Multiple sequence alignment - TraesCS4B01G255000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G255000 chr4B 100.000 4077 0 0 1 4077 520222408 520226484 0.000000e+00 7529.0
1 TraesCS4B01G255000 chr4B 95.000 40 1 1 56 94 487661787 487661748 1.220000e-05 62.1
2 TraesCS4B01G255000 chr4D 95.567 2301 64 19 1676 3971 423696292 423698559 0.000000e+00 3650.0
3 TraesCS4B01G255000 chr4D 85.564 1046 60 31 575 1582 423695245 423696237 0.000000e+00 1011.0
4 TraesCS4B01G255000 chr4D 91.071 112 4 4 440 547 423695043 423695152 3.280000e-31 147.0
5 TraesCS4B01G255000 chr4D 85.882 85 10 2 337 420 423694887 423694970 5.610000e-14 89.8
6 TraesCS4B01G255000 chr4A 95.058 2327 65 19 1675 3981 40444010 40441714 0.000000e+00 3615.0
7 TraesCS4B01G255000 chr4A 86.909 1016 44 31 435 1394 40445110 40444128 0.000000e+00 1057.0
8 TraesCS4B01G255000 chr4A 77.778 351 39 24 92 420 40445525 40445192 3.240000e-41 180.0
9 TraesCS4B01G255000 chr5B 89.216 816 83 3 2057 2870 38364554 38363742 0.000000e+00 1014.0
10 TraesCS4B01G255000 chr5B 95.556 45 1 1 56 99 26015371 26015327 2.030000e-08 71.3
11 TraesCS4B01G255000 chr1A 97.619 42 0 1 58 98 579834341 579834300 2.030000e-08 71.3
12 TraesCS4B01G255000 chrUn 97.561 41 0 1 56 95 50665307 50665347 7.310000e-08 69.4
13 TraesCS4B01G255000 chr7D 93.333 45 2 1 56 99 279257 279213 9.460000e-07 65.8
14 TraesCS4B01G255000 chr3A 95.000 40 1 1 56 94 308700599 308700638 1.220000e-05 62.1
15 TraesCS4B01G255000 chr3B 94.737 38 2 0 62 99 806726669 806726706 4.400000e-05 60.2
16 TraesCS4B01G255000 chr5A 100.000 28 0 0 72 99 413415519 413415492 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G255000 chr4B 520222408 520226484 4076 False 7529.000000 7529 100.000000 1 4077 1 chr4B.!!$F1 4076
1 TraesCS4B01G255000 chr4D 423694887 423698559 3672 False 1224.450000 3650 89.521000 337 3971 4 chr4D.!!$F1 3634
2 TraesCS4B01G255000 chr4A 40441714 40445525 3811 True 1617.333333 3615 86.581667 92 3981 3 chr4A.!!$R1 3889
3 TraesCS4B01G255000 chr5B 38363742 38364554 812 True 1014.000000 1014 89.216000 2057 2870 1 chr5B.!!$R2 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 1085 0.034960 GCCCTTCTCTTTCCCACCTC 60.035 60.0 0.0 0.0 0.00 3.85 F
1615 1834 0.034477 TCTTCGAAAAGGGGGATGCC 60.034 55.0 0.0 0.0 33.03 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2189 1.468520 GTTGCAGATAAGAAAGCCGCA 59.531 47.619 0.00 0.0 0.00 5.69 R
3491 3763 2.091333 ACCAAAGGGAAGCCTTCTCAAA 60.091 45.455 7.16 0.0 38.05 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.936759 TTAAATTTGACCATTTACTTTCATCCC 57.063 29.630 0.00 0.00 29.97 3.85
46 47 5.993748 TTTGACCATTTACTTTCATCCCC 57.006 39.130 0.00 0.00 0.00 4.81
