Multiple sequence alignment - TraesCS4B01G255500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4B01G255500
chr4B
100.000
4477
0
0
1
4477
520395486
520399962
0.000000e+00
8268.0
1
TraesCS4B01G255500
chr4D
92.535
3242
148
53
1299
4477
424466299
424469509
0.000000e+00
4560.0
2
TraesCS4B01G255500
chr4D
84.930
710
39
34
594
1241
424465513
424466216
0.000000e+00
656.0
3
TraesCS4B01G255500
chr4A
92.695
3176
164
40
1299
4428
40252842
40249689
0.000000e+00
4518.0
4
TraesCS4B01G255500
chr4A
89.329
656
35
9
659
1283
40253539
40252888
0.000000e+00
791.0
5
TraesCS4B01G255500
chr4A
88.350
103
10
2
561
662
40253815
40253714
6.080000e-24
122.0
6
TraesCS4B01G255500
chr5D
94.708
548
21
1
1
540
494779791
494780338
0.000000e+00
845.0
7
TraesCS4B01G255500
chr5D
88.848
538
48
4
4
533
370591819
370592352
0.000000e+00
651.0
8
TraesCS4B01G255500
chr5D
87.729
546
59
1
1
538
536750091
536750636
8.170000e-177
630.0
9
TraesCS4B01G255500
chr1D
94.717
530
20
1
1
522
92252462
92252991
0.000000e+00
817.0
10
TraesCS4B01G255500
chr1D
94.096
542
23
2
1
534
382252164
382252704
0.000000e+00
815.0
11
TraesCS4B01G255500
chr7D
93.761
545
25
2
1
537
134840635
134841178
0.000000e+00
809.0
12
TraesCS4B01G255500
chr5B
92.435
542
32
2
1
534
657434942
657434402
0.000000e+00
765.0
13
TraesCS4B01G255500
chr3D
92.096
544
34
2
1
535
520424622
520424079
0.000000e+00
758.0
14
TraesCS4B01G255500
chr7B
84.604
682
60
21
1299
1960
407389892
407390548
1.760000e-178
636.0
15
TraesCS4B01G255500
chrUn
88.957
489
54
0
47
535
1510353
1509865
4.950000e-169
604.0
16
TraesCS4B01G255500
chrUn
92.126
254
14
3
1588
1835
479459998
479460251
1.980000e-93
353.0
17
TraesCS4B01G255500
chrUn
80.488
123
12
5
1846
1956
479460245
479460367
2.870000e-12
84.2
18
TraesCS4B01G255500
chr1B
92.635
353
20
3
1489
1835
516975216
516974864
1.860000e-138
503.0
19
TraesCS4B01G255500
chr1B
92.351
353
21
3
1489
1835
117304958
117305310
8.650000e-137
497.0
20
TraesCS4B01G255500
chr1B
80.488
123
12
5
1846
1956
117305304
117305426
2.870000e-12
84.2
21
TraesCS4B01G255500
chr1B
80.488
123
12
5
1846
1956
516974870
516974748
2.870000e-12
84.2
22
TraesCS4B01G255500
chr3A
87.088
364
36
3
1489
1842
486034924
486035286
6.980000e-108
401.0
23
TraesCS4B01G255500
chr3A
92.424
66
5
0
1841
1906
486036652
486036717
1.330000e-15
95.3
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4B01G255500
chr4B
520395486
520399962
4476
False
8268.000000
8268
100.000000
1
4477
1
chr4B.!!$F1
4476
1
TraesCS4B01G255500
chr4D
424465513
424469509
3996
False
2608.000000
4560
88.732500
594
4477
2
chr4D.!!$F1
3883
2
TraesCS4B01G255500
chr4A
40249689
40253815
4126
True
1810.333333
4518
90.124667
561
4428
3
chr4A.!!$R1
3867
3
TraesCS4B01G255500
chr5D
494779791
494780338
547
False
845.000000
845
94.708000
1
540
1
chr5D.!!$F2
539
4
TraesCS4B01G255500
chr5D
370591819
370592352
533
False
651.000000
651
88.848000
4
533
1
chr5D.!!$F1
529
5
TraesCS4B01G255500
chr5D
536750091
536750636
545
False
630.000000
630
87.729000
1
538
1
chr5D.!!$F3
537
6
TraesCS4B01G255500
chr1D
92252462
92252991
529
False
817.000000
817
94.717000
1
522
1
chr1D.!!$F1
521
7
TraesCS4B01G255500
chr1D
382252164
382252704
540
False
815.000000
815
94.096000
1
534
1
chr1D.!!$F2
533
8
TraesCS4B01G255500
chr7D
134840635
134841178
543
False
809.000000
809
93.761000
1
537
1
chr7D.!!$F1
536
9
TraesCS4B01G255500
chr5B
657434402
657434942
540
True
765.000000
765
92.435000
1
534
1
chr5B.!!$R1
533
10
TraesCS4B01G255500
chr3D
520424079
520424622
543
True
758.000000
758
92.096000
1
535
1
chr3D.!!$R1
534
11
TraesCS4B01G255500
chr7B
407389892
407390548
656
False
