Multiple sequence alignment - TraesCS4B01G256200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G256200 chr4B 100.000 3458 0 0 1 3458 521575213 521571756 0.000000e+00 6386
1 TraesCS4B01G256200 chr7A 83.136 3125 486 22 350 3458 227046186 227043087 0.000000e+00 2813
2 TraesCS4B01G256200 chr7A 82.915 837 135 6 2623 3455 133025478 133026310 0.000000e+00 747
3 TraesCS4B01G256200 chr6D 79.415 2118 377 42 1357 3458 368286428 368284354 0.000000e+00 1441
4 TraesCS4B01G256200 chr6D 84.827 1127 156 9 238 1361 368296457 368295343 0.000000e+00 1120
5 TraesCS4B01G256200 chr6B 96.575 146 5 0 1 146 266948037 266947892 3.450000e-60 243
6 TraesCS4B01G256200 chr6B 96.575 146 5 0 1 146 353221251 353221106 3.450000e-60 243
7 TraesCS4B01G256200 chr5A 95.890 146 6 0 1 146 357928188 357928043 1.600000e-58 237
8 TraesCS4B01G256200 chr3D 95.890 146 6 0 1 146 356818083 356817938 1.600000e-58 237
9 TraesCS4B01G256200 chr2B 95.890 146 6 0 1 146 357079580 357079725 1.600000e-58 237
10 TraesCS4B01G256200 chr2A 95.918 147 5 1 1 146 749017592 749017738 1.600000e-58 237
11 TraesCS4B01G256200 chr5B 95.205 146 7 0 1 146 42405623 42405478 7.460000e-57 231
12 TraesCS4B01G256200 chr5B 95.205 146 7 0 1 146 476139070 476138925 7.460000e-57 231
13 TraesCS4B01G256200 chr1D 95.205 146 7 0 1 146 95803605 95803460 7.460000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G256200 chr4B 521571756 521575213 3457 True 6386 6386 100.000 1 3458 1 chr4B.!!$R1 3457
1 TraesCS4B01G256200 chr7A 227043087 227046186 3099 True 2813 2813 83.136 350 3458 1 chr7A.!!$R1 3108
2 TraesCS4B01G256200 chr7A 133025478 133026310 832 False 747 747 82.915 2623 3455 1 chr7A.!!$F1 832
3 TraesCS4B01G256200 chr6D 368284354 368286428 2074 True 1441 1441 79.415 1357 3458 1 chr6D.!!$R1 2101
4 TraesCS4B01G256200 chr6D 368295343 368296457 1114 True 1120 1120 84.827 238 1361 1 chr6D.!!$R2 1123

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.032678 ACGTCAGCAGTCAACAGAGG 59.967 55.0 0.00 0.0 0.0 3.69 F
207 208 0.096976 CCGCGAAATTGGTACTGCTG 59.903 55.0 8.23 0.0 0.0 4.41 F
2064 2067 0.107165 GCAGACATACCACCCTTCCC 60.107 60.0 0.00 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 1278 0.167470 CCTGAACACGCATGAGCTTG 59.833 55.0 0.00 0.00 44.80 4.01 R
2185 2188 0.043940 ACAGGAGAAGCCAGGATCCT 59.956 55.0 9.02 9.02 43.01 3.24 R
3005 3021 0.031585 TAGCTAATGTGCTACGGCCG 59.968 55.0 26.86 26.86 43.74 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.627499 TTCAACATTATCCAGAACAGTGC 57.373 39.130 0.00 0.00 0.00 4.40
28 29 4.650734 TCAACATTATCCAGAACAGTGCA 58.349 39.130 0.00 0.00 0.00 4.57
29 30 5.255687 TCAACATTATCCAGAACAGTGCAT 58.744 37.500 0.00 0.00 0.00 3.96
30 31 5.124297 TCAACATTATCCAGAACAGTGCATG 59.876 40.000 0.00 0.00 0.00 4.06
31 32 3.379372 ACATTATCCAGAACAGTGCATGC 59.621 43.478 11.82 11.82 0.00 4.06
32 33 3.354948 TTATCCAGAACAGTGCATGCT 57.645 42.857 20.33 0.00 0.00 3.79
33 34 1.460504 ATCCAGAACAGTGCATGCTG 58.539 50.000 20.33 12.41 41.92 4.41
34 35 0.397564 TCCAGAACAGTGCATGCTGA 59.602 50.000 20.33 0.00 39.62 4.26
35 36 0.520404 CCAGAACAGTGCATGCTGAC 59.480 55.000 20.33 9.80 39.62 3.51
36 37 0.165295 CAGAACAGTGCATGCTGACG 59.835 55.000 20.33 7.31 39.62 4.35
37 38 0.250038 AGAACAGTGCATGCTGACGT 60.250 50.000 20.33 7.98 39.62 4.34
38 39 0.164647 GAACAGTGCATGCTGACGTC 59.835 55.000 20.33 9.11 39.62 4.34
39 40 0.532640 AACAGTGCATGCTGACGTCA 60.533 50.000 18.88 18.88 39.62 4.35
40 41 0.321034 ACAGTGCATGCTGACGTCAT 60.321 50.000 20.40 0.53 39.62 3.06
41 42 0.372679 CAGTGCATGCTGACGTCATC 59.627 55.000 20.40 16.10 38.70 2.92
42 43 0.037046 AGTGCATGCTGACGTCATCA 60.037 50.000 22.94 22.94 35.45 3.07
43 44 1.012086 GTGCATGCTGACGTCATCAT 58.988 50.000 25.12 25.12 36.48 2.45
55 56 2.001812 GTCATCATGACGTCAGCAGT 57.998 50.000 24.41 3.69 37.67 4.40
56 57 1.923204 GTCATCATGACGTCAGCAGTC 59.077 52.381 24.41 8.75 37.67 3.51
61 62 3.272766 TGACGTCAGCAGTCAACAG 57.727 52.632 15.76 0.00 44.56 3.16
62 63 0.744281 TGACGTCAGCAGTCAACAGA 59.256 50.000 15.76 0.00 44.56 3.41
63 64 1.269257 TGACGTCAGCAGTCAACAGAG 60.269 52.381 15.76 0.00 44.56 3.35
64 65 0.032678 ACGTCAGCAGTCAACAGAGG 59.967 55.000 0.00 0.00 0.00 3.69
65 66 0.032678 CGTCAGCAGTCAACAGAGGT 59.967 55.000 0.00 0.00 0.00 3.85
66 67 1.506493 GTCAGCAGTCAACAGAGGTG 58.494 55.000 0.00 0.00 0.00 4.00
67 68 1.123077 TCAGCAGTCAACAGAGGTGT 58.877 50.000 0.00 0.00 39.19 4.16
76 77 1.213296 AACAGAGGTGTTGACTGGGT 58.787 50.000 0.00 0.00 45.58 4.51
77 78 0.759346 ACAGAGGTGTTGACTGGGTC 59.241 55.000 0.00 0.00 36.17 4.46
78 79 0.319900 CAGAGGTGTTGACTGGGTCG 60.320 60.000 0.00 0.00 34.95 4.79
79 80 1.668151 GAGGTGTTGACTGGGTCGC 60.668 63.158 0.00 0.00 34.95 5.19
80 81 2.100879 GAGGTGTTGACTGGGTCGCT 62.101 60.000 0.00 0.00 34.95 4.93
81 82 1.961277 GGTGTTGACTGGGTCGCTG 60.961 63.158 0.00 0.00 34.95 5.18
82 83 1.069090 GTGTTGACTGGGTCGCTGA 59.931 57.895 0.62 0.00 34.95 4.26
83 84 0.320771 GTGTTGACTGGGTCGCTGAT 60.321 55.000 0.62 0.00 34.95 2.90
84 85 0.320683 TGTTGACTGGGTCGCTGATG 60.321 55.000 0.62 0.00 34.95 3.07
85 86 0.320771 GTTGACTGGGTCGCTGATGT 60.321 55.000 0.62 0.00 34.95 3.06
86 87 0.320683 TTGACTGGGTCGCTGATGTG 60.321 55.000 0.62 0.00 34.95 3.21
87 88 1.293498 GACTGGGTCGCTGATGTGT 59.707 57.895 0.62 0.00 0.00 3.72
88 89 1.004560 ACTGGGTCGCTGATGTGTG 60.005 57.895 0.62 0.00 0.00 3.82
89 90 1.742880 CTGGGTCGCTGATGTGTGG 60.743 63.158 0.00 0.00 0.00 4.17
90 91 2.436646 GGGTCGCTGATGTGTGGG 60.437 66.667 0.00 0.00 0.00 4.61
91 92 2.347490 GGTCGCTGATGTGTGGGT 59.653 61.111 0.00 0.00 0.00 4.51
92 93 1.741770 GGTCGCTGATGTGTGGGTC 60.742 63.158 0.00 0.00 0.00 4.46
93 94 1.741770 GTCGCTGATGTGTGGGTCC 60.742 63.158 0.00 0.00 0.00 4.46
94 95 2.436646 CGCTGATGTGTGGGTCCC 60.437 66.667 0.00 0.00 0.00 4.46
95 96 2.756400 GCTGATGTGTGGGTCCCA 59.244 61.111 6.47 6.47 0.00 4.37
106 107 1.667595 TGGGTCCCACTGATCATTGA 58.332 50.000 14.23 0.00 0.00 2.57
