Multiple sequence alignment - TraesCS4B01G255300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G255300 chr4B 100.000 3534 0 0 1 3534 520236346 520239879 0.000000e+00 6527.0
1 TraesCS4B01G255300 chr4B 84.597 1662 176 43 912 2521 520228770 520230403 0.000000e+00 1578.0
2 TraesCS4B01G255300 chr4B 87.239 431 31 15 193 619 520228179 520228589 1.490000e-128 470.0
3 TraesCS4B01G255300 chr4B 84.898 245 13 8 2571 2797 520230505 520230743 3.550000e-55 226.0
4 TraesCS4B01G255300 chr4A 92.034 1431 99 6 1097 2521 40437293 40435872 0.000000e+00 1997.0
5 TraesCS4B01G255300 chr4A 92.410 751 41 7 1097 1840 40413758 40413017 0.000000e+00 1057.0
6 TraesCS4B01G255300 chr4A 94.675 676 25 3 2571 3241 40435774 40435105 0.000000e+00 1038.0
7 TraesCS4B01G255300 chr4A 93.775 498 22 3 184 674 40414549 40414054 0.000000e+00 739.0
8 TraesCS4B01G255300 chr4A 93.788 499 20 5 184 674 40493355 40492860 0.000000e+00 739.0
9 TraesCS4B01G255300 chr4A 89.771 567 57 1 1953 2519 40413027 40412462 0.000000e+00 725.0
10 TraesCS4B01G255300 chr4A 94.681 470 16 3 212 674 40438053 40437586 0.000000e+00 721.0
11 TraesCS4B01G255300 chr4A 93.970 199 10 2 476 674 40495043 40495239 2.060000e-77 300.0
12 TraesCS4B01G255300 chr4A 94.301 193 10 1 906 1098 40413987 40413796 9.590000e-76 294.0
13 TraesCS4B01G255300 chr4A 94.301 193 10 1 906 1098 40437522 40437331 9.590000e-76 294.0
14 TraesCS4B01G255300 chr4A 94.301 193 10 1 906 1098 40492796 40492605 9.590000e-76 294.0
15 TraesCS4B01G255300 chr4A 94.301 193 10 1 906 1098 40495306 40495497 9.590000e-76 294.0
16 TraesCS4B01G255300 chr4A 95.699 93 4 0 3234 3326 40285565 40285473 2.200000e-32 150.0
17 TraesCS4B01G255300 chr4A 97.701 87 2 0 754 840 40414058 40413972 2.200000e-32 150.0
18 TraesCS4B01G255300 chr4A 97.701 87 2 0 754 840 40495235 40495321 2.200000e-32 150.0
19 TraesCS4B01G255300 chr4A 95.699 93 3 1 3439 3531 40284371 40284280 7.900000e-32 148.0
20 TraesCS4B01G255300 chr4A 86.014 143 13 2 1097 1234 40492567 40492427 2.840000e-31 147.0
21 TraesCS4B01G255300 chr4A 86.014 143 13 2 1097 1234 40495535 40495675 2.840000e-31 147.0
22 TraesCS4B01G255300 chr4A 94.253 87 2 1 754 840 40492864 40492781 2.860000e-26 130.0
23 TraesCS4B01G255300 chr4A 93.103 87 3 1 754 840 40437590 40437507 1.330000e-24 124.0
24 TraesCS4B01G255300 chr4A 96.491 57 2 0 840 896 497859167 497859111 1.040000e-15 95.3
25 TraesCS4B01G255300 chr4D 91.289 1435 104 8 1096 2521 423906477 423907899 0.000000e+00 1938.0
26 TraesCS4B01G255300 chr4D 94.413 698 27 3 2571 3268 423908005 423908690 0.000000e+00 1062.0
27 TraesCS4B01G255300 chr4D 88.443 848 48 16 1 840 423905458 423906263 0.000000e+00 977.0
28 TraesCS4B01G255300 chr4D 88.617 694 73 5 1831 2521 423880697 423881387 0.000000e+00 839.0
29 TraesCS4B01G255300 chr4D 86.544 706 59 9 1119 1798 423880002 423880697 0.000000e+00 745.0
30 TraesCS4B01G255300 chr4D 86.744 430 36 9 193 619 423879171 423879582 3.210000e-125 459.0
31 TraesCS4B01G255300 chr4D 95.361 194 7 2 906 1098 423906248 423906440 1.230000e-79 307.0
32 TraesCS4B01G255300 chr4D 95.035 141 6 1 3268 3407 423944569 423944709 1.650000e-53 220.0
33 TraesCS4B01G255300 chr4D 88.679 159 4 5 2571 2715 423881485 423881643 7.790000e-42 182.0
34 TraesCS4B01G255300 chr4D 96.040 101 4 0 3405 3505 423945166 423945266 7.850000e-37 165.0
35 TraesCS4B01G255300 chr4D 98.276 58 1 0 839 896 506541878 506541821 6.240000e-18 102.0
36 TraesCS4B01G255300 chr4D 98.246 57 1 0 840 896 393848501 393848445 2.240000e-17 100.0
37 TraesCS4B01G255300 chr4D 97.059 34 1 0 2754 2787 423881662 423881695 1.370000e-04 58.4
38 TraesCS4B01G255300 chr1A 75.737 441 95 8 1323 1761 564345839 564345409 9.940000e-51 211.0
39 TraesCS4B01G255300 chr1A 75.656 419 90 7 1346 1761 564573415 564573824 7.740000e-47 198.0
40 TraesCS4B01G255300 chr1A 73.703 559 118 24 1323 1868 564373451 564372909 1.290000e-44 191.0
41 TraesCS4B01G255300 chr1A 96.491 57 2 0 840 896 555306655 555306599 1.040000e-15 95.3
42 TraesCS4B01G255300 chr1A 90.741 54 2 3 3238 3289 68456826 68456878 6.330000e-08 69.4
43 TraesCS4B01G255300 chr1B 75.336 446 88 16 1323 1761 653938868 653938438 1.000000e-45 195.0
44 TraesCS4B01G255300 chr7B 96.667 60 2 0 838 897 33896386 33896445 2.240000e-17 100.0
45 TraesCS4B01G255300 chr1D 93.939 66 2 2 833 897 79819066 79819130 8.070000e-17 99.0
46 TraesCS4B01G255300 chr6A 96.491 57 2 0 840 896 27062705 27062761 1.040000e-15 95.3
47 TraesCS4B01G255300 chr2B 96.491 57 2 0 840 896 245790073 245790017 1.040000e-15 95.3
48 TraesCS4B01G255300 chr2B 96.491 57 2 0 840 896 799115715 799115771 1.040000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G255300 chr4B 520236346 520239879 3533 False 6527.00 6527 100.0000 1 3534 1 chr4B.!!$F1 3533
1 TraesCS4B01G255300 chr4B 520228179 520230743 2564 False 758.00 1578 85.5780 193 2797 3 chr4B.!!$F2 2604
2 TraesCS4B01G255300 chr4A 40435105 40438053 2948 True 834.80 1997 93.7588 212 3241 5 chr4A.!!$R4 3029
3 TraesCS4B01G255300 chr4A 40412462 40414549 2087 True 593.00 1057 93.5916 184 2519 5 chr4A.!!$R3 2335
4 TraesCS4B01G255300 chr4A 40492427 40493355 928 True 327.50 739 92.0890 184 1234 4 chr4A.!!$R5 1050
5 TraesCS4B01G255300 chr4A 40495043 40495675 632 False 222.75 300 92.9965 476 1234 4 chr4A.!!$F1 758
6 TraesCS4B01G255300 chr4D 423905458 423908690 3232 False 1071.00 1938 92.3765 1 3268 4 chr4D.!!$F2 3267
7 TraesCS4B01G255300 chr4D 423879171 423881695 2524 False 456.68 839 89.5286 193 2787 5 chr4D.!!$F1 2594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 166 0.043183 TCCAGCTTCATCTCCTCCCA 59.957 55.0 0.0 0.0 0.00 4.37 F
883 923 0.106335 CGGCCTCTGCATCTCTTGAT 59.894 55.0 0.0 0.0 40.13 2.57 F
903 943 0.179020 GCACACAGCCATAGCCCATA 60.179 55.0 0.0 0.0 41.25 2.74 F