636.000000
636
84.604000
1299
1960
1
chr7B.!!$F1
661
12
TraesCS4B01G255500
chr3A
486034924
486036717
1793
False
248.150000
401
89.756000
1489
1906
2
chr3A.!!$F1
417
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
578
588
0.171231
GTTTCTGGGAATCAAGCCGC
59.829
55.0
0.00
0.0
0.0
6.53
F
1380
1703
0.037447
GGGAGAGCAGCTTCAACCTT
59.963
55.0
0.00
0.0
0.0
3.50
F
2100
3825
0.530288
TCGATTCGAGCACATCACCA
59.470
50.0
4.29
0.0
0.0
4.17
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2268
4008
0.108424
GCATCGACAGGAAGCTCACT
60.108
55.0
0.00
0.00
36.46
3.41
R
2836
4576
0.322277
ACAGCTTCTGGCAGTCCATG
60.322
55.0
15.27
11.89
42.51
3.66
R
3985
5768
0.250295
TCTTTTGACCCAGGCAGACG
60.250
55.0
0.00
0.00
0.00
4.18
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
67
76
5.295292
CGCTTGATGAAGGTGAATGTAGATT
59.705
40.000
0.00
0.00
0.00
2.40
94
103
1.608055
TTCTGGACGACGAGGTGTAA
58.392
50.000
0.00
0.00
0.00
2.41
258
267
3.198068
ACAAGCTATACATGTGGCTTCG
58.802
45.455
23.14
20.42
42.15
3.79
387
397
9.985730
AATTTTGTTCATGAATTTAGAAGCTCA
57.014
25.926
12.12
0.00
0.00
4.26
441
451
0.475044
TTAAACTGGGGCTTGGTCGT
59.525
50.000
0.00
0.00
0.00
4.34
549
559
2.629002
AAAAAGTCGCATGGTCGCT
58.371
47.368
0.00
0.00
0.00
4.93
550
560
0.238289
AAAAAGTCGCATGGTCGCTG
59.762
50.000
0.00
0.00
0.00
5.18
551
561
1.577328
AAAAGTCGCATGGTCGCTGG
61.577
55.000
0.00
0.00
0.00
4.85
552
562
2.449031
AAAGTCGCATGGTCGCTGGA
62.449
55.000
0.00
0.00
0.00
3.86
553
563
2.842394
AAGTCGCATGGTCGCTGGAG
62.842
60.000
0.00
0.00
0.00
3.86
554
564
4.147449
TCGCATGGTCGCTGGAGG
62.147
66.667
0.00
0.00
0.00
4.30
564
574
4.035102
GCTGGAGGCCGGGTTTCT
62.035
66.667
2.18
0.00
34.27
2.52
565
575
2.045926
CTGGAGGCCGGGTTTCTG
60.046
66.667
2.18
0.00
0.00
3.02
575
585
0.811281
CGGGTTTCTGGGAATCAAGC
59.189
55.000
0.00
0.00
0.00
4.01
578
588
0.171231
GTTTCTGGGAATCAAGCCGC
59.829
55.000
0.00
0.00
0.00
6.53
580
590
0.392998
TTCTGGGAATCAAGCCGCTC
60.393
55.000
0.00
0.00
0.00
5.03
586
596
1.078143
AATCAAGCCGCTCTGGTCC
60.078
57.895
0.00
0.00
41.21
4.46
590
600
2.654079
AAGCCGCTCTGGTCCTGAG
61.654
63.158
18.99
18.99
41.21
3.35
675
864
4.495844
CCGAAACTCAAAAACACTGAGACC
60.496
45.833
6.83
0.00
42.51
3.85
711
900
2.028020
CCCAGACCACTAAACCTCACTC
60.028
54.545
0.00
0.00
0.00
3.51
736
925
7.340743
TCAAGACAAAGATTCCAGTGGTTAAAA
59.659
33.333
9.54
0.00
0.00
1.52
781
970
0.886490
AGCCGACACAAGCTTCCAAG
60.886
55.000
0.00
0.00
35.22
3.61
843
1032
2.795297
GAGACAGGACGCGAGAGG
59.205
66.667
15.93
1.50
0.00
3.69
971
1237
0.533531
TGCACCTGCTTCACTCACTG
60.534
55.000
0.00
0.00
42.66
3.66
1029
1303
3.066900
ACGTCGGGTGAGATAAAGATGAG
59.933
47.826
0.00
0.00
0.00
2.90
1031
1311
2.034685
TCGGGTGAGATAAAGATGAGCG
59.965
50.000
0.00
0.00
0.00
5.03
1034
1314
3.553922
GGGTGAGATAAAGATGAGCGGAG
60.554
52.174
0.00
0.00
0.00
4.63
1058
1345
1.287739
AGTGAGAAGGGAGGAGAGAGG
59.712
57.143
0.00
0.00
0.00
3.69
1184
1471
0.248498
TTGAATCTACGAGCTCGCCG
60.248
55.000
34.83
24.86
44.43
6.46
1185
1472
2.011881
GAATCTACGAGCTCGCCGC
61.012
63.158
34.83
15.05
44.43
6.53
1209
1496
0.313672
TTGGCGCCATGAAACTGTTC
59.686
50.000
33.25
0.00
0.00
3.18
1241
1531
0.508641
CAGCGTGCAGTGACAAGTAC
59.491
55.000
0.00
0.00
0.00
2.73
1242
1532
0.389391
AGCGTGCAGTGACAAGTACT
59.611
50.000
0.00
0.00
0.00
2.73
1243
1533
0.784778
GCGTGCAGTGACAAGTACTC
59.215
55.000
0.00
0.00
0.00
2.59
1244
1534
1.419374
CGTGCAGTGACAAGTACTCC
58.581
55.000
0.00
0.00
0.00
3.85
1245
1535
1.419374
GTGCAGTGACAAGTACTCCG
58.581
55.000
0.00
0.00
0.00
4.63
1246
1536
1.037493
TGCAGTGACAAGTACTCCGT
58.963
50.000
0.00
0.00
0.00
4.69
1247
1537
2.030540
GTGCAGTGACAAGTACTCCGTA
60.031
50.000
0.00
0.00
