23 0.00 31.01 4.44
4879 5392 0.392863 CCGGCATCCACAGACAATGA 60.393 55.000 0.00 0.00 0.00 2.57
4881 5394 1.332686 CGGCATCCACAGACAATGATG 59.667 52.381 0.00 0.00 38.08 3.07
4944 5457 9.725019 TTGATATCAACATACAAACTGAGAAGT 57.275 29.630 14.23 0.00 0.00 3.01
4962 5475 3.107642 AGTCCTGTGAAGTAAACACCG 57.892 47.619 0.00 0.00 37.45 4.94
4972 5485 0.661020 GTAAACACCGCACACAAGCT 59.339 50.000 0.00 0.00 0.00 3.74
4973 5486 0.660488 TAAACACCGCACACAAGCTG 59.340 50.000 0.00 0.00 0.00 4.24
4976 5489 0.819259 ACACCGCACACAAGCTGAAT 60.819 50.000 0.00 0.00 0.00 2.57
5079 5592 4.500127 TGATTTGAGCATTGCAGATTTGG 58.500 39.130 11.91 0.00 0.00 3.28
5082 5595 3.793797 TGAGCATTGCAGATTTGGATG 57.206 42.857 11.91 0.00 0.00 3.51
5154 5667 2.555757 GCACTTGACAAGCTGAGGAATT 59.444 45.455 15.24 0.00 0.00 2.17
5156 5669 2.555757 ACTTGACAAGCTGAGGAATTGC 59.444 45.455 15.24 0.00 0.00 3.56
5191 5704 1.001641 AGGTGGCTGGATCAAGCAC 60.002 57.895 23.56 17.70 45.43 4.40
5286 5817 4.498241 TGTTACTGATGTAGCAGCTTCAG 58.502 43.478 17.67 17.67 42.67 3.02
5317 5848 4.087907 TGTCATGAATTGCTCCAATTGGA 58.912 39.130 25.53 25.53 43.05 3.53
5318 5849 4.712829 TGTCATGAATTGCTCCAATTGGAT 59.287 37.500 27.20 12.49 43.05 3.41
5319 5850 5.188163 TGTCATGAATTGCTCCAATTGGATT 59.812 36.000 27.20 18.20 43.05 3.01
5374 5908 5.915628 AGGTAATCCTCCTTTTTGGGATTT 58.084 37.500 10.97 0.00 44.49 2.17
5417 5951 1.032014 GAAGAACCCAGTTGCAGCAA 58.968 50.000 2.83 2.83 0.00 3.91
5418 5952 1.000938 GAAGAACCCAGTTGCAGCAAG 60.001 52.381 8.49 0.00 0.00 4.01
5419 5953 0.183492 AGAACCCAGTTGCAGCAAGA 59.817 50.000 8.49 0.00 0.00 3.02
5460 5994 6.770746 AATACCATACGAGTACAAGACTGT 57.229 37.500 0.00 0.00 39.06 3.55
5464 5998 4.497674 CCATACGAGTACAAGACTGTAGCC 60.498 50.000 0.00 0.00 39.06 3.93
5465 5999 2.792878 ACGAGTACAAGACTGTAGCCT 58.207 47.619 0.00 0.00 39.06 4.58
5517 6062 7.648039 AGTTACATGTGTTTTGGAGGTAAAA 57.352 32.000 9.11 0.00 0.00 1.52
5547 6092 3.197983 AGGGGTTGACTCAATGGGAATA 58.802 45.455 0.00 0.00 0.00 1.75
5590 6136 4.736473 TCATGGTCCCTAATCATCGTAGA 58.264 43.478 0.00 0.00 45.75 2.59
5609 6155 5.473846 CGTAGATCTCTTGGATGCTACCTTA 59.526 44.000 0.00 0.00 34.88 2.69
5756 6312 3.320610 AGAGCAACCCTAGCAGATCTA 57.679 47.619 0.00 0.00 0.00 1.98
5757 6313 3.855668 AGAGCAACCCTAGCAGATCTAT 58.144 45.455 0.00 0.00 0.00 1.98
5758 6314 3.831911 AGAGCAACCCTAGCAGATCTATC 59.168 47.826 0.00 0.00 0.00 2.08
5759 6315 3.831911 GAGCAACCCTAGCAGATCTATCT 59.168 47.826 0.00 0.00 37.72 1.98
5788 6344 1.689273 CTCGCTGGCCCTTATAACTCT 59.311 52.381 0.00 0.00 0.00 3.24
5800 6356 5.065602 CCCTTATAACTCTGGGCGTTTTTAC 59.934 44.000 0.00 0.00 32.49 2.01
5806 6362 3.081804 CTCTGGGCGTTTTTACAGGATT 58.918 45.455 0.00 0.00 0.00 3.01
5832 6388 1.228429 TTTTTGTCCCGAGGCCTGG 60.228 57.895 12.00 9.69 0.00 4.45
5834 6390 2.406002 TTTTGTCCCGAGGCCTGGTC 62.406 60.000 12.00 4.41 0.00 4.02
5842 6438 0.748450 CGAGGCCTGGTCCGTAATTA 59.252 55.000 12.00 0.00 0.00 1.40
5851 6447 2.969950 TGGTCCGTAATTATCCCCTCTG 59.030 50.000 0.00 0.00 0.00 3.35
5858 6454 1.958288 ATTATCCCCTCTGCCGCTAT 58.042 50.000 0.00 0.00 0.00 2.97
5865 6461 3.844211 TCCCCTCTGCCGCTATATTTATT 59.156 43.478 0.00 0.00 0.00 1.40
5867 6463 3.941483 CCCTCTGCCGCTATATTTATTGG 59.059 47.826 0.00 0.00 0.00 3.16
5871 6467 6.703607 CCTCTGCCGCTATATTTATTGGATAG 59.296 42.308 0.00 0.00 0.00 2.08
5874 6470 7.124298 TCTGCCGCTATATTTATTGGATAGAGT 59.876 37.037 0.00 0.00 0.00 3.24
5876 6472 7.764443 TGCCGCTATATTTATTGGATAGAGTTC 59.236 37.037 0.00 0.00 0.00 3.01
5891 6487 4.015872 AGAGTTCGATTTAGGGTTTGCA 57.984 40.909 0.00 0.00 0.00 4.08
5961 6559 0.179045 CCAATTCCCTACTCAGGCGG 60.179 60.000 0.00 0.00 41.08 6.13
5993 6591 0.303493 CGCGCACACACTTTTACAGT 59.697 50.000 8.75 0.00 35.35 3.55
6017 6615 1.153369 CATGTCCGGCGAAGGTCAT 60.153 57.895 9.30 0.00 39.89 3.06