47 48 4.666412 TGACCATTTACTTTCATCCCCA 57.334 40.909 0.00 0.00 0.00 4.96
48 49 4.340617 TGACCATTTACTTTCATCCCCAC 58.659 43.478 0.00 0.00 0.00 4.61
49 50 4.044065 TGACCATTTACTTTCATCCCCACT 59.956 41.667 0.00 0.00 0.00 4.00
50 51 5.010708 ACCATTTACTTTCATCCCCACTT 57.989 39.130 0.00 0.00 0.00 3.16
51 52 5.016831 ACCATTTACTTTCATCCCCACTTC 58.983 41.667 0.00 0.00 0.00 3.01
52 53 5.222337 ACCATTTACTTTCATCCCCACTTCT 60.222 40.000 0.00 0.00 0.00 2.85
53 54 6.011981 ACCATTTACTTTCATCCCCACTTCTA 60.012 38.462 0.00 0.00 0.00 2.10
54 55 6.889722 CCATTTACTTTCATCCCCACTTCTAA 59.110 38.462 0.00 0.00 0.00 2.10
55 56 7.396055 CCATTTACTTTCATCCCCACTTCTAAA 59.604 37.037 0.00 0.00 0.00 1.85
56 57 7.996098 TTTACTTTCATCCCCACTTCTAAAG 57.004 36.000 0.00 0.00 0.00 1.85
57 58 5.584551 ACTTTCATCCCCACTTCTAAAGT 57.415 39.130 0.00 0.00 44.06 2.66
88 89 5.487153 CGTCCTATATTATGAGACGGAGG 57.513 47.826 16.49 2.60 44.86 4.30
89 90 4.335874 CGTCCTATATTATGAGACGGAGGG 59.664 50.000 16.49 0.00 44.86 4.30
90 91 5.507637 GTCCTATATTATGAGACGGAGGGA 58.492 45.833 0.00 0.00 0.00 4.20
96 97 4.726035 TTATGAGACGGAGGGAGTAGAT 57.274 45.455 0.00 0.00 0.00 1.98
100 101 3.117474 TGAGACGGAGGGAGTAGATGAAT 60.117 47.826 0.00 0.00 0.00 2.57
103 104 3.759618 GACGGAGGGAGTAGATGAATAGG 59.240 52.174 0.00 0.00 0.00 2.57
112 113 6.271159 GGGAGTAGATGAATAGGAATCAGGTT 59.729 42.308 0.00 0.00 0.00 3.50
114 115 7.234577 GGAGTAGATGAATAGGAATCAGGTTCT 59.765 40.741 0.00 0.00 37.01 3.01
115 116 7.961351 AGTAGATGAATAGGAATCAGGTTCTG 58.039 38.462 0.00 0.00 37.01 3.02
125 126 3.593442 ATCAGGTTCTGGTTTTGTGGA 57.407 42.857 0.00 0.00 31.51 4.02
161 162 0.038166 GATGGTGCTGTCCCAGGAAA 59.962 55.000 0.00 0.00 32.80 3.13
167 168 2.365293 GTGCTGTCCCAGGAAATGTTTT 59.635 45.455 0.00 0.00 32.80 2.43
168 169 3.037549 TGCTGTCCCAGGAAATGTTTTT 58.962 40.909 0.00 0.00 31.21 1.94
169 170 4.038642 GTGCTGTCCCAGGAAATGTTTTTA 59.961 41.667 0.00 0.00 32.80 1.52
170 171 4.837860 TGCTGTCCCAGGAAATGTTTTTAT 59.162 37.500 0.00 0.00 31.21 1.40
172 173 6.495181 TGCTGTCCCAGGAAATGTTTTTATTA 59.505 34.615 0.00 0.00 31.21 0.98
173 174 7.015682 TGCTGTCCCAGGAAATGTTTTTATTAA 59.984 33.333 0.00 0.00 31.21 1.40
195 212 4.918810 TGAGGAAAAAGAAAGAAGTGGC 57.081 40.909 0.00 0.00 0.00 5.01
199 216 5.143369 AGGAAAAAGAAAGAAGTGGCTCAT 58.857 37.500 0.00 0.00 0.00 2.90
204 221 9.481340 GAAAAAGAAAGAAGTGGCTCATATTTT 57.519 29.630 0.00 0.00 0.00 1.82
210 227 3.838244 AGTGGCTCATATTTTCGCCTA 57.162 42.857 0.00 0.00 42.90 3.93
218 235 6.423042 GCTCATATTTTCGCCTACTTCTTTC 58.577 40.000 0.00 0.00 0.00 2.62
220 237 7.201652 GCTCATATTTTCGCCTACTTCTTTCTT 60.202 37.037 0.00 0.00 0.00 2.52
222 239 9.095065 TCATATTTTCGCCTACTTCTTTCTTAC 57.905 33.333 0.00 0.00 0.00 2.34