1846 1967 0.457035 GCACATCATGGTCGGCAAAT 59.543 50.0 0.0 0.0 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 2265 0.179189 GAAGATTGGCCGAAGCAACG 60.179 55.0 0.00 0.0 42.56 4.10 R
2176 2297 0.107456 CCTCCTCTGGCAATGCGTAT 59.893 55.0 0.00 0.0 0.00 3.06 R
2313 2434 0.889994 GTCACATTGCCAGGAATGCA 59.110 50.0 11.30 0.0 36.89 3.96 R
3469 3688 0.183492 GCATGCTGTGAAGGGGGATA 59.817 55.0 11.37 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.562640 GGAAATAAATGTCCGAACTTTCAAC 57.437 36.000 0.00 0.00 0.00 3.18
45 46 1.416401 TCCGAACTTTCAACAGCTCCT 59.584 47.619 0.00 0.00 0.00 3.69
46 47 2.158813 TCCGAACTTTCAACAGCTCCTT 60.159 45.455 0.00 0.00 0.00 3.36
83 85 3.173953 TGTGGGATTTGAGAGGCATTT 57.826 42.857 0.00 0.00 0.00 2.32
85 87 4.671831 TGTGGGATTTGAGAGGCATTTTA 58.328 39.130 0.00 0.00 0.00 1.52
111 113 3.364889 TTGATTACGGTAGCATCGGAG 57.635 47.619 0.00 0.00 0.00 4.63
127 129 1.414181 CGGAGCTCTCTCTCTCTCTCT 59.586 57.143 14.64 0.00 39.31 3.10
128 130 2.546795 CGGAGCTCTCTCTCTCTCTCTC 60.547 59.091 14.64 0.00 39.31 3.20
130 132 1.771255 AGCTCTCTCTCTCTCTCTCCC 59.229 57.143 0.00 0.00 0.00 4.30
131 133 1.202818 GCTCTCTCTCTCTCTCTCCCC 60.203 61.905 0.00 0.00 0.00 4.81
132 134 2.126882 CTCTCTCTCTCTCTCTCCCCA 58.873 57.143 0.00 0.00 0.00 4.96
147 150 1.079256 CCCAGTCCTCACTCCTCCA 59.921 63.158 0.00 0.00 0.00 3.86
149 152 1.612395 CCAGTCCTCACTCCTCCAGC 61.612 65.000 0.00 0.00 0.00 4.85
161 164 0.758123 CCTCCAGCTTCATCTCCTCC 59.242 60.000 0.00 0.00 0.00 4.30
162 165 0.758123 CTCCAGCTTCATCTCCTCCC 59.242 60.000 0.00 0.00 0.00 4.30
163 166 0.043183 TCCAGCTTCATCTCCTCCCA 59.957 55.000 0.00 0.00 0.00 4.37
164 167 0.179936 CCAGCTTCATCTCCTCCCAC 59.820 60.000 0.00 0.00 0.00 4.61
165 168 0.179936 CAGCTTCATCTCCTCCCACC 59.820 60.000 0.00 0.00 0.00 4.61
166 169 0.985490 AGCTTCATCTCCTCCCACCC 60.985 60.000 0.00 0.00 0.00 4.61
167 170 1.988982 GCTTCATCTCCTCCCACCCC 61.989 65.000 0.00 0.00 0.00 4.95
168 171 1.307866 TTCATCTCCTCCCACCCCC 60.308 63.158 0.00 0.00 0.00 5.40
169 172 2.042762 CATCTCCTCCCACCCCCA 59.957 66.667 0.00 0.00 0.00 4.96
170 173 2.042930 ATCTCCTCCCACCCCCAC 59.957 66.667 0.00 0.00 0.00 4.61
171 174 3.660092 ATCTCCTCCCACCCCCACC 62.660 68.421 0.00 0.00 0.00 4.61
172 175 4.354943 CTCCTCCCACCCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
173 176 4.348495 TCCTCCCACCCCCACCTC 62.348 72.222 0.00 0.00 0.00 3.85
175 178 4.675303 CTCCCACCCCCACCTCCA 62.675 72.222 0.00 0.00 0.00 3.86
176 179 4.209620 TCCCACCCCCACCTCCAA 62.210 66.667 0.00 0.00 0.00 3.53
177 180 3.661648 CCCACCCCCACCTCCAAG 61.662 72.222 0.00 0.00 0.00 3.61
178 181 2.531685 CCACCCCCACCTCCAAGA 60.532 66.667 0.00 0.00 0.00 3.02
179 182 2.160171 CCACCCCCACCTCCAAGAA 61.160 63.158 0.00 0.00 0.00 2.52
180 183 1.380302 CACCCCCACCTCCAAGAAG 59.620 63.158 0.00 0.00 0.00 2.85
181 184 1.133809 CACCCCCACCTCCAAGAAGA 61.134 60.000 0.00 0.00 0.00 2.87
182 185 1.134438 ACCCCCACCTCCAAGAAGAC 61.134 60.000 0.00 0.00 0.00 3.01
190 193 2.370189 ACCTCCAAGAAGACAACCTCAG 59.630 50.000 0.00 0.00 0.00 3.35
394 404 5.735638 GCACCGTCCCTACTTAGATAACTTC 60.736 48.000 0.00 0.00 0.00 3.01
474 493 1.535015 CGGGTCGAGCAGATTCTCTTC 60.535 57.143 17.59 0.00 0.00 2.87
493 512 2.740055 CCGGTGTGCTGCTCTGAC 60.740 66.667 0.00 0.00 0.00 3.51
516 535 2.742372 CTTCCCCGTGCCAACTCG 60.742 66.667 0.00 0.00 0.00 4.18
653 674 5.707242 TTCTCTATACATCTAACCCTGCG 57.293 43.478 0.00 0.00 0.00 5.18
694 715 2.224426 ACTTCCGGAGTGTGTGCAATTA 60.224 45.455 3.34 0.00 37.17 1.40
695 716 2.093306 TCCGGAGTGTGTGCAATTAG 57.907 50.000 0.00 0.00 0.00 1.73
840 880 5.637810 CGTGTTTGGAGTGAGTGTATACATT 59.362 40.000 9.18 4.43 0.00 2.71
841 881 6.147164 CGTGTTTGGAGTGAGTGTATACATTT 59.853 38.462 9.18 0.46 0.00 2.32
842 882 7.307751 CGTGTTTGGAGTGAGTGTATACATTTT 60.308 37.037 9.18 0.00 0.00 1.82
843 883 8.349983 GTGTTTGGAGTGAGTGTATACATTTTT 58.650 33.333 9.18 0.00 0.00 1.94
862 902 4.482952 TTTTCGAGAAGGAGGAATACCC 57.517 45.455 0.00 0.00 36.73 3.69
863 903 2.083628 TCGAGAAGGAGGAATACCCC 57.916 55.000 0.00 0.00 36.73 4.95
864 904 1.049402 CGAGAAGGAGGAATACCCCC 58.951 60.000 0.00 0.00 36.73 5.40
865 905 1.049402 GAGAAGGAGGAATACCCCCG 58.951 60.000 0.00 0.00 36.73 5.73
866 906 0.400093 AGAAGGAGGAATACCCCCGG 60.400 60.000 0.00 0.00 36.73 5.73
867 907 2.053259 GAAGGAGGAATACCCCCGGC 62.053 65.000 0.00 0.00 36.73 6.13
868 908 3.567209 GGAGGAATACCCCCGGCC 61.567 72.222 0.00 0.00 36.73 6.13
869 909 2.447959 GAGGAATACCCCCGGCCT 60.448 66.667 0.00 0.00 36.73 5.19
870 910 2.447959 AGGAATACCCCCGGCCTC 60.448 66.667 0.00 0.00 36.73 4.70
871 911 2.447959 GGAATACCCCCGGCCTCT 60.448 66.667 0.00 0.00 0.00 3.69
872 912 2.819284 GGAATACCCCCGGCCTCTG 61.819 68.421 0.00 0.00 0.00 3.35
873 913 3.477578 GAATACCCCCGGCCTCTGC 62.478 68.421 0.00 0.00 0.00 4.26
874 914 4.815973 ATACCCCCGGCCTCTGCA 62.816 66.667 0.00 0.00 40.13 4.41
875 915 4.815973 TACCCCCGGCCTCTGCAT 62.816 66.667 0.00 0.00 40.13 3.96
878 918 4.247380 CCCCGGCCTCTGCATCTC 62.247 72.222 0.00 0.00 40.13 2.75
879 919 3.160047 CCCGGCCTCTGCATCTCT 61.160 66.667 0.00 0.00 40.13 3.10
880 920 2.739996 CCCGGCCTCTGCATCTCTT 61.740 63.158 0.00 0.00 40.13 2.85
881 921 1.523258 CCGGCCTCTGCATCTCTTG 60.523 63.158 0.00 0.00 40.13 3.02
882 922 1.519246 CGGCCTCTGCATCTCTTGA 59.481 57.895 0.00 0.00 40.13 3.02
883 923 0.106335 CGGCCTCTGCATCTCTTGAT 59.894 55.000 0.00 0.00 40.13 2.57
892 932 2.826979 CATCTCTTGATGCACACAGC 57.173 50.000 0.00 0.00 42.83 4.40
893 933 1.400846 CATCTCTTGATGCACACAGCC 59.599 52.381 0.00 0.00 42.83 4.85
894 934 0.397564 TCTCTTGATGCACACAGCCA 59.602 50.000 0.00 0.00 44.83 4.75
895 935 1.003928 TCTCTTGATGCACACAGCCAT 59.996 47.619 0.00 0.00 44.83 4.40
896 936 2.236893 TCTCTTGATGCACACAGCCATA 59.763 45.455 0.00 0.00 44.83 2.74
897 937 2.612672 CTCTTGATGCACACAGCCATAG 59.387 50.000 0.00 0.00 44.83 2.23
898 938 1.065102 CTTGATGCACACAGCCATAGC 59.935 52.381 0.00 0.00 44.83 2.97