0.00
4.02
1255
1545
9.017669
CAGTGACAAGTACTCCGTATTTTATAC
57.982
37.037
0.00
0.00
0.00
1.47
1263
1556
7.864379
AGTACTCCGTATTTTATACGTGGAATG
59.136
37.037
15.54
2.75
39.09
2.67
1283
1576
6.431234
GGAATGACATACTGAACCTGAAGTTT
59.569
38.462
0.00
0.00
39.40
2.66
1285
1578
5.924356
TGACATACTGAACCTGAAGTTTCA
58.076
37.500
0.00
0.00
39.40
2.69
1287
1580
6.650807
TGACATACTGAACCTGAAGTTTCATC
59.349
38.462
0.00
0.00
39.40
2.92
1288
1581
5.940470
ACATACTGAACCTGAAGTTTCATCC
59.060
40.000
0.00
0.00
39.40
3.51
1291
1584
4.256920
CTGAACCTGAAGTTTCATCCGAT
58.743
43.478
0.00
0.00
39.40
4.18
1292
1585
5.046591
ACTGAACCTGAAGTTTCATCCGATA
60.047
40.000
0.00
0.00
39.40
2.92
1294
1587
6.234920
TGAACCTGAAGTTTCATCCGATAAA
58.765
36.000
0.00
0.00
39.40
1.40
1295
1588
6.712998
TGAACCTGAAGTTTCATCCGATAAAA
59.287
34.615
0.00
0.00
39.40
1.52
1378
1701
1.377856
GGGGAGAGCAGCTTCAACC
60.378
63.158
0.00
0.00
0.00
3.77
1380
1703
0.037447
GGGAGAGCAGCTTCAACCTT
59.963
55.000
0.00
0.00
0.00
3.50
1409
1743
0.558712
ACCAACCAGCCCCAACTTTA
59.441
50.000
0.00
0.00
0.00
1.85
1410
1744
0.966179
CCAACCAGCCCCAACTTTAC
59.034
55.000
0.00
0.00
0.00
2.01
1413
1747
2.698274
CAACCAGCCCCAACTTTACTTT
59.302
45.455
0.00
0.00
0.00
2.66
1414
1748
2.594131
ACCAGCCCCAACTTTACTTTC
58.406
47.619
0.00
0.00
0.00
2.62
1415
1749
1.893137
CCAGCCCCAACTTTACTTTCC
59.107
52.381
0.00
0.00
0.00
3.13
1422
1756
1.600485
CAACTTTACTTTCCACCGCGT
59.400
47.619
4.92
0.00
0.00
6.01
1424
1760
1.223187
CTTTACTTTCCACCGCGTGT
58.777
50.000
4.92
0.00
0.00
4.49
1426
1762
0.938713
TTACTTTCCACCGCGTGTTG
59.061
50.000
4.92
0.00
0.00
3.33
1430
1766
0.878523
TTTCCACCGCGTGTTGAGAG
60.879
55.000
4.92
0.00
0.00
3.20
1433
1769
0.670546
CCACCGCGTGTTGAGAGATT
60.671
55.000
4.92
0.00
0.00
2.40
1437
1773
2.288579
ACCGCGTGTTGAGAGATTACAA
60.289
45.455
4.92
0.00
0.00
2.41
1439
1775
3.242518
CGCGTGTTGAGAGATTACAAGA
58.757
45.455
0.00
0.00
0.00
3.02
1441
1777
4.327357
CGCGTGTTGAGAGATTACAAGAAT
59.673
41.667
0.00
0.00
0.00
2.40
1442
1778
5.499334
CGCGTGTTGAGAGATTACAAGAATC
60.499
44.000
0.00
0.00
0.00
2.52
1443
1779
5.499334
GCGTGTTGAGAGATTACAAGAATCG
60.499
44.000
0.00
0.00
0.00
3.34
1444
1780
5.004821
CGTGTTGAGAGATTACAAGAATCGG
59.995
44.000
0.00
0.00
0.00
4.18
1445
1781
5.292101
GTGTTGAGAGATTACAAGAATCGGG
59.708
44.000
0.00
0.00
0.00
5.14
1446
1782
5.186992
TGTTGAGAGATTACAAGAATCGGGA
59.813
40.000
0.00
0.00
0.00
5.14
1448
1784
5.201243
TGAGAGATTACAAGAATCGGGAGA
58.799
41.667
0.00
0.00
46.90
3.71
1449
1785
5.656859
TGAGAGATTACAAGAATCGGGAGAA
59.343
40.000
0.00
0.00
45.37
2.87
1450
1786
6.325028
TGAGAGATTACAAGAATCGGGAGAAT
59.675
38.462
0.00
0.00
45.37
2.40
1451
1787
6.754193
AGAGATTACAAGAATCGGGAGAATC
58.246
40.000
0.00
0.00
45.37
2.52
1452
1788
5.533482
AGATTACAAGAATCGGGAGAATCG
58.467
41.667
0.00
0.00
43.47
3.34
1453
1789
4.730949
TTACAAGAATCGGGAGAATCGT
57.269
40.909
0.00
0.00
43.47
3.73
1456
1792
3.262420
CAAGAATCGGGAGAATCGTGTT
58.738
45.455
0.00
0.00
43.47
3.32
1457
1793
4.430007
CAAGAATCGGGAGAATCGTGTTA
58.570
43.478
0.00
0.00
43.47
2.41
1458
1794
4.043037
AGAATCGGGAGAATCGTGTTAC
57.957
45.455
0.00
0.00
43.47
2.50
1459
1795
3.446161
AGAATCGGGAGAATCGTGTTACA
59.554
43.478
0.00
0.00
43.47
2.41
1469
1805
6.035112
GGAGAATCGTGTTACAAGTTCTGATC
59.965
42.308
15.60
0.00
34.37
2.92
1476
1812
6.419710
CGTGTTACAAGTTCTGATCACAAGTA
59.580
38.462
0.00
0.00
0.00
2.24
1477
1813
7.116376
CGTGTTACAAGTTCTGATCACAAGTAT
59.884
37.037
0.00
0.00
0.00
2.12
1478
1814
8.223769
GTGTTACAAGTTCTGATCACAAGTATG
58.776
37.037
0.00
0.00
0.00
2.39
1479
1815
5.869753
ACAAGTTCTGATCACAAGTATGC
57.130
39.130
0.00
0.00
0.00
3.14
1480
1816
4.389992
ACAAGTTCTGATCACAAGTATGCG