223 240 8.879759 CATATTTTCGCCTACTTCTTTCTTACA 58.120 33.333 0.00 0.00 0.00 2.41
224 241 6.780706 TTTTCGCCTACTTCTTTCTTACAG 57.219 37.500 0.00 0.00 0.00 2.74
226 243 6.579666 TTCGCCTACTTCTTTCTTACAGTA 57.420 37.500 0.00 0.00 0.00 2.74
227 244 5.947443 TCGCCTACTTCTTTCTTACAGTAC 58.053 41.667 0.00 0.00 0.00 2.73
228 245 5.100943 CGCCTACTTCTTTCTTACAGTACC 58.899 45.833 0.00 0.00 0.00 3.34
229 246 5.336213 CGCCTACTTCTTTCTTACAGTACCA 60.336 44.000 0.00 0.00 0.00 3.25
231 248 7.104290 GCCTACTTCTTTCTTACAGTACCATT 58.896 38.462 0.00 0.00 0.00 3.16
232 249 7.606839 GCCTACTTCTTTCTTACAGTACCATTT 59.393 37.037 0.00 0.00 0.00 2.32
243 260 8.137437 TCTTACAGTACCATTTAGTATTACGGC 58.863 37.037 0.00 0.00 0.00 5.68
244 261 6.475596 ACAGTACCATTTAGTATTACGGCT 57.524 37.500 0.00 0.00 0.00 5.52
245 262 6.278363 ACAGTACCATTTAGTATTACGGCTG 58.722 40.000 0.00 0.00 0.00 4.85
246 263 6.097270 ACAGTACCATTTAGTATTACGGCTGA 59.903 38.462 0.00 0.00 0.00 4.26
247 264 6.641314 CAGTACCATTTAGTATTACGGCTGAG 59.359 42.308 0.00 0.00 0.00 3.35
248 265 5.609533 ACCATTTAGTATTACGGCTGAGT 57.390 39.130 0.00 0.00 0.00 3.41
249 266 5.357257 ACCATTTAGTATTACGGCTGAGTG 58.643 41.667 0.00 0.00 0.00 3.51
250 267 5.128171 ACCATTTAGTATTACGGCTGAGTGA 59.872 40.000 0.00 0.00 0.00 3.41
251 268 5.692204 CCATTTAGTATTACGGCTGAGTGAG 59.308 44.000 0.00 0.00 0.00 3.51
252 269 4.913335 TTAGTATTACGGCTGAGTGAGG 57.087 45.455 0.00 0.00 0.00 3.86
260 277 6.510879 TTACGGCTGAGTGAGGTATATATG 57.489 41.667 0.00 0.00 0.00 1.78
262 279 5.567430 ACGGCTGAGTGAGGTATATATGTA 58.433 41.667 0.00 0.00 0.00 2.29
263 280 5.415077 ACGGCTGAGTGAGGTATATATGTAC 59.585 44.000 0.00 1.15 0.00 2.90
275 292 8.818141 AGGTATATATGTACATAATGCGATGC 57.182 34.615 19.11 10.66 0.00 3.91
280 297 2.993220 TGTACATAATGCGATGCGGATC 59.007 45.455 6.88 6.88 36.82 3.36
294 311 1.795286 GCGGATCGGAAATGTGATCTC 59.205 52.381 4.16 0.00 40.63 2.75
300 317 1.590238 CGGAAATGTGATCTCGCTGTC 59.410 52.381 0.00 0.00 0.00 3.51
302 319 3.489229 CGGAAATGTGATCTCGCTGTCTA 60.489 47.826 0.00 0.00 0.00 2.59
308 325 0.733729 GATCTCGCTGTCTACCGTGT 59.266 55.000 0.00 0.00 0.00 4.49
349 370 2.022195 GCATCATTCAGTGGCATCTGT 58.978 47.619 14.00 0.00 36.85 3.41
350 371 2.223502 GCATCATTCAGTGGCATCTGTG 60.224 50.000 14.00 8.36 36.85 3.66
379 400 4.217983 GTCCGGTACCAGAATATCTACCTG 59.782 50.000 13.54 0.00 0.00 4.00
380 401 3.056749 CCGGTACCAGAATATCTACCTGC 60.057 52.174 13.54 0.00 0.00 4.85
382 403 4.161102 GGTACCAGAATATCTACCTGCCT 58.839 47.826 7.15 0.00 0.00 4.75
384 405 4.696479 ACCAGAATATCTACCTGCCTTG 57.304 45.455 0.00 0.00 0.00 3.61
385 406 4.298626 ACCAGAATATCTACCTGCCTTGA 58.701 43.478 0.00 0.00 0.00 3.02