899 939 0.749091 TGATGCACACAGCCATAGCC 60.749 55.000 0.00 0.00 44.83 3.93
900 940 1.450531 GATGCACACAGCCATAGCCC 61.451 60.000 0.00 0.00 44.83 5.19
901 941 2.045045 GCACACAGCCATAGCCCA 60.045 61.111 0.00 0.00 41.25 5.36
902 942 1.454479 GCACACAGCCATAGCCCAT 60.454 57.895 0.00 0.00 41.25 4.00
903 943 0.179020 GCACACAGCCATAGCCCATA 60.179 55.000 0.00 0.00 41.25 2.74
904 944 1.750332 GCACACAGCCATAGCCCATAA 60.750 52.381 0.00 0.00 41.25 1.90
905 945 2.224606 CACACAGCCATAGCCCATAAG 58.775 52.381 0.00 0.00 41.25 1.73
906 946 2.126882 ACACAGCCATAGCCCATAAGA 58.873 47.619 0.00 0.00 41.25 2.10
907 947 2.105477 ACACAGCCATAGCCCATAAGAG 59.895 50.000 0.00 0.00 41.25 2.85
908 948 2.105477 CACAGCCATAGCCCATAAGAGT 59.895 50.000 0.00 0.00 41.25 3.24
909 949 2.105477 ACAGCCATAGCCCATAAGAGTG 59.895 50.000 0.00 0.00 41.25 3.51
910 950 2.369860 CAGCCATAGCCCATAAGAGTGA 59.630 50.000 0.00 0.00 41.25 3.41
911 951 2.636893 AGCCATAGCCCATAAGAGTGAG 59.363 50.000 0.00 0.00 41.25 3.51
912 952 2.370189 GCCATAGCCCATAAGAGTGAGT 59.630 50.000 0.00 0.00 0.00 3.41
913 953 3.805108 GCCATAGCCCATAAGAGTGAGTG 60.805 52.174 0.00 0.00 0.00 3.51
914 954 3.389329 CCATAGCCCATAAGAGTGAGTGT 59.611 47.826 0.00 0.00 0.00 3.55
915 955 4.588951 CCATAGCCCATAAGAGTGAGTGTA 59.411 45.833 0.00 0.00 0.00 2.90
916 956 5.247110 CCATAGCCCATAAGAGTGAGTGTAT 59.753 44.000 0.00 0.00 0.00 2.29
917 957 6.437477 CCATAGCCCATAAGAGTGAGTGTATA 59.563 42.308 0.00 0.00 0.00 1.47
918 958 7.039011 CCATAGCCCATAAGAGTGAGTGTATAA 60.039 40.741 0.00 0.00 0.00 0.98
919 959 6.808321 AGCCCATAAGAGTGAGTGTATAAA 57.192 37.500 0.00 0.00 0.00 1.40
920 960 7.380423 AGCCCATAAGAGTGAGTGTATAAAT 57.620 36.000 0.00 0.00 0.00 1.40
1041 1082 1.725641 TGAAGATAGGTTGCGTGCAG 58.274 50.000 0.00 0.00 0.00 4.41
1055 1096 1.743772 CGTGCAGGGATCCTTTACAGG 60.744 57.143 12.58 6.82 42.50 4.00
1059 1100 2.764269 CAGGGATCCTTTACAGGGAGA 58.236 52.381 12.58 0.00 41.25 3.71
1143 1224 9.552114 GCGATATCCATCATTTAATTCTTTCTG 57.448 33.333 0.00 0.00 0.00 3.02
1153 1234 9.844790 TCATTTAATTCTTTCTGTTGCTGTATG 57.155 29.630 0.00 0.00 0.00 2.39
1223 1317 5.123186 TGGATTAAAATGGTTAGCTCGTGTG 59.877 40.000 0.00 0.00 0.00 3.82
1240 1334 1.076412 TGGCAACTGCTTTGTCCCA 60.076 52.632 1.06 0.00 39.27 4.37
1257 1353 6.870971 TGTCCCAAGTAAACATAGTTTCAC 57.129 37.500 0.00 0.00 0.00 3.18
1298 1394 7.437713 ACAGTATCTTGGTCTCCATGATTAA 57.562 36.000 17.80 3.78 43.05 1.40
1372 1468 3.217626 CTGCAATAAAGAGATGGACCCC 58.782 50.000 0.00 0.00 0.00 4.95
1393 1489 1.338105 GGGAATGGTTTTCTTGCTGCC 60.338 52.381 0.00 0.00 0.00 4.85
1559 1656 5.065218 GGTCTTCTCTACCAACGACGTTATA 59.935 44.000 13.77 8.16 36.96 0.98
1696 1817 5.758784 AGTCCTTTGTAAGTACAAGAACAGC 59.241 40.000 4.23 0.00 45.77 4.40
1697 1818 5.758784 GTCCTTTGTAAGTACAAGAACAGCT 59.241 40.000 4.23 0.00 45.77 4.24
1701 1822 7.307219 CCTTTGTAAGTACAAGAACAGCTACAC 60.307 40.741 4.23 0.00 45.77 2.90
1702 1823 6.401047 TGTAAGTACAAGAACAGCTACACT 57.599 37.500 0.00 0.00 32.40 3.55
1703 1824 6.444633 TGTAAGTACAAGAACAGCTACACTC 58.555 40.000 0.00 0.00 32.40 3.51
1704 1825 4.522722 AGTACAAGAACAGCTACACTCC 57.477 45.455 0.00 0.00 0.00 3.85
1706 1827 3.669251 ACAAGAACAGCTACACTCCTC 57.331 47.619 0.00 0.00 0.00 3.71
1708 1829 2.300152 CAAGAACAGCTACACTCCTCCA 59.700 50.000 0.00 0.00 0.00 3.86
1709 1830 2.175202 AGAACAGCTACACTCCTCCAG 58.825 52.381 0.00 0.00 0.00 3.86
1713 1834 0.686112 AGCTACACTCCTCCAGCTCC 60.686 60.000 0.00 0.00 40.25 4.70
1846 1967 0.457035 GCACATCATGGTCGGCAAAT 59.543 50.000 0.00 0.00 0.00 2.32
1873 1994 1.195674 GTCTTCAACTTTCAGCGGCTC 59.804 52.381 0.00 0.00 0.00 4.70
1879 2000 0.679505 ACTTTCAGCGGCTCAGTACA 59.320 50.000 0.00 0.00 0.00 2.90
1918 2039 2.021457 CCCGTCAAACTTCAGGTGTTT 58.979 47.619 0.00 0.00 38.04 2.83
1968 2089 2.298446 ACGATACATCATGGCTCTCTGG 59.702 50.000 0.00 0.00 0.00 3.86
1973 2094 1.420514 CATCATGGCTCTCTGGGACAT 59.579 52.381 0.00 0.00 38.20 3.06
1974 2095 1.126488 TCATGGCTCTCTGGGACATC 58.874 55.000 0.00 0.00 38.20 3.06
2011 2132 7.416551 CCACACATGTTTATTGATGGAGCATTA 60.417 37.037 0.00 0.00 0.00 1.90
2014 2135 9.616634 CACATGTTTATTGATGGAGCATTATAC 57.383 33.333 0.00 0.00 0.00 1.47
2114 2235 4.095782 GGACTATTAAGTTGCCGCATGAAA 59.904 41.667 0.00 0.00 35.56 2.69
2126 2247 2.408032 CCGCATGAAAATGTCGGTTTTG 59.592 45.455 0.00 0.00 36.88 2.44
2176 2297 2.439553 AATCTTCGGGGGCCTTGCAA 62.440 55.000 0.84 0.00 0.00 4.08
2324 2445 1.823470 TATGGCGTGCATTCCTGGC 60.823 57.895 8.40 1.58 0.00 4.85
2369 2490 1.857965 TGACCTGGAGAGAGATGGTG 58.142 55.000 0.00 0.00 0.00 4.17
2372 2493 2.167487 GACCTGGAGAGAGATGGTGTTC 59.833 54.545 0.00 0.00 0.00 3.18
2415 2536 5.379827 GGACAAGCTTCGTTTGTACAATAC 58.620 41.667 9.56 9.53 37.50 1.89
2432 2553 4.274950 ACAATACAAGAACCGGTGAACTTG 59.725 41.667 30.26 30.26 43.30 3.16
2476 2597 1.582968 CTGCCGCAAGTTGCAAGAT 59.417 52.632 26.56 0.00 45.36 2.40
2478 2599 2.090524 GCCGCAAGTTGCAAGATGC 61.091 57.895 26.56 20.95 45.36 3.91
2541 2694 0.028770 TTTGGCTTTTGAGTGTCGCG 59.971 50.000 0.00 0.00 0.00 5.87
2566 2723 4.475028 TCTTTATGCTGTCAAACAATGCG 58.525 39.130 0.00 0.00 0.00 4.73
2712 2916 3.196685 GGGAGCTATGTATTCTGCCCTAG 59.803 52.174 0.00 0.00 32.94 3.02
2713 2917 3.368948 GGAGCTATGTATTCTGCCCTAGC 60.369 52.174 0.00 0.00 40.48 3.42
2714 2918 2.569404 AGCTATGTATTCTGCCCTAGCC 59.431 50.000 0.00 0.00 38.69 3.93
2715 2919 2.569404 GCTATGTATTCTGCCCTAGCCT 59.431 50.000 0.00 0.00 38.69 4.58
2716 2920 3.769844 GCTATGTATTCTGCCCTAGCCTA 59.230 47.826 0.00 0.00 38.69 3.93
3029 3248 8.353684 ACGGTTGAAATATTACAATGTGAACAA 58.646 29.630 0.00 0.00 0.00 2.83
3076 3295 5.163311 CCAAGGTTTATGAATCCAAATCCCC 60.163 44.000 0.00 0.00 0.00 4.81
3077 3296 4.556697 AGGTTTATGAATCCAAATCCCCC 58.443 43.478 0.00 0.00 0.00 5.40
3133 3352 7.525158 TTATCCCTATCTTTTGGAACTCCTT 57.475 36.000 0.00 0.00 36.82 3.36
3155 3374 3.615509 TTTGCCCCTCCGCCGTTAG 62.616 63.158 0.00 0.00 0.00 2.34