107 108 1.281867 TGGGTCCCACTGATCATTGAC 59.718 52.381 14.23 9.43 0.00 3.18
108 109 1.561542 GGGTCCCACTGATCATTGACT 59.438 52.381 14.23 0.00 0.00 3.41
109 110 2.025887 GGGTCCCACTGATCATTGACTT 60.026 50.000 14.23 0.00 0.00 3.01
110 111 3.199946 GGGTCCCACTGATCATTGACTTA 59.800 47.826 14.23 0.00 0.00 2.24
111 112 4.446371 GGTCCCACTGATCATTGACTTAG 58.554 47.826 14.23 0.00 0.00 2.18
112 113 4.080863 GGTCCCACTGATCATTGACTTAGT 60.081 45.833 14.23 0.00 0.00 2.24
113 114 5.491982 GTCCCACTGATCATTGACTTAGTT 58.508 41.667 14.23 0.00 0.00 2.24
114 115 6.351881 GGTCCCACTGATCATTGACTTAGTTA 60.352 42.308 14.23 0.00 0.00 2.24
115 116 7.103641 GTCCCACTGATCATTGACTTAGTTAA 58.896 38.462 14.23 0.00 0.00 2.01
116 117 7.064728 GTCCCACTGATCATTGACTTAGTTAAC 59.935 40.741 14.23 0.00 0.00 2.01
117 118 7.038302 TCCCACTGATCATTGACTTAGTTAACT 60.038 37.037 14.23 13.68 0.00 2.24
118 119 8.258007 CCCACTGATCATTGACTTAGTTAACTA 58.742 37.037 14.23 11.38 0.00 2.24
119 120 9.653287 CCACTGATCATTGACTTAGTTAACTAA 57.347 33.333 23.31 23.31 36.99 2.24
157 158 8.703823 AATTTAATTAAAGTCGTCGTCAACAC 57.296 30.769 15.45 0.00 0.00 3.32
158 159 7.467557 TTTAATTAAAGTCGTCGTCAACACT 57.532 32.000 6.54 0.00 0.00 3.55
159 160 5.571778 AATTAAAGTCGTCGTCAACACTC 57.428 39.130 0.00 0.00 0.00 3.51
160 161 2.572191 AAAGTCGTCGTCAACACTCA 57.428 45.000 0.00 0.00 0.00 3.41
161 162 2.572191 AAGTCGTCGTCAACACTCAA 57.428 45.000 0.00 0.00 0.00 3.02
162 163 2.572191 AGTCGTCGTCAACACTCAAA 57.428 45.000 0.00 0.00 0.00 2.69
163 164 2.190981 AGTCGTCGTCAACACTCAAAC 58.809 47.619 0.00 0.00 0.00 2.93
164 165 1.921887 GTCGTCGTCAACACTCAAACA 59.078 47.619 0.00 0.00 0.00 2.83
165 166 2.034842 GTCGTCGTCAACACTCAAACAG 60.035 50.000 0.00 0.00 0.00 3.16
166 167 1.924524 CGTCGTCAACACTCAAACAGT 59.075 47.619 0.00 0.00 34.67 3.55
167 168 2.034842 CGTCGTCAACACTCAAACAGTC 60.035 50.000 0.00 0.00 30.26 3.51
168 169 2.034842 GTCGTCAACACTCAAACAGTCG 60.035 50.000 0.00 0.00 30.26 4.18
169 170 2.159352 TCGTCAACACTCAAACAGTCGA 60.159 45.455 0.00 0.00 30.26 4.20
170 171 2.034842 CGTCAACACTCAAACAGTCGAC 60.035 50.000 7.70 7.70 30.26 4.20
171 172 2.284417 GTCAACACTCAAACAGTCGACC 59.716 50.000 13.01 0.00 30.26 4.79
172 173 2.093921 TCAACACTCAAACAGTCGACCA 60.094 45.455 13.01 0.00 30.26 4.02
173 174 2.872245 CAACACTCAAACAGTCGACCAT 59.128 45.455 13.01 0.00 30.26 3.55
174 175 2.483876 ACACTCAAACAGTCGACCATG 58.516 47.619 13.01 7.66 30.26 3.66
175 176 2.102420 ACACTCAAACAGTCGACCATGA 59.898 45.455 13.01 10.54 30.26 3.07
176 177 2.476619 CACTCAAACAGTCGACCATGAC 59.523 50.000 13.01 0.00 39.21 3.06
177 178 2.102420 ACTCAAACAGTCGACCATGACA 59.898 45.455 13.01 0.00 41.41 3.58
178 179 2.476619 CTCAAACAGTCGACCATGACAC 59.523 50.000 13.01 0.00 41.41 3.67
179 180 2.159028 TCAAACAGTCGACCATGACACA 60.159 45.455 13.01 0.00 41.41 3.72
180 181 2.807967 CAAACAGTCGACCATGACACAT 59.192 45.455 13.01 0.00 41.41 3.21
181 182 2.839486 ACAGTCGACCATGACACATT 57.161 45.000 13.01 0.00 41.41 2.71
182 183 2.688507 ACAGTCGACCATGACACATTC 58.311 47.619 13.01 0.00 41.41 2.67
183 184 2.037121 ACAGTCGACCATGACACATTCA 59.963 45.455 13.01 0.00 41.41 2.57
184 185 3.264947 CAGTCGACCATGACACATTCAT 58.735 45.455 13.01 0.00 46.75 2.57
185 186 3.686241 CAGTCGACCATGACACATTCATT 59.314 43.478 13.01 0.00 42.87 2.57
186 187 3.935203 AGTCGACCATGACACATTCATTC 59.065 43.478 13.01 0.00 42.87 2.67
187 188 3.063997 GTCGACCATGACACATTCATTCC 59.936 47.826 3.51 0.00 42.87 3.01
188 189 2.355756 CGACCATGACACATTCATTCCC 59.644 50.000 0.00 0.00 42.87 3.97
189 190 2.689983 GACCATGACACATTCATTCCCC 59.310 50.000 0.00 0.00 42.87 4.81
190 191 1.677576 CCATGACACATTCATTCCCCG 59.322 52.381 0.00 0.00 42.87 5.73
191 192 1.066002 CATGACACATTCATTCCCCGC 59.934 52.381 0.00 0.00 42.87 6.13
192 193 1.024046 TGACACATTCATTCCCCGCG 61.024 55.000 0.00 0.00 0.00 6.46
193 194 0.742990 GACACATTCATTCCCCGCGA 60.743 55.000 8.23 0.00 0.00 5.87
194 195 0.322098 ACACATTCATTCCCCGCGAA 60.322 50.000 8.23 0.00 34.14 4.70
195 196 0.808125 CACATTCATTCCCCGCGAAA 59.192 50.000 8.23 0.00 33.08 3.46
196 197 1.405105 CACATTCATTCCCCGCGAAAT 59.595 47.619 8.23 1.01 33.08 2.17
197 198 2.099405 ACATTCATTCCCCGCGAAATT 58.901 42.857 8.23 0.00 33.08 1.82
198 199 2.159254 ACATTCATTCCCCGCGAAATTG 60.159 45.455 8.23 2.87 33.08 2.32
199 200 0.814457 TTCATTCCCCGCGAAATTGG 59.186 50.000 8.23 0.00 33.08 3.16
200 201 0.322997 TCATTCCCCGCGAAATTGGT 60.323 50.000 8.23 0.00 33.08 3.67
201 202 1.065345 TCATTCCCCGCGAAATTGGTA 60.065 47.619 8.23 0.00 33.08 3.25
202 203 1.064952 CATTCCCCGCGAAATTGGTAC 59.935 52.381 8.23 0.00 33.08 3.34
203 204 0.325602 TTCCCCGCGAAATTGGTACT 59.674 50.000 8.23 0.00 0.00 2.73
204 205 0.391927 TCCCCGCGAAATTGGTACTG 60.392 55.000 8.23 0.00 0.00 2.74
205 206 1.427819 CCCGCGAAATTGGTACTGC 59.572 57.895 8.23 0.00 0.00 4.40
206 207 1.024579 CCCGCGAAATTGGTACTGCT 61.025 55.000 8.23 0.00 0.00 4.24
207 208 0.096976 CCGCGAAATTGGTACTGCTG 59.903 55.000 8.23 0.00 0.00 4.41
208 209 0.096976 CGCGAAATTGGTACTGCTGG 59.903 55.000 0.00 0.00 0.00 4.85
209 210 0.179163 GCGAAATTGGTACTGCTGGC 60.179 55.000 0.00 0.00 0.00 4.85
210 211 0.451783 CGAAATTGGTACTGCTGGCC 59.548 55.000 0.00 0.00 0.00 5.36
211 212 1.839424 GAAATTGGTACTGCTGGCCT 58.161 50.000 3.32 0.00 0.00 5.19
212 213 2.679639 CGAAATTGGTACTGCTGGCCTA 60.680 50.000 3.32 0.00 0.00 3.93
213 214 2.717639 AATTGGTACTGCTGGCCTAG 57.282 50.000 3.32 2.14 0.00 3.02
250 251 4.978863 GCTGCCTAGCCGCCTAGC 62.979 72.222 0.00 0.00 44.33 3.42
322 324 2.930562 GGTGGCACTCTGGTCCCT 60.931 66.667 18.45 0.00 0.00 4.20
323 325 2.665603 GTGGCACTCTGGTCCCTC 59.334 66.667 11.13 0.00 0.00 4.30
325 327 3.403558 GGCACTCTGGTCCCTCCC 61.404 72.222 0.00 0.00 34.77 4.30
326 328 3.403558 GCACTCTGGTCCCTCCCC 61.404 72.222 0.00 0.00 34.77 4.81
343 345 4.825679 CCCTCCTCCCCCACCCTC 62.826 77.778 0.00 0.00 0.00 4.30