391 412 0.246635 TCTACCTGCCTTGAAGTCGC 59.753 55.000 0.00 0.00 0.00 5.19
393 414 0.037326 TACCTGCCTTGAAGTCGCTG 60.037 55.000 0.00 0.00 0.00 5.18
394 415 2.684843 CCTGCCTTGAAGTCGCTGC 61.685 63.158 0.00 0.00 0.00 5.25
455 543 2.042831 CCGGAAAGCTGGAGCAAGG 61.043 63.158 0.00 0.00 43.76 3.61
468 556 0.750911 AGCAAGGGATAAGCAGCAGC 60.751 55.000 0.00 0.00 42.56 5.25
694 856 3.961480 TCAGATGTGAACACCTACCTG 57.039 47.619 2.46 5.04 0.00 4.00
750 924 1.743958 ACATCCTCTGTTCTCGTACGG 59.256 52.381 16.52 6.42 32.90 4.02
852 1030 1.670295 CCCAAAGCAAAGCAACAAACC 59.330 47.619 0.00 0.00 0.00 3.27
853 1031 1.670295 CCAAAGCAAAGCAACAAACCC 59.330 47.619 0.00 0.00 0.00 4.11
855 1033 2.314323 AAGCAAAGCAACAAACCCAG 57.686 45.000 0.00 0.00 0.00 4.45
856 1034 0.465287 AGCAAAGCAACAAACCCAGG 59.535 50.000 0.00 0.00 0.00 4.45
857 1035 0.463620 GCAAAGCAACAAACCCAGGA 59.536 50.000 0.00 0.00 0.00 3.86
858 1036 1.538849 GCAAAGCAACAAACCCAGGAG 60.539 52.381 0.00 0.00 0.00 3.69
859 1037 1.069049 CAAAGCAACAAACCCAGGAGG 59.931 52.381 0.00 0.00 43.78 4.30
860 1038 1.115326 AAGCAACAAACCCAGGAGGC 61.115 55.000 0.00 0.00 40.58 4.70
861 1039 2.574018 GCAACAAACCCAGGAGGCC 61.574 63.158 0.00 0.00 40.58 5.19
862 1040 1.152567 CAACAAACCCAGGAGGCCA 60.153 57.895 5.01 0.00 40.58 5.36
863 1041 1.153756 AACAAACCCAGGAGGCCAG 59.846 57.895 5.01 0.00 40.58 4.85
866 1044 2.539081 AAACCCAGGAGGCCAGGAC 61.539 63.158 5.01 0.00 40.58 3.85
867 1045 3.810687 AACCCAGGAGGCCAGGACA 62.811 63.158 5.01 0.00 40.58 4.02
896 1084 1.842381 CGCCCTTCTCTTTCCCACCT 61.842 60.000 0.00 0.00 0.00 4.00
897 1085 0.034960 GCCCTTCTCTTTCCCACCTC 60.035 60.000 0.00 0.00 0.00 3.85
898 1086 1.362224 CCCTTCTCTTTCCCACCTCA 58.638 55.000 0.00 0.00 0.00 3.86
899 1087 1.003696 CCCTTCTCTTTCCCACCTCAC 59.996 57.143 0.00 0.00 0.00 3.51
900 1088 1.003696 CCTTCTCTTTCCCACCTCACC 59.996 57.143 0.00 0.00 0.00 4.02
901 1089 1.981495 CTTCTCTTTCCCACCTCACCT 59.019 52.381 0.00 0.00 0.00 4.00
902 1090 1.645710 TCTCTTTCCCACCTCACCTC 58.354 55.000 0.00 0.00 0.00 3.85
903 1091 0.615850 CTCTTTCCCACCTCACCTCC 59.384 60.000 0.00 0.00 0.00 4.30
904 1092 0.840722 TCTTTCCCACCTCACCTCCC 60.841 60.000 0.00 0.00 0.00 4.30
905 1093 1.073319 TTTCCCACCTCACCTCCCA 60.073 57.895 0.00 0.00 0.00 4.37
906 1094 1.423794 TTTCCCACCTCACCTCCCAC 61.424 60.000 0.00 0.00 0.00 4.61
907 1095 3.330720 CCCACCTCACCTCCCACC 61.331 72.222 0.00 0.00 0.00 4.61
946 1139 7.373617 AGGTTTTCTTCTCTTCTCTTCTCTT 57.626 36.000 0.00 0.00 0.00 2.85
947 1140 7.441836 AGGTTTTCTTCTCTTCTCTTCTCTTC 58.558 38.462 0.00 0.00 0.00 2.87
948 1141 7.290014 AGGTTTTCTTCTCTTCTCTTCTCTTCT 59.710 37.037 0.00 0.00 0.00 2.85
949 1142 7.598869 GGTTTTCTTCTCTTCTCTTCTCTTCTC 59.401 40.741 0.00 0.00 0.00 2.87