3250 3469 6.208988 TGTTGGACACACTAGATGATACTC 57.791 41.667 0.00 0.00 0.00 2.59
3255 3474 5.255710 ACACACTAGATGATACTCTGCAC 57.744 43.478 0.00 0.00 0.00 4.57
3264 3483 0.790207 ATACTCTGCACGTTGTTGCG 59.210 50.000 0.00 0.00 46.20 4.85
3268 3487 1.194547 CTCTGCACGTTGTTGCGTAAT 59.805 47.619 0.00 0.00 46.20 1.89
3269 3488 1.070242 TCTGCACGTTGTTGCGTAATG 60.070 47.619 0.00 0.00 46.20 1.90
3270 3489 0.658368 TGCACGTTGTTGCGTAATGT 59.342 45.000 0.00 0.00 46.20 2.71
3271 3490 1.064208 TGCACGTTGTTGCGTAATGTT 59.936 42.857 0.00 0.00 46.20 2.71
3272 3491 1.706597 GCACGTTGTTGCGTAATGTTC 59.293 47.619 0.00 0.00 43.83 3.18
3273 3492 2.601266 GCACGTTGTTGCGTAATGTTCT 60.601 45.455 0.00 0.00 43.83 3.01
3274 3493 2.964123 CACGTTGTTGCGTAATGTTCTG 59.036 45.455 0.00 0.00 43.83 3.02
3275 3494 1.969256 CGTTGTTGCGTAATGTTCTGC 59.031 47.619 0.00 0.00 0.00 4.26
3276 3495 2.601029 CGTTGTTGCGTAATGTTCTGCA 60.601 45.455 0.00 0.00 35.15 4.41
3277 3496 3.367607 GTTGTTGCGTAATGTTCTGCAA 58.632 40.909 0.00 0.00 44.34 4.08
3285 3504 8.781067 TTGCGTAATGTTCTGCAATATATTTC 57.219 30.769 0.00 0.00 41.95 2.17
3286 3505 7.924940 TGCGTAATGTTCTGCAATATATTTCA 58.075 30.769 0.00 0.00 33.80 2.69
3287 3506 8.401709 TGCGTAATGTTCTGCAATATATTTCAA 58.598 29.630 0.00 0.00 33.80 2.69
3288 3507 9.398170 GCGTAATGTTCTGCAATATATTTCAAT 57.602 29.630 0.00 0.00 0.00 2.57
3385 3604 9.926158 AACATGTAGAATGAAAATTGTTATGCA 57.074 25.926 0.00 0.00 0.00 3.96
3389 3608 9.926158 TGTAGAATGAAAATTGTTATGCATGTT 57.074 25.926 10.16 0.00 0.00 2.71
3392 3611 9.146984 AGAATGAAAATTGTTATGCATGTTGAG 57.853 29.630 10.16 0.00 0.00 3.02
3393 3612 7.837202 ATGAAAATTGTTATGCATGTTGAGG 57.163 32.000 10.16 0.00 0.00 3.86
3394 3613 6.757237 TGAAAATTGTTATGCATGTTGAGGT 58.243 32.000 10.16 0.00 0.00 3.85
3395 3614 6.645827 TGAAAATTGTTATGCATGTTGAGGTG 59.354 34.615 10.16 0.00 0.00 4.00
3396 3615 5.981088 AATTGTTATGCATGTTGAGGTGA 57.019 34.783 10.16 0.00 0.00 4.02
3397 3616 5.571784 ATTGTTATGCATGTTGAGGTGAG 57.428 39.130 10.16 0.00 0.00 3.51
3398 3617 2.749076 TGTTATGCATGTTGAGGTGAGC 59.251 45.455 10.16 0.00 0.00 4.26
3399 3618 3.012518 GTTATGCATGTTGAGGTGAGCT 58.987 45.455 10.16 0.00 0.00 4.09
3400 3619 2.211250 ATGCATGTTGAGGTGAGCTT 57.789 45.000 0.00 0.00 0.00 3.74
3401 3620 1.985473 TGCATGTTGAGGTGAGCTTT 58.015 45.000 0.00 0.00 0.00 3.51
3402 3621 2.309613 TGCATGTTGAGGTGAGCTTTT 58.690 42.857 0.00 0.00 0.00 2.27
3403 3622 2.694628 TGCATGTTGAGGTGAGCTTTTT 59.305 40.909 0.00 0.00 0.00 1.94
3418 3637 1.946267 TTTTTCCACGAAGCTCGGC 59.054 52.632 9.75 0.00 45.59 5.54
3419 3638 0.534203 TTTTTCCACGAAGCTCGGCT 60.534 50.000 9.75 0.00 45.59 5.52
3441 3660 6.836577 CTTCCAAAAGCAATTTTCGGTTAA 57.163 33.333 0.00 0.00 0.00 2.01
3442 3661 6.836577 TTCCAAAAGCAATTTTCGGTTAAG 57.163 33.333 0.00 0.00 0.00 1.85
3443 3662 5.293560 TCCAAAAGCAATTTTCGGTTAAGG 58.706 37.500 0.00 0.00 0.00 2.69
3444 3663 4.450757 CCAAAAGCAATTTTCGGTTAAGGG 59.549 41.667 0.00 0.00 0.00 3.95
3445 3664 3.953712 AAGCAATTTTCGGTTAAGGGG 57.046 42.857 0.00 0.00 0.00 4.79
3446 3665 2.884320 AGCAATTTTCGGTTAAGGGGT 58.116 42.857 0.00 0.00 0.00 4.95
3447 3666 2.560981 AGCAATTTTCGGTTAAGGGGTG 59.439 45.455 0.00 0.00 0.00 4.61
3448 3667 2.353307 GCAATTTTCGGTTAAGGGGTGG 60.353 50.000 0.00 0.00 0.00 4.61
3449 3668 1.552578 ATTTTCGGTTAAGGGGTGGC 58.447 50.000 0.00 0.00 0.00 5.01
3450 3669 0.479378 TTTTCGGTTAAGGGGTGGCT 59.521 50.000 0.00 0.00 0.00 4.75
3451 3670 1.360185 TTTCGGTTAAGGGGTGGCTA 58.640 50.000 0.00 0.00 0.00 3.93
3452 3671 1.587066 TTCGGTTAAGGGGTGGCTAT 58.413 50.000 0.00 0.00 0.00 2.97
3453 3672 1.587066 TCGGTTAAGGGGTGGCTATT 58.413 50.000 0.00 0.00 0.00 1.73
3454 3673 1.487558 TCGGTTAAGGGGTGGCTATTC 59.512 52.381 0.00 0.00 0.00 1.75
3455 3674 1.210967 CGGTTAAGGGGTGGCTATTCA 59.789 52.381 0.00 0.00 0.00 2.57
3456 3675 2.745152 CGGTTAAGGGGTGGCTATTCAG 60.745 54.545 0.00 0.00 0.00 3.02
3457 3676 2.508300 GGTTAAGGGGTGGCTATTCAGA 59.492 50.000 0.00 0.00 0.00 3.27
3458 3677 3.138468 GGTTAAGGGGTGGCTATTCAGAT 59.862 47.826 0.00 0.00 0.00 2.90
3459 3678 4.349930 GGTTAAGGGGTGGCTATTCAGATA 59.650 45.833 0.00 0.00 0.00 1.98
3460 3679 5.306394 GTTAAGGGGTGGCTATTCAGATAC 58.694 45.833 0.00 0.00 0.00 2.24
3461 3680 3.060479 AGGGGTGGCTATTCAGATACA 57.940 47.619 0.00 0.00 0.00 2.29
3462 3681 2.975489 AGGGGTGGCTATTCAGATACAG 59.025 50.000 0.00 0.00 0.00 2.74
3463 3682 2.972713 GGGGTGGCTATTCAGATACAGA 59.027 50.000 0.00 0.00 0.00 3.41
3464 3683 3.391296 GGGGTGGCTATTCAGATACAGAA 59.609 47.826 0.00 0.00 0.00 3.02
3465 3684 4.503991 GGGGTGGCTATTCAGATACAGAAG 60.504 50.000 0.00 0.00 0.00 2.85
3466 3685 4.345257 GGGTGGCTATTCAGATACAGAAGA 59.655 45.833 0.00 0.00 0.00 2.87
3467 3686 5.293560 GGTGGCTATTCAGATACAGAAGAC 58.706 45.833 0.00 0.00 0.00 3.01
3468 3687 5.163405 GGTGGCTATTCAGATACAGAAGACA 60.163 44.000 0.00 0.00 0.00 3.41
3469 3688 6.463614 GGTGGCTATTCAGATACAGAAGACAT 60.464 42.308 0.00 0.00 0.00 3.06
3470 3689 7.255977 GGTGGCTATTCAGATACAGAAGACATA 60.256 40.741 0.00 0.00 0.00 2.29
3471 3690 8.310382 GTGGCTATTCAGATACAGAAGACATAT 58.690 37.037 0.00 0.00 0.00 1.78
3472 3691 8.526978 TGGCTATTCAGATACAGAAGACATATC 58.473 37.037 0.00 0.00 0.00 1.63
3473 3692 7.978975 GGCTATTCAGATACAGAAGACATATCC 59.021 40.741 0.00 0.00 0.00 2.59
3474 3693 7.978975 GCTATTCAGATACAGAAGACATATCCC 59.021 40.741 0.00 0.00 0.00 3.85
3475 3694 6.672266 TTCAGATACAGAAGACATATCCCC 57.328 41.667 0.00 0.00 0.00 4.81
3476 3695 5.087323 TCAGATACAGAAGACATATCCCCC 58.913 45.833 0.00 0.00 0.00 5.40
3477 3696 5.090139 CAGATACAGAAGACATATCCCCCT 58.910 45.833 0.00 0.00 0.00 4.79
3478 3697 5.545723 CAGATACAGAAGACATATCCCCCTT 59.454 44.000 0.00 0.00 0.00 3.95
3479 3698 5.782845 AGATACAGAAGACATATCCCCCTTC 59.217 44.000 0.00 0.00 36.26 3.46
3480 3699 3.736094 ACAGAAGACATATCCCCCTTCA 58.264 45.455 0.00 0.00 37.92 3.02
3481 3700 3.456277 ACAGAAGACATATCCCCCTTCAC 59.544 47.826 0.00 0.00 37.92 3.18