59.610
41.667
0.00
0.00
0.00
4.73
1481
1817
3.525537
AGTTCTGATCACAAGTATGCGG
58.474
45.455
0.00
0.00
0.00
5.69
1482
1818
3.195610
AGTTCTGATCACAAGTATGCGGA
59.804
43.478
0.00
0.00
0.00
5.54
1483
1819
4.122776
GTTCTGATCACAAGTATGCGGAT
58.877
43.478
0.00
0.00
0.00
4.18
1484
1820
3.721035
TCTGATCACAAGTATGCGGATG
58.279
45.455
0.00
0.00
0.00
3.51
1485
1821
3.132824
TCTGATCACAAGTATGCGGATGT
59.867
43.478
0.00
0.00
0.00
3.06
1486
1822
3.872696
TGATCACAAGTATGCGGATGTT
58.127
40.909
0.00
0.00
0.00
2.71
1487
1823
3.871006
TGATCACAAGTATGCGGATGTTC
59.129
43.478
0.00
0.00
0.00
3.18
1700
2036
0.803768
CCGAGCACCTTGAGATGACG
60.804
60.000
0.00
0.00
0.00
4.35
2063
3788
1.827681
TGCTCTACGCTCAGAAGTCT
58.172
50.000
0.00
0.00
40.11
3.24
2066
3791
3.199677
GCTCTACGCTCAGAAGTCTCTA
58.800
50.000
0.00
0.00
35.14
2.43
2073
3798
3.311322
CGCTCAGAAGTCTCTACGAAGAT
59.689
47.826
0.00
0.00
0.00
2.40
2078
3803
5.098893
CAGAAGTCTCTACGAAGATTGGTG
58.901
45.833
0.00
0.00
0.00
4.17
2080
3805
4.974368
AGTCTCTACGAAGATTGGTGAG
57.026
45.455
0.00
0.00
0.00
3.51
2085
3810
3.945921
TCTACGAAGATTGGTGAGTCGAT
59.054
43.478
0.00
0.00
35.71
3.59
2090
3815
3.428746
AGATTGGTGAGTCGATTCGAG
57.571
47.619
9.42
0.00
36.23
4.04
2100
3825
0.530288
TCGATTCGAGCACATCACCA
59.470
50.000
4.29
0.00
0.00
4.17
2101
3826
0.647410
CGATTCGAGCACATCACCAC
59.353
55.000
0.00
0.00
0.00
4.16
2112
3850
2.738846
CACATCACCACACTCTTGCTAC
59.261
50.000
0.00
0.00
0.00
3.58
2113
3851
2.634940
ACATCACCACACTCTTGCTACT
59.365
45.455
0.00
0.00
0.00
2.57
2114
3852
3.832490
ACATCACCACACTCTTGCTACTA
59.168
43.478
0.00
0.00
0.00
1.82
2115
3853
3.936372
TCACCACACTCTTGCTACTAC
57.064
47.619
0.00
0.00
0.00
2.73
2126
3864
5.064962
ACTCTTGCTACTACTAGCTAACGTG
59.935
44.000
0.00
0.00
45.20
4.49
2128
3866
4.871993
TGCTACTACTAGCTAACGTGTC
57.128
45.455
0.00
0.00
45.20
3.67
2129
3867
4.511527
TGCTACTACTAGCTAACGTGTCT
58.488
43.478
0.00
0.00
45.20
3.41
2130
3868
4.331992
TGCTACTACTAGCTAACGTGTCTG
59.668
45.833
0.00
0.00
45.20
3.51
2131
3869
4.260702
GCTACTACTAGCTAACGTGTCTGG
60.261
50.000
0.00
0.00
42.11
3.86
2268
4008
2.303022
GAGGGAGAAGAACACCATGTCA
59.697
50.000
0.00
0.00
0.00
3.58
2457
4197
2.202987
GCGGTGCAGAGGATCCTG
60.203
66.667
22.02
7.96
33.66
3.86
2463
4203
3.554342
CAGAGGATCCTGGCCGGG
61.554
72.222
26.30
26.30
33.66
5.73
2723
4463
5.914033
CCTGAAGGTCCGTTCATTAGAATA
58.086
41.667
3.19
0.00
35.88
1.75
2727
4467
8.473358
TGAAGGTCCGTTCATTAGAATAGATA
57.527
34.615
0.00
0.00
35.92
1.98
2772
4512
3.614092
AGTGGATAGTGCTCAAATGTGG
58.386
45.455
0.00
0.00
0.00
4.17
2774
4514
3.375299
GTGGATAGTGCTCAAATGTGGTC
59.625
47.826
0.00
0.00
0.00
4.02
2836
4576
2.665185
AAGAAGGTGTGCGGCGTC
60.665
61.111
9.37
0.91
0.00
5.19
2920
4660
3.056458
CAGACGGTGGTGCAGGTA
58.944
61.111
0.00
0.00
0.00
3.08
3271
5032
4.767255
AAGAAGCTCGGGCGGCTG
62.767
66.667
12.43
12.43
44.37
4.85
3435
5204
5.902681
TGTACAGCTTTATAATCTGCGTCT
58.097
37.500
12.53
0.82
0.00
4.18
3455
5224
3.887110
TCTCAGTTCGTGTCAAGTTCCTA
59.113
43.478
0.00
0.00
0.00
2.94
3486
5255
2.875296
ACTCAGGCCATTGTAGCAAAA
58.125
42.857
5.01
0.00
0.00
2.44
3592
5365
1.587034
GCTCTACGATTACCACAACGC
59.413
52.381
0.00
0.00
0.00
4.84
3623
5396
3.243670
GGAAGCATCTGATGTCGATCTCA
60.244
47.826
18.19
0.00
0.00
3.27
3648
5421
1.420430
TCCTCTCCCGTTTCTTGTGT
58.580
50.000
0.00
0.00
0.00
3.72
3693
5468
0.604780
CTAGCAATGCATCCCCCTCG
60.605
60.000
8.35
0.00
0.00
4.63
3717
5500
0.745128
AAACGACAACCAGCACCGAA
60.745
50.000
0.00
0.00
0.00
4.30
3719
5502
0.534203
ACGACAACCAGCACCGAAAT
60.534
50.000
0.00
0.00
0.00
2.17
3729
5512
2.035626
ACCGAAATGTGGCCTGGG
59.964
61.111
3.32
0.00
0.00
4.45
3771
5554
3.240491