348 350 3.330720 CTCCCCCACCCTCGCTTT 61.331 66.667 0.00 0.00 0.00 3.51
361 363 2.746277 GCTTTCATGGCGTCGGGT 60.746 61.111 0.00 0.00 0.00 5.28
393 396 0.174617 CCTCCGTCTCCTCTGCTTTC 59.825 60.000 0.00 0.00 0.00 2.62
395 398 0.251832 TCCGTCTCCTCTGCTTTCCT 60.252 55.000 0.00 0.00 0.00 3.36
432 435 4.137615 TCGGGGATCGGCCTCTCA 62.138 66.667 0.00 0.00 39.77 3.27
461 464 2.048127 GTCGGCGCACTCCTCTTT 60.048 61.111 10.83 0.00 0.00 2.52
468 471 2.970639 CACTCCTCTTTCGCCGGA 59.029 61.111 5.05 0.00 0.00 5.14
548 551 2.752358 CAAGGTGCTCTGGAGGCA 59.248 61.111 0.00 0.00 37.36 4.75
619 622 0.170784 GTCCTCGTCTTCCTCCGAAC 59.829 60.000 0.00 0.00 31.92 3.95
621 624 1.303799 CCTCGTCTTCCTCCGAACGA 61.304 60.000 0.00 0.00 31.92 3.85
622 625 0.520404 CTCGTCTTCCTCCGAACGAA 59.480 55.000 0.00 0.00 29.35 3.85
650 653 1.302033 CGCCAGATCTGTATGGGCC 60.302 63.158 21.11 0.00 41.58 5.80
705 708 2.031163 GACTGCACCAACGAGCCT 59.969 61.111 0.00 0.00 0.00 4.58
706 709 2.281070 ACTGCACCAACGAGCCTG 60.281 61.111 0.00 0.00 0.00 4.85
717 720 2.894387 GAGCCTGTCTGCATCCGC 60.894 66.667 0.00 0.00 39.24 5.54
723 726 3.503363 GTCTGCATCCGCTGTGGC 61.503 66.667 1.39 0.00 39.64 5.01
732 735 4.379243 CGCTGTGGCTTCTCGGGT 62.379 66.667 0.00 0.00 36.09 5.28
747 750 1.604378 GGGTCATGTGTCCTCCCAG 59.396 63.158 0.00 0.00 38.15 4.45
779 782 2.579201 CAGACCAATCTCGGCGGT 59.421 61.111 7.21 0.00 30.42 5.68
821 824 0.534203 GACAGGGTTTCGAAGGCACA 60.534 55.000 0.00 0.00 0.00 4.57
831 834 0.803768 CGAAGGCACATCGGACTGAG 60.804 60.000 0.00 0.00 46.32 3.35
832 835 0.247736 GAAGGCACATCGGACTGAGT 59.752 55.000 0.00 0.00 0.00 3.41
834 837 0.900182 AGGCACATCGGACTGAGTCA 60.900 55.000 15.33 0.00 33.68 3.41
883 886 1.133325 GGAGTCTGATGGAGCCTAGGA 60.133 57.143 14.75 0.00 0.00 2.94
940 943 1.616628 GGTCTCCCTCCCACCATGT 60.617 63.158 0.00 0.00 0.00 3.21
988 991 0.829333 AGAGATCTGCATTCTGCCGT 59.171 50.000 0.00 0.00 44.23 5.68
989 992 0.935898 GAGATCTGCATTCTGCCGTG 59.064 55.000 0.00 0.00 44.23 4.94
994 997 1.579964 CTGCATTCTGCCGTGCTCAA 61.580 55.000 0.00 0.00 44.23 3.02
995 998 1.136147 GCATTCTGCCGTGCTCAAG 59.864 57.895 0.00 0.00 37.42 3.02
1005 1008 1.925888 GTGCTCAAGGGGGATGGAT 59.074 57.895 0.00 0.00 0.00 3.41
1053 1056 1.525995 GGTGATGTATGTGGGCGGG 60.526 63.158 0.00 0.00 0.00 6.13
1089 1092 1.451927 ATGTGTGGATGCGGCGATT 60.452 52.632 12.98 0.00 0.00 3.34
1124 1127 2.184020 CTCGACATCCCAAGGCACCA 62.184 60.000 0.00 0.00 0.00 4.17
1193 1196 2.970324 GCACGAGGTCCGCAACAA 60.970 61.111 0.00 0.00 43.32 2.83
1240 1243 2.021457 ACCAGGGTTTCAAGTTGTTCG 58.979 47.619 2.11 0.00 0.00 3.95
1248 1251 2.325583 TCAAGTTGTTCGTCAAGCCT 57.674 45.000 2.11 0.00 36.66 4.58
1254 1257 0.394938 TGTTCGTCAAGCCTTGGCTA 59.605 50.000 15.12 0.00 31.77 3.93
1287 1290 0.813184 CCAAATCCAAGCTCATGCGT 59.187 50.000 0.00 0.00 45.42 5.24
1433 1436 2.329267 TCTCTCCCTCTTCAAGTTGCA 58.671 47.619 0.00 0.00 0.00 4.08
1488 1491 2.560861 CGCATGTTGTGGGTTCCG 59.439 61.111 0.00 0.00 36.12 4.30
1515 1518 2.571216 CGAGACCGTGGTGAACCCT 61.571 63.158 0.00 0.00 34.29 4.34
1584 1587 4.735132 CACATCGGACGGGTGCGT 62.735 66.667 12.31 0.00 44.84 5.24
1587 1590 3.458163 ATCGGACGGGTGCGTGAT 61.458 61.111 12.31 0.00 44.84 3.06
1602 1605 1.134936 CGTGATCATACACCACCGGAA 60.135 52.381 9.46 0.00 37.48 4.30
1650 1653 1.228769 TGGTAGCGGACAGAGTGGT 60.229 57.895 0.00 0.00 0.00 4.16
1674 1677 2.680339 GCTTGACAGTTCTAATGGGAGC 59.320 50.000 0.00 0.00 0.00 4.70
1692 1695 1.745890 CGTTCAGGGTGAGTGGTCA 59.254 57.895 0.00 0.00 0.00 4.02
1698 1701 1.056700 AGGGTGAGTGGTCAGTGCTT 61.057 55.000 0.00 0.00 31.53 3.91
1710 1713 1.228894 AGTGCTTCCCTGGACTCGA 60.229 57.895 0.00 0.00 33.31 4.04
1719 1722 1.481056 CCTGGACTCGAGGGGTTTGT 61.481 60.000 18.41 0.00 0.00 2.83
1733 1736 3.140073 TTTGTGATGCCCGTGGGGT 62.140 57.895 7.14 0.00 46.51 4.95
1757 1760 2.127232 GAGCACGCCAAACTTCGC 60.127 61.111 0.00 0.00 0.00 4.70
1804 1807 1.327690 CCGGCAGGTGCTAGAAGGTA 61.328 60.000 1.26 0.00 41.70 3.08
1860 1863 3.991051 CCAGGTGTGACGGCGACT 61.991 66.667 16.62 0.00 0.00 4.18
1945 1948 0.991920 ATGGGTGGTTGAGAATCCGT 59.008 50.000 0.00 0.00 0.00 4.69
1952 1955 0.107654 GTTGAGAATCCGTGGGAGGG 60.108 60.000 0.00 0.00 34.05 4.30
1956 1959 0.326618 AGAATCCGTGGGAGGGTGAT 60.327 55.000 0.00 0.00 34.05 3.06
1957 1960 0.546598 GAATCCGTGGGAGGGTGATT 59.453 55.000 0.00 0.00 34.05 2.57
1983 1986 2.888863 GCTAGCGAGCTGGTCACT 59.111 61.111 12.01 5.14 45.98 3.41
1984 1987 1.226831 GCTAGCGAGCTGGTCACTC 60.227 63.158 12.01 0.00 45.98 3.51
1986 1989 1.669604 CTAGCGAGCTGGTCACTCTA 58.330 55.000 7.99 4.43 31.71 2.43
1989 1992 0.179150 GCGAGCTGGTCACTCTAGTG 60.179 60.000 7.70 3.64 46.91 2.74
2028 2031 4.218417 GCAGAGGATAGAGAGATTCCTGAC 59.782 50.000 0.00 0.00 39.98 3.51
2040 2043 0.878523 TTCCTGACAAAGTGGCGACG 60.879 55.000 0.00 0.00 0.00 5.12
2041 2044 1.300620 CCTGACAAAGTGGCGACGA 60.301 57.895 0.00 0.00 0.00 4.20
2042 2045 0.670546 CCTGACAAAGTGGCGACGAT 60.671 55.000 0.00 0.00 0.00 3.73
2043 2046 0.716108 CTGACAAAGTGGCGACGATC 59.284 55.000 0.00 0.00 0.00 3.69
2052 2055 1.227089 GGCGACGATCAGCAGACAT 60.227 57.895 0.00 0.00 34.54 3.06
2061 2064 1.656587 TCAGCAGACATACCACCCTT 58.343 50.000 0.00 0.00 0.00 3.95
2064 2067 0.107165 GCAGACATACCACCCTTCCC 60.107 60.000 0.00 0.00 0.00 3.97
2082 2085 2.764128 TCGGGGGTGGAGCAGATC 60.764 66.667 0.00 0.00 0.00 2.75
2109 2112 2.839486 TCGAAAACAGGCATGTCTCT 57.161 45.000 3.65 0.00 39.29 3.10
2115 2118 0.252421 ACAGGCATGTCTCTCTCCCA 60.252 55.000 0.00 0.00 32.99 4.37
2121 2124 1.206610 CATGTCTCTCTCCCACCTGTG 59.793 57.143 0.00 0.00 0.00 3.66
2132 2135 4.977810 ACCTGTGGTGGAGCTACT 57.022 55.556 0.00 0.00 32.98 2.57
2146 2149 1.587547 GCTACTACAGCCAATGGAGC 58.412 55.000 2.05 0.00 44.71 4.70
2151 2154 1.209019 CTACAGCCAATGGAGCAGTCT 59.791 52.381 2.05 0.00 31.45 3.24
2157 2160 0.325933 CAATGGAGCAGTCTGGGACA 59.674 55.000 1.14 0.00 34.60 4.02
2178 2181 1.784358 CTGGGATTGTGGCCAATGAT 58.216 50.000 7.24 0.76 41.37 2.45
2183 2186 2.696707 GGATTGTGGCCAATGATGATGT 59.303 45.455 7.24 0.00 41.37 3.06
2185 2188 2.510928 TGTGGCCAATGATGATGTGA 57.489 45.000 7.24 0.00 0.00 3.58
2188 2191 1.565288 TGGCCAATGATGATGTGAGGA 59.435 47.619 0.61 0.00 0.00 3.71
2189 2192 2.176148 TGGCCAATGATGATGTGAGGAT 59.824 45.455 0.61 0.00 0.00 3.24
2194 2197 4.072839 CAATGATGATGTGAGGATCCTGG 58.927 47.826 22.02 0.00 0.00 4.45
2211 2214 2.261671 GCTTCTCCTGTCGCGGAA 59.738 61.111 6.13 0.00 31.44 4.30
2258 2261 1.181741 ACAGCTTCTCCGCAGACAGA 61.182 55.000 0.00 0.00 0.00 3.41
2260 2263 0.246086 AGCTTCTCCGCAGACAGAAG 59.754 55.000 4.60 4.60 43.08 2.85
2261 2264 0.244994 GCTTCTCCGCAGACAGAAGA 59.755 55.000 11.94 0.00 42.95 2.87
2262 2265 1.134848 GCTTCTCCGCAGACAGAAGAT 60.135 52.381 11.94 0.00 42.95 2.40
2278 2281 5.669447 ACAGAAGATGATAGGGATCAGGTTT 59.331 40.000 0.00 0.00 45.29 3.27
2281 2284 4.570926 AGATGATAGGGATCAGGTTTCCA 58.429 43.478 0.00 0.00 45.29 3.53
2283 2286 3.736094 TGATAGGGATCAGGTTTCCACT 58.264 45.455 0.00 0.00 37.15 4.00
2298 2301 2.450502 ACTGTGGAGTTGGGCCCT 60.451 61.111 25.70 1.15 0.00 5.19
2299 2302 1.151899 ACTGTGGAGTTGGGCCCTA 60.152 57.895 25.70 14.07 0.00 3.53
2302 2305 1.227383 GTGGAGTTGGGCCCTATGG 59.773 63.158 25.70 0.00 0.00 2.74
2332 2342 3.330720 GTGAGGTGGTGGGGGAGG 61.331 72.222 0.00 0.00 0.00 4.30
2333 2343 3.869934 TGAGGTGGTGGGGGAGGT 61.870 66.667 0.00 0.00 0.00 3.85
2334 2344 2.531942 GAGGTGGTGGGGGAGGTT 60.532 66.667 0.00 0.00 0.00 3.50
2335 2345 2.858974 AGGTGGTGGGGGAGGTTG 60.859 66.667 0.00 0.00 0.00 3.77
2336 2346 4.678743 GGTGGTGGGGGAGGTTGC 62.679 72.222 0.00 0.00 0.00 4.17
2345 2355 3.443045 GGAGGTTGCGCATGTGGG 61.443 66.667 12.75 0.00 0.00 4.61
2350 2360 3.364441 TTGCGCATGTGGGTCAGC 61.364 61.111 12.75 0.00 0.00 4.26
2378 2388 4.882396 GCGCTTCCCGAGAGAGCC 62.882 72.222 0.00 0.00 40.02 4.70
2388 2398 3.966930 GAGAGAGCCGGGACCAGGT 62.967 68.421 12.66 0.00 0.00 4.00
2450 2460 0.246086 TTGTTGGCGCCCAATGATTC 59.754 50.000 26.77 6.60 45.80 2.52
2451 2461 0.611618 TGTTGGCGCCCAATGATTCT 60.612 50.000 26.77 0.00 45.80 2.40
2453 2463 0.611618 TTGGCGCCCAATGATTCTGT 60.612 50.000 26.77 0.00 38.75 3.41
2456 2466 1.378531 GCGCCCAATGATTCTGTGTA 58.621 50.000 0.00 0.00 0.00 2.90
2465 2475 4.558226 ATGATTCTGTGTAGCTGGTTGA 57.442 40.909 0.00 0.00 0.00 3.18
2466 2476 4.558226 TGATTCTGTGTAGCTGGTTGAT 57.442 40.909 0.00 0.00 0.00 2.57
2467 2477 4.910195 TGATTCTGTGTAGCTGGTTGATT 58.090 39.130 0.00 0.00 0.00 2.57
2471 2481 2.417933 CTGTGTAGCTGGTTGATTCTGC 59.582 50.000 0.00 0.00 0.00 4.26
2482 2492 0.836606 TGATTCTGCGGCCTTGGATA 59.163 50.000 0.00 0.00 0.00 2.59
2483 2493 1.421268 TGATTCTGCGGCCTTGGATAT 59.579 47.619 0.00 0.00 0.00 1.63
2488 2498 1.360192 GCGGCCTTGGATATTGTGC 59.640 57.895 0.00 0.00 0.00 4.57
2514 2524 3.953775 CCTGCAGTGGGACCGGTT 61.954 66.667 9.42 0.00 0.00 4.44
2538 2548 1.670295 GATATGACCACGTTGCATGCA 59.330 47.619 18.46 18.46 0.00 3.96
2539 2549 1.748950 TATGACCACGTTGCATGCAT 58.251 45.000 23.37 4.78 0.00 3.96
2561 2571 2.439156 GGTGCATGCAGAGGGACC 60.439 66.667 23.41 14.09 37.20 4.46
2563 2573 3.002583 TGCATGCAGAGGGACCGA 61.003 61.111 18.46 0.00 0.00 4.69
2564 2574 2.512515 GCATGCAGAGGGACCGAC 60.513 66.667 14.21 0.00 0.00 4.79
2583 2593 3.004002 CGACTGGTGATATGGCTACGTTA 59.996 47.826 0.00 0.00 0.00 3.18
2595 2605 5.738619 TGGCTACGTTACATGATATGGAT 57.261 39.130 0.00 0.00 33.60 3.41
2599 2609 5.163953 GCTACGTTACATGATATGGATGCAC 60.164 44.000 0.00 0.00 33.60 4.57
2601 2611 4.202357 ACGTTACATGATATGGATGCACCT 60.202 41.667 0.00 0.00 39.86 4.00
2604 2614 1.816835 CATGATATGGATGCACCTGCC 59.183 52.381 0.00 0.00 41.18 4.85
2605 2615 0.845337 TGATATGGATGCACCTGCCA 59.155 50.000 0.00 0.00 41.18 4.92
2620 2630 3.450115 CCAGGTCGGACCGGAGTC 61.450 72.222 25.98 0.00 44.90 3.36
2643 2659 2.951745 GAGACGCGCCTGTCATCG 60.952 66.667 16.22 0.00 41.41 3.84
2656 2672 3.554960 CCTGTCATCGAAGGAACAAGTGA 60.555 47.826 0.00 0.00 35.40 3.41
2661 2677 1.202486 TCGAAGGAACAAGTGACGCTT 60.202 47.619 0.00 0.00 38.08 4.68
2688 2704 0.036732 TTAAGTCCTGCTGTGCTGGG 59.963 55.000 13.94 5.89 45.66 4.45
2703 2719 3.989817 GTGCTGGGTTGCTTAAGAAATTG 59.010 43.478 6.67 0.00 0.00 2.32
2730 2746 5.077134 CCCCCTTGCTAAAAGAAATTGAG 57.923 43.478 0.00 0.00 0.00 3.02
2736 2752 6.462909 CCTTGCTAAAAGAAATTGAGGTGGTT 60.463 38.462 0.00 0.00 0.00 3.67
2784 2800 4.789075 ACGCCGCGTCGCAATACT 62.789 61.111 18.75 0.00 33.69 2.12
2799 2815 4.378874 CGCAATACTAGATCGATCAGCTCA 60.379 45.833 26.47 8.47 0.00 4.26
2800 2816 5.649557 GCAATACTAGATCGATCAGCTCAT 58.350 41.667 26.47 7.94 0.00 2.90
2847 2863 2.067766 GCTGAGACAGTTCTGCTCAAG 58.932 52.381 19.07 15.58 38.12 3.02
2881 2897 1.443407 CCCGATGAGTTGGCGATCT 59.557 57.895 0.00 0.00 0.00 2.75
2883 2899 0.103026 CCGATGAGTTGGCGATCTCA 59.897 55.000 11.30 11.30 43.38 3.27
2888 2904 1.107114 GAGTTGGCGATCTCAGAGGA 58.893 55.000 0.00 0.00 0.00 3.71
2895 2911 0.031857 CGATCTCAGAGGATGCGCTT 59.968 55.000 9.73 0.55 0.00 4.68
2904 2920 0.250901 AGGATGCGCTTGTCCAACTT 60.251 50.000 22.69 5.59 36.96 2.66
2946 2962 2.860735 CCTACAAGATAGACACTTGCGC 59.139 50.000 0.00 0.00 45.66 6.09
2952 2968 1.594862 GATAGACACTTGCGCACCATC 59.405 52.381 11.12 5.73 0.00 3.51
2974 2990 2.998667 CGATCTTCGGCAAGTCGC 59.001 61.111 0.00 0.00 36.00 5.19
3000 3016 0.836400 TGGACCTGGGAGTGGAGAAC 60.836 60.000 0.00 0.00 0.00 3.01
3054 3070 1.420138 AGGGTGGAGTTCACGACATTT 59.580 47.619 0.00 0.00 46.96 2.32
3070 3086 3.463533 CATTTTCCAATGTCGTGCGTA 57.536 42.857 0.00 0.00 35.86 4.42
3085 3101 2.812011 GTGCGTAAAGATGGAGTTGGTT 59.188 45.455 0.00 0.00 0.00 3.67
3109 3125 3.338249 CTGGAATGTTCGTGGTCTGAAT 58.662 45.455 0.00 0.00 0.00 2.57
3143 3159 4.081198 GGAGAAAGGCTTTGAGAGAGATGA 60.081 45.833 18.79 0.00 0.00 2.92
3145 3161 5.673514 AGAAAGGCTTTGAGAGAGATGATC 58.326 41.667 18.79 0.00 0.00 2.92