6019 6617 0.828022 ATGTCCGGCGAAGGTCATTA 59.172 50.000 9.30 0.00 36.84 1.90
6032 6630 2.828549 CATTAGTGTGGGGGCCGC 60.829 66.667 14.65 14.65 34.12 6.53
6077 6683 4.025401 CGACACAACGCCAAGGCC 62.025 66.667 5.34 0.00 37.98 5.19
6383 7061 5.689383 TGGTTTTACAAGATCTGTTCTGC 57.311 39.130 0.00 0.00 39.64 4.26
6416 7094 8.958175 TTCGAAGTAATGCAAATTCGTTTTAT 57.042 26.923 17.41 0.00 43.66 1.40
6442 7121 8.579682 AAATTCAAGTTTGTTGCTCTAATCAC 57.420 30.769 0.00 0.00 0.00 3.06
6566 7262 8.665685 GTGTAAGTTGAAGTTGAAGAAAAGAGA 58.334 33.333 0.00 0.00 0.00 3.10
6574 7278 7.279981 TGAAGTTGAAGAAAAGAGATTTGACGA 59.720 33.333 0.00 0.00 0.00 4.20
6575 7279 6.949449 AGTTGAAGAAAAGAGATTTGACGAC 58.051 36.000 0.00 0.00 0.00 4.34
6636 7340 1.737793 CAAATGGGTCGGTCTTAGCAC 59.262 52.381 0.00 0.00 0.00 4.40
6645 7349 1.660560 GGTCTTAGCACGCCGACCTA 61.661 60.000 12.77 0.00 42.02 3.08
6653 7357 0.949397 CACGCCGACCTAGTAGCATA 59.051 55.000 0.00 0.00 0.00 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.057922 AGAATGAGGTGTGGGTTGACT 58.942 47.619 0.00 0.00 0.00 3.41
1 2 2.154462 CAGAATGAGGTGTGGGTTGAC 58.846 52.381 0.00 0.00 39.69 3.18
2 3 1.073763 CCAGAATGAGGTGTGGGTTGA 59.926 52.381 0.00 0.00 39.69 3.18
3 4 1.538047 CCAGAATGAGGTGTGGGTTG 58.462 55.000 0.00 0.00 39.69 3.77
4 5 0.251341 GCCAGAATGAGGTGTGGGTT 60.251 55.000 0.00 0.00 39.69 4.11
5 6 1.380302 GCCAGAATGAGGTGTGGGT 59.620 57.895 0.00 0.00 39.69 4.51
6 7 0.033796 ATGCCAGAATGAGGTGTGGG 60.034 55.000 0.00 0.00 39.69 4.61
7 8 1.475280 CAATGCCAGAATGAGGTGTGG 59.525 52.381 0.00 0.00 39.69 4.17
8 9 1.135199 GCAATGCCAGAATGAGGTGTG 60.135 52.381 0.00 0.00 39.69 3.82
9 10 1.180029 GCAATGCCAGAATGAGGTGT 58.820 50.000 0.00 0.00 39.69 4.16
10 11 1.179152 TGCAATGCCAGAATGAGGTG 58.821 50.000 1.53 0.00 39.69 4.00
11 12 1.547372 GTTGCAATGCCAGAATGAGGT 59.453 47.619 0.59 0.00 39.69 3.85
12 13 1.468565 CGTTGCAATGCCAGAATGAGG 60.469 52.381 5.57 0.00 39.69 3.86
13 14 1.200716 ACGTTGCAATGCCAGAATGAG 59.799 47.619 18.61 0.00 39.69 2.90
14 15 1.246649 ACGTTGCAATGCCAGAATGA 58.753 45.000 18.61 0.00 39.69 2.57
15 16 2.419673 TCTACGTTGCAATGCCAGAATG 59.580 45.455 18.61 0.00 0.00 2.67
16 17 2.420022 GTCTACGTTGCAATGCCAGAAT 59.580 45.455 18.61 0.50 0.00 2.40
17 18 1.804151 GTCTACGTTGCAATGCCAGAA 59.196 47.619 18.61 4.30 0.00 3.02
18 19 1.270571 TGTCTACGTTGCAATGCCAGA 60.271 47.619 18.61 17.05 0.00 3.86
19 20 1.129251 CTGTCTACGTTGCAATGCCAG 59.871 52.381 18.61 15.13 0.00 4.85
20 21 1.155889 CTGTCTACGTTGCAATGCCA 58.844 50.000 18.61 9.19 0.00 4.92
21 22 0.447801 CCTGTCTACGTTGCAATGCC 59.552 55.000 18.61 5.09 0.00 4.40
22 23 1.135972 CACCTGTCTACGTTGCAATGC 60.136 52.381 18.61 0.00 0.00 3.56
23 24 2.157668 GTCACCTGTCTACGTTGCAATG 59.842 50.000 17.16 17.16 0.00 2.82
24 25 2.224185 TGTCACCTGTCTACGTTGCAAT 60.224 45.455 0.59 0.00 0.00 3.56
25 26 1.137282 TGTCACCTGTCTACGTTGCAA 59.863 47.619 0.00 0.00 0.00 4.08
26 27 0.747852 TGTCACCTGTCTACGTTGCA 59.252 50.000 0.00 0.00 0.00 4.08
27 28 1.726791 CATGTCACCTGTCTACGTTGC 59.273 52.381 0.00 0.00 0.00 4.17
28 29 3.297830 TCATGTCACCTGTCTACGTTG 57.702 47.619 0.00 0.00 0.00 4.10
29 30 3.258372 ACATCATGTCACCTGTCTACGTT 59.742 43.478 0.00 0.00 0.00 3.99
30 31 2.826128 ACATCATGTCACCTGTCTACGT 59.174 45.455 0.00 0.00 0.00 3.57
31 32 3.119495 TCACATCATGTCACCTGTCTACG 60.119 47.826 0.00 0.00 0.00 3.51
32 33 4.456280 TCACATCATGTCACCTGTCTAC 57.544 45.455 0.00 0.00 0.00 2.59
33 34 5.221621 TGTTTCACATCATGTCACCTGTCTA 60.222 40.000 0.00 0.00 0.00 2.59
34 35 4.067896 GTTTCACATCATGTCACCTGTCT 58.932 43.478 0.00 0.00 0.00 3.41
35 36 3.814842 TGTTTCACATCATGTCACCTGTC 59.185 43.478 0.00 0.00 0.00 3.51
36 37 3.819368 TGTTTCACATCATGTCACCTGT 58.181 40.909 0.00 0.00 0.00 4.00
37 38 4.834357 TTGTTTCACATCATGTCACCTG 57.166 40.909 0.00 0.00 0.00 4.00
38 39 5.771666 AGATTTGTTTCACATCATGTCACCT 59.228 36.000 0.00 0.00 0.00 4.00
39 40 6.017400 AGATTTGTTTCACATCATGTCACC 57.983 37.500 0.00 0.00 0.00 4.02
40 41 9.708222 GTATAGATTTGTTTCACATCATGTCAC 57.292 33.333 0.00 0.00 0.00 3.67
41 42 9.671279 AGTATAGATTTGTTTCACATCATGTCA 57.329 29.630 0.00 0.00 0.00 3.58
49 50 9.157104 TGCGATTTAGTATAGATTTGTTTCACA 57.843 29.630 0.00 0.00 0.00 3.58
50 51 9.982291 TTGCGATTTAGTATAGATTTGTTTCAC 57.018 29.630 0.00 0.00 0.00 3.18
56 57 9.318041 CGGAATTTGCGATTTAGTATAGATTTG 57.682 33.333 4.07 0.00 30.86 2.32
57 58 9.052759 ACGGAATTTGCGATTTAGTATAGATTT 57.947 29.630 17.44 0.00 34.49 2.17
58 59 8.603242 ACGGAATTTGCGATTTAGTATAGATT 57.397 30.769 17.44 0.00 34.49 2.40
59 60 8.603242 AACGGAATTTGCGATTTAGTATAGAT 57.397 30.769 17.44 0.00 34.49 1.98
60 61 9.701098 ATAACGGAATTTGCGATTTAGTATAGA 57.299 29.630 17.44 0.00 34.49 1.98
61 62 9.741168 CATAACGGAATTTGCGATTTAGTATAG 57.259 33.333 17.44 0.00 34.49 1.31
62 63 9.263538 ACATAACGGAATTTGCGATTTAGTATA 57.736 29.630 17.44 0.00 34.49 1.47
63 64 8.149973 ACATAACGGAATTTGCGATTTAGTAT 57.850 30.769 17.44 2.48 34.49 2.12
64 65 7.278203 TGACATAACGGAATTTGCGATTTAGTA 59.722 33.333 17.44 0.40 34.49 1.82
65 66 6.092944 TGACATAACGGAATTTGCGATTTAGT 59.907 34.615 17.44 8.28 34.49 2.24
66 67 6.410914 GTGACATAACGGAATTTGCGATTTAG 59.589 38.462 17.44 5.38 34.49 1.85
67 68 6.128254 TGTGACATAACGGAATTTGCGATTTA 60.128 34.615 17.44 6.58 34.49 1.40
73 74 4.083537 TGAGTGTGACATAACGGAATTTGC 60.084 41.667 0.00 0.00 0.00 3.68
74 75 5.605564 TGAGTGTGACATAACGGAATTTG 57.394 39.130 0.00 0.00 0.00 2.32
79 80 2.034939 ACGTTGAGTGTGACATAACGGA 59.965 45.455 24.91 0.00 41.00 4.69
80 81 2.154963 CACGTTGAGTGTGACATAACGG 59.845 50.000 24.91 15.70 45.51 4.44
93 94 2.182014 TCGTAATGATCGCACGTTGAG 58.818 47.619 11.69 0.00 37.02 3.02
97 98 4.593597 AAAAATCGTAATGATCGCACGT 57.406 36.364 11.69 0.00 35.84 4.49
148 152 7.599630 ACAAATATGTTTTGGCATTGATGTC 57.400 32.000 0.66 0.00 35.91 3.06
189 193 9.643693 ACATTGCAATCTTAAACAAAGGATTAG 57.356 29.630 9.53 0.00 35.75 1.73
246 250 8.231692 TGTATGTTTCCTTTGTTTGATCAGAA 57.768 30.769 0.00 0.00 0.00 3.02
263 267 7.454380 TCCTTCCAAAATCCATCTTGTATGTTT 59.546 33.333 0.00 0.00 0.00 2.83
305 309 9.712305 GCATCTTTAACTGACATGGTATACTAT 57.288 33.333 2.25 0.00 0.00 2.12
316 320 3.038788 TGCGAGCATCTTTAACTGACA 57.961 42.857 0.00 0.00 0.00 3.58
363 367 8.777865 TTCTGATCTAGGAGTATTTGTGTTTG 57.222 34.615 0.00 0.00 0.00 2.93
364 368 9.965902 AATTCTGATCTAGGAGTATTTGTGTTT 57.034 29.630 0.00 0.00 0.00 2.83
366 370 8.762645 TCAATTCTGATCTAGGAGTATTTGTGT 58.237 33.333 0.00 0.00 0.00 3.72
367 371 9.605275 TTCAATTCTGATCTAGGAGTATTTGTG 57.395 33.333 0.00 0.00 0.00 3.33
373 377 9.883293 TTCCTATTCAATTCTGATCTAGGAGTA 57.117 33.333 11.07 1.13 42.07 2.59
374 378 8.789767 TTCCTATTCAATTCTGATCTAGGAGT 57.210 34.615 11.07 0.00 42.07 3.85
401 405 1.468127 CACATGTTCGCCTGTGCATTA 59.532 47.619 0.00 0.00 37.04 1.90
403 407 0.890542 ACACATGTTCGCCTGTGCAT 60.891 50.000 0.00 0.00 44.21 3.96
408 412 2.995466 AATCAACACATGTTCGCCTG 57.005 45.000 0.00 0.00 35.83 4.85
418 422 7.068103 ACCAACTCATCAGTTTTAATCAACACA 59.932 33.333 0.00 0.00 41.24 3.72
420 424 7.284261 TCACCAACTCATCAGTTTTAATCAACA 59.716 33.333 0.00 0.00 41.24 3.33
433 437 7.097192 GTGTTAGATAGTTCACCAACTCATCA 58.903 38.462 0.00 0.00 42.27 3.07
451 484 0.175760 GGATGCCTGCTCGTGTTAGA 59.824 55.000 0.00 0.00 0.00 2.10
479 512 1.411246 TCGGTACCTGAATGGATTCCG 59.589 52.381 10.90 0.00 42.62 4.30
481 514 2.158957 TGCTCGGTACCTGAATGGATTC 60.159 50.000 10.90 0.00 39.71 2.52
491 524 2.119886 GCATCTCTGCTCGGTACCT 58.880 57.895 10.90 0.00 45.32 3.08
516 549 5.128033 TCTCCCTTGCCAATTCATCATTA 57.872 39.130 0.00 0.00 0.00 1.90
517 550 3.985127 TCTCCCTTGCCAATTCATCATT 58.015 40.909 0.00 0.00 0.00 2.57
518 551 3.675348 TCTCCCTTGCCAATTCATCAT 57.325 42.857 0.00 0.00 0.00 2.45
519 552 3.675348 ATCTCCCTTGCCAATTCATCA 57.325 42.857 0.00 0.00 0.00 3.07