950 1143 8.360390 GTTTTCTTCTCTTCTCTTCTCTTCTCT 58.640 37.037 0.00 0.00 0.00 3.10
951 1144 8.477419 TTTCTTCTCTTCTCTTCTCTTCTCTT 57.523 34.615 0.00 0.00 0.00 2.85
952 1145 7.687941 TCTTCTCTTCTCTTCTCTTCTCTTC 57.312 40.000 0.00 0.00 0.00 2.87
953 1146 7.461749 TCTTCTCTTCTCTTCTCTTCTCTTCT 58.538 38.462 0.00 0.00 0.00 2.85
954 1147 7.607991 TCTTCTCTTCTCTTCTCTTCTCTTCTC 59.392 40.741 0.00 0.00 0.00 2.87
955 1148 7.020827 TCTCTTCTCTTCTCTTCTCTTCTCT 57.979 40.000 0.00 0.00 0.00 3.10
956 1149 7.106239 TCTCTTCTCTTCTCTTCTCTTCTCTC 58.894 42.308 0.00 0.00 0.00 3.20
957 1150 5.874810 TCTTCTCTTCTCTTCTCTTCTCTCG 59.125 44.000 0.00 0.00 0.00 4.04
958 1151 5.160607 TCTCTTCTCTTCTCTTCTCTCGT 57.839 43.478 0.00 0.00 0.00 4.18
986 1179 3.316760 GGAGGTTTCCCGTCCCGT 61.317 66.667 0.00 0.00 37.53 5.28
988 1181 2.203743 AGGTTTCCCGTCCCGTCT 60.204 61.111 0.00 0.00 35.12 4.18
1149 1357 5.121768 CGGTTCTTATGGATCTCGTTTTTGT 59.878 40.000 0.00 0.00 0.00 2.83
1150 1358 6.348213 CGGTTCTTATGGATCTCGTTTTTGTT 60.348 38.462 0.00 0.00 0.00 2.83
1151 1359 7.368059 GGTTCTTATGGATCTCGTTTTTGTTT 58.632 34.615 0.00 0.00 0.00 2.83
1152 1360 7.865889 GGTTCTTATGGATCTCGTTTTTGTTTT 59.134 33.333 0.00 0.00 0.00 2.43
1153 1361 8.902735 GTTCTTATGGATCTCGTTTTTGTTTTC 58.097 33.333 0.00 0.00 0.00 2.29
1154 1362 8.391075 TCTTATGGATCTCGTTTTTGTTTTCT 57.609 30.769 0.00 0.00 0.00 2.52
1159 1367 8.180317 TGGATCTCGTTTTTGTTTTCTTTTTC 57.820 30.769 0.00 0.00 0.00 2.29
1168 1376 9.381027 GTTTTTGTTTTCTTTTTCTTCCTGTTG 57.619 29.630 0.00 0.00 0.00 3.33
1360 1568 2.430942 CCTTACCGTTCGTGTCGCG 61.431 63.158 0.00 0.00 43.01 5.87
1384 1592 1.666234 GGATTGATCCGCTCGCCTC 60.666 63.158 0.00 0.00 37.19 4.70
1400 1611 3.815569 CTCGATCGGCGTCCTCTGC 62.816 68.421 16.41 0.00 41.80 4.26
1407 1618 2.264166 GCGTCCTCTGCTTCTGCT 59.736 61.111 0.00 0.00 40.48 4.24
1427 1638 5.381757 TGCTTGGGTTGTTAGATTTGTACT 58.618 37.500 0.00 0.00 0.00 2.73
1432 1643 9.226606 CTTGGGTTGTTAGATTTGTACTATCAA 57.773 33.333 10.02 0.00 31.48 2.57
1449 1660 5.707298 ACTATCAAGGTCAATTGGTGAAGTG 59.293 40.000 5.42 0.00 38.23 3.16
1453 1665 4.431416 AGGTCAATTGGTGAAGTGTACA 57.569 40.909 5.42 0.00 38.23 2.90
1466 1678 3.295585 AGTGTACATGGCATGGCATAA 57.704 42.857 31.77 20.80 33.60 1.90
1468 1680 3.381272 AGTGTACATGGCATGGCATAAAC 59.619 43.478 31.77 28.66 33.60 2.01
1485 1697 5.912396 GCATAAACGTTGACTGTTCATGAAA 59.088 36.000 10.35 0.06 28.19 2.69
1489 1701 5.095691 ACGTTGACTGTTCATGAAACATC 57.904 39.130 10.35 8.27 46.53 3.06
1490 1702 4.574421 ACGTTGACTGTTCATGAAACATCA 59.426 37.500 10.35 10.76 46.53 3.07
1496 1708 8.578308 TGACTGTTCATGAAACATCATTTTTC 57.422 30.769 10.35 0.00 46.53 2.29
1497 1709 8.196103 TGACTGTTCATGAAACATCATTTTTCA 58.804 29.630 10.35 1.44 46.53 2.69
1498 1710 8.356533 ACTGTTCATGAAACATCATTTTTCAC 57.643 30.769 10.35 0.00 46.53 3.18
1500 1712 8.355272 TGTTCATGAAACATCATTTTTCACAG 57.645 30.769 10.35 0.00 43.84 3.66
1513 1725 5.384063 TTTTTCACAGTTGCTCTGAAACA 57.616 34.783 14.40 0.00 46.27 2.83
1516 1728 5.929697 TTCACAGTTGCTCTGAAACATAG 57.070 39.130 14.40 0.00 46.27 2.23
1517 1729 3.748048 TCACAGTTGCTCTGAAACATAGC 59.252 43.478 14.40 0.00 46.27 2.97
1518 1730 3.499537 CACAGTTGCTCTGAAACATAGCA 59.500 43.478 14.40 7.53 46.27 3.49
1519 1731 3.499918 ACAGTTGCTCTGAAACATAGCAC 59.500 43.478 14.40 7.20 41.87 4.40
1522 1734 5.583854 CAGTTGCTCTGAAACATAGCACTAT 59.416 40.000 10.44 0.00 41.87 2.12
1545 1757 6.323203 TGATTTCTTTCCTTTCTTCTGCTG 57.677 37.500 0.00 0.00 0.00 4.41
1552 1764 4.955811 TCCTTTCTTCTGCTGACAAGTA 57.044 40.909 0.00 0.00 0.00 2.24
1575 1794 3.961480 TGTGTACTGCTTAGACTGCAT 57.039 42.857 0.00 0.00 39.86 3.96
1576 1795 4.271696 TGTGTACTGCTTAGACTGCATT 57.728 40.909 0.00 0.00 39.86 3.56
1577 1796 4.641396 TGTGTACTGCTTAGACTGCATTT 58.359 39.130 0.00 0.00 39.86 2.32
1578 1797 5.789521 TGTGTACTGCTTAGACTGCATTTA 58.210 37.500 0.00 0.00 39.86 1.40
1579 1798 6.406370 TGTGTACTGCTTAGACTGCATTTAT 58.594 36.000 0.00 0.00 39.86 1.40
1580 1799 6.313658 TGTGTACTGCTTAGACTGCATTTATG 59.686 38.462 0.00 0.00 39.86 1.90
1581 1800 6.313905 GTGTACTGCTTAGACTGCATTTATGT 59.686 38.462 0.00 0.00 39.86 2.29
1582 1801 6.878923 TGTACTGCTTAGACTGCATTTATGTT 59.121 34.615 0.00 0.00 39.86 2.71
1583 1802 6.824305 ACTGCTTAGACTGCATTTATGTTT 57.176 33.333 0.00 0.00 39.86 2.83
1584 1803 7.219484 ACTGCTTAGACTGCATTTATGTTTT 57.781 32.000 0.00 0.00 39.86 2.43
1585 1804 7.661040 ACTGCTTAGACTGCATTTATGTTTTT 58.339 30.769 0.00 0.00 39.86 1.94
1613 1832 4.864704 TTTTTCTTCGAAAAGGGGGATG 57.135 40.909 0.00 0.00 33.03 3.51
1614 1833 1.834188 TTCTTCGAAAAGGGGGATGC 58.166 50.000 0.00 0.00 33.03 3.91
1615 1834 0.034477 TCTTCGAAAAGGGGGATGCC 60.034 55.000 0.00 0.00 33.03 4.40
1616 1835 1.000145 TTCGAAAAGGGGGATGCCC 60.000 57.895 15.35 15.35 44.51 5.36
1631 1850 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
1632 1851 3.790437 CCCGGCCTCTGCATCAGT 61.790 66.667 0.00 0.00 40.13 3.41
1633 1852 2.434843 CCCGGCCTCTGCATCAGTA 61.435 63.158 0.00 0.00 40.13 2.74
1634 1853 1.068753 CCGGCCTCTGCATCAGTAG 59.931 63.158 0.00 0.00 40.13 2.57
1635 1854 1.395045 CCGGCCTCTGCATCAGTAGA 61.395 60.000 0.00 0.00 40.13 2.59
1636 1855 0.249238 CGGCCTCTGCATCAGTAGAC 60.249 60.000 0.00 0.00 40.13 2.59
1637 1856 1.118838 GGCCTCTGCATCAGTAGACT 58.881 55.000 0.00 0.00 40.13 3.24
1638 1857 1.202510 GGCCTCTGCATCAGTAGACTG 60.203 57.143 3.12 3.12 41.59 3.51
1639 1858 1.805871 GCCTCTGCATCAGTAGACTGC 60.806 57.143 4.72 0.00 39.56 4.40
1640 1859 1.755959 CCTCTGCATCAGTAGACTGCT 59.244 52.381 4.72 0.00 43.46 4.24
1641 1860 2.168106 CCTCTGCATCAGTAGACTGCTT 59.832 50.000 4.72 0.00 43.46 3.91
1642 1861 3.188492 CTCTGCATCAGTAGACTGCTTG 58.812 50.000 4.72 6.47 43.46 4.01
1664 1883 5.242434 TGTTTATGTAGATGTGGGTGTGAC 58.758 41.667 0.00 0.00 0.00 3.67
1667 1886 6.860790 TTATGTAGATGTGGGTGTGACTAA 57.139 37.500 0.00 0.00 0.00 2.24
1670 1889 3.963428 AGATGTGGGTGTGACTAAGAC 57.037 47.619 0.00 0.00 0.00 3.01
1672 1891 0.677288 TGTGGGTGTGACTAAGACGG 59.323 55.000 0.00 0.00 0.00 4.79
1673 1892 0.677842 GTGGGTGTGACTAAGACGGT 59.322 55.000 0.00 0.00 0.00 4.83
1708 1957 3.209410 ACAAGTGCCTTCAACTCAGAAG 58.791 45.455 0.00 0.00 43.60 2.85
1883 2132 0.740149 TGAATGCATCCAATGTCGCC 59.260 50.000 0.00 0.00 0.00 5.54
1919 2168 3.128242 CACTGAGCTGGATTCATTTGGAC 59.872 47.826 0.00 0.00 0.00 4.02
2015 2264 2.497138 CCATCTGCTGGCGATATTCAA 58.503 47.619 0.00 0.00 38.47 2.69
2298 2547 1.815003 CCTTGAAACCTAAGCCTGCAG 59.185 52.381 6.78 6.78 0.00 4.41
2723 2975 7.781056 TCTTTGTTTTGTTCTATTCCTTGCTT 58.219 30.769 0.00 0.00 0.00 3.91
2836 3089 0.171007 CATTGCGCCCTAAGTTGGTG 59.829 55.000 4.18 0.00 36.44 4.17
2858 3111 4.282195 TGTTTTATTCCACATTCCACCACC 59.718 41.667 0.00 0.00 0.00 4.61
2863 3116 1.031571 CCACATTCCACCACCCATCG 61.032 60.000 0.00 0.00 0.00 3.84
2883 3136 6.811170 CCATCGCAATACCAGTTTAATGTTTT 59.189 34.615 0.00 0.00 0.00 2.43
2988 3241 8.812513 AAGTGATGACTTGATCCAATCATAAA 57.187 30.769 0.00 0.00 41.12 1.40
3227 3494 8.995220 CCACATTGAAACAAATGAAGAATGATT 58.005 29.630 4.04 0.00 39.46 2.57
3491 3763 2.982488 CCTATGGGGCCTTACTTGAGAT 59.018 50.000 0.84 0.00 0.00 2.75
3648 3920 5.071923 ACCTAAACAACAGAGTTAGAGGCTT 59.928 40.000 0.00 0.00 37.86 4.35
3729 4001 9.284968 GGTGCTAATAGGCTTTTGATAATTCTA 57.715 33.333 0.00 0.00 0.00 2.10
3810 4082 3.831333 CTGGCATCTCTAGCTCCTGATTA 59.169 47.826 0.00 0.00 0.00 1.75
3811 4083 4.423913 TGGCATCTCTAGCTCCTGATTAT 58.576 43.478 0.00 0.00 0.00 1.28
3812 4084 4.842948 TGGCATCTCTAGCTCCTGATTATT 59.157 41.667 0.00 0.00 0.00 1.40
3821 4093 4.160329 AGCTCCTGATTATTATCCACGGA 58.840 43.478 0.00 0.00 0.00 4.69
3827 4099 5.241403 TGATTATTATCCACGGATGCCTT 57.759 39.130 8.91 0.00 36.17 4.35
3871 4143 6.073003 CCCTGTTGACTGAGTTAACTGAATTC 60.073 42.308 22.44 4.70 34.65 2.17
3877 4149 7.957002 TGACTGAGTTAACTGAATTCTCTCTT 58.043 34.615 14.14 0.00 0.00 2.85
3878 4150 8.085296 TGACTGAGTTAACTGAATTCTCTCTTC 58.915 37.037 14.14 0.00 0.00 2.87
3879 4151 7.382898 ACTGAGTTAACTGAATTCTCTCTTCC 58.617 38.462 14.14 0.00 0.00 3.46
3880 4152 6.702329 TGAGTTAACTGAATTCTCTCTTCCC 58.298 40.000 14.14 0.00 0.00 3.97
3881 4153 6.270000 TGAGTTAACTGAATTCTCTCTTCCCA 59.730 38.462 14.14 0.00 0.00 4.37
3882 4154 7.038017 TGAGTTAACTGAATTCTCTCTTCCCAT 60.038 37.037 14.14 0.00 0.00 4.00
3962 4236 3.779759 TGTCAAACCTTTTGATGTGCAC 58.220 40.909 10.75 10.75 0.00 4.57
3982 4256 6.980593 TGCACTCAAGCACATTAAATAAACT 58.019 32.000 0.00 0.00 40.11 2.66
3983 4257 7.432869 TGCACTCAAGCACATTAAATAAACTT 58.567 30.769 0.00 0.00 40.11 2.66
3984 4258 7.381948 TGCACTCAAGCACATTAAATAAACTTG 59.618 33.333 0.00 0.00 40.11 3.16
3985 4259 7.382218 GCACTCAAGCACATTAAATAAACTTGT 59.618 33.333 0.00 0.00 35.64 3.16
3986 4260 8.693504 CACTCAAGCACATTAAATAAACTTGTG 58.306 33.333 0.00 0.00 40.42 3.33
3987 4261 7.867403 ACTCAAGCACATTAAATAAACTTGTGG 59.133 33.333 5.52 0.00 38.44 4.17
4000 4274 9.719355 AAATAAACTTGTGGTTAATCATTTCCC 57.281 29.630 0.00 0.00 37.12 3.97
4001 4275 5.385509 AACTTGTGGTTAATCATTTCCCG 57.614 39.130 0.00 0.00 36.23 5.14
4002 4276 3.192633 ACTTGTGGTTAATCATTTCCCGC 59.807 43.478 0.00 0.00 0.00 6.13
4003 4277 2.796557 TGTGGTTAATCATTTCCCGCA 58.203 42.857 0.00 0.00 33.55 5.69
4004 4278 2.490115 TGTGGTTAATCATTTCCCGCAC 59.510 45.455 0.00 0.00 31.14 5.34
4005 4279 2.752903 GTGGTTAATCATTTCCCGCACT 59.247 45.455 0.00 0.00 0.00 4.40
4006 4280 3.192633 GTGGTTAATCATTTCCCGCACTT 59.807 43.478 0.00 0.00 0.00 3.16
4007 4281 3.442273 TGGTTAATCATTTCCCGCACTTC 59.558 43.478 0.00 0.00 0.00 3.01
4008 4282 3.442273 GGTTAATCATTTCCCGCACTTCA 59.558 43.478 0.00 0.00 0.00 3.02
4009 4283 4.412207 GTTAATCATTTCCCGCACTTCAC 58.588 43.478 0.00 0.00 0.00 3.18
4010 4284 2.496899 ATCATTTCCCGCACTTCACT 57.503 45.000 0.00 0.00 0.00 3.41
4011 4285 2.270352 TCATTTCCCGCACTTCACTT 57.730 45.000 0.00 0.00 0.00 3.16
4012 4286 2.582052 TCATTTCCCGCACTTCACTTT 58.418 42.857 0.00 0.00 0.00 2.66
4013 4287 2.293122 TCATTTCCCGCACTTCACTTTG 59.707 45.455 0.00 0.00 0.00 2.77
4014 4288 0.383949 TTTCCCGCACTTCACTTTGC 59.616 50.000 0.00 0.00 35.26 3.68
4015 4289 0.465460 TTCCCGCACTTCACTTTGCT 60.465 50.000 0.00 0.00 36.54 3.91
4016 4290 0.465460 TCCCGCACTTCACTTTGCTT 60.465 50.000 0.00 0.00 36.54 3.91
4017 4291 0.385390 CCCGCACTTCACTTTGCTTT 59.615 50.000 0.00 0.00 36.54 3.51
4018 4292 1.480205 CCGCACTTCACTTTGCTTTG 58.520 50.000 0.00 0.00 36.54 2.77
4019 4293 1.202290 CCGCACTTCACTTTGCTTTGT 60.202 47.619 0.00 0.00 36.54 2.83
4020 4294 2.032799 CCGCACTTCACTTTGCTTTGTA 59.967 45.455 0.00 0.00 36.54 2.41
4021 4295 3.304659 CCGCACTTCACTTTGCTTTGTAT 60.305 43.478 0.00 0.00 36.54 2.29
4022 4296 3.665409 CGCACTTCACTTTGCTTTGTATG 59.335 43.478 0.00 0.00 36.54 2.39
4023 4297 3.426525 GCACTTCACTTTGCTTTGTATGC 59.573 43.478 0.00 0.00 35.74 3.14
4024 4298 4.794003 GCACTTCACTTTGCTTTGTATGCT 60.794 41.667 0.00 0.00 35.74 3.79
4025 4299 5.284079 CACTTCACTTTGCTