Multiple sequence alignment - TraesCS4B01G255800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G255800 chr4B 100.000 4234 0 0 1 4234 520525177 520520944 0.000000e+00 7819.0
1 TraesCS4B01G255800 chr4A 94.718 3711 185 9 1 3707 39829518 39833221 0.000000e+00 5757.0
2 TraesCS4B01G255800 chr4A 94.073 523 19 5 3721 4234 39833204 39833723 0.000000e+00 784.0
3 TraesCS4B01G255800 chr4D 93.121 3736 210 26 2 3722 424610185 424606482 0.000000e+00 5432.0
4 TraesCS4B01G255800 chr4D 76.746 2907 533 89 1352 4207 424599348 424596534 0.000000e+00 1491.0
5 TraesCS4B01G255800 chr4D 93.429 487 25 4 3721 4207 424606513 424606034 0.000000e+00 715.0
6 TraesCS4B01G255800 chr4D 88.889 108 12 0 171 278 424576783 424576676 2.660000e-27 134.0
7 TraesCS4B01G255800 chr3A 89.634 164 15 2 3 164 387767702 387767539 1.540000e-49 207.0
8 TraesCS4B01G255800 chr6D 88.235 170 18 2 3 170 16520612 16520443 7.180000e-48 202.0
9 TraesCS4B01G255800 chr6D 86.145 166 21 2 3 166 196164788 196164953 1.210000e-40 178.0
10 TraesCS4B01G255800 chr7D 88.889 162 16 2 3 162 219544030 219544191 9.290000e-47 198.0
11 TraesCS4B01G255800 chr6B 86.585 164 20 2 3 164 205433582 205433419 3.360000e-41 180.0
12 TraesCS4B01G255800 chrUn 85.802 162 15 6 6 164 320483709 320483553 9.420000e-37 165.0
13 TraesCS4B01G255800 chrUn 85.455 165 16 6 3 164 438679640 438679799 9.420000e-37 165.0
14 TraesCS4B01G255800 chr7A 97.727 44 1 0 174 217 194060970 194061013 4.540000e-10 76.8
15 TraesCS4B01G255800 chr7B 93.182 44 2 1 174 217 328975559 328975601 3.530000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G255800 chr4B 520520944 520525177 4233 True 7819.0 7819 100.0000 1 4234 1 chr4B.!!$R1 4233
1 TraesCS4B01G255800 chr4A 39829518 39833723 4205 False 3270.5 5757 94.3955 1 4234 2 chr4A.!!$F1 4233
2 TraesCS4B01G255800 chr4D 424606034 424610185 4151 True 3073.5 5432 93.2750 2 4207 2 chr4D.!!$R3 4205
3 TraesCS4B01G255800 chr4D 424596534 424599348 2814 True 1491.0 1491 76.7460 1352 4207 1 chr4D.!!$R2 2855

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 225 0.323360 GCCATGAACCTGTAGCCCAA 60.323 55.000 0.00 0.0 0.00 4.12 F
504 509 0.552848 CCATCTGGTGTAGGGCCAAT 59.447 55.000 6.18 0.0 35.32 3.16 F
939 945 1.393539 CTGTGGTCGCGTGGAAATTAG 59.606 52.381 5.77 0.0 0.00 1.73 F
2713 2755 1.130373 CATCAACGGTGTCCCAATTCG 59.870 52.381 0.00 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 2038 2.953648 ACTGTCCAAACCGTAAAAAGGG 59.046 45.455 0.00 0.0 0.00 3.95 R
2457 2480 3.751175 CGACTTTAAAGCCAGGACAATCA 59.249 43.478 15.24 0.0 0.00 2.57 R