520 553 4.403432 TCAAATCTCCCTTGCCAATTCATC 59.597 41.667 0.00 0.00 0.00 2.92
521 554 4.355549 TCAAATCTCCCTTGCCAATTCAT 58.644 39.130 0.00 0.00 0.00 2.57
522 555 3.777087 TCAAATCTCCCTTGCCAATTCA 58.223 40.909 0.00 0.00 0.00 2.57
523 556 6.661304 ATATCAAATCTCCCTTGCCAATTC 57.339 37.500 0.00 0.00 0.00 2.17
524 557 6.612456 TCAATATCAAATCTCCCTTGCCAATT 59.388 34.615 0.00 0.00 0.00 2.32
525 558 6.041296 GTCAATATCAAATCTCCCTTGCCAAT 59.959 38.462 0.00 0.00 0.00 3.16
526 559 5.360714 GTCAATATCAAATCTCCCTTGCCAA 59.639 40.000 0.00 0.00 0.00 4.52
527 560 4.889409 GTCAATATCAAATCTCCCTTGCCA 59.111 41.667 0.00 0.00 0.00 4.92
528 561 4.023707 CGTCAATATCAAATCTCCCTTGCC 60.024 45.833 0.00 0.00 0.00 4.52
534 567 4.084118 GCTGCTCGTCAATATCAAATCTCC 60.084 45.833 0.00 0.00 0.00 3.71
594 630 9.755064 CAAGAATTACGAAACGAAATGAGTAAT 57.245 29.630 0.00 0.00 36.65 1.89
601 637 7.411274 TCACAACAAGAATTACGAAACGAAAT 58.589 30.769 0.00 0.00 0.00 2.17
605 641 7.603297 AAATCACAACAAGAATTACGAAACG 57.397 32.000 0.00 0.00 0.00 3.60
617 654 6.491394 TCGGTTCAACTAAAATCACAACAAG 58.509 36.000 0.00 0.00 0.00 3.16
622 659 4.963373 TCCTCGGTTCAACTAAAATCACA 58.037 39.130 0.00 0.00 0.00 3.58
638 675 0.741221 GGCTTGTTGCTACTCCTCGG 60.741 60.000 0.00 0.00 42.39 4.63
652 690 1.727880 CGCAACAATTGGATTGGCTTG 59.272 47.619 10.83 4.49 44.42 4.01
660 698 1.529226 ATCGGTTCGCAACAATTGGA 58.471 45.000 10.83 0.00 0.00 3.53
665 703 2.814919 ACCATAAATCGGTTCGCAACAA 59.185 40.909 0.00 0.00 30.53 2.83
667 705 3.168193 CAACCATAAATCGGTTCGCAAC 58.832 45.455 0.00 0.00 45.06 4.17
677 715 7.004086 TCCACCTAATCATCCAACCATAAATC 58.996 38.462 0.00 0.00 0.00 2.17
678 716 6.777580 GTCCACCTAATCATCCAACCATAAAT 59.222 38.462 0.00 0.00 0.00 1.40
680 718 5.431731 AGTCCACCTAATCATCCAACCATAA 59.568 40.000 0.00 0.00 0.00 1.90
681 719 4.975147 AGTCCACCTAATCATCCAACCATA 59.025 41.667 0.00 0.00 0.00 2.74
682 720 3.788142 AGTCCACCTAATCATCCAACCAT 59.212 43.478 0.00 0.00 0.00 3.55
685 723 3.941483 CACAGTCCACCTAATCATCCAAC 59.059 47.826 0.00 0.00 0.00 3.77
693 731 3.967987 GAGGATACCACAGTCCACCTAAT 59.032 47.826 0.00 0.00 36.96 1.73
704 742 2.505407 CTGATGGGTTGAGGATACCACA 59.495 50.000 0.00 0.00 37.40 4.17
705 743 2.771943 TCTGATGGGTTGAGGATACCAC 59.228 50.000 0.00 0.00 37.40 4.16
708 746 4.407296 AGAACTCTGATGGGTTGAGGATAC 59.593 45.833 0.00 0.00 32.58 2.24
714 752 6.013379 ACAAGATTAGAACTCTGATGGGTTGA 60.013 38.462 0.00 0.00 0.00 3.18
717 755 5.738909 CACAAGATTAGAACTCTGATGGGT 58.261 41.667 0.00 0.00 0.00 4.51
726 764 9.250624 GATAAATACGAGCACAAGATTAGAACT 57.749 33.333 0.00 0.00 0.00 3.01
730 768 7.867909 TCAGGATAAATACGAGCACAAGATTAG 59.132 37.037 0.00 0.00 0.00 1.73
731 769 7.722363 TCAGGATAAATACGAGCACAAGATTA 58.278 34.615 0.00 0.00 0.00 1.75
733 771 6.161855 TCAGGATAAATACGAGCACAAGAT 57.838 37.500 0.00 0.00 0.00 2.40
735 773 6.851222 ATTCAGGATAAATACGAGCACAAG 57.149 37.500 0.00 0.00 0.00 3.16
754 793 7.309177 TCGCCGAAAATTCTGAAATAAATTCA 58.691 30.769 0.00 0.00 45.71 2.57
777 816 3.853330 CCCAGTGAACGCGCATCG 61.853 66.667 5.73 0.00 45.38 3.84
786 825 1.275291 GGAACGTCTCATCCCAGTGAA 59.725 52.381 0.00 0.00 0.00 3.18
796 835 2.133281 TAATCGAGGGGAACGTCTCA 57.867 50.000 0.00 0.00 42.98 3.27
808 847 2.552743 TCGTAGGCACCTCATAATCGAG 59.447 50.000 0.00 0.00 0.00 4.04
813 852 2.628178 CCTCATCGTAGGCACCTCATAA 59.372 50.000 0.00 0.00 0.00 1.90
816 855 0.033503 TCCTCATCGTAGGCACCTCA 60.034 55.000 0.00 0.00 36.51 3.86
821 860 2.134287 GCCCTCCTCATCGTAGGCA 61.134 63.158 0.00 0.00 40.20 4.75
829 868 1.333636 CGAGAACAGGCCCTCCTCAT 61.334 60.000 0.00 0.00 41.93 2.90
833 872 4.821589 CGCGAGAACAGGCCCTCC 62.822 72.222 0.00 0.00 0.00 4.30
837 876 4.090057 GTTGCGCGAGAACAGGCC 62.090 66.667 12.10 0.00 0.00 5.19
838 877 2.187599 ATTGTTGCGCGAGAACAGGC 62.188 55.000 12.10 0.00 34.41 4.85
839 878 1.075542 TATTGTTGCGCGAGAACAGG 58.924 50.000 12.10 0.00 34.41 4.00
840 879 2.873170 TTATTGTTGCGCGAGAACAG 57.127 45.000 12.10 0.00 34.41 3.16
841 880 2.350007 GGTTTATTGTTGCGCGAGAACA 60.350 45.455 12.10 15.44 32.22 3.18
842 881 2.239201 GGTTTATTGTTGCGCGAGAAC 58.761 47.619 12.10 12.65 0.00 3.01
843 882 1.874231 TGGTTTATTGTTGCGCGAGAA 59.126 42.857 12.10 9.97 0.00 2.87
846 885 1.333931 TGTTGGTTTATTGTTGCGCGA 59.666 42.857 12.10 0.00 0.00 5.87
847 886 1.759994 TGTTGGTTTATTGTTGCGCG 58.240 45.000 0.00 0.00 0.00 6.86
849 888 4.545610 ACAGATGTTGGTTTATTGTTGCG 58.454 39.130 0.00 0.00 0.00 4.85
850 889 6.092748 CCTACAGATGTTGGTTTATTGTTGC 58.907 40.000 5.42 0.00 36.42 4.17
851 890 6.432783 TCCCTACAGATGTTGGTTTATTGTTG 59.567 38.462 11.62 0.00 38.91 3.33
853 892 6.134535 TCCCTACAGATGTTGGTTTATTGT 57.865 37.500 11.62 0.00 38.91 2.71
854 893 8.924511 ATATCCCTACAGATGTTGGTTTATTG 57.075 34.615 11.62 0.00 38.91 1.90
858 897 9.166222 TGTATATATCCCTACAGATGTTGGTTT 57.834 33.333 11.62 2.73 38.91 3.27
859 898 8.594550 GTGTATATATCCCTACAGATGTTGGTT 58.405 37.037 11.62 3.03 38.91 3.67
860 899 7.956315 AGTGTATATATCCCTACAGATGTTGGT 59.044 37.037 11.62 0.00 38.91 3.67
863 902 9.175312 CGTAGTGTATATATCCCTACAGATGTT 57.825 37.037 12.90 0.00 0.00 2.71
865 904 8.734218 ACGTAGTGTATATATCCCTACAGATG 57.266 38.462 12.90 3.39 42.51 2.90
883 922 6.968250 TGGGTTGGTTTATTTTTACGTAGTG 58.032 36.000 0.00 0.00 45.73 2.74
885 924 7.592164 CAGTTGGGTTGGTTTATTTTTACGTAG 59.408 37.037 0.00 0.00 0.00 3.51
886 925 7.067981 ACAGTTGGGTTGGTTTATTTTTACGTA 59.932 33.333 0.00 0.00 0.00 3.57
887 926 6.127394 ACAGTTGGGTTGGTTTATTTTTACGT 60.127 34.615 0.00 0.00 0.00 3.57
888 927 6.274579 ACAGTTGGGTTGGTTTATTTTTACG 58.725 36.000 0.00 0.00 0.00 3.18
889 928 6.702723 GGACAGTTGGGTTGGTTTATTTTTAC 59.297 38.462 0.00 0.00 0.00 2.01
890 929 6.612049 AGGACAGTTGGGTTGGTTTATTTTTA 59.388 34.615 0.00 0.00 0.00 1.52
891 930 5.427157 AGGACAGTTGGGTTGGTTTATTTTT 59.573 36.000 0.00 0.00 0.00 1.94
896 1297 2.485835 CGAGGACAGTTGGGTTGGTTTA 60.486 50.000 0.00 0.00 0.00 2.01
899 1300 1.450211 CGAGGACAGTTGGGTTGGT 59.550 57.895 0.00 0.00 0.00 3.67
904 1305 4.680237 TGCGCGAGGACAGTTGGG 62.680 66.667 12.10 0.00 0.00 4.12
909 1310 3.767230 CGTGTTGCGCGAGGACAG 61.767 66.667 12.10 1.59 39.94 3.51
1091 1535 2.228059 TGGCGACGGGTTTTGATTTTA 58.772 42.857 0.00 0.00 0.00 1.52
1182 1626 3.732219 TCGATAACTATAAGTTTGCGGCG 59.268 43.478 0.51 0.51 39.51 6.46
1183 1627 4.374707 CGTCGATAACTATAAGTTTGCGGC 60.375 45.833 0.00 0.00 39.51 6.53
1184 1628 4.971830 TCGTCGATAACTATAAGTTTGCGG 59.028 41.667 0.00 0.00 39.51 5.69
1192 1636 4.974275 GCTGCTTGTCGTCGATAACTATAA 59.026 41.667 0.00 0.00 0.00 0.98
1203 1650 2.858868 CTGCTGCTGCTTGTCGTC 59.141 61.111 17.00 0.00 40.48 4.20
1237 1693 2.456119 GCCGATGACAAGTGAGGCG 61.456 63.158 0.00 0.00 34.94 5.52
1238 1694 2.456119 CGCCGATGACAAGTGAGGC 61.456 63.158 0.00 0.00 41.03 4.70
1240 1696 2.456119 GCCGCCGATGACAAGTGAG 61.456 63.158 0.00 0.00 0.00 3.51
1241 1697 2.434185 GCCGCCGATGACAAGTGA 60.434 61.111 0.00 0.00 0.00 3.41
1242 1698 2.434884 AGCCGCCGATGACAAGTG 60.435 61.111 0.00 0.00 0.00 3.16
1243 1699 2.434884 CAGCCGCCGATGACAAGT 60.435 61.111 0.00 0.00 0.00 3.16
1244 1700 2.434884 ACAGCCGCCGATGACAAG 60.435 61.111 0.00 0.00 0.00 3.16
1246 1702 4.451150 GGACAGCCGCCGATGACA 62.451 66.667 0.00 0.00 0.00 3.58
1248 1704 3.838271 GAGGACAGCCGCCGATGA 61.838 66.667 0.00 0.00 39.96 2.92
1249 1705 4.899239 GGAGGACAGCCGCCGATG 62.899 72.222 0.00 0.00 44.55 3.84
1311 1767 2.943345 GCCATACGCGCGAAGGATG 61.943 63.158 39.36 28.59 0.00 3.51
1378 1834 0.680061 CCTACCCTACCGAATCCAGC 59.320 60.000 0.00 0.00 0.00 4.85
1393 1849 1.068250 GCCAGCAGATCGTCCCTAC 59.932 63.158 0.00 0.00 0.00 3.18
1400 1856 1.007964 CTCTACCGCCAGCAGATCG 60.008 63.158 0.00 0.00 0.00 3.69
1417 1873 0.608640 CCCGAGTTGGTGAGCTAACT 59.391 55.000 0.00 0.00 46.84 2.24