3482 3701 3.455910 CAGAAGACATATCCCCCTTCACA 59.544 47.826 0.00 0.00 37.92 3.58
3483 3702 3.713764 AGAAGACATATCCCCCTTCACAG 59.286 47.826 0.00 0.00 37.92 3.66
3484 3703 1.771255 AGACATATCCCCCTTCACAGC 59.229 52.381 0.00 0.00 0.00 4.40
3485 3704 1.490490 GACATATCCCCCTTCACAGCA 59.510 52.381 0.00 0.00 0.00 4.41
3486 3705 2.107204 GACATATCCCCCTTCACAGCAT 59.893 50.000 0.00 0.00 0.00 3.79
3487 3706 2.158564 ACATATCCCCCTTCACAGCATG 60.159 50.000 0.00 0.00 46.00 4.06
3488 3707 0.183492 TATCCCCCTTCACAGCATGC 59.817 55.000 10.51 10.51 42.53 4.06
3489 3708 2.578586 ATCCCCCTTCACAGCATGCC 62.579 60.000 15.66 0.00 42.53 4.40
3490 3709 2.036098 CCCCTTCACAGCATGCCA 59.964 61.111 15.66 0.00 42.53 4.92
3491 3710 2.345760 CCCCTTCACAGCATGCCAC 61.346 63.158 15.66 0.00 42.53 5.01
3492 3711 1.303888 CCCTTCACAGCATGCCACT 60.304 57.895 15.66 0.00 42.53 4.00
3493 3712 1.592400 CCCTTCACAGCATGCCACTG 61.592 60.000 15.66 9.13 42.53 3.66
3494 3713 1.211969 CTTCACAGCATGCCACTGC 59.788 57.895 15.66 0.00 42.53 4.40
3495 3714 2.209064 CTTCACAGCATGCCACTGCC 62.209 60.000 15.66 0.00 43.33 4.85
3496 3715 2.980105 TTCACAGCATGCCACTGCCA 62.980 55.000 15.66 0.00 43.33 4.92
3497 3716 2.675423 ACAGCATGCCACTGCCAG 60.675 61.111 15.66 0.00 43.33 4.85
3498 3717 4.129737 CAGCATGCCACTGCCAGC 62.130 66.667 15.66 0.00 43.33 4.85
3499 3718 4.361971 AGCATGCCACTGCCAGCT 62.362 61.111 15.66 0.00 43.33 4.24
3500 3719 4.129737 GCATGCCACTGCCAGCTG 62.130 66.667 6.36 6.78 36.10 4.24
3501 3720 3.449227 CATGCCACTGCCAGCTGG 61.449 66.667 29.34 29.34 36.33 4.85
3502 3721 4.753662 ATGCCACTGCCAGCTGGG 62.754 66.667 33.46 20.34 40.85 4.45
3505 3724 4.729918 CCACTGCCAGCTGGGTCC 62.730 72.222 33.46 17.84 39.65 4.46
3506 3725 4.729918 CACTGCCAGCTGGGTCCC 62.730 72.222 33.46 17.46 39.65 4.46
3508 3727 4.729918 CTGCCAGCTGGGTCCCAC 62.730 72.222 33.46 16.33 39.65 4.61
3510 3729 4.416738 GCCAGCTGGGTCCCACTC 62.417 72.222 33.46 10.92 39.65 3.51
3511 3730 2.930019 CCAGCTGGGTCCCACTCA 60.930 66.667 26.14 0.00 0.00 3.41
3512 3731 2.304056 CCAGCTGGGTCCCACTCAT 61.304 63.158 26.14 0.00 0.00 2.90
3513 3732 0.982852 CCAGCTGGGTCCCACTCATA 60.983 60.000 26.14 0.00 0.00 2.15
3514 3733 0.467384 CAGCTGGGTCCCACTCATAG 59.533 60.000 6.47 0.00 0.00 2.23
3515 3734 0.339859 AGCTGGGTCCCACTCATAGA 59.660 55.000 6.47 0.00 0.00 1.98
3516 3735 0.755686 GCTGGGTCCCACTCATAGAG 59.244 60.000 6.47 0.00 35.52 2.43
3517 3736 1.967274 GCTGGGTCCCACTCATAGAGT 60.967 57.143 6.47 0.00 44.44 3.24
3518 3737 2.472029 CTGGGTCCCACTCATAGAGTT 58.528 52.381 6.47 0.00 41.37 3.01
3519 3738 2.169352 CTGGGTCCCACTCATAGAGTTG 59.831 54.545 6.47 0.00 41.37 3.16
3520 3739 1.134371 GGGTCCCACTCATAGAGTTGC 60.134 57.143 1.78 0.00 41.37 4.17
3521 3740 1.134371 GGTCCCACTCATAGAGTTGCC 60.134 57.143 0.00 0.00 41.37 4.52
3522 3741 1.555075 GTCCCACTCATAGAGTTGCCA 59.445 52.381 0.00 0.00 41.37 4.92
3523 3742 1.555075 TCCCACTCATAGAGTTGCCAC 59.445 52.381 0.00 0.00 41.37 5.01
3524 3743 1.407437 CCCACTCATAGAGTTGCCACC 60.407 57.143 0.00 0.00 41.37 4.61
3525 3744 1.278985 CCACTCATAGAGTTGCCACCA 59.721 52.381 0.00 0.00 41.37 4.17
3526 3745 2.290260 CCACTCATAGAGTTGCCACCAA 60.290 50.000 0.00 0.00 41.37 3.67
3527 3746 3.411446 CACTCATAGAGTTGCCACCAAA 58.589 45.455 0.00 0.00 41.37 3.28
3528 3747 3.820467 CACTCATAGAGTTGCCACCAAAA 59.180 43.478 0.00 0.00 41.37 2.44
3529 3748 4.278170 CACTCATAGAGTTGCCACCAAAAA 59.722 41.667 0.00 0.00 41.37 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.214328 AGCTGTTGAAAGTTCGGACATT 58.786 40.909 0.00 0.00 0.00 2.71
38 39 3.415212 TGACCTCAAATTGAAGGAGCTG 58.585 45.455 15.11 0.00 0.00 4.24
111 113 1.202818 GGGGAGAGAGAGAGAGAGAGC 60.203 61.905 0.00 0.00 0.00 4.09
127 129 1.388531 GAGGAGTGAGGACTGGGGA 59.611 63.158 0.00 0.00 30.16 4.81
128 130 1.687493 GGAGGAGTGAGGACTGGGG 60.687 68.421 0.00 0.00 30.16 4.96
130 132 1.612395 GCTGGAGGAGTGAGGACTGG 61.612 65.000 0.00 0.00 30.16 4.00
131 133 0.614415 AGCTGGAGGAGTGAGGACTG 60.614 60.000 0.00 0.00 30.16 3.51
132 134 0.116143 AAGCTGGAGGAGTGAGGACT 59.884 55.000 0.00 0.00 33.98 3.85
147 150 0.985490 GGGTGGGAGGAGATGAAGCT 60.985 60.000 0.00 0.00 0.00 3.74
149 152 1.348775 GGGGGTGGGAGGAGATGAAG 61.349 65.000 0.00 0.00 0.00 3.02
161 164 2.142292 CTTCTTGGAGGTGGGGGTGG 62.142 65.000 0.00 0.00 0.00 4.61
162 165 1.133809 TCTTCTTGGAGGTGGGGGTG 61.134 60.000 0.00 0.00 0.00 4.61
163 166 1.134438 GTCTTCTTGGAGGTGGGGGT 61.134 60.000 0.00 0.00 0.00 4.95
164 167 1.133809 TGTCTTCTTGGAGGTGGGGG 61.134 60.000 0.00 0.00 0.00 5.40
165 168 0.771127 TTGTCTTCTTGGAGGTGGGG 59.229 55.000 0.00 0.00 0.00 4.96
166 169 1.545651 GGTTGTCTTCTTGGAGGTGGG 60.546 57.143 0.00 0.00 0.00 4.61
167 170 1.421646 AGGTTGTCTTCTTGGAGGTGG 59.578 52.381 0.00 0.00 0.00 4.61
168 171 2.104792 TGAGGTTGTCTTCTTGGAGGTG 59.895 50.000 0.00 0.00 0.00 4.00
169 172 2.370189 CTGAGGTTGTCTTCTTGGAGGT 59.630 50.000 0.00 0.00 0.00 3.85
170 173 2.370189 ACTGAGGTTGTCTTCTTGGAGG 59.630 50.000 0.00 0.00 0.00 4.30
171 174 3.556004 GGACTGAGGTTGTCTTCTTGGAG 60.556 52.174 0.00 0.00 35.04 3.86
172 175 2.368875 GGACTGAGGTTGTCTTCTTGGA 59.631 50.000 0.00 0.00 35.04 3.53
173 176 2.551071 GGGACTGAGGTTGTCTTCTTGG 60.551 54.545 0.00 0.00 35.04 3.61
174 177 2.370189 AGGGACTGAGGTTGTCTTCTTG 59.630 50.000 0.00 0.00 37.18 3.02
175 178 2.635427 GAGGGACTGAGGTTGTCTTCTT 59.365 50.000 0.00 0.00 41.55 2.52
176 179 2.252714 GAGGGACTGAGGTTGTCTTCT 58.747 52.381 0.00 0.00 41.55 2.85
177 180 1.971357 TGAGGGACTGAGGTTGTCTTC 59.029 52.381 0.00 0.00 41.55 2.87
178 181 1.694696 GTGAGGGACTGAGGTTGTCTT 59.305 52.381 0.00 0.00 41.55 3.01
179 182 1.133009 AGTGAGGGACTGAGGTTGTCT 60.133 52.381 0.00 0.00 41.55 3.41
180 183 1.273886 GAGTGAGGGACTGAGGTTGTC 59.726 57.143 0.00 0.00 41.55 3.18
181 184 1.133009 AGAGTGAGGGACTGAGGTTGT 60.133 52.381 0.00 0.00 41.55 3.32