2895 2942 1.094785 CCAATTGGGGTGCTTCTACG 58.905 55.000 17.36 0.0 0.00 3.51 R
3806 3874 0.248289 GCGCCCAAGTAGGTACTCAA 59.752 55.000 0.00 0.0 41.75 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 54 6.480524 TGAAAGTGATGATCAAACGGTAAG 57.519 37.500 0.00 0.00 0.00 2.34
221 225 0.323360 GCCATGAACCTGTAGCCCAA 60.323 55.000 0.00 0.00 0.00 4.12
297 301 1.041437 GAGATGAACTCCCCCTACGG 58.959 60.000 0.00 0.00 39.53 4.02
305 310 3.695357 ACTCCCCCTACGGTAAGTATT 57.305 47.619 0.00 0.00 34.34 1.89
306 311 3.303049 ACTCCCCCTACGGTAAGTATTG 58.697 50.000 0.00 0.00 34.34 1.90
307 312 3.303049 CTCCCCCTACGGTAAGTATTGT 58.697 50.000 0.00 0.00 34.34 2.71
318 323 4.342951 CGGTAAGTATTGTATCTGGGGTGA 59.657 45.833 0.00 0.00 0.00 4.02
353 358 1.097232 CATCAACATGATGTGGCGGT 58.903 50.000 11.31 0.00 46.80 5.68
357 362 2.751036 CATGATGTGGCGGTGGCA 60.751 61.111 0.00 0.00 42.47 4.92
376 381 9.150348 CGGTGGCAGAAAATTTCTTAATAATTT 57.850 29.630 5.36 3.74 38.11 1.82
400 405 4.507869 GGGTGTGGAAATGGGGGTATATAC 60.508 50.000 4.14 4.14 0.00 1.47
491 496 2.836360 GCATGTGGGGCCCATCTG 60.836 66.667 31.48 27.64 35.28 2.90
504 509 0.552848 CCATCTGGTGTAGGGCCAAT 59.447 55.000 6.18 0.00 35.32 3.16
939 945 1.393539 CTGTGGTCGCGTGGAAATTAG 59.606 52.381 5.77 0.00 0.00 1.73
998 1004 8.317679 GGAATATTGCTCTATATGTGTTCTCCT 58.682 37.037 0.00 0.00 0.00 3.69
1008 1014 6.760440 ATATGTGTTCTCCTCCATCTCAAT 57.240 37.500 0.00 0.00 0.00 2.57
1018 1024 7.473593 TCTCCTCCATCTCAATATGTCTCATA 58.526 38.462 0.00 0.00 0.00 2.15
1095 1101 3.133003 GCCTGGCAGATCAACTTACTCTA 59.867 47.826 17.94 0.00 0.00 2.43
1197 1204 5.245531 TGTACAATGAATCTCCCAGTTGTC 58.754 41.667 0.00 0.00 32.64 3.18
1253 1260 6.003326 ACATACATGTGGAGTCAATCAACAA 58.997 36.000 9.11 0.00 45.19 2.83
1256 1263 6.409524 ACATGTGGAGTCAATCAACAAAAT 57.590 33.333 0.00 0.00 45.19 1.82
1264 1271 8.869109 TGGAGTCAATCAACAAAATAATTCCTT 58.131 29.630 0.00 0.00 0.00 3.36
1438 1446 8.364142 CAATAGTATGAAGGAAAACCCAACAAA 58.636 33.333 0.00 0.00 37.41 2.83
1472 1480 6.949578 ATGGATTGCAATTTTAGTTCAACG 57.050 33.333 14.33 0.00 0.00 4.10
1520 1531 5.192176 TCATATGCACAAGCTTTACCATCA 58.808 37.500 0.00 0.00 42.74 3.07
1791 1809 3.605634 TGGACACAATCTTAATGTCGGG 58.394 45.455 0.00 0.00 43.03 5.14
2019 2038 2.856557 GGTTTAATGACTCGCGTACTCC 59.143 50.000 5.77 0.00 0.00 3.85
2153 2175 8.794335 AAGGTAACATGATTTTAGAGAACTCC 57.206 34.615 0.00 0.00 41.41 3.85
2476 2499 4.524328 ACCTTGATTGTCCTGGCTTTAAAG 59.476 41.667 11.02 11.02 0.00 1.85
2521 2544 3.104512 CCCGGTGATATCATAAGCCCTA 58.895 50.000 9.02 0.00 0.00 3.53
2534 2557 5.954752 TCATAAGCCCTATCTCTGGTATCAG 59.045 44.000 0.00 0.00 42.21 2.90
2575 2598 8.794553 CGATTACTATTAGAGTGTCCAAGGTAT 58.205 37.037 0.00 0.00 39.39 2.73
2713 2755 1.130373 CATCAACGGTGTCCCAATTCG 59.870 52.381 0.00 0.00 0.00 3.34
2996 3043 3.620488 AGCGCAATTCTTTTATGGAGGA 58.380 40.909 11.47 0.00 0.00 3.71
3110 3157 1.418342 CCTTGGTTGTACGGCGATCG 61.418 60.000 16.62 11.69 45.88 3.69
3138 3185 4.215399 TGGCCTGATAAAAGTTCGTTGAAG 59.785 41.667 3.32 0.00 0.00 3.02
3165 3212 5.009911 TGGCAATGCATCACCATATTTAGTC 59.990 40.000 14.91 0.00 0.00 2.59
3194 3241 9.046296 GGCCGATTTATTACTCATTATAGATGG 57.954 37.037 0.00 0.00 0.00 3.51
3213 3260 6.367983 AGATGGTCCATACTTGCATATTGTT 58.632 36.000 3.72 0.00 0.00 2.83
3329 3381 2.345760 GCTCTGCACCCCATTGTGG 61.346 63.158 0.00 0.00 36.73 4.17
3343 3395 4.396166 CCCATTGTGGTTGAATAGACACTC 59.604 45.833 0.00 0.00 35.17 3.51
3370 3422 7.602644 GGAAAGGATAAATATGTGTATGCTCGA 59.397 37.037 0.00 0.00 29.18 4.04
3386 3438 2.149578 CTCGATCAGGGATTTGGATGC 58.850 52.381 0.00 0.00 0.00 3.91
3417 3469 6.790319 AGATACATTCCCTTGTAACTTTGGT 58.210 36.000 0.00 0.00 33.04 3.67
3484 3537 1.494721 AGGTGACATGGTTGGTTCACT 59.505 47.619 10.59 0.00 0.00 3.41
3493 3546 5.072600 ACATGGTTGGTTCACTAAGGTTCTA 59.927 40.000 0.00 0.00 0.00 2.10
3555 3613 8.958119 TGACATTAACTAATCAATGGTAGGAC 57.042 34.615 0.00 0.00 36.63 3.85
3640 3698 2.960384 TGTTCTTTGACGGAGGTCTGTA 59.040 45.455 0.00 0.00 43.79 2.74
3689 3757 4.040829 TCGTAGTACCTTCGAGGGATATGA 59.959 45.833 22.01 15.99 40.58 2.15
3690 3758 4.942483 CGTAGTACCTTCGAGGGATATGAT 59.058 45.833 22.01 0.00 40.58 2.45
3691 3759 6.070596 TCGTAGTACCTTCGAGGGATATGATA 60.071 42.308 22.01 0.00 40.58 2.15
3692 3760 6.766944 CGTAGTACCTTCGAGGGATATGATAT 59.233 42.308 22.01 0.00 40.58 1.63
3693 3761 7.254829 CGTAGTACCTTCGAGGGATATGATATG 60.255 44.444 22.01 5.85 40.58 1.78
3694 3762 6.732487 AGTACCTTCGAGGGATATGATATGA 58.268 40.000 22.01 0.00 40.58 2.15
3695 3763 7.358263 AGTACCTTCGAGGGATATGATATGAT 58.642 38.462 22.01 0.00 40.58 2.45
3696 3764 7.841729 AGTACCTTCGAGGGATATGATATGATT 59.158 37.037 22.01 0.00 40.58 2.57
3697 3765 6.882656 ACCTTCGAGGGATATGATATGATTG 58.117 40.000 22.01 0.00 40.58 2.67
3698 3766 6.669591 ACCTTCGAGGGATATGATATGATTGA 59.330 38.462 22.01 0.00 40.58 2.57
3699 3767 7.147759 ACCTTCGAGGGATATGATATGATTGAG 60.148 40.741 22.01 0.00 40.58 3.02
3700 3768 6.154203 TCGAGGGATATGATATGATTGAGC 57.846 41.667 0.00 0.00 0.00 4.26
3701 3769 5.658190 TCGAGGGATATGATATGATTGAGCA 59.342 40.000 0.00 0.00 0.00 4.26
3702 3770 6.155049 TCGAGGGATATGATATGATTGAGCAA 59.845 38.462 0.00 0.00 0.00 3.91
3703 3771 6.990939 CGAGGGATATGATATGATTGAGCAAT 59.009 38.462 0.00 0.00 0.00 3.56
3704 3772 7.171167 CGAGGGATATGATATGATTGAGCAATC 59.829 40.741 14.62 14.62 45.55 2.67
3705 3773 7.288560 AGGGATATGATATGATTGAGCAATCC 58.711 38.462 17.77 5.74 44.93 3.01
3706 3774 7.129038 AGGGATATGATATGATTGAGCAATCCT 59.871 37.037 17.77 11.98 44.93 3.24
3707 3775 7.778853 GGGATATGATATGATTGAGCAATCCTT 59.221 37.037 17.77 9.78 44.93 3.36
3708 3776 8.838365 GGATATGATATGATTGAGCAATCCTTC 58.162 37.037 17.77 12.70 44.93 3.46
3709 3777 9.616156 GATATGATATGATTGAGCAATCCTTCT 57.384 33.333 17.77 5.67 44.93 2.85
3710 3778 9.976776 ATATGATATGATTGAGCAATCCTTCTT 57.023 29.630 17.77 12.44 44.93 2.52
3711 3779 8.707796 ATGATATGATTGAGCAATCCTTCTTT 57.292 30.769 17.77 0.99 44.93 2.52
3712 3780 8.529424 TGATATGATTGAGCAATCCTTCTTTT 57.471 30.769 17.77 0.13 44.93 2.27
3713 3781 8.974238 TGATATGATTGAGCAATCCTTCTTTTT 58.026 29.630 17.77 0.00 44.93 1.94
3747 3815 1.206523 GAGCAATCCTACCGTTACGC 58.793 55.000 0.00 0.00 0.00 4.42
3757 3825 2.288961 ACCGTTACGCGAATGATCTT 57.711 45.000 15.93 0.00 44.77 2.40
3760 3828 1.187271 CGTTACGCGAATGATCTTCCG 59.813 52.381 15.93 4.73 44.77 4.30
3762 3830 2.572191 TACGCGAATGATCTTCCGTT 57.428 45.000 15.93 0.00 31.48 4.44
3763 3831 2.572191 ACGCGAATGATCTTCCGTTA 57.428 45.000 15.93 0.00 0.00 3.18
3806 3874 0.261696 GCACCCATCATTACCCCCTT 59.738 55.000 0.00 0.00 0.00 3.95
3989 4057 4.473559 CCTTGGTACTTCTAAGGGGATGAA 59.526 45.833 9.44 0.00 46.67 2.57
4070 4138 0.321298 TGAGCACTTTAACCTCGGCC 60.321 55.000 0.00 0.00 0.00 6.13
4085 4153 0.461870 CGGCCGATCACTCCATTCAA 60.462 55.000 24.07 0.00 0.00 2.69
4207 4276 1.376683 GCATCACGTAAGGTGGGCA 60.377 57.895 0.00 0.00 46.96 5.36
4208 4277 0.958382 GCATCACGTAAGGTGGGCAA 60.958 55.000 0.00 0.00 46.96 4.52
4209 4278 1.750193 CATCACGTAAGGTGGGCAAT 58.250 50.000 0.00 0.00 46.96 3.56
4210 4279 2.091541 CATCACGTAAGGTGGGCAATT 58.908 47.619 0.00 0.00 46.96 2.32
4212 4281 3.420300 TCACGTAAGGTGGGCAATTTA 57.580 42.857 0.00 0.00 46.96 1.40
4213 4282 3.340034 TCACGTAAGGTGGGCAATTTAG 58.660 45.455 0.00 0.00 46.96 1.85
4214 4283 3.008157 TCACGTAAGGTGGGCAATTTAGA 59.992 43.478 0.00 0.00 46.96 2.10
4215 4284 3.945285 CACGTAAGGTGGGCAATTTAGAT 59.055 43.478 0.00 0.00 43.16 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 54 4.578105 CACTCCTCTTATGCATTTTCCCTC 59.422 45.833 3.54 0.00 0.00 4.30
221 225 1.614525 TCATGAGCAGTCTGGCCCT 60.615 57.895 0.00 0.00 0.00 5.19
227 231 3.118702 CCAAGATGAGTCATGAGCAGTCT 60.119 47.826 11.20 0.00 0.00 3.24
297 301 8.621286 CATTTTCACCCCAGATACAATACTTAC 58.379 37.037 0.00 0.00 0.00 2.34
305 310 5.512942 TCTTCATTTTCACCCCAGATACA 57.487 39.130 0.00 0.00 0.00 2.29
306 311 6.681368 GCAATCTTCATTTTCACCCCAGATAC 60.681 42.308 0.00 0.00 0.00 2.24
307 312 5.360714 GCAATCTTCATTTTCACCCCAGATA 59.639 40.000 0.00 0.00 0.00 1.98
318 323 6.349243 TGTTGATGAGGCAATCTTCATTTT 57.651 33.333 7.34 0.00 40.62 1.82
353 358 9.447157 CCCAAATTATTAAGAAATTTTCTGCCA 57.553 29.630 12.27 0.76 40.59 4.92
376 381 0.776479 TACCCCCATTTCCACACCCA 60.776 55.000 0.00 0.00 0.00 4.51
384 389 3.583966 TGGTCCGTATATACCCCCATTTC 59.416 47.826 7.30 0.00 34.69 2.17
491 496 1.802553 TAGGAGATTGGCCCTACACC 58.197 55.000 0.00 0.00 34.11 4.16
504 509 2.702478 CACATCAGAAGGCCATAGGAGA 59.298 50.000 5.01 0.00 0.00 3.71
615 620 2.912956 TCCAGTTCCCAATGCTAGTTCT 59.087 45.455 0.00 0.00 0.00 3.01
666 672 8.795786 TCAATTACAAACTTTGTGCATACTTC 57.204 30.769 16.09 0.00 45.03 3.01
709 715 3.314541 ACTACGTACTGAGCCAAAAGG 57.685 47.619 0.00 0.00 0.00 3.11
880 886 4.351874 AATGATATACAACCCCCTCACG 57.648 45.455 0.00 0.00 0.00 4.35
939 945 8.283708 AGTTCTATTATATAGAGGGGCTACTCC 58.716 40.741 6.21 0.00 38.26 3.85
1197 1204 7.864108 TCTATTTCCACATCCAAACACATAG 57.136 36.000 0.00 0.00 0.00 2.23
1256 1263 9.009675 TGGATGGTTATAGGAAAGAAGGAATTA 57.990 33.333 0.00 0.00 0.00 1.40
1414 1422 8.664669 ATTTGTTGGGTTTTCCTTCATACTAT 57.335 30.769 0.00 0.00 40.46 2.12
1496 1507 5.829391 TGATGGTAAAGCTTGTGCATATGAT 59.171 36.000 6.97 0.00 42.74 2.45
1650 1663 8.184192 GGAGGTTATTCATACACTTCAACAATG 58.816 37.037 0.00 0.00 0.00 2.82
1654 1667 7.770897 AGATGGAGGTTATTCATACACTTCAAC 59.229 37.037 0.00 0.00 0.00 3.18
1698 1716 4.593597 CGTCAAATGTACGGCAAACTAT 57.406 40.909 0.00 0.00 36.71 2.12
1791 1809 4.030452 GCACCCGCTGACAGTTGC 62.030 66.667 3.99 4.73 34.30 4.17
1956 1974 8.908903 ACATAAGTATTGGAAACACAAGTCAAA 58.091 29.630 0.00 0.00 42.67 2.69
1964 1982 8.241367 CCAAACCTACATAAGTATTGGAAACAC 58.759 37.037 3.83 0.00 42.67 3.32
2019 2038 2.953648 ACTGTCCAAACCGTAAAAAGGG 59.046 45.455 0.00 0.00 0.00 3.95
2345 2368 8.911247 ATTCGCTCATTTTTATAAACAACTCC 57.089 30.769 0.00 0.00 0.00 3.85
2385 2408 8.627208 AACATATCATTTAGATGTCATCCCAC 57.373 34.615 9.29 0.00 39.10 4.61
2457 2480 3.751175 CGACTTTAAAGCCAGGACAATCA 59.249 43.478 15.24 0.00 0.00 2.57
2521 2544 4.038162 GCGTTTCCTACTGATACCAGAGAT 59.962 45.833 0.00 0.00 43.02 2.75
2534 2557 3.681417 AGTAATCGTTTGGCGTTTCCTAC 59.319 43.478 0.00 0.00 42.13 3.18
2713 2755 3.451178 TGATGCTGGGAAGTAACCTACTC 59.549 47.826 0.00 0.00 38.26 2.59
2895 2942 1.094785 CCAATTGGGGTGCTTCTACG 58.905 55.000 17.36 0.00 0.00 3.51
2996 3043 1.838077 CACTAAGATTTCCCTCCCGGT 59.162 52.381 0.00 0.00 0.00 5.28
3110 3157 6.190954 ACGAACTTTTATCAGGCCAATAAC 57.809 37.500 5.01 0.00 0.00 1.89
3138 3185 2.389962 ATGGTGATGCATTGCCAAAC 57.610 45.000 21.67 1.36 34.39 2.93
3165 3212 8.188799 TCTATAATGAGTAATAAATCGGCCGAG 58.811 37.037 33.87 12.79 0.00 4.63
3194 3241 6.265577 GTTCCAACAATATGCAAGTATGGAC 58.734 40.000 8.32 2.87 35.57 4.02
3213 3260 7.556275 CCAAAATGCTATCTTTACTAGGTTCCA 59.444 37.037 0.00 0.00 0.00 3.53
3329 3381 4.817517 TCCTTTCCGAGTGTCTATTCAAC 58.182 43.478 0.00 0.00 0.00 3.18
3343 3395 7.411912 CGAGCATACACATATTTATCCTTTCCG 60.412 40.741 0.00 0.00 0.00 4.30
3370 3422 6.503217 TCTTCTATAGCATCCAAATCCCTGAT 59.497 38.462 0.00 0.00 0.00 2.90
3417 3469 0.946528 CACGATACGACCGGGTGATA 59.053 55.000 3.30 0.00 0.00 2.15
3476 3529 3.514309 GGAGCTAGAACCTTAGTGAACCA 59.486 47.826 0.00 0.00 0.00 3.67
3484 3537 2.317040 CATCCGGGAGCTAGAACCTTA 58.683 52.381 0.00 0.00 0.00 2.69
3710 3778 7.255242 GGATTGCTCGATCATATTCTCCAAAAA 60.255 37.037 0.00 0.00 0.00 1.94
3711 3779 6.205464 GGATTGCTCGATCATATTCTCCAAAA 59.795 38.462 0.00 0.00 0.00 2.44
3712 3780 5.702670 GGATTGCTCGATCATATTCTCCAAA 59.297 40.000 0.00 0.00 0.00 3.28
3713 3781 5.012458 AGGATTGCTCGATCATATTCTCCAA 59.988 40.000 0.00 0.00 0.00 3.53
3714 3782 4.529769 AGGATTGCTCGATCATATTCTCCA 59.470 41.667 0.00 0.00 0.00 3.86
3715 3783 5.083533 AGGATTGCTCGATCATATTCTCC 57.916 43.478 0.00 0.00 0.00 3.71
3716 3784 6.039616 GGTAGGATTGCTCGATCATATTCTC 58.960 44.000 0.00 0.00 0.00 2.87
3717 3785 5.393569 CGGTAGGATTGCTCGATCATATTCT 60.394 44.000 0.00 0.00 0.00 2.40
3718 3786 4.800993 CGGTAGGATTGCTCGATCATATTC 59.199 45.833 0.00 0.00 0.00 1.75
3719 3787 4.220821 ACGGTAGGATTGCTCGATCATATT 59.779 41.667 0.00 0.00 0.00 1.28
3747 3815 8.182227 TGTAGCTATATAACGGAAGATCATTCG 58.818 37.037 0.00 0.00 0.00 3.34
3757 3825 6.946583 AGTCAGGAATGTAGCTATATAACGGA 59.053 38.462 3.12 3.76 0.00 4.69
3762 3830 8.740906 GCACTTAGTCAGGAATGTAGCTATATA 58.259 37.037 3.12 0.00 0.00 0.86
3763 3831 7.233553 TGCACTTAGTCAGGAATGTAGCTATAT 59.766 37.037 0.00 0.00 0.00 0.86
3806 3874 0.248289 GCGCCCAAGTAGGTACTCAA 59.752 55.000 0.00 0.00 41.75 3.02
3844 3912 3.328050 CCAAAAGAGTGTCTAGGGACCTT 59.672 47.826 0.00 0.00 41.47 3.50
3989 4057 3.118112 CAGTTGGATGCAACTCTCCCTAT 60.118 47.826 27.56 4.08 42.87 2.57
4070 4138 5.295045 TGAATCATGTTGAATGGAGTGATCG 59.705 40.000 0.00 0.00 0.00 3.69
4085 4153 7.448161 TGTTTCTAGGAACACATTGAATCATGT 59.552 33.333 12.84 0.00 34.77 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.