3184 3200 5.703978 CCATTTGGTGTGTACAAGAATCA 57.296 39.130 0.00 0.00 0.00 2.57
3264 3280 1.886542 CTTCTTTTACTTGCCGGCCTT 59.113 47.619 26.77 10.66 0.00 4.35
3301 3317 6.625267 AGGTATCATATTAGTGTGGGACTCT 58.375 40.000 0.00 0.00 35.96 3.24
3335 3351 9.610705 TTAGTATATCTAACTGTGTTCGAGACT 57.389 33.333 0.00 0.00 34.17 3.24
3355 3371 4.171754 ACTCTAACTTCATTTCGGCGTAC 58.828 43.478 6.85 0.00 0.00 3.67
3421 3437 1.622811 GAGCCATAGGAGGACCATGAG 59.377 57.143 0.00 0.00 38.94 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.243426 GCACTGTTCTGGATAATGTTGAATTAA 58.757 33.333 0.00 0.00 0.00 1.40
2 3 7.392953 TGCACTGTTCTGGATAATGTTGAATTA 59.607 33.333 0.00 0.00 0.00 1.40
3 4 6.209192 TGCACTGTTCTGGATAATGTTGAATT 59.791 34.615 0.00 0.00 0.00 2.17
4 5 5.711506 TGCACTGTTCTGGATAATGTTGAAT 59.288 36.000 0.00 0.00 0.00 2.57
5 6 5.069318 TGCACTGTTCTGGATAATGTTGAA 58.931 37.500 0.00 0.00 0.00 2.69
6 7 4.650734 TGCACTGTTCTGGATAATGTTGA 58.349 39.130 0.00 0.00 0.00 3.18
7 8 5.337554 CATGCACTGTTCTGGATAATGTTG 58.662 41.667 0.00 0.00 0.00 3.33
8 9 4.142315 GCATGCACTGTTCTGGATAATGTT 60.142 41.667 14.21 0.00 0.00 2.71
9 10 3.379372 GCATGCACTGTTCTGGATAATGT 59.621 43.478 14.21 0.00 0.00 2.71
10 11 3.630769 AGCATGCACTGTTCTGGATAATG 59.369 43.478 21.98 0.00 0.00 1.90
11 12 3.630769 CAGCATGCACTGTTCTGGATAAT 59.369 43.478 21.98 0.00 32.78 1.28
12 13 3.011818 CAGCATGCACTGTTCTGGATAA 58.988 45.455 21.98 0.00 32.78 1.75
13 14 2.236893 TCAGCATGCACTGTTCTGGATA 59.763 45.455 21.98 0.00 38.84 2.59
14 15 1.003928 TCAGCATGCACTGTTCTGGAT 59.996 47.619 21.98 0.00 38.84 3.41
15 16 0.397564 TCAGCATGCACTGTTCTGGA 59.602 50.000 21.98 0.00 38.84 3.86
16 17 0.520404 GTCAGCATGCACTGTTCTGG 59.480 55.000 21.98 0.00 38.84 3.86
17 18 0.165295 CGTCAGCATGCACTGTTCTG 59.835 55.000 21.98 7.52 38.84 3.02
18 19 0.250038 ACGTCAGCATGCACTGTTCT 60.250 50.000 21.98 0.00 38.84 3.01
19 20 0.164647 GACGTCAGCATGCACTGTTC 59.835 55.000 21.98 6.67 38.84 3.18
20 21 0.532640 TGACGTCAGCATGCACTGTT 60.533 50.000 21.98 0.00 38.84 3.16
21 22 0.321034 ATGACGTCAGCATGCACTGT 60.321 50.000 24.41 12.42 38.84 3.55
22 23 0.372679 GATGACGTCAGCATGCACTG 59.627 55.000 27.75 10.75 39.12 3.66
23 24 0.037046 TGATGACGTCAGCATGCACT 60.037 50.000 31.04 8.16 37.34 4.40
24 25 2.459245 TGATGACGTCAGCATGCAC 58.541 52.632 31.04 9.42 37.34 4.57
36 37 1.923204 GACTGCTGACGTCATGATGAC 59.077 52.381 20.40 15.36 43.65 3.06
37 38 1.545582 TGACTGCTGACGTCATGATGA 59.454 47.619 20.40 0.00 36.54 2.92
38 39 2.000429 TGACTGCTGACGTCATGATG 58.000 50.000 20.40 13.53 36.54 3.07
39 40 2.289010 TGTTGACTGCTGACGTCATGAT 60.289 45.455 20.40 5.03 40.70 2.45
40 41 1.068434 TGTTGACTGCTGACGTCATGA 59.932 47.619 20.40 7.60 40.70 3.07
41 42 1.458445 CTGTTGACTGCTGACGTCATG 59.542 52.381 20.40 14.04 40.70 3.07
42 43 1.341209 TCTGTTGACTGCTGACGTCAT 59.659 47.619 20.40 3.41 40.70 3.06
43 44 0.744281 TCTGTTGACTGCTGACGTCA 59.256 50.000 18.88 18.88 39.45 4.35
44 45 1.413382 CTCTGTTGACTGCTGACGTC 58.587 55.000 9.11 9.11 0.00 4.34
45 46 0.032678 CCTCTGTTGACTGCTGACGT 59.967 55.000 0.00 0.00 0.00 4.34
46 47 0.032678 ACCTCTGTTGACTGCTGACG 59.967 55.000 0.00 0.00 0.00 4.35
47 48 1.202580 ACACCTCTGTTGACTGCTGAC 60.203 52.381 0.00 0.00 0.00 3.51
48 49 1.123077 ACACCTCTGTTGACTGCTGA 58.877 50.000 0.00 0.00 0.00 4.26
49 50 1.959042 AACACCTCTGTTGACTGCTG 58.041 50.000 0.00 0.00 39.28 4.41
57 58 1.141053 GACCCAGTCAACACCTCTGTT 59.859 52.381 0.00 0.00 41.61 3.16
58 59 0.759346 GACCCAGTCAACACCTCTGT 59.241 55.000 0.00 0.00 32.09 3.41
59 60 0.319900 CGACCCAGTCAACACCTCTG 60.320 60.000 0.00 0.00 32.09 3.35
60 61 2.050269 CGACCCAGTCAACACCTCT 58.950 57.895 0.00 0.00 32.09 3.69
61 62 1.668151 GCGACCCAGTCAACACCTC 60.668 63.158 0.00 0.00 32.09 3.85
62 63 2.140792 AGCGACCCAGTCAACACCT 61.141 57.895 0.00 0.00 32.09 4.00
63 64 1.961277 CAGCGACCCAGTCAACACC 60.961 63.158 0.00 0.00 32.09 4.16
64 65 0.320771 ATCAGCGACCCAGTCAACAC 60.321 55.000 0.00 0.00 32.09 3.32
65 66 0.320683 CATCAGCGACCCAGTCAACA 60.321 55.000 0.00 0.00 32.09 3.33
66 67 0.320771 ACATCAGCGACCCAGTCAAC 60.321 55.000 0.00 0.00 32.09 3.18
67 68 0.320683 CACATCAGCGACCCAGTCAA 60.321 55.000 0.00 0.00 32.09 3.18
68 69 1.293179 CACATCAGCGACCCAGTCA 59.707 57.895 0.00 0.00 32.09 3.41
69 70 1.016130 CACACATCAGCGACCCAGTC 61.016 60.000 0.00 0.00 0.00 3.51
70 71 1.004560 CACACATCAGCGACCCAGT 60.005 57.895 0.00 0.00 0.00 4.00
71 72 1.742880 CCACACATCAGCGACCCAG 60.743 63.158 0.00 0.00 0.00 4.45
72 73 2.347114 CCACACATCAGCGACCCA 59.653 61.111 0.00 0.00 0.00 4.51
73 74 2.436646 CCCACACATCAGCGACCC 60.437 66.667 0.00 0.00 0.00 4.46
74 75 1.741770 GACCCACACATCAGCGACC 60.742 63.158 0.00 0.00 0.00 4.79
75 76 1.741770 GGACCCACACATCAGCGAC 60.742 63.158 0.00 0.00 0.00 5.19
76 77 2.662596 GGACCCACACATCAGCGA 59.337 61.111 0.00 0.00 0.00 4.93
77 78 2.436646 GGGACCCACACATCAGCG 60.437 66.667 5.33 0.00 0.00 5.18
78 79 2.756400 TGGGACCCACACATCAGC 59.244 61.111 9.95 0.00 0.00 4.26
87 88 1.281867 GTCAATGATCAGTGGGACCCA 59.718 52.381 21.96 9.95 0.00 4.51
88 89 1.561542 AGTCAATGATCAGTGGGACCC 59.438 52.381 21.96 2.45 0.00 4.46
89 90 3.356529 AAGTCAATGATCAGTGGGACC 57.643 47.619 21.96 8.69 0.00 4.46
90 91 5.091261 ACTAAGTCAATGATCAGTGGGAC 57.909 43.478 21.96 14.00 0.00 4.46
91 92 5.762179 AACTAAGTCAATGATCAGTGGGA 57.238 39.130 21.96 1.78 0.00 4.37
92 93 7.106239 AGTTAACTAAGTCAATGATCAGTGGG 58.894 38.462 21.96 10.30 0.00 4.61
93 94 9.653287 TTAGTTAACTAAGTCAATGATCAGTGG 57.347 33.333 21.52 8.81 33.83 4.00
131 132 9.796062 GTGTTGACGACGACTTTAATTAAATTA 57.204 29.630 10.97 0.00 0.00 1.40
132 133 8.553696 AGTGTTGACGACGACTTTAATTAAATT 58.446 29.630 10.97 5.83 0.00 1.82
133 134 8.080083 AGTGTTGACGACGACTTTAATTAAAT 57.920 30.769 10.97 2.48 0.00 1.40
134 135 7.222417 TGAGTGTTGACGACGACTTTAATTAAA 59.778 33.333 10.16 10.16 0.00 1.52
135 136 6.696583 TGAGTGTTGACGACGACTTTAATTAA 59.303 34.615 0.00 0.00 0.00 1.40
136 137 6.207928 TGAGTGTTGACGACGACTTTAATTA 58.792 36.000 0.00 0.00 0.00 1.40
137 138 5.045215 TGAGTGTTGACGACGACTTTAATT 58.955 37.500 0.00 0.00 0.00 1.40
138 139 4.613944 TGAGTGTTGACGACGACTTTAAT 58.386 39.130 0.00 0.00 0.00 1.40
139 140 4.031418 TGAGTGTTGACGACGACTTTAA 57.969 40.909 0.00 0.00 0.00 1.52
140 141 3.696281 TGAGTGTTGACGACGACTTTA 57.304 42.857 0.00 0.00 0.00 1.85
141 142 2.572191 TGAGTGTTGACGACGACTTT 57.428 45.000 0.00 0.00 0.00 2.66
142 143 2.572191 TTGAGTGTTGACGACGACTT 57.428 45.000 0.00 0.00 0.00 3.01
143 144 2.190981 GTTTGAGTGTTGACGACGACT 58.809 47.619 0.00 0.00 0.00 4.18
144 145 1.921887 TGTTTGAGTGTTGACGACGAC 59.078 47.619 0.00 0.00 0.00 4.34
145 146 2.190161 CTGTTTGAGTGTTGACGACGA 58.810 47.619 0.00 0.00 0.00 4.20
146 147 1.924524 ACTGTTTGAGTGTTGACGACG 59.075 47.619 0.00 0.00 31.75 5.12
147 148 2.034842 CGACTGTTTGAGTGTTGACGAC 60.035 50.000 0.00 0.00 33.83 4.34
148 149 2.159352 TCGACTGTTTGAGTGTTGACGA 60.159 45.455 0.00 0.00 33.83 4.20
149 150 2.034842 GTCGACTGTTTGAGTGTTGACG 60.035 50.000 8.70 0.00 36.01 4.35
150 151 2.284417 GGTCGACTGTTTGAGTGTTGAC 59.716 50.000 16.46 0.00 41.74 3.18
151 152 2.093921 TGGTCGACTGTTTGAGTGTTGA 60.094 45.455 16.46 0.00 33.83 3.18
152 153 2.276201 TGGTCGACTGTTTGAGTGTTG 58.724 47.619 16.46 0.00 33.83 3.33
153 154 2.684001 TGGTCGACTGTTTGAGTGTT 57.316 45.000 16.46 0.00 33.83 3.32
154 155 2.102420 TCATGGTCGACTGTTTGAGTGT 59.898 45.455 16.46 0.00 33.83 3.55
155 156 2.476619 GTCATGGTCGACTGTTTGAGTG 59.523 50.000 16.46 3.57 33.83 3.51
156 157 2.102420 TGTCATGGTCGACTGTTTGAGT 59.898 45.455 16.46 0.00 36.82 3.41
157 158 2.476619 GTGTCATGGTCGACTGTTTGAG 59.523 50.000 16.46 0.00 36.82 3.02
158 159 2.159028 TGTGTCATGGTCGACTGTTTGA 60.159 45.455 16.46 10.33 36.82 2.69
159 160 2.209273 TGTGTCATGGTCGACTGTTTG 58.791 47.619 16.46 8.19 36.82 2.93
160 161 2.613026 TGTGTCATGGTCGACTGTTT 57.387 45.000 16.46 0.00 36.82 2.83
161 162 2.839486 ATGTGTCATGGTCGACTGTT 57.161 45.000 16.46 0.00 36.82 3.16
162 163 2.037121 TGAATGTGTCATGGTCGACTGT 59.963 45.455 16.46 1.11 36.82 3.55
163 164 2.687370 TGAATGTGTCATGGTCGACTG 58.313 47.619 16.46 7.01 36.82 3.51
164 165 3.616956 ATGAATGTGTCATGGTCGACT 57.383 42.857 16.46 0.00 45.69 4.18
165 166 3.063997 GGAATGAATGTGTCATGGTCGAC 59.936 47.826 7.13 7.13 46.80 4.20
166 167 3.270027 GGAATGAATGTGTCATGGTCGA 58.730 45.455 0.00 0.00 46.80 4.20
167 168 2.355756 GGGAATGAATGTGTCATGGTCG 59.644 50.000 0.00 0.00 46.80 4.79
168 169 2.689983 GGGGAATGAATGTGTCATGGTC 59.310 50.000 0.00 0.00 46.80 4.02
169 170 2.738743 GGGGAATGAATGTGTCATGGT 58.261 47.619 0.00 0.00 46.80 3.55
170 171 1.677576 CGGGGAATGAATGTGTCATGG 59.322 52.381 0.00 0.00 46.80 3.66
171 172 1.066002 GCGGGGAATGAATGTGTCATG 59.934 52.381 0.00 0.00 46.80 3.07
173 174 1.024046 CGCGGGGAATGAATGTGTCA 61.024 55.000 0.00 0.00 41.67 3.58
174 175 0.742990 TCGCGGGGAATGAATGTGTC 60.743 55.000 6.13 0.00 0.00 3.67
175 176 0.322098 TTCGCGGGGAATGAATGTGT 60.322 50.000 6.13 0.00 0.00 3.72
176 177 0.808125 TTTCGCGGGGAATGAATGTG 59.192 50.000 6.13 0.00 33.85 3.21
177 178 1.762708 ATTTCGCGGGGAATGAATGT 58.237 45.000 6.13 0.00 33.85 2.71
178 179 2.462889 CAATTTCGCGGGGAATGAATG 58.537 47.619 6.78 0.00 33.85 2.67
179 180 1.408702 CCAATTTCGCGGGGAATGAAT 59.591 47.619 6.78 0.00 33.85 2.57
180 181 0.814457 CCAATTTCGCGGGGAATGAA 59.186 50.000 6.78 0.00 33.85 2.57
181 182 0.322997 ACCAATTTCGCGGGGAATGA 60.323 50.000 6.78 0.00 33.85 2.57
182 183 1.064952 GTACCAATTTCGCGGGGAATG 59.935 52.381 6.78 5.03 33.85 2.67
183 184 1.064979 AGTACCAATTTCGCGGGGAAT 60.065 47.619 6.13 0.00 33.85 3.01
184 185 0.325602 AGTACCAATTTCGCGGGGAA 59.674 50.000 6.13 3.07 0.00 3.97
185 186 0.391927 CAGTACCAATTTCGCGGGGA 60.392 55.000 6.13 0.00 0.00 4.81
186 187 1.988834 GCAGTACCAATTTCGCGGGG 61.989 60.000 6.13 3.06 0.00 5.73
187 188 1.024579 AGCAGTACCAATTTCGCGGG 61.025 55.000 6.13 0.43 0.00 6.13
188 189 0.096976 CAGCAGTACCAATTTCGCGG 59.903 55.000 6.13 0.00 0.00 6.46
189 190 0.096976 CCAGCAGTACCAATTTCGCG 59.903 55.000 0.00 0.00 0.00 5.87
190 191 0.179163 GCCAGCAGTACCAATTTCGC 60.179 55.000 0.00 0.00 0.00 4.70
191 192 0.451783 GGCCAGCAGTACCAATTTCG 59.548 55.000 0.00 0.00 0.00 3.46
192 193 1.839424 AGGCCAGCAGTACCAATTTC 58.161 50.000 5.01 0.00 0.00 2.17
193 194 3.004752 CTAGGCCAGCAGTACCAATTT 57.995 47.619 5.01 0.00 0.00 1.82
194 195 2.717639 CTAGGCCAGCAGTACCAATT 57.282 50.000 5.01 0.00 0.00 2.32
309 311 3.403558 GGGGAGGGACCAGAGTGC 61.404 72.222 0.00 0.00 41.20 4.40
326 328 4.825679 GAGGGTGGGGGAGGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
337 339 3.190878 GCCATGAAAGCGAGGGTG 58.809 61.111 0.00 0.00 0.00 4.61
344 346 2.253414 GAACCCGACGCCATGAAAGC 62.253 60.000 0.00 0.00 0.00 3.51
346 348 0.672401 GAGAACCCGACGCCATGAAA 60.672 55.000 0.00 0.00 0.00 2.69
347 349 1.079405 GAGAACCCGACGCCATGAA 60.079 57.895 0.00 0.00 0.00 2.57
348 350 2.577059 GAGAACCCGACGCCATGA 59.423 61.111 0.00 0.00 0.00 3.07
393 396 3.441290 ACCGGTCTCTCGCGAAGG 61.441 66.667 11.33 9.36 0.00 3.46
395 398 3.744719 CCACCGGTCTCTCGCGAA 61.745 66.667 11.33 0.02 0.00 4.70
536 539 2.895680 GACGATGCCTCCAGAGCA 59.104 61.111 0.00 0.00 45.94 4.26
585 588 4.430765 GACGCCCGGCTTCGAAGA 62.431 66.667 28.95 0.00 35.61 2.87
619 622 2.125147 TGGCGGAATCAGGCTTCG 60.125 61.111 8.48 0.00 35.01 3.79
621 624 0.179034 GATCTGGCGGAATCAGGCTT 60.179 55.000 8.48 0.00 33.36 4.35
622 625 1.053264 AGATCTGGCGGAATCAGGCT 61.053 55.000 8.48 0.00 33.36 4.58
650 653 1.580845 CTGGAAGCACCGAAAGCAGG 61.581 60.000 0.00 0.00 42.61 4.85
685 688 2.029844 GCTCGTTGGTGCAGTCCTC 61.030 63.158 0.00 0.00 33.00 3.71
705 708 2.046988 CCACAGCGGATGCAGACA 60.047 61.111 0.00 0.00 46.23 3.41
706 709 3.503363 GCCACAGCGGATGCAGAC 61.503 66.667 0.00 0.00 46.23 3.51
717 720 0.742281 CATGACCCGAGAAGCCACAG 60.742 60.000 0.00 0.00 0.00 3.66
723 726 0.898320 AGGACACATGACCCGAGAAG 59.102 55.000 0.00 0.00 0.00 2.85
732 735 1.126948 TGCACTGGGAGGACACATGA 61.127 55.000 0.00 0.00 0.00 3.07
765 768 3.000819 TCCACCGCCGAGATTGGT 61.001 61.111 0.00 0.00 36.10 3.67
821 824 1.893786 GGCACTGACTCAGTCCGAT 59.106 57.895 8.85 0.00 43.43 4.18
831 834 4.030452 GCAAGCACCGGCACTGAC 62.030 66.667 0.00 0.00 44.61 3.51
853 856 0.419459 ATCAGACTCCTCCCCACCTT 59.581 55.000 0.00 0.00 0.00 3.50
867 870 1.575788 TCCTTCCTAGGCTCCATCAGA 59.424 52.381 2.96 0.00 41.69 3.27
940 943 2.759973 CTAGGGCAGGCCGACAGA 60.760 66.667 7.51 0.00 36.85 3.41
955 958 0.820226 ATCTCTGCACTCGCTTGCTA 59.180 50.000 9.16 0.00 43.41 3.49
988 991 0.624206 TCATCCATCCCCCTTGAGCA 60.624 55.000 0.00 0.00 0.00 4.26
989 992 0.776176 ATCATCCATCCCCCTTGAGC 59.224 55.000 0.00 0.00 0.00 4.26
994 997 0.574818 TCCAGATCATCCATCCCCCT 59.425 55.000 0.00 0.00 30.71 4.79
995 998 0.990374 CTCCAGATCATCCATCCCCC 59.010 60.000 0.00 0.00 30.71 5.40
1029 1032 0.392327 CCACATACATCACCACCGCA 60.392 55.000 0.00 0.00 0.00 5.69
1061 1064 1.556451 CATCCACACATGAGACCCTCA 59.444 52.381 0.00 0.00 44.99 3.86
1063 1066 0.254178 GCATCCACACATGAGACCCT 59.746 55.000 0.00 0.00 0.00 4.34
1089 1092 1.066215 TCGAGCTGCTTAGAAATGGCA 60.066 47.619 2.53 0.00 34.66 4.92
1099 1102 0.392193 CTTGGGATGTCGAGCTGCTT 60.392 55.000 2.53 0.00 0.00 3.91
1124 1127 3.807071 GTGGAATTTGTGCACCGAAAAAT 59.193 39.130 15.69 10.57 42.50 1.82
1164 1167 0.304705 CCTCGTGCGATGCAAATACC 59.695 55.000 0.00 0.00 41.47 2.73
1167 1170 1.369091 GGACCTCGTGCGATGCAAAT 61.369 55.000 0.00 0.00 41.47 2.32
1215 1218 0.535102 ACTTGAAACCCTGGTGCTCG 60.535 55.000 0.00 0.00 0.00 5.03
1248 1251 4.998400 TGCGCTTGCCGTAGCCAA 62.998 61.111 9.73 0.00 37.90 4.52
1275 1278 0.167470 CCTGAACACGCATGAGCTTG 59.833 55.000 0.00 0.00 44.80 4.01
1287 1290 4.225717 TCAATCATCAGATCCACCTGAACA 59.774 41.667 0.00 0.00 45.22 3.18
1444 1447 1.033574 GGAACCTCATCCGAGTCGAT 58.966 55.000 15.64 2.77 37.59 3.59
1450 1453 1.667154 CGAGCAGGAACCTCATCCGA 61.667 60.000 0.00 0.00 44.60 4.55
1474 1477 1.303317 GCTCCGGAACCCACAACAT 60.303 57.895 5.23 0.00 0.00 2.71
1477 1480 4.323477 CGGCTCCGGAACCCACAA 62.323 66.667 18.31 0.00 35.56 3.33
1523 1526 1.267121 CTGACGGAAAGAGGGGAGAA 58.733 55.000 0.00 0.00 0.00 2.87
1526 1529 0.685097 CAACTGACGGAAAGAGGGGA 59.315 55.000 0.00 0.00 0.00 4.81
1533 1536 0.468226 ACTCCAGCAACTGACGGAAA 59.532 50.000 0.00 0.00 32.44 3.13
1584 1587 1.134936 CGTTCCGGTGGTGTATGATCA 60.135 52.381 0.00 0.00 0.00 2.92
1587 1590 1.079681 GCGTTCCGGTGGTGTATGA 60.080 57.895 0.00 0.00 0.00 2.15
1620 1623 1.068250 GCTACCACCATCCGAGCTC 59.932 63.158 2.73 2.73 0.00 4.09
1655 1658 2.301870 ACGCTCCCATTAGAACTGTCAA 59.698 45.455 0.00 0.00 0.00 3.18
1671 1674 1.374758 CCACTCACCCTGAACGCTC 60.375 63.158 0.00 0.00 0.00 5.03
1674 1677 0.319900 CTGACCACTCACCCTGAACG 60.320 60.000 0.00 0.00 0.00 3.95
1692 1695 1.228894 TCGAGTCCAGGGAAGCACT 60.229 57.895 0.00 0.00 0.00 4.40
1710 1713 2.035626 CGGGCATCACAAACCCCT 59.964 61.111 0.00 0.00 40.86 4.79
1740 1743 2.127232 GCGAAGTTTGGCGTGCTC 60.127 61.111 0.00 0.00 0.00 4.26
1818 1821 2.150051 GGGCGGGATCCTCCAATCT 61.150 63.158 20.26 0.00 38.64 2.40
1821 1824 2.368192 ATGGGCGGGATCCTCCAA 60.368 61.111 20.19 12.80 38.64 3.53
1886 1889 0.904865 CAGGGTAGACTGCCTGTGGA 60.905 60.000 9.65 0.00 0.00 4.02
1891 1894 1.992277 CAGCCAGGGTAGACTGCCT 60.992 63.158 9.65 0.00 37.16 4.75
1911 1914 1.732683 CCATTGGTTTGAACGCGCC 60.733 57.895 5.73 0.00 0.00 6.53
1935 1938 1.080354 ACCCTCCCACGGATTCTCA 59.920 57.895 0.00 0.00 0.00 3.27
1941 1944 1.682849 CAAATCACCCTCCCACGGA 59.317 57.895 0.00 0.00 0.00 4.69
1945 1948 0.404040 GTCACCAAATCACCCTCCCA 59.596 55.000 0.00 0.00 0.00 4.37
1952 1955 1.394917 CGCTAGCTGTCACCAAATCAC 59.605 52.381 13.93 0.00 0.00 3.06
1956 1959 0.670546 GCTCGCTAGCTGTCACCAAA 60.671 55.000 13.93 0.00 45.85 3.28
1957 1960 1.079819 GCTCGCTAGCTGTCACCAA 60.080 57.895 13.93 0.00 45.85 3.67
1983 1986 1.550327 CCCTGTCACTCTGCACTAGA 58.450 55.000 0.00 0.00 0.00 2.43
1984 1987 0.534412 CCCCTGTCACTCTGCACTAG 59.466 60.000 0.00 0.00 0.00 2.57
1986 1989 2.888447 GCCCCTGTCACTCTGCACT 61.888 63.158 0.00 0.00 0.00 4.40
1995 1998 2.871795 TATCCTCTGCGCCCCTGTCA 62.872 60.000 4.18 0.00 0.00 3.58
2028 2031 1.291184 TGCTGATCGTCGCCACTTTG 61.291 55.000 0.00 0.00 0.00 2.77
2040 2043 1.765314 AGGGTGGTATGTCTGCTGATC 59.235 52.381 0.00 0.00 0.00 2.92
2041 2044 1.885049 AGGGTGGTATGTCTGCTGAT 58.115 50.000 0.00 0.00 0.00 2.90
2042 2045 1.555075 GAAGGGTGGTATGTCTGCTGA 59.445 52.381 0.00 0.00 0.00 4.26
2043 2046 1.407437 GGAAGGGTGGTATGTCTGCTG 60.407 57.143 0.00 0.00 0.00 4.41
2052 2055 2.039951 CCCGAGGGAAGGGTGGTA 59.960 66.667 0.84 0.00 43.89 3.25
2064 2067 2.765807 ATCTGCTCCACCCCCGAG 60.766 66.667 0.00 0.00 0.00 4.63
2082 2085 0.109132 GCCTGTTTTCGATTGGCAGG 60.109 55.000 16.55 16.55 46.82 4.85
2094 2097 1.280421 GGGAGAGAGACATGCCTGTTT 59.720 52.381 0.00 0.00 35.14 2.83
2096 2099 0.252421 TGGGAGAGAGACATGCCTGT 60.252 55.000 0.00 0.00 38.67 4.00
2103 2106 0.542938 CCACAGGTGGGAGAGAGACA 60.543 60.000 10.67 0.00 46.81 3.41
2115 2118 1.203137 TGTAGTAGCTCCACCACAGGT 60.203 52.381 0.00 0.00 35.62 4.00
2129 2132 2.168521 GACTGCTCCATTGGCTGTAGTA 59.831 50.000 15.11 0.98 40.81 1.82
2131 2134 1.209019 AGACTGCTCCATTGGCTGTAG 59.791 52.381 0.00 5.11 40.81 2.74
2132 2135 1.065926 CAGACTGCTCCATTGGCTGTA 60.066 52.381 0.00 0.00 40.81 2.74
2133 2136 0.322277 CAGACTGCTCCATTGGCTGT 60.322 55.000 0.00 0.00 42.77 4.40
2146 2149 1.270414 ATCCCAGCTGTCCCAGACTG 61.270 60.000 13.81 0.00 36.31 3.51
2151 2154 1.379916 CACAATCCCAGCTGTCCCA 59.620 57.895 13.81 0.00 0.00 4.37
2157 2160 0.974010 CATTGGCCACAATCCCAGCT 60.974 55.000 3.88 0.00 45.24 4.24
2159 2162 1.411246 CATCATTGGCCACAATCCCAG 59.589 52.381 3.88 0.00 45.24 4.45
2162 2165 2.696707 ACATCATCATTGGCCACAATCC 59.303 45.455 3.88 0.00 45.24 3.01
2178 2181 1.487976 GAAGCCAGGATCCTCACATCA 59.512 52.381 12.69 0.00 0.00 3.07