182 185 1.548269 GAGAGTGAGGGACTGAGGTTG 59.452 57.143 0.00 0.00 41.55 3.77
190 193 3.462678 GGGCGGAGAGTGAGGGAC 61.463 72.222 0.00 0.00 0.00 4.46
394 404 1.305633 TCCCCTCTGACCTCTGCAG 60.306 63.158 7.63 7.63 34.71 4.41
516 535 3.715628 AAAAATGACCTGTGCAGTGTC 57.284 42.857 11.33 11.33 32.71 3.67
591 611 0.611618 TTGGATGGGAAGCACGCAAT 60.612 50.000 5.00 0.00 44.22 3.56
653 674 5.679734 AGTCATGGATCGATTAACAATGC 57.320 39.130 0.00 0.00 0.00 3.56
694 715 2.643551 CATGAACCACGGGCTAATTCT 58.356 47.619 0.00 0.00 0.00 2.40
695 716 1.676006 CCATGAACCACGGGCTAATTC 59.324 52.381 0.00 0.00 0.00 2.17
840 880 4.324022 GGGGTATTCCTCCTTCTCGAAAAA 60.324 45.833 0.00 0.00 35.33 1.94
841 881 3.199289 GGGGTATTCCTCCTTCTCGAAAA 59.801 47.826 0.00 0.00 35.33 2.29
842 882 2.770232 GGGGTATTCCTCCTTCTCGAAA 59.230 50.000 0.00 0.00 35.33 3.46
843 883 2.395619 GGGGTATTCCTCCTTCTCGAA 58.604 52.381 0.00 0.00 35.33 3.71
844 884 2.083628 GGGGTATTCCTCCTTCTCGA 57.916 55.000 0.00 0.00 35.33 4.04
852 892 2.447959 AGGCCGGGGGTATTCCTC 60.448 66.667 2.18 0.00 35.33 3.71
853 893 2.447959 GAGGCCGGGGGTATTCCT 60.448 66.667 2.18 0.00 35.33 3.36
854 894 2.447959 AGAGGCCGGGGGTATTCC 60.448 66.667 2.18 0.00 0.00 3.01
855 895 2.829592 CAGAGGCCGGGGGTATTC 59.170 66.667 2.18 0.00 0.00 1.75
856 896 3.489513 GCAGAGGCCGGGGGTATT 61.490 66.667 2.18 0.00 0.00 1.89
857 897 4.815973 TGCAGAGGCCGGGGGTAT 62.816 66.667 2.18 0.00 40.13 2.73
858 898 4.815973 ATGCAGAGGCCGGGGGTA 62.816 66.667 2.18 0.00 40.13 3.69
861 901 4.247380 GAGATGCAGAGGCCGGGG 62.247 72.222 2.18 0.00 40.13 5.73
862 902 2.739996 AAGAGATGCAGAGGCCGGG 61.740 63.158 2.18 0.00 40.13 5.73
863 903 1.523258 CAAGAGATGCAGAGGCCGG 60.523 63.158 0.00 0.00 40.13 6.13
864 904 0.106335 ATCAAGAGATGCAGAGGCCG 59.894 55.000 0.00 0.00 40.13 6.13
865 905 1.595466 CATCAAGAGATGCAGAGGCC 58.405 55.000 0.00 0.00 44.61 5.19
874 914 1.003928 TGGCTGTGTGCATCAAGAGAT 59.996 47.619 0.00 0.00 45.15 2.75
875 915 0.397564 TGGCTGTGTGCATCAAGAGA 59.602 50.000 0.00 0.00 45.15 3.10
876 916 1.460504 ATGGCTGTGTGCATCAAGAG 58.539 50.000 0.00 0.00 45.15 2.85
877 917 2.635714 CTATGGCTGTGTGCATCAAGA 58.364 47.619 0.00 0.00 45.15 3.02
878 918 1.065102 GCTATGGCTGTGTGCATCAAG 59.935 52.381 0.00 0.00 45.15 3.02
879 919 1.097232 GCTATGGCTGTGTGCATCAA 58.903 50.000 0.00 0.00 45.15 2.57
880 920 0.749091 GGCTATGGCTGTGTGCATCA 60.749 55.000 0.00 0.00 45.15 3.07
881 921 1.450531 GGGCTATGGCTGTGTGCATC 61.451 60.000 0.00 0.00 45.15 3.91
882 922 1.454479 GGGCTATGGCTGTGTGCAT 60.454 57.895 0.00 0.00 45.15 3.96
883 923 2.045045 GGGCTATGGCTGTGTGCA 60.045 61.111 0.00 0.00 45.15 4.57
884 924 0.179020 TATGGGCTATGGCTGTGTGC 60.179 55.000 0.00 0.00 41.94 4.57
885 925 2.158769 TCTTATGGGCTATGGCTGTGTG 60.159 50.000 0.00 0.00 38.73 3.82
886 926 2.105477 CTCTTATGGGCTATGGCTGTGT 59.895 50.000 0.00 0.00 38.73 3.72
887 927 2.105477 ACTCTTATGGGCTATGGCTGTG 59.895 50.000 0.00 0.00 38.73 3.66
888 928 2.105477 CACTCTTATGGGCTATGGCTGT 59.895 50.000 0.00 0.00 38.73 4.40
889 929 2.369860 TCACTCTTATGGGCTATGGCTG 59.630 50.000 0.00 0.00 38.73 4.85
890 930 2.636893 CTCACTCTTATGGGCTATGGCT 59.363 50.000 0.00 0.00 38.73 4.75
891 931 2.370189 ACTCACTCTTATGGGCTATGGC 59.630 50.000 0.00 0.00 37.82 4.40
892 932 3.389329 ACACTCACTCTTATGGGCTATGG 59.611 47.826 0.00 0.00 0.00 2.74
893 933 4.679373 ACACTCACTCTTATGGGCTATG 57.321 45.455 0.00 0.00 0.00 2.23
894 934 8.492415 TTTATACACTCACTCTTATGGGCTAT 57.508 34.615 0.00 0.00 0.00 2.97
895 935 7.907841 TTTATACACTCACTCTTATGGGCTA 57.092 36.000 0.00 0.00 0.00 3.93
896 936 6.808321 TTTATACACTCACTCTTATGGGCT 57.192 37.500 0.00 0.00 0.00 5.19
897 937 7.328737 CGTATTTATACACTCACTCTTATGGGC 59.671 40.741 1.26 0.00 32.87 5.36
898 938 7.328737 GCGTATTTATACACTCACTCTTATGGG 59.671 40.741 1.26 0.00 32.87 4.00
899 939 7.328737 GGCGTATTTATACACTCACTCTTATGG 59.671 40.741 1.26 0.00 32.87 2.74
900 940 8.082852 AGGCGTATTTATACACTCACTCTTATG 58.917 37.037 1.26 0.00 32.87 1.90
901 941 8.082852 CAGGCGTATTTATACACTCACTCTTAT 58.917 37.037 1.26 0.00 32.87 1.73
902 942 7.423199 CAGGCGTATTTATACACTCACTCTTA 58.577 38.462 1.26 0.00 32.87 2.10
903 943 6.273825 CAGGCGTATTTATACACTCACTCTT 58.726 40.000 1.26 0.00 32.87 2.85
904 944 5.736492 GCAGGCGTATTTATACACTCACTCT 60.736 44.000 1.26 0.00 32.87 3.24
905 945 4.444720 GCAGGCGTATTTATACACTCACTC 59.555 45.833 1.26 0.00 32.87 3.51
906 946 4.142026 TGCAGGCGTATTTATACACTCACT 60.142 41.667 1.26 0.00 32.87 3.41
907 947 4.116961 TGCAGGCGTATTTATACACTCAC 58.883 43.478 1.26 0.00 32.87 3.51
908 948 4.098807 TCTGCAGGCGTATTTATACACTCA 59.901 41.667 15.13 0.00 32.87 3.41
909 949 4.617959 TCTGCAGGCGTATTTATACACTC 58.382 43.478 15.13 0.00 32.87 3.51
910 950 4.621991 CTCTGCAGGCGTATTTATACACT 58.378 43.478 15.13 0.00 32.87 3.55
911 951 3.184581 GCTCTGCAGGCGTATTTATACAC 59.815 47.826 15.13 0.00 32.87 2.90
912 952 3.069586 AGCTCTGCAGGCGTATTTATACA 59.930 43.478 15.13 0.00 32.87 2.29
913 953 3.654414 AGCTCTGCAGGCGTATTTATAC 58.346 45.455 15.13 0.00 34.52 1.47
914 954 3.574396 AGAGCTCTGCAGGCGTATTTATA 59.426 43.478 17.42 0.00 34.52 0.98
915 955 2.366916 AGAGCTCTGCAGGCGTATTTAT 59.633 45.455 17.42 0.00 34.52 1.40
916 956 1.757118 AGAGCTCTGCAGGCGTATTTA 59.243 47.619 17.42 0.00 34.52 1.40
917 957 0.539051 AGAGCTCTGCAGGCGTATTT 59.461 50.000 17.42 0.00 34.52 1.40
918 958 0.539051 AAGAGCTCTGCAGGCGTATT 59.461 50.000 19.06 10.44 34.52 1.89
919 959 0.179089 CAAGAGCTCTGCAGGCGTAT 60.179 55.000 19.06 5.13 34.52 3.06
920 960 1.216444 CAAGAGCTCTGCAGGCGTA 59.784 57.895 19.06 0.00 34.52 4.42
1004 1045 4.335874 TCTTCATACCTAGCAGAGTTCGAC 59.664 45.833 0.00 0.00 0.00 4.20
1041 1082 4.797912 AAATCTCCCTGTAAAGGATCCC 57.202 45.455 8.55 0.00 31.48 3.85
1181 1275 9.691362 TTTAATCCATTTCAAGTTCAGCTTTAC 57.309 29.630 0.00 0.00 34.69 2.01
1223 1317 3.854856 TGGGACAAAGCAGTTGCC 58.145 55.556 0.00 3.43 41.31 4.52
1353 1449 2.222027 CGGGGTCCATCTCTTTATTGC 58.778 52.381 0.00 0.00 0.00 3.56
1372 1468 1.669795 GCAGCAAGAAAACCATTCCCG 60.670 52.381 0.00 0.00 0.00 5.14
1393 1489 3.875727 CCACCAGATCATCAGTTAGCTTG 59.124 47.826 0.00 0.00 0.00 4.01
1696 1817 1.110442 CTGGAGCTGGAGGAGTGTAG 58.890 60.000 0.00 0.00 0.00 2.74
1697 1818 0.324738 CCTGGAGCTGGAGGAGTGTA 60.325 60.000 0.00 0.00 0.00 2.90
1701 1822 1.799933 AATACCTGGAGCTGGAGGAG 58.200 55.000 13.56 0.00 33.16 3.69
1702 1823 1.839994 CAAATACCTGGAGCTGGAGGA 59.160 52.381 13.56 0.00 33.16 3.71
1703 1824 1.748591 GCAAATACCTGGAGCTGGAGG 60.749 57.143 0.00 6.13 35.26 4.30
1704 1825 1.673168 GCAAATACCTGGAGCTGGAG 58.327 55.000 0.00 0.00 0.00 3.86
1706 1827 1.097547 CGGCAAATACCTGGAGCTGG 61.098 60.000 0.00 0.00 0.00 4.85
1708 1829 1.452108 GCGGCAAATACCTGGAGCT 60.452 57.895 0.00 0.00 0.00 4.09
1709 1830 1.032114 AAGCGGCAAATACCTGGAGC 61.032 55.000 0.00 0.00 0.00 4.70
1713 1834 2.612212 ACGATAAAGCGGCAAATACCTG 59.388 45.455 1.45 0.00 35.12 4.00
1846 1967 4.208460 CGCTGAAAGTTGAAGACGTAGAAA 59.792 41.667 0.00 0.00 35.30 2.52
1873 1994 4.201910 CCAAATCCCAAATAGCGTGTACTG 60.202 45.833 0.00 0.00 0.00 2.74
1879 2000 1.111277 GGCCAAATCCCAAATAGCGT 58.889 50.000 0.00 0.00 0.00 5.07
1918 2039 2.484770 CCAAGTGGAAAGGTCAGACGAA 60.485 50.000 0.00 0.00 37.39 3.85
1968 2089 3.251004 GTGTGGTTGAGAAACTGATGTCC 59.749 47.826 0.00 0.00 0.00 4.02
1973 2094 3.884895 ACATGTGTGGTTGAGAAACTGA 58.115 40.909 0.00 0.00 0.00 3.41
1974 2095 4.637483 AACATGTGTGGTTGAGAAACTG 57.363 40.909 0.00 0.00 0.00 3.16
2011 2132 2.150390 TGCAAATCTGTGTGCACGTAT 58.850 42.857 13.13 0.00 45.52 3.06
2114 2235 2.159382 CCTAGCCACAAAACCGACATT 58.841 47.619 0.00 0.00 0.00 2.71
2144 2265 0.179189 GAAGATTGGCCGAAGCAACG 60.179 55.000 0.00 0.00 42.56 4.10
2176 2297 0.107456 CCTCCTCTGGCAATGCGTAT 59.893 55.000 0.00 0.00 0.00 3.06
2313 2434 0.889994 GTCACATTGCCAGGAATGCA 59.110 50.000 11.30 0.00 36.89 3.96
2314 2435 1.180029 AGTCACATTGCCAGGAATGC 58.820 50.000 11.30 0.00 36.89 3.56
2369 2490 1.525619 CCGTTTGTCGAACAGGAGAAC 59.474 52.381 3.85 0.00 42.86 3.01
2372 2493 1.566018 GCCCGTTTGTCGAACAGGAG 61.566 60.000 9.16 4.52 37.93 3.69
2415 2536 1.260561 CGTCAAGTTCACCGGTTCTTG 59.739 52.381 25.47 25.47 38.69 3.02
2432 2553 3.254892 GGTCTTCTGGTTGAATCTCGTC 58.745 50.000 0.00 0.00 33.71 4.20
2466 2587 4.123497 TGATAGTACGCATCTTGCAACT 57.877 40.909 0.00 8.83 45.36 3.16
2476 2597 4.329462 TGCCACATAATGATAGTACGCA 57.671 40.909 0.00 0.00 0.00 5.24
2478 2599 5.724328 AGGATGCCACATAATGATAGTACG 58.276 41.667 0.00 0.00 0.00 3.67
2541 2694 4.503741 TTGTTTGACAGCATAAAGAGGC 57.496 40.909 0.00 0.00 0.00 4.70
2712 2916 3.550437 TTTTCAGAGAGATGGCTAGGC 57.450 47.619 9.85 9.85 0.00 3.93
2713 2917 9.956640 AATTATATTTTCAGAGAGATGGCTAGG 57.043 33.333 0.00 0.00 0.00 3.02
2715 2919 9.950496 GGAATTATATTTTCAGAGAGATGGCTA 57.050 33.333 0.00 0.00 0.00 3.93
2716 2920 8.667737 AGGAATTATATTTTCAGAGAGATGGCT 58.332 33.333 0.00 0.00 0.00 4.75
2797 3016 5.009610 CCCAAGATACCAAATGATAAACGGG 59.990 44.000 0.00 0.00 0.00 5.28
3133 3352 2.353573 GGCGGAGGGGCAAAAGTA 59.646 61.111 0.00 0.00 41.77 2.24
3155 3374 0.752658 GGCATTTTCATAGGGCCACC 59.247 55.000 6.18 0.00 44.01 4.61
3234 3453 4.201960 ACGTGCAGAGTATCATCTAGTGTG 60.202 45.833 0.00 0.00 37.82 3.82
3255 3474 1.969256 GCAGAACATTACGCAACAACG 59.031 47.619 0.00 0.00 39.50 4.10
3359 3578 9.926158 TGCATAACAATTTTCATTCTACATGTT 57.074 25.926 2.30 0.00 34.48 2.71
3363 3582 9.926158 AACATGCATAACAATTTTCATTCTACA 57.074 25.926 0.00 0.00 0.00 2.74
3366 3585 9.146984 CTCAACATGCATAACAATTTTCATTCT 57.853 29.630 0.00 0.00 0.00 2.40
3367 3586 8.385111 CCTCAACATGCATAACAATTTTCATTC 58.615 33.333 0.00 0.00 0.00 2.67
3368 3587 7.879160 ACCTCAACATGCATAACAATTTTCATT 59.121 29.630 0.00 0.00 0.00 2.57
3369 3588 7.332430 CACCTCAACATGCATAACAATTTTCAT 59.668 33.333 0.00 0.00 0.00 2.57
3370 3589 6.645827 CACCTCAACATGCATAACAATTTTCA 59.354 34.615 0.00 0.00 0.00 2.69
3371 3590 6.867816 TCACCTCAACATGCATAACAATTTTC 59.132 34.615 0.00 0.00 0.00 2.29
3372 3591 6.757237 TCACCTCAACATGCATAACAATTTT 58.243 32.000 0.00 0.00 0.00 1.82
3373 3592 6.343716 TCACCTCAACATGCATAACAATTT 57.656 33.333 0.00 0.00 0.00 1.82
3374 3593 5.622914 GCTCACCTCAACATGCATAACAATT 60.623 40.000 0.00 0.00 0.00 2.32
3375 3594 4.142315 GCTCACCTCAACATGCATAACAAT 60.142 41.667 0.00 0.00 0.00 2.71
3376 3595 3.191162 GCTCACCTCAACATGCATAACAA 59.809 43.478 0.00 0.00 0.00 2.83
3377 3596 2.749076 GCTCACCTCAACATGCATAACA 59.251 45.455 0.00 0.00 0.00 2.41
3378 3597 3.012518 AGCTCACCTCAACATGCATAAC 58.987 45.455 0.00 0.00 0.00 1.89
3379 3598 3.354948 AGCTCACCTCAACATGCATAA 57.645 42.857 0.00 0.00 0.00 1.90
3380 3599 3.354948 AAGCTCACCTCAACATGCATA 57.645 42.857 0.00 0.00 0.00 3.14
3381 3600 2.211250 AAGCTCACCTCAACATGCAT 57.789 45.000 0.00 0.00 0.00 3.96
3382 3601 1.985473 AAAGCTCACCTCAACATGCA 58.015 45.000 0.00 0.00 0.00 3.96
3383 3602 3.375782 AAAAAGCTCACCTCAACATGC 57.624 42.857 0.00 0.00 0.00 4.06
3400 3619 0.534203 AGCCGAGCTTCGTGGAAAAA 60.534 50.000 0.00 0.00 38.40 1.94
3401 3620 0.534203 AAGCCGAGCTTCGTGGAAAA 60.534 50.000 5.44 0.00 46.77 2.29
3402 3621 1.070786 AAGCCGAGCTTCGTGGAAA 59.929 52.632 5.44 0.00 46.77 3.13
3403 3622 2.741092 AAGCCGAGCTTCGTGGAA 59.259 55.556 5.44 0.00 46.77 3.53
3422 3641 4.450757 CCCCTTAACCGAAAATTGCTTTTG 59.549 41.667 0.00 0.00 34.73 2.44
3423 3642 4.101898 ACCCCTTAACCGAAAATTGCTTTT 59.898 37.500 0.00 0.00 37.28 2.27
3424 3643 3.644265 ACCCCTTAACCGAAAATTGCTTT 59.356 39.130 0.00 0.00 0.00 3.51
3425 3644 3.006430 CACCCCTTAACCGAAAATTGCTT 59.994 43.478 0.00 0.00 0.00 3.91
3426 3645 2.560981 CACCCCTTAACCGAAAATTGCT 59.439 45.455 0.00 0.00 0.00 3.91
3427 3646 2.353307 CCACCCCTTAACCGAAAATTGC 60.353 50.000 0.00 0.00 0.00 3.56
3428 3647 2.353307 GCCACCCCTTAACCGAAAATTG 60.353 50.000 0.00 0.00 0.00 2.32
3429 3648 1.897133 GCCACCCCTTAACCGAAAATT 59.103 47.619 0.00 0.00 0.00 1.82
3430 3649 1.076513 AGCCACCCCTTAACCGAAAAT 59.923 47.619 0.00 0.00 0.00 1.82
3431 3650 0.479378 AGCCACCCCTTAACCGAAAA 59.521 50.000 0.00 0.00 0.00 2.29
3432 3651 1.360185 TAGCCACCCCTTAACCGAAA 58.640 50.000 0.00 0.00 0.00 3.46
3433 3652 1.587066 ATAGCCACCCCTTAACCGAA 58.413 50.000 0.00 0.00 0.00 4.30
3434 3653 1.487558 GAATAGCCACCCCTTAACCGA 59.512 52.381 0.00 0.00 0.00 4.69
3435 3654 1.210967 TGAATAGCCACCCCTTAACCG 59.789 52.381 0.00 0.00 0.00 4.44
3436 3655 2.508300 TCTGAATAGCCACCCCTTAACC 59.492 50.000 0.00 0.00 0.00 2.85
3437 3656 3.926058 TCTGAATAGCCACCCCTTAAC 57.074 47.619 0.00 0.00 0.00 2.01
3438 3657 4.972568 TGTATCTGAATAGCCACCCCTTAA 59.027 41.667 0.00 0.00 0.00 1.85
3439 3658 4.562767 TGTATCTGAATAGCCACCCCTTA 58.437 43.478 0.00 0.00 0.00 2.69
3440 3659 3.392616 CTGTATCTGAATAGCCACCCCTT 59.607 47.826 0.00 0.00 0.00 3.95
3441 3660 2.975489 CTGTATCTGAATAGCCACCCCT 59.025 50.000 0.00 0.00 0.00 4.79
3442 3661 2.972713 TCTGTATCTGAATAGCCACCCC 59.027 50.000 0.00 0.00 0.00 4.95
3443 3662 4.345257 TCTTCTGTATCTGAATAGCCACCC 59.655 45.833 0.00 0.00 0.00 4.61
3444 3663 5.163405 TGTCTTCTGTATCTGAATAGCCACC 60.163 44.000 0.00 0.00 0.00 4.61
3445 3664 5.907207 TGTCTTCTGTATCTGAATAGCCAC 58.093 41.667 0.00 0.00 0.00 5.01
3446 3665 6.737720 ATGTCTTCTGTATCTGAATAGCCA 57.262 37.500 0.00 0.00 0.00 4.75
3447 3666 7.978975 GGATATGTCTTCTGTATCTGAATAGCC 59.021 40.741 0.00 0.00 0.00 3.93
3448 3667 7.978975 GGGATATGTCTTCTGTATCTGAATAGC 59.021 40.741 0.00 0.00 0.00 2.97
3449 3668 8.474025 GGGGATATGTCTTCTGTATCTGAATAG 58.526 40.741 0.00 0.00 0.00 1.73
3450 3669 7.400339 GGGGGATATGTCTTCTGTATCTGAATA 59.600 40.741 0.00 0.00 0.00 1.75
3451 3670 6.214412 GGGGGATATGTCTTCTGTATCTGAAT 59.786 42.308 0.00 0.00 0.00 2.57
3452 3671 5.544176 GGGGGATATGTCTTCTGTATCTGAA 59.456 44.000 0.00 0.00 0.00 3.02
3453 3672 5.087323 GGGGGATATGTCTTCTGTATCTGA 58.913 45.833 0.00 0.00 0.00 3.27
3454 3673 5.090139 AGGGGGATATGTCTTCTGTATCTG 58.910 45.833 0.00 0.00 0.00 2.90
3455 3674 5.361630 AGGGGGATATGTCTTCTGTATCT 57.638 43.478 0.00 0.00 0.00 1.98
3456 3675 5.544176 TGAAGGGGGATATGTCTTCTGTATC 59.456 44.000 0.00 0.00 37.21 2.24
3457 3676 5.308237 GTGAAGGGGGATATGTCTTCTGTAT 59.692 44.000 0.00 0.00 37.21 2.29
3458 3677 4.654262 GTGAAGGGGGATATGTCTTCTGTA 59.346 45.833 0.00 0.00 37.21 2.74
3459 3678 3.456277 GTGAAGGGGGATATGTCTTCTGT 59.544 47.826 0.00 0.00 37.21 3.41
3460 3679 3.455910 TGTGAAGGGGGATATGTCTTCTG 59.544 47.826 0.00 0.00 37.21 3.02
3461 3680 3.713764 CTGTGAAGGGGGATATGTCTTCT 59.286 47.826 0.00 0.00 37.21 2.85
3462 3681 3.745797 GCTGTGAAGGGGGATATGTCTTC 60.746 52.174 0.00 0.00 36.93 2.87
3463 3682 2.173569 GCTGTGAAGGGGGATATGTCTT 59.826 50.000 0.00 0.00 0.00 3.01
3464 3683 1.771255 GCTGTGAAGGGGGATATGTCT 59.229 52.381 0.00 0.00 0.00 3.41
3465 3684 1.490490 TGCTGTGAAGGGGGATATGTC 59.510 52.381 0.00 0.00 0.00 3.06
3466 3685 1.595311 TGCTGTGAAGGGGGATATGT 58.405 50.000 0.00 0.00 0.00 2.29
3467 3686 2.511659 CATGCTGTGAAGGGGGATATG 58.488 52.381 0.00 0.00 0.00 1.78
3468 3687 1.202976 GCATGCTGTGAAGGGGGATAT 60.203 52.381 11.37 0.00 0.00 1.63
3469 3688 0.183492 GCATGCTGTGAAGGGGGATA 59.817 55.000 11.37 0.00 0.00 2.59
3470 3689 1.076485 GCATGCTGTGAAGGGGGAT 60.076 57.895 11.37 0.00 0.00 3.85
3471 3690 2.356278 GCATGCTGTGAAGGGGGA 59.644 61.111 11.37 0.00 0.00 4.81
3472 3691 2.757099 GGCATGCTGTGAAGGGGG 60.757 66.667 18.92 0.00 0.00 5.40
3473 3692 2.036098 TGGCATGCTGTGAAGGGG 59.964 61.111 18.92 0.00 0.00 4.79
3474 3693 1.303888 AGTGGCATGCTGTGAAGGG 60.304 57.895 18.92 0.00 0.00 3.95
3475 3694 1.880894 CAGTGGCATGCTGTGAAGG 59.119 57.895 18.92 0.00 0.00 3.46
3476 3695 1.211969 GCAGTGGCATGCTGTGAAG 59.788 57.895 18.92 4.45 43.07 3.02
3477 3696 2.270257 GGCAGTGGCATGCTGTGAA 61.270 57.895 18.92 0.00 45.75 3.18
3478 3697 2.674033 GGCAGTGGCATGCTGTGA 60.674 61.111 18.92 0.00 45.75 3.58
3479 3698 2.986979 TGGCAGTGGCATGCTGTG 60.987 61.111 16.56 13.25 45.75 3.66
3480 3699 2.675423 CTGGCAGTGGCATGCTGT 60.675 61.111 20.91 0.00 45.75 4.40
3481 3700 4.129737 GCTGGCAGTGGCATGCTG 62.130 66.667 20.91 9.46 45.75 4.41
3482 3701 4.361971 AGCTGGCAGTGGCATGCT 62.362 61.111 26.61 26.61 45.75 3.79
3483 3702 4.129737 CAGCTGGCAGTGGCATGC 62.130 66.667 20.91 22.82 45.74 4.06
3484 3703 3.449227 CCAGCTGGCAGTGGCATG 61.449 66.667 22.33 15.97 43.71 4.06
3485 3704 4.753662 CCCAGCTGGCAGTGGCAT 62.754 66.667 28.39 2.98 43.71 4.40
3488 3707 4.729918 GGACCCAGCTGGCAGTGG 62.730 72.222 28.39 21.84 37.83 4.00
3489 3708 4.729918 GGGACCCAGCTGGCAGTG 62.730 72.222 28.39 16.10 37.83 3.66
3491 3710 4.729918 GTGGGACCCAGCTGGCAG 62.730 72.222 28.39 17.26 37.83 4.85
3493 3712 4.416738 GAGTGGGACCCAGCTGGC 62.417 72.222 28.39 14.68 37.83 4.85
3494 3713 0.982852 TATGAGTGGGACCCAGCTGG 60.983 60.000 26.87 26.87 41.37 4.85
3495 3714 0.467384 CTATGAGTGGGACCCAGCTG 59.533 60.000 15.52 6.78 32.34 4.24
3496 3715 0.339859 TCTATGAGTGGGACCCAGCT 59.660 55.000 15.52 14.31 32.34 4.24
3497 3716 0.755686 CTCTATGAGTGGGACCCAGC 59.244 60.000 15.52 10.07 32.34 4.85
3498 3717 2.166907 ACTCTATGAGTGGGACCCAG 57.833 55.000 15.52 0.25 41.76 4.45
3499 3718 2.187958 CAACTCTATGAGTGGGACCCA 58.812 52.381 9.95 9.95 42.59 4.51
3500 3719 1.134371 GCAACTCTATGAGTGGGACCC 60.134 57.143 2.45 2.45 42.59 4.46
3501 3720 1.134371 GGCAACTCTATGAGTGGGACC 60.134 57.143 0.67 0.00 42.59 4.46
3502 3721 1.555075 TGGCAACTCTATGAGTGGGAC 59.445 52.381 0.67 0.50 42.59 4.46
3503 3722 1.555075 GTGGCAACTCTATGAGTGGGA 59.445 52.381 0.67 0.00 42.59 4.37
3504 3723 1.407437 GGTGGCAACTCTATGAGTGGG 60.407 57.143 0.00 0.00 42.59 4.61
3505 3724 1.278985 TGGTGGCAACTCTATGAGTGG 59.721 52.381 3.27 0.00 42.59 4.00
3506 3725 2.768253 TGGTGGCAACTCTATGAGTG 57.232 50.000 3.27 0.00 42.59 3.51
3507 3726 3.788227 TTTGGTGGCAACTCTATGAGT 57.212 42.857 3.27 0.00 45.64 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.