CCATATGGGCACGGGACT
58.760
61.111
14.52
0.00
0.00
3.85
3772
5555
1.227943
CCATATGGGCACGGGACTG
60.228
63.158
14.52
0.00
0.00
3.51
3778
5561
2.288025
GGGCACGGGACTGTCCTTA
61.288
63.158
25.01
0.00
36.57
2.69
3787
5570
3.547746
GGGACTGTCCTTACAACAAACA
58.452
45.455
25.01
0.00
36.57
2.83
3842
5625
9.500785
GATTTCCATTCTCCTATCCTAAGAAAG
57.499
37.037
0.00
0.00
33.10
2.62
3889
5672
0.615331
ATGGATCAGTCGGCAACACT
59.385
50.000
0.00
0.00
0.00
3.55
3890
5673
0.037326
TGGATCAGTCGGCAACACTC
60.037
55.000
0.00
0.00
0.00
3.51
3891
5674
0.037326
GGATCAGTCGGCAACACTCA
60.037
55.000
0.00
0.00
0.00
3.41
3895
5678
0.304705
CAGTCGGCAACACTCAACAC
59.695
55.000
0.00
0.00
0.00
3.32
3976
5759
4.156008
GGTTCAGGACATCAAGCGTTTTAT
59.844
41.667
0.00
0.00
0.00
1.40
3984
5767
3.060736
TCAAGCGTTTTATAGGGCACA
57.939
42.857
0.00
0.00
0.00
4.57
3985
5768
2.745281
TCAAGCGTTTTATAGGGCACAC
59.255
45.455
0.00
0.00
0.00
3.82
3987
5770
1.081094
GCGTTTTATAGGGCACACGT
58.919
50.000
0.00
0.00
0.00
4.49
4065
5849
7.502561
AGACAAGCCATTAATTACCTATTCCAC
59.497
37.037
0.00
0.00
0.00
4.02
4080
5864
6.602009
ACCTATTCCACTTTTTACATAGGTGC
59.398
38.462
7.70
0.00
43.16
5.01
4131
5915
2.008543
GCACATCAGCTTCCGATCACA
61.009
52.381
0.00
0.00
0.00
3.58
4161
5945
1.472376
GCTGTGCCACTCTATCCAGAC
60.472
57.143
0.00
0.00
0.00
3.51
4269
6054
1.984570
CAGGAAGGAGGGCGTGAGA
60.985
63.158
0.00
0.00
0.00
3.27
4428
6213
3.325870
CGTGATCTACCAAGAAACAGCA
58.674
45.455
0.00
0.00
34.73
4.41
4434
6219
6.660521
TGATCTACCAAGAAACAGCAATGATT
59.339
34.615
0.00
0.00
34.73
2.57
4435
6220
6.500684
TCTACCAAGAAACAGCAATGATTC
57.499
37.500
0.00
0.00
0.00
2.52
4436
6221
4.164822
ACCAAGAAACAGCAATGATTCG
57.835
40.909
0.00
0.00
0.00
3.34
4453
6238
5.939457
TGATTCGCTATATTAGACCTCACG
58.061
41.667
0.00
0.00
0.00
4.35
4465
6250
2.158957
AGACCTCACGCAGTCAAAAGAA
60.159
45.455
0.00
0.00
41.61
2.52
4467
6252
3.214328
ACCTCACGCAGTCAAAAGAAAT
58.786
40.909
0.00
0.00
41.61
2.17
4468
6253
3.003689
ACCTCACGCAGTCAAAAGAAATG
59.996
43.478
0.00
0.00
41.61
2.32
4469
6254
2.975851
CTCACGCAGTCAAAAGAAATGC
59.024
45.455
0.00
0.00
41.61
3.56
4470
6255
2.357323
TCACGCAGTCAAAAGAAATGCA
59.643
40.909
0.00
0.00
41.61
3.96
4471
6256
3.004629
TCACGCAGTCAAAAGAAATGCAT
59.995
39.130
0.00
0.00
41.61
3.96
4474
6259
5.401972
CACGCAGTCAAAAGAAATGCATTTA
59.598
36.000
24.15
5.31
41.61
1.40
4475
6260
6.089820
CACGCAGTCAAAAGAAATGCATTTAT
59.910
34.615
24.15
18.84
41.61
1.40
4476
6261
7.273164
CACGCAGTCAAAAGAAATGCATTTATA
59.727
33.333
24.15
3.79
41.61
0.98
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
67
76
1.006571
GTCGTCCAGAAACCGCAGA
60.007
57.895
0.00
0.00
0.00
4.26
98
107
4.229876
GTTTCTGTAAATTGCTGCCACTC
58.770
43.478
0.00
0.00
0.00
3.51
141
150
1.860950
CTGAATACCACCGATGAAGCG
59.139
52.381
0.00
0.00
0.00
4.68
258
267
3.827008
TCTATCACCACTGAGCAATCC
57.173
47.619
0.00
0.00
0.00
3.01
381
391
1.140816
GAGCTTCGACGTTTGAGCTT
58.859
50.000
17.68
6.04
32.34
3.74
387
397
2.755650
AGATTGTGAGCTTCGACGTTT
58.244
42.857
0.00
0.00
0.00
3.60
547
557
4.035102
AGAAACCCGGCCTCCAGC
62.035
66.667
0.00
0.00
42.60
4.85
548
558
2.045926
CAGAAACCCGGCCTCCAG
60.046
66.667
0.00
0.00
0.00
3.86
549
559
3.646715
CCAGAAACCCGGCCTCCA
61.647
66.667
0.00
0.00
0.00
3.86
550
560
4.426313
CCCAGAAACCCGGCCTCC
62.426
72.222
0.00
0.00
0.00
4.30
551
561
2.211468
ATTCCCAGAAACCCGGCCTC
62.211
60.000
0.00
0.00
0.00
4.70
552
562
2.211468
GATTCCCAGAAACCCGGCCT
62.211
60.000
0.00
0.00
0.00
5.19
553
563
1.753078
GATTCCCAGAAACCCGGCC
60.753
63.158
0.00
0.00
0.00
6.13
554
564
0.610785
TTGATTCCCAGAAACCCGGC
60.611
55.000
0.00
0.00
0.00
6.13
555
565
1.463674
CTTGATTCCCAGAAACCCGG
58.536
55.000
0.00
0.00
0.00
5.73
556
566
0.811281
GCTTGATTCCCAGAAACCCG
59.189
55.000
0.00
0.00
0.00
5.28
557
567
1.186200
GGCTTGATTCCCAGAAACCC
58.814
55.000
0.00
0.00
0.00
4.11
558
568
0.811281
CGGCTTGATTCCCAGAAACC
59.189
55.000
0.00
0.00
0.00
3.27
559
569
0.171231
GCGGCTTGATTCCCAGAAAC
59.829
55.000
0.00
0.00
0.00
2.78
560
570
0.038166
AGCGGCTTGATTCCCAGAAA
59.962
50.000
0.00
0.00
0.00
2.52
561
571
0.392998
GAGCGGCTTGATTCCCAGAA
60.393
55.000
2.97
0.00
0.00
3.02
562
572
1.221840
GAGCGGCTTGATTCCCAGA
59.778
57.895
2.97
0.00
0.00
3.86
563
573
1.094073
CAGAGCGGCTTGATTCCCAG
61.094
60.000
2.97
0.00
0.00
4.45
564
574
1.078214
CAGAGCGGCTTGATTCCCA
60.078
57.895
2.97
0.00
0.00
4.37
565
575
1.821332
CCAGAGCGGCTTGATTCCC
60.821
63.158
2.97
0.00
0.00
3.97
575
585
0.681564
ACTACTCAGGACCAGAGCGG
60.682
60.000
13.55
9.01
42.50
5.52
578
588
4.202367
ACCAAAAACTACTCAGGACCAGAG
60.202
45.833
12.15
12.15
39.04
3.35
580
590
4.065789
GACCAAAAACTACTCAGGACCAG
58.934
47.826
0.00
0.00
0.00
4.00
586
596
8.964476
ATATGTATGGACCAAAAACTACTCAG
57.036
34.615
0.00
0.00
0.00
3.35
653
664
4.588278
GGTCTCAGTGTTTTTGAGTTTCG
58.412
43.478
2.57
0.00
42.11
3.46
675
864
2.216750
CTGGGTTTCATTGGGCTGCG
62.217
60.000
0.00
0.00
0.00
5.18
711
900
6.633500
TTAACCACTGGAATCTTTGTCTTG
57.367
37.500
0.71
0.00
0.00
3.02
756
945
0.107508
AGCTTGTGTCGGCTATGCAT
60.108
50.000
3.79
3.79
37.00
3.96
762
951
0.886490
CTTGGAAGCTTGTGTCGGCT
60.886
55.000
2.10
0.00
40.85
5.52
781
970
0.678048
AGCAAGATGCCCTTCGGTTC
60.678
55.000
0.00
0.00
46.52
3.62
971
1237
4.891037
GGGGCAGCCAGAGCATCC
62.891
72.222
15.19
0.00
43.56
3.51
1029
1303
0.249657
CCCTTCTCACTATGCTCCGC
60.250
60.000
0.00
0.00
0.00
5.54
1031
1311
1.691434
CCTCCCTTCTCACTATGCTCC
59.309
57.143
0.00
0.00
0.00
4.70
1034
1314
2.627699
CTCTCCTCCCTTCTCACTATGC
59.372
54.545
0.00
0.00
0.00
3.14
1040
1320
0.633921
CCCTCTCTCCTCCCTTCTCA
59.366
60.000
0.00
0.00
0.00
3.27
1043
1323
2.131067
CGCCCTCTCTCCTCCCTTC
61.131
68.421
0.00
0.00
0.00
3.46
1044
1324
2.042435
CGCCCTCTCTCCTCCCTT
60.042
66.667
0.00
0.00
0.00
3.95
1045
1325
4.150454
CCGCCCTCTCTCCTCCCT
62.150
72.222
0.00
0.00
0.00
4.20
1063
1350
2.724708
GAGCACTCACGCAAGCTCG
61.725
63.158
0.00
0.00
43.27
5.03
1184
1471
0.038343
TTTCATGGCGCCAAAGAAGC
60.038
50.000
36.33
0.00
0.00
3.86
1185
1472
1.270550
AGTTTCATGGCGCCAAAGAAG
59.729
47.619
36.33
20.29
0.00
2.85
1209
1496
2.176055
CGCTGCTGCTTGCTTGAG
59.824
61.111
14.03
0.00
43.37
3.02
1241
1531
6.698329
TGTCATTCCACGTATAAAATACGGAG
59.302
38.462
20.00
13.14
44.38
4.63
1242
1532
6.571605
TGTCATTCCACGTATAAAATACGGA
58.428
36.000
20.00
8.70
44.38
4.69
1243
1533
6.831727
TGTCATTCCACGTATAAAATACGG
57.168
37.500
20.00
10.94
44.38
4.02
1244
1534
9.188588
AGTATGTCATTCCACGTATAAAATACG
57.811
33.333
15.77
15.77
45.44
3.06
1247
1537
9.607988
TTCAGTATGTCATTCCACGTATAAAAT
57.392
29.630
0.00
0.00
37.40
1.82
1255
1545
3.618594
CAGGTTCAGTATGTCATTCCACG
59.381
47.826
0.00
0.00
37.40
4.94
1263
1556
6.092807
GGATGAAACTTCAGGTTCAGTATGTC
59.907
42.308
12.69
5.28
41.08
3.06
1294
1587
4.190772
CTGCACCAACCAGTTGAAATTTT
58.809
39.130
12.06
0.00
42.93
1.82
1295
1588
3.432046
CCTGCACCAACCAGTTGAAATTT
60.432
43.478
12.06
0.00
42.93
1.82
1297
1590
1.688197
CCTGCACCAACCAGTTGAAAT
59.312
47.619
12.06
0.00
42.93
2.17
1398
1727
1.616865
GGTGGAAAGTAAAGTTGGGGC
59.383
52.381
0.00
0.00
0.00
5.80
1409
1743
1.153329
TCAACACGCGGTGGAAAGT
60.153
52.632
12.47
0.00
37.94
2.66
1410
1744
0.878523
TCTCAACACGCGGTGGAAAG
60.879
55.000
12.47
0.26
37.94
2.62
1413
1747
1.532604
ATCTCTCAACACGCGGTGGA
61.533
55.000
12.47
7.87
37.94
4.02
1414
1748
0.670546
AATCTCTCAACACGCGGTGG
60.671
55.000
12.47
3.09
37.94
4.61
1415
1749
1.654105
GTAATCTCTCAACACGCGGTG
59.346
52.381
12.47
9.20
39.75
4.94
1422
1756
5.186992
TCCCGATTCTTGTAATCTCTCAACA
59.813
40.000
0.00
0.00
0.00
3.33
1424
1760
5.656859
TCTCCCGATTCTTGTAATCTCTCAA
59.343
40.000
0.00
0.00
0.00
3.02
1426
1762
5.776173
TCTCCCGATTCTTGTAATCTCTC
57.224
43.478
0.00
0.00
0.00
3.20
1430
1766
5.175856
CACGATTCTCCCGATTCTTGTAATC
59.824
44.000
0.00
0.00
0.00
1.75
1433
1769
3.446161
ACACGATTCTCCCGATTCTTGTA
59.554
43.478
0.00
0.00
33.19
2.41
1437
1773
3.446161
TGTAACACGATTCTCCCGATTCT
59.554
43.478
0.00
0.00
0.00
2.40
1439
1775
3.880047
TGTAACACGATTCTCCCGATT
57.120
42.857
0.00
0.00
0.00
3.34
1441
1777
2.559668
ACTTGTAACACGATTCTCCCGA
59.440
45.455
0.00
0.00
0.00
5.14
1442
1778
2.955614
ACTTGTAACACGATTCTCCCG
58.044
47.619
0.00
0.00
0.00
5.14
1443
1779
4.389077
CAGAACTTGTAACACGATTCTCCC
59.611
45.833
0.00
0.00
0.00
4.30
1444
1780
5.227908
TCAGAACTTGTAACACGATTCTCC
58.772
41.667
0.00
0.00
0.00
3.71
1445
1781
6.586463
TGATCAGAACTTGTAACACGATTCTC
59.414
38.462
0.00
0.00
0.00
2.87
1446
1782
6.366332
GTGATCAGAACTTGTAACACGATTCT
59.634
38.462
0.00
0.00
0.00
2.40
1448
1784
5.989168
TGTGATCAGAACTTGTAACACGATT
59.011
36.000
0.00
0.00
32.55
3.34
1449
1785
5.538118
TGTGATCAGAACTTGTAACACGAT
58.462
37.500
0.00
0.00
32.55
3.73
1450
1786
4.939271
TGTGATCAGAACTTGTAACACGA
58.061
39.130
0.00
0.00
32.55
4.35
1451
1787
5.234329
ACTTGTGATCAGAACTTGTAACACG
59.766
40.000
0.23
0.00
32.55
4.49
1452
1788
6.604735
ACTTGTGATCAGAACTTGTAACAC
57.395
37.500
0.23
0.00
0.00
3.32
1453
1789
7.095229
GCATACTTGTGATCAGAACTTGTAACA
60.095
37.037
0.23
0.00
0.00
2.41
1454
1790
7.237173
GCATACTTGTGATCAGAACTTGTAAC
58.763
38.462
0.23
0.00
0.00
2.50
1456
1792
5.576774
CGCATACTTGTGATCAGAACTTGTA
59.423
40.000
0.23
3.68
35.26
2.41
1457
1793
4.389992
CGCATACTTGTGATCAGAACTTGT
59.610
41.667
0.23
1.44
35.26
3.16
1458
1794
4.201753
CCGCATACTTGTGATCAGAACTTG
60.202
45.833
0.23
1.41
35.26
3.16
1459
1795
3.935203
CCGCATACTTGTGATCAGAACTT
59.065
43.478
0.23
0.00
35.26
2.66
1469
1805
2.352651
CAGGAACATCCGCATACTTGTG
59.647
50.000
0.00
0.00
42.75
3.33
1476
1812
2.117156
GCTGCAGGAACATCCGCAT
61.117
57.895
17.12
0.00
42.10
4.73
1477
1813
2.747460
GCTGCAGGAACATCCGCA
60.747
61.111
17.12
12.77
42.75
5.69
1478
1814
2.437359
AGCTGCAGGAACATCCGC
60.437
61.111
17.12
0.00
42.75
5.54
1479
1815
1.817099
GGAGCTGCAGGAACATCCG
60.817
63.158
17.12
0.00
42.75
4.18
1480
1816
1.452833
GGGAGCTGCAGGAACATCC
60.453
63.158
17.12
7.61
36.58
3.51
1481
1817
1.028868
GTGGGAGCTGCAGGAACATC
61.029
60.000
17.12
0.00
0.00
3.06
1482
1818
1.001641
GTGGGAGCTGCAGGAACAT
60.002
57.895
17.12
0.00
0.00
2.71
1483
1819
2.149383
AGTGGGAGCTGCAGGAACA
61.149
57.895
17.12
0.00
0.00
3.18
1484
1820
1.673665
CAGTGGGAGCTGCAGGAAC
60.674
63.158
17.12
0.00
0.00
3.62
1485
1821
2.752358
CAGTGGGAGCTGCAGGAA
59.248
61.111
17.12
0.00
0.00
3.36
1486
1822
3.324930
CCAGTGGGAGCTGCAGGA
61.325
66.667
17.12
0.00
35.28
3.86
1568
1904
2.592861
GGCATGCCCGTGATCTCC
60.593
66.667
27.24
0.00
0.00
3.71
1691
2027
0.611896
TGCACTCCTCCGTCATCTCA
60.612
55.000
0.00
0.00
0.00
3.27
1700
2036
4.785453
CCGGGCTTGCACTCCTCC
62.785
72.222
0.00
0.00
0.00
4.30
2063
3788
3.340928
TCGACTCACCAATCTTCGTAGA
58.659
45.455
0.00
0.00
34.21
2.59
2066
3791
3.512680
GAATCGACTCACCAATCTTCGT
58.487
45.455
0.00
0.00
0.00
3.85
2073
3798
0.601057
TGCTCGAATCGACTCACCAA
59.399
50.000
0.00
0.00
0.00
3.67
2078
3803
1.849219
GTGATGTGCTCGAATCGACTC
59.151
52.381
0.00
0.00
0.00
3.36
2080
3805
0.924090
GGTGATGTGCTCGAATCGAC
59.076
55.000
0.00
0.00
0.00
4.20
2085
3810
0.392706
AGTGTGGTGATGTGCTCGAA
59.607
50.000
0.00
0.00
0.00
3.71
2090
3815
0.239347
GCAAGAGTGTGGTGATGTGC
59.761
55.000
0.00
0.00
0.00
4.57
2112
3850
2.422479
TGCCAGACACGTTAGCTAGTAG
59.578
50.000
0.00
0.00
0.00
2.57
2113
3851
2.163010
GTGCCAGACACGTTAGCTAGTA
59.837
50.000
0.00
0.00
40.07
1.82
2114
3852
1.067776
GTGCCAGACACGTTAGCTAGT
60.068
52.381
0.00
0.00
40.07
2.57
2115
3853
1.630148
GTGCCAGACACGTTAGCTAG
58.370
55.000
0.00
0.00
40.07
3.42
2126
3864
0.249489
ACAAGTCGACAGTGCCAGAC
60.249
55.000
19.50
5.41
0.00
3.51
2128
3866
1.792949
GTTACAAGTCGACAGTGCCAG
59.207
52.381
19.50
1.58
0.00
4.85
2129
3867
1.411246
AGTTACAAGTCGACAGTGCCA
59.589
47.619
19.50
4.39
0.00
4.92
2130
3868
2.150397
AGTTACAAGTCGACAGTGCC
57.850
50.000
19.50
10.29
0.00
5.01
2131
3869
2.864343
ACAAGTTACAAGTCGACAGTGC
59.136
45.455
19.50
12.47
0.00
4.40
2268
4008
0.108424
GCATCGACAGGAAGCTCACT
60.108
55.000
0.00
0.00
36.46
3.41
2457
4197
2.686106
TTCTCCAGGTACCCGGCC
60.686
66.667
9.56
0.00
0.00
6.13
2463
4203
1.516423
GCCCTCGTTCTCCAGGTAC
59.484
63.158
0.00
0.00
0.00
3.34
2469
4209
4.516195
GCCTCGCCCTCGTTCTCC
62.516
72.222
0.00
0.00
36.96
3.71
2772
4512
2.700773
GCCTGCCCAAACCATCGAC
61.701
63.158
0.00
0.00
0.00
4.20
2774
4514
3.814268
CGCCTGCCCAAACCATCG
61.814
66.667
0.00
0.00
0.00
3.84
2836
4576
0.322277
ACAGCTTCTGGCAGTCCATG
60.322
55.000
15.27
11.89
42.51
3.66
2920
4660
2.258591
CGCTGCTCGTGGTACAGT
59.741
61.111
0.00
0.00
41.80
3.55
3011
4751
4.487412
CTCCCGCCCGTACGACAC
62.487
72.222
18.76
4.39
34.06
3.67
3435
5204
3.382227
TGTAGGAACTTGACACGAACTGA
59.618
43.478
0.00
0.00
41.75
3.41
3455
5224
3.228188
TGGCCTGAGTTTCTTCATTGT
57.772
42.857
3.32
0.00
0.00
2.71
3486
5255
1.613437
CTGAACCCCGAGTTGCAAAAT
59.387
47.619
0.00
0.00
39.40
1.82
3623
5396
1.104630
GAAACGGGAGAGGATCGTCT
58.895
55.000
17.54
17.54
42.67
4.18
3648
5421
1.374560
CAACGTTATCGCAATCCCCA
58.625
50.000
0.00
0.00
41.18
4.96
3693
5468
1.098712
TGCTGGTTGTCGTTTGTCCC
61.099
55.000
0.00
0.00
0.00
4.46
3717
5500
1.266867
GCCAAATCCCAGGCCACATT
61.267
55.000
5.01
0.00
45.18
2.71
3719
5502
2.283821
GCCAAATCCCAGGCCACA
60.284
61.111
5.01
0.00
45.18
4.17
3729
5512
3.487372
GGTTATCTACCAGGGCCAAATC
58.513
50.000
6.18
0.00
46.92
2.17
3771
5554
4.097286
GCCTCTTTGTTTGTTGTAAGGACA
59.903
41.667
0.00
0.00
0.00
4.02
3772
5555
4.607955
GCCTCTTTGTTTGTTGTAAGGAC
58.392
43.478
0.00
0.00
0.00
3.85
3778
5561
3.859411
TTTCGCCTCTTTGTTTGTTGT
57.141
38.095
0.00
0.00
0.00
3.32
3787
5570
3.149981
CTCCTTTCCTTTTCGCCTCTTT
58.850
45.455
0.00
0.00
0.00
2.52
3889
5672
1.813178
CAGAGAGCCTAGACGTGTTGA
59.187
52.381
0.00
0.00
0.00
3.18
3890
5673
1.542030
ACAGAGAGCCTAGACGTGTTG
59.458
52.381
0.00
0.00
0.00
3.33
3891
5674
1.912417
ACAGAGAGCCTAGACGTGTT
58.088
50.000
0.00
0.00
0.00
3.32
3895
5678
1.950216
TGCATACAGAGAGCCTAGACG
59.050
52.381
0.00
0.00
0.00
4.18
3984
5767
0.535102
CTTTTGACCCAGGCAGACGT
60.535
55.000
0.00
0.00
0.00
4.34
3985
5768
0.250295
TCTTTTGACCCAGGCAGACG
60.250
55.000
0.00
0.00
0.00
4.18
3987
5770
2.555227
GGATTCTTTTGACCCAGGCAGA
60.555
50.000
0.00
0.00
0.00
4.26
4080
5864
5.220624
GGAGACACACACGTATCTAGTACTG
60.221
48.000
5.39
0.00
0.00
2.74
4131
5915
0.734889
GTGGCACAGCTAATCGCATT
59.265
50.000
13.86
0.00
41.80
3.56
4161
5945
1.325338
CCCAATTACGGTTTAGCGACG
59.675
52.381
8.45
0.00
0.00
5.12
4362
6147
4.794439
TCGTCGGCAGGCATCACG
62.794
66.667
4.23
4.23
0.00
4.35
4428
6213
7.030165
CGTGAGGTCTAATATAGCGAATCATT
58.970
38.462
0.00
0.00
0.00
2.57
4434
6219
3.143728
TGCGTGAGGTCTAATATAGCGA
58.856
45.455
0.00
0.00
0.00
4.93
4435
6220
3.058155
ACTGCGTGAGGTCTAATATAGCG
60.058
47.826
0.00
0.00
0.00
4.26
4436
6221
4.023107
TGACTGCGTGAGGTCTAATATAGC
60.023
45.833
0.00
0.00
34.01
2.97
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.