2183 2186 0.341258 AGGAGAAGCCAGGATCCTCA 59.659 55.000 12.69 0.00 37.66 3.86
2185 2188 0.043940 ACAGGAGAAGCCAGGATCCT 59.956 55.000 9.02 9.02 43.01 3.24
2188 2191 1.965754 GCGACAGGAGAAGCCAGGAT 61.966 60.000 0.00 0.00 40.02 3.24
2189 2192 2.650116 GCGACAGGAGAAGCCAGGA 61.650 63.158 0.00 0.00 40.02 3.86
2194 2197 2.095252 GTTCCGCGACAGGAGAAGC 61.095 63.158 8.23 0.00 41.98 3.86
2211 2214 1.000955 AGCTCGATTTGTTGGACTCGT 59.999 47.619 0.00 0.00 33.10 4.18
2214 2217 1.160137 GCAGCTCGATTTGTTGGACT 58.840 50.000 0.00 0.00 0.00 3.85
2220 2223 1.377725 CCCCTGCAGCTCGATTTGT 60.378 57.895 8.66 0.00 0.00 2.83
2258 2261 4.977739 TGGAAACCTGATCCCTATCATCTT 59.022 41.667 0.00 0.00 41.29 2.40
2260 2263 4.349342 AGTGGAAACCTGATCCCTATCATC 59.651 45.833 0.00 0.00 41.29 2.92
2261 2264 4.103785 CAGTGGAAACCTGATCCCTATCAT 59.896 45.833 0.00 0.00 41.29 2.45
2262 2265 3.455910 CAGTGGAAACCTGATCCCTATCA 59.544 47.826 0.00 0.00 39.87 2.15
2278 2281 2.829384 GGCCCAACTCCACAGTGGA 61.829 63.158 21.68 21.68 45.98 4.02
2281 2284 0.550147 ATAGGGCCCAACTCCACAGT 60.550 55.000 27.56 0.25 0.00 3.55
2283 2286 1.570857 CCATAGGGCCCAACTCCACA 61.571 60.000 27.56 0.00 0.00 4.17
2332 2342 2.562912 CTGACCCACATGCGCAAC 59.437 61.111 17.11 0.71 0.00 4.17
2333 2343 3.364441 GCTGACCCACATGCGCAA 61.364 61.111 17.11 0.00 0.00 4.85
2336 2346 2.360350 AAGGCTGACCCACATGCG 60.360 61.111 0.00 0.00 36.11 4.73
2339 2349 3.090765 GGGAAGGCTGACCCACAT 58.909 61.111 20.58 0.00 44.96 3.21
2363 2373 4.214327 CCGGCTCTCTCGGGAAGC 62.214 72.222 10.02 10.02 43.45 3.86
2373 2383 4.316823 TGACCTGGTCCCGGCTCT 62.317 66.667 23.42 0.00 0.00 4.09
2393 2403 2.588314 CCTCAGCGAGGCATCTGC 60.588 66.667 10.89 7.02 43.29 4.26
2421 2431 1.227823 CGCCAACAACTCCTCCACA 60.228 57.895 0.00 0.00 0.00 4.17
2450 2460 2.417933 GCAGAATCAACCAGCTACACAG 59.582 50.000 0.00 0.00 0.00 3.66
2451 2461 2.426522 GCAGAATCAACCAGCTACACA 58.573 47.619 0.00 0.00 0.00 3.72
2453 2463 1.675714 CCGCAGAATCAACCAGCTACA 60.676 52.381 0.00 0.00 0.00 2.74
2456 2466 2.042831 GCCGCAGAATCAACCAGCT 61.043 57.895 0.00 0.00 0.00 4.24
2465 2475 2.233271 CAATATCCAAGGCCGCAGAAT 58.767 47.619 0.00 0.00 0.00 2.40
2466 2476 1.064758 ACAATATCCAAGGCCGCAGAA 60.065 47.619 0.00 0.00 0.00 3.02
2467 2477 0.546122 ACAATATCCAAGGCCGCAGA 59.454 50.000 0.00 0.00 0.00 4.26
2471 2481 0.664761 CAGCACAATATCCAAGGCCG 59.335 55.000 0.00 0.00 0.00 6.13
2488 2498 2.359602 CACTGCAGGCTCCACCAG 60.360 66.667 19.93 4.86 43.14 4.00
2514 2524 1.002544 TGCAACGTGGTCATATCACCA 59.997 47.619 0.00 0.00 44.69 4.17
2526 2536 1.009903 CCACCAATGCATGCAACGTG 61.010 55.000 26.68 26.40 0.00 4.49
2538 2548 0.968901 CCTCTGCATGCACCACCAAT 60.969 55.000 18.46 0.00 0.00 3.16
2539 2549 1.604308 CCTCTGCATGCACCACCAA 60.604 57.895 18.46 0.00 0.00 3.67
2561 2571 1.337071 ACGTAGCCATATCACCAGTCG 59.663 52.381 0.00 0.00 0.00 4.18
2563 2573 3.702548 TGTAACGTAGCCATATCACCAGT 59.297 43.478 0.00 0.00 0.00 4.00
2564 2574 4.316205 TGTAACGTAGCCATATCACCAG 57.684 45.455 0.00 0.00 0.00 4.00
2583 2593 2.511659 GCAGGTGCATCCATATCATGT 58.488 47.619 0.00 0.00 41.59 3.21
2615 2625 4.131088 GCGTCTCCACCGGACTCC 62.131 72.222 9.46 0.00 0.00 3.85
2616 2626 4.477975 CGCGTCTCCACCGGACTC 62.478 72.222 9.46 0.00 0.00 3.36
2656 2672 1.539827 GGACTTAATGTTGCCAAGCGT 59.460 47.619 0.00 0.00 0.00 5.07
2661 2677 2.161855 CAGCAGGACTTAATGTTGCCA 58.838 47.619 0.00 0.00 34.00 4.92
2678 2694 0.242017 CTTAAGCAACCCAGCACAGC 59.758 55.000 0.00 0.00 36.85 4.40
2679 2695 1.896220 TCTTAAGCAACCCAGCACAG 58.104 50.000 0.00 0.00 36.85 3.66
2688 2704 1.992667 GGCGCCAATTTCTTAAGCAAC 59.007 47.619 24.80 0.00 0.00 4.17
2730 2746 2.353323 GGACGAACTCCATTAACCACC 58.647 52.381 0.00 0.00 39.21 4.61
2736 2752 0.819582 GACCCGGACGAACTCCATTA 59.180 55.000 0.73 0.00 39.39 1.90
2775 2791 3.753797 AGCTGATCGATCTAGTATTGCGA 59.246 43.478 25.02 1.00 35.32 5.10
2808 2824 2.753966 CGCCGATGCCTTGGAGTTG 61.754 63.158 0.00 0.00 0.00 3.16
2859 2875 2.359850 GCCAACTCATCGGGCACA 60.360 61.111 0.00 0.00 46.92 4.57
2865 2881 1.066152 TCTGAGATCGCCAACTCATCG 59.934 52.381 0.00 0.00 41.35 3.84
2881 2897 1.219124 GGACAAGCGCATCCTCTGA 59.781 57.895 11.47 0.00 31.75 3.27
2883 2899 0.674895 GTTGGACAAGCGCATCCTCT 60.675 55.000 21.51 0.00 35.86 3.69
2888 2904 0.602638 TCGAAGTTGGACAAGCGCAT 60.603 50.000 11.47 0.00 0.00 4.73
2895 2911 5.637810 GTCAAACATATCTCGAAGTTGGACA 59.362 40.000 12.90 0.00 42.01 4.02
2922 2938 3.798202 CAAGTGTCTATCTTGTAGGGGC 58.202 50.000 0.00 0.00 37.90 5.80
2946 2962 1.815212 CGAAGATCGCTGCGATGGTG 61.815 60.000 38.44 21.77 46.50 4.17
2952 2968 3.147889 CTTGCCGAAGATCGCTGCG 62.148 63.158 17.25 17.25 43.07 5.18
2991 3007 2.032681 GCCGCTTGGTTCTCCACT 59.967 61.111 0.00 0.00 44.22 4.00
3003 3019 1.227263 CTAATGTGCTACGGCCGCT 60.227 57.895 28.58 15.49 37.74 5.52
3005 3021 0.031585 TAGCTAATGTGCTACGGCCG 59.968 55.000 26.86 26.86 43.74 6.13
3054 3070 2.756829 TCTTTACGCACGACATTGGAA 58.243 42.857 0.00 0.00 0.00 3.53
3070 3086 3.330701 TCCAGCTAACCAACTCCATCTTT 59.669 43.478 0.00 0.00 0.00 2.52
3085 3101 1.899814 AGACCACGAACATTCCAGCTA 59.100 47.619 0.00 0.00 0.00 3.32
3109 3125 2.027949 GCCTTTCTCCTAGCCGGACTA 61.028 57.143 5.05 5.44 36.69 2.59
3143 3159 4.383931 TGGTAGCCCTAGTAGAATCGAT 57.616 45.455 0.00 0.00 0.00 3.59
3145 3161 5.230942 CAAATGGTAGCCCTAGTAGAATCG 58.769 45.833 0.00 0.00 0.00 3.34
3210 3226 3.181488 CGGACCAAAGCATTGCATAATGA 60.181 43.478 11.91 0.00 45.21 2.57
3264 3280 0.266753 GATACCTCCCCTGGTACCCA 59.733 60.000 10.07 0.00 44.34 4.51
3271 3287 5.046304 CCACACTAATATGATACCTCCCCTG 60.046 48.000 0.00 0.00 0.00 4.45
3335 3351 3.173599 CGTACGCCGAAATGAAGTTAGA 58.826 45.455 0.52 0.00 39.56 2.10
3379 3395 3.469863 GACCACCGACAGCCACCAA 62.470 63.158 0.00 0.00 0.00 3.67
3421 3437 9.358872 GTTAACTCCTCCATGAAATTGATTTTC 57.641 33.333 0.00 0.00 43.42 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.