1418 1874 0.391263 CCCCGAGTTGGTGAGCTAAC 60.391 60.000 0.00 0.00 36.49 2.34
1419 1875 1.980052 CCCCGAGTTGGTGAGCTAA 59.020 57.895 0.00 0.00 35.15 3.09
1420 1876 2.656069 GCCCCGAGTTGGTGAGCTA 61.656 63.158 0.00 0.00 35.15 3.32
1421 1877 4.021925 GCCCCGAGTTGGTGAGCT 62.022 66.667 0.00 0.00 35.15 4.09
1422 1878 2.579684 CTAGCCCCGAGTTGGTGAGC 62.580 65.000 0.00 0.00 35.15 4.26
1423 1879 1.517832 CTAGCCCCGAGTTGGTGAG 59.482 63.158 0.00 0.00 35.15 3.51
1489 1945 4.559862 AGATCGGAACTGAACAGGAAAT 57.440 40.909 6.76 0.00 0.00 2.17
1496 1952 9.543018 CAAACTAAAAATAGATCGGAACTGAAC 57.457 33.333 0.00 0.00 0.00 3.18
1538 2000 1.569479 GCAGACACTCGCAAACCCTC 61.569 60.000 0.00 0.00 0.00 4.30
1539 2001 1.598130 GCAGACACTCGCAAACCCT 60.598 57.895 0.00 0.00 0.00 4.34
1564 2026 1.937899 GTTCAACGTTGCAGTACACCT 59.062 47.619 23.47 0.00 0.00 4.00
1568 2032 4.138817 CGTATTGTTCAACGTTGCAGTAC 58.861 43.478 23.47 21.98 34.48 2.73
1585 2049 6.068473 TGCGAGATGTATCTTGTACGTATT 57.932 37.500 0.00 0.00 39.90 1.89
1586 2050 5.684550 TGCGAGATGTATCTTGTACGTAT 57.315 39.130 0.00 0.00 39.90 3.06
1599 2063 0.529337 CCAGCGATCTTGCGAGATGT 60.529 55.000 21.56 0.00 42.66 3.06
1643 2122 0.027586 GAACAGAACAAACGCGCAGT 59.972 50.000 5.73 3.19 0.00 4.40
1711 2190 4.722526 TCCCAGGTCATACAATAATGGG 57.277 45.455 0.76 0.76 46.01 4.00
1720 2199 0.178990 GGCCCAATCCCAGGTCATAC 60.179 60.000 0.00 0.00 0.00 2.39
1726 2205 0.545071 AAAACAGGCCCAATCCCAGG 60.545 55.000 0.00 0.00 0.00 4.45
1777 2263 5.750067 GCATTCCTTGTTATCGATGCAAAAT 59.250 36.000 8.54 8.06 39.58 1.82
1781 2268 3.313249 CAGCATTCCTTGTTATCGATGCA 59.687 43.478 8.54 4.22 41.60 3.96
1786 2273 7.864686 TCATAATTCAGCATTCCTTGTTATCG 58.135 34.615 0.00 0.00 0.00 2.92
1800 2288 7.268199 TCATCCATGAAACTCATAATTCAGC 57.732 36.000 0.00 0.00 38.80 4.26
2028 2519 4.143986 AGGGCTGATACTCTAAAGCAAC 57.856 45.455 0.00 0.00 37.40 4.17
2129 2620 1.556373 CCAGTCCACCATCAGAGGCA 61.556 60.000 0.00 0.00 0.00 4.75
2291 2782 3.855524 GCGGTCACAAAATTTCCAACGAT 60.856 43.478 0.00 0.00 0.00 3.73
2306 2798 4.678509 TGACAAATATTTGAGCGGTCAC 57.321 40.909 30.18 2.87 40.55 3.67
2342 2834 4.768968 AGCATCTTCATGGCACTAAAAGTT 59.231 37.500 0.00 0.00 0.00 2.66
2432 2926 5.994668 TCATTTGCTTTTATTCCACCCAAAC 59.005 36.000 0.00 0.00 0.00 2.93
2474 2968 8.659925 AATATAGTCTTGAATGTTCAGCTCTG 57.340 34.615 0.00 0.00 38.61 3.35
2522 3019 2.742589 TGTGTACAAACGCAACACTGAA 59.257 40.909 0.00 0.00 42.98 3.02
2591 3088 5.048083 GGCACCTTACATGATCTTTTGTCAA 60.048 40.000 0.00 0.00 0.00 3.18
2656 3153 8.876275 TTTATAACGGGTATGTAATGACAGAC 57.124 34.615 0.00 0.00 45.29 3.51
2674 3171 7.094377 TGGCTGAAGAAACCACTCATTTATAAC 60.094 37.037 0.00 0.00 0.00 1.89
2675 3172 6.945435 TGGCTGAAGAAACCACTCATTTATAA 59.055 34.615 0.00 0.00 0.00 0.98
2676 3173 6.480763 TGGCTGAAGAAACCACTCATTTATA 58.519 36.000 0.00 0.00 0.00 0.98
2677 3174 5.324409 TGGCTGAAGAAACCACTCATTTAT 58.676 37.500 0.00 0.00 0.00 1.40
2721 3218 4.916870 TGTTCGTCCGATGTCATACTTAG 58.083 43.478 0.00 0.00 0.00 2.18
2768 3266 6.131544 ACTGTGTAACTGAAAACCATGAAC 57.868 37.500 0.00 0.00 39.30 3.18
2825 3336 5.701290 GCCTAGTACTGTAATAAATGCAGGG 59.299 44.000 5.39 0.00 45.15 4.45
2826 3337 6.288294 TGCCTAGTACTGTAATAAATGCAGG 58.712 40.000 5.39 0.37 45.15 4.85
2873 3384 5.883673 CCCAGAACCCAGAACGAATTATAAA 59.116 40.000 0.00 0.00 0.00 1.40
3334 3847 6.770785 AGAATAGTTTGTTCCAGCTGTTACAA 59.229 34.615 20.63 20.63 0.00 2.41
3383 3896 4.155099 CGTGCCTCAAAATTATGTGGTACA 59.845 41.667 14.02 0.00 44.61 2.90
3385 3898 4.580868 TCGTGCCTCAAAATTATGTGGTA 58.419 39.130 0.00 0.00 36.55 3.25
3440 3953 3.181424 TGGGATCAATTTGGACTCCAACA 60.181 43.478 10.25 2.98 43.82 3.33
3600 4113 7.830940 TTGGATATGATTGATTTGCAACAAC 57.169 32.000 0.00 0.00 39.78 3.32
4138 4651 5.550232 TGTGTGTAATTGATCTGACATGC 57.450 39.130 0.00 0.00 0.00 4.06
4304 4817 1.134220 TGAAGAGGTTGTTGCTTCGGT 60.134 47.619 0.00 0.00 40.58 4.69
4460 4973 7.504403 TGTTCTCACTTCTGATCTCTCTTTTT 58.496 34.615 0.00 0.00 0.00 1.94
4461 4974 7.060383 TGTTCTCACTTCTGATCTCTCTTTT 57.940 36.000 0.00 0.00 0.00 2.27
4462 4975 6.662865 TGTTCTCACTTCTGATCTCTCTTT 57.337 37.500 0.00 0.00 0.00 2.52
4463 4976 6.436847 TCATGTTCTCACTTCTGATCTCTCTT 59.563 38.462 0.00 0.00 0.00 2.85
4464 4977 5.951148 TCATGTTCTCACTTCTGATCTCTCT 59.049 40.000 0.00 0.00 0.00 3.10
4465 4978 6.035843 GTCATGTTCTCACTTCTGATCTCTC 58.964 44.000 0.00 0.00 0.00 3.20
4466 4979 5.479724 TGTCATGTTCTCACTTCTGATCTCT 59.520 40.000 0.00 0.00 0.00 3.10
4467 4980 5.576384 GTGTCATGTTCTCACTTCTGATCTC 59.424 44.000 0.00 0.00 0.00 2.75
4468 4981 5.245751 AGTGTCATGTTCTCACTTCTGATCT 59.754 40.000 0.00 0.00 39.00 2.75
4469 4982 5.477510 AGTGTCATGTTCTCACTTCTGATC 58.522 41.667 0.00 0.00 39.00 2.92
4470 4983 5.480642 AGTGTCATGTTCTCACTTCTGAT 57.519 39.130 0.00 0.00 39.00 2.90
4471 4984 4.944619 AGTGTCATGTTCTCACTTCTGA 57.055 40.909 0.00 0.00 39.00 3.27
4472 4985 7.664082 AATAAGTGTCATGTTCTCACTTCTG 57.336 36.000 21.16 0.00 45.36 3.02
4473 4986 8.153550 AGAAATAAGTGTCATGTTCTCACTTCT 58.846 33.333 21.16 14.24 45.36 2.85
4474 4987 8.316640 AGAAATAAGTGTCATGTTCTCACTTC 57.683 34.615 21.16 13.10 45.36 3.01
4476 4989 7.445121 TGAGAAATAAGTGTCATGTTCTCACT 58.555 34.615 13.94 11.29 43.55 3.41
4477 4990 7.658179 TGAGAAATAAGTGTCATGTTCTCAC 57.342 36.000 13.94 9.68 43.55 3.51
4478 4991 7.216494 TGTGAGAAATAAGTGTCATGTTCTCA 58.784 34.615 13.94 13.94 45.22 3.27
4524 5037 2.165030 ACTGTTTGCCAGCATCATAAGC 59.835 45.455 0.00 0.00 45.68 3.09
4552 5065 5.473162 CAGGTTATGTCAATGGACTGTTCAA 59.527 40.000 1.02 0.00 44.61 2.69
4625 5138 1.656587 TTAAGAAGGGAGGCTCTGCA 58.343 50.000 15.23 0.00 0.00 4.41
4669 5182 0.038021 TAAGTTGCCATCCAGCTGCA 59.962 50.000 8.66 0.00 34.99 4.41
4706 5219 6.510536 CACAAGCTTTCTCCTCTTCATTTTT 58.489 36.000 0.00 0.00 0.00 1.94
4745 5258 9.535878 CCAGAATTAGTAGAGTTGTTATTCTCC 57.464 37.037 0.00 0.00 30.72 3.71
4758 5271 8.521170 TCGATCTCTTTTCCAGAATTAGTAGA 57.479 34.615 0.00 0.00 0.00 2.59
4782 5295 2.027745 TGTCCTCTGCTCCATTCACTTC 60.028 50.000 0.00 0.00 0.00 3.01
4793 5306 0.398318 GGTGTTTCCTGTCCTCTGCT 59.602 55.000 0.00 0.00 0.00 4.24
4811 5324 2.433491 TCGGCGTCGAAATGTGGG 60.433 61.111 10.97 0.00 43.03 4.61
4826 5339 6.258160 GTCAATATTGAACTTGTTCCCATCG 58.742 40.000 19.55 0.00 39.21 3.84
4843 5356 2.752903 GCCGGTTTGTTCAGGTCAATAT 59.247 45.455 1.90 0.00 0.00 1.28
4862 5375 2.372264 ACATCATTGTCTGTGGATGCC 58.628 47.619 0.00 0.00 40.53 4.40
4879 5392 3.643792 GCTACCATCCTCCTTCACTACAT 59.356 47.826 0.00 0.00 0.00 2.29
4881 5394 3.031736 TGCTACCATCCTCCTTCACTAC 58.968 50.000 0.00 0.00 0.00 2.73
4937 5450 5.357257 GTGTTTACTTCACAGGACTTCTCA 58.643 41.667 0.00 0.00 36.05 3.27
4944 5457 1.139256 TGCGGTGTTTACTTCACAGGA 59.861 47.619 0.00 0.00 37.52 3.86
4972 5485 6.189859 ACCTCCATAGCATCTGAAAAATTCA 58.810 36.000 0.00 0.00 38.17 2.57
4973 5486 6.705863 ACCTCCATAGCATCTGAAAAATTC 57.294 37.500 0.00 0.00 0.00 2.17
4976 5489 6.599244 CAGTTACCTCCATAGCATCTGAAAAA 59.401 38.462 0.00 0.00 0.00 1.94
5004 5517 2.711009 TCTCCACAGGGTGATCTTGTTT 59.289 45.455 0.00 0.00 35.23 2.83
5079 5592 2.541762 GCTTAGACTTGTCCATCGCATC 59.458 50.000 0.00 0.00 0.00 3.91
5082 5595 2.301577 AGCTTAGACTTGTCCATCGC 57.698 50.000 0.00 0.00 0.00 4.58
5154 5667 2.564771 CTCAGAGTTGTTGGACTTGCA 58.435 47.619 0.00 0.00 0.00 4.08
5156 5669 2.874701 CACCTCAGAGTTGTTGGACTTG 59.125 50.000 0.00 0.00 0.00 3.16
5191 5704 6.499234 TCAATGTATTGTCATCACCACAAG 57.501 37.500 4.67 0.00 37.18 3.16
5286 5817 5.163814 GGAGCAATTCATGACAGTACAAGAC 60.164 44.000 0.00 0.00 0.00 3.01
5317 5848 8.079211 TGTAGTAGCAGTTGGAGAAGAATAAT 57.921 34.615 0.00 0.00 0.00 1.28
5318 5849 7.396339 TCTGTAGTAGCAGTTGGAGAAGAATAA 59.604 37.037 0.00 0.00 37.70 1.40
5319 5850 6.890268 TCTGTAGTAGCAGTTGGAGAAGAATA 59.110 38.462 0.00 0.00 37.70 1.75
5385 5919 2.038557 GGGTTCTTCTTCAGTAGTGGCA 59.961 50.000 0.00 0.00 0.00 4.92
5394 5928 2.575532 CTGCAACTGGGTTCTTCTTCA 58.424 47.619 0.00 0.00 0.00 3.02
5417 5951 2.978156 TGCTCCAATTGGGTTCTTCT 57.022 45.000 24.29 0.00 38.11 2.85
5418 5952 4.541973 ATTTGCTCCAATTGGGTTCTTC 57.458 40.909 24.29 7.87 38.11 2.87
5419 5953 4.222810 GGTATTTGCTCCAATTGGGTTCTT 59.777 41.667 24.29 8.08 38.11 2.52
5460 5994 5.818678 ATGATACCGGACATTAAAGGCTA 57.181 39.130 9.46 0.00 0.00 3.93
5464 5998 6.423905 CCTGTGTATGATACCGGACATTAAAG 59.576 42.308 9.46 7.98 0.00 1.85
5465 5999 6.098552 TCCTGTGTATGATACCGGACATTAAA 59.901 38.462 9.46 0.00 0.00 1.52
5517 6062 0.763223 AGTCAACCCCTCCGACAACT 60.763 55.000 0.00 0.00 31.92 3.16
5547 6092 1.977854 GTTCTGGGGCAAGGGAAAATT 59.022 47.619 0.00 0.00 0.00 1.82
5590 6136 8.441311 TTCATATAAGGTAGCATCCAAGAGAT 57.559 34.615 0.00 0.00 34.66 2.75
5703 6253 6.427242 CAGATGGAGTGATACTACGCTACTAA 59.573 42.308 0.00 0.00 29.34 2.24
5756 6312 2.014068 GCCAGCGAGGTTTTAGCAGAT 61.014 52.381 0.00 0.00 40.61 2.90
5757 6313 0.673644 GCCAGCGAGGTTTTAGCAGA 60.674 55.000 0.00 0.00 40.61 4.26
5758 6314 1.648467 GGCCAGCGAGGTTTTAGCAG 61.648 60.000 0.00 0.00 40.61 4.24
5759 6315 1.674322 GGCCAGCGAGGTTTTAGCA 60.674 57.895 0.00 0.00 40.61 3.49
5760 6316 2.407428 GGGCCAGCGAGGTTTTAGC 61.407 63.158 4.39 0.00 40.61 3.09
5761 6317 0.322546 AAGGGCCAGCGAGGTTTTAG 60.323 55.000 6.18 0.00 40.61 1.85
5788 6344 2.288518 GCAAATCCTGTAAAAACGCCCA 60.289 45.455 0.00 0.00 0.00 5.36
5827 6383 1.271217 GGGGATAATTACGGACCAGGC 60.271 57.143 0.00 0.00 0.00 4.85
5828 6384 2.302157 GAGGGGATAATTACGGACCAGG 59.698 54.545 0.00 0.00 0.00 4.45
5829 6385 3.006967 CAGAGGGGATAATTACGGACCAG 59.993 52.174 0.00 0.00 0.00 4.00
5832 6388 2.289506 GGCAGAGGGGATAATTACGGAC 60.290 54.545 0.00 0.00 0.00 4.79
5834 6390 1.337823 CGGCAGAGGGGATAATTACGG 60.338 57.143 0.00 0.00 0.00 4.02
5835 6391 1.939838 GCGGCAGAGGGGATAATTACG 60.940 57.143 0.00 0.00 0.00 3.18
5836 6392 1.348036 AGCGGCAGAGGGGATAATTAC 59.652 52.381 1.45 0.00 0.00 1.89
5837 6393 1.729586 AGCGGCAGAGGGGATAATTA 58.270 50.000 1.45 0.00 0.00 1.40
5842 6438 1.958288 AATATAGCGGCAGAGGGGAT 58.042 50.000 1.45 0.00 0.00 3.85
5851 6447 7.043325 CGAACTCTATCCAATAAATATAGCGGC 60.043 40.741 0.00 0.00 0.00 6.53
5865 6461 6.346096 CAAACCCTAAATCGAACTCTATCCA 58.654 40.000 0.00 0.00 0.00 3.41
5867 6463 5.815740 TGCAAACCCTAAATCGAACTCTATC 59.184 40.000 0.00 0.00 0.00 2.08
5871 6467 4.636206 AGATGCAAACCCTAAATCGAACTC 59.364 41.667 0.00 0.00 0.00 3.01
5874 6470 3.694072 CCAGATGCAAACCCTAAATCGAA 59.306 43.478 0.00 0.00 0.00 3.71
5876 6472 2.223572 GCCAGATGCAAACCCTAAATCG 60.224 50.000 0.00 0.00 40.77 3.34
5891 6487 0.259938 GGGTGGAGGAAATGCCAGAT 59.740 55.000 0.00 0.00 40.02 2.90
5961 6559 2.276058 GCGCGCACGAGAATCAAC 60.276 61.111 29.10 0.00 43.93 3.18
5993 6591 0.673985 CTTCGCCGGACATGGATCTA 59.326 55.000 5.05 0.00 0.00 1.98
6062 6668 2.906897 CTGGCCTTGGCGTTGTGT 60.907 61.111 3.32 0.00 0.00 3.72
6116 6722 1.583477 GTGCTCTTTGGCCTGCTTC 59.417 57.895 3.32 0.00 0.00 3.86
6383 7061 1.202031 GCATTACTTCGAAAGGCACGG 60.202 52.381 0.00 0.00 33.99 4.94
6416 7094 9.677567 GTGATTAGAGCAACAAACTTGAATTTA 57.322 29.630 0.00 0.00 0.00 1.40
6526 7222 2.646117 TTACACGTGGCGCAAGGACA 62.646 55.000 21.57 0.00 38.28 4.02
6566 7262 7.681939 TCAGCCTTAAAAATAGTCGTCAAAT 57.318 32.000 0.00 0.00 0.00 2.32
6574 7278 5.009010 CCGCATGATCAGCCTTAAAAATAGT 59.991 40.000 0.09 0.00 0.00 2.12
6575 7279 5.455392 CCGCATGATCAGCCTTAAAAATAG 58.545 41.667 0.09 0.00 0.00 1.73
6582 7286 0.533531 CAGCCGCATGATCAGCCTTA 60.534 55.000 0.09 0.00 0.00 2.69
6636 7340 3.299340 AAATATGCTACTAGGTCGGCG 57.701 47.619 0.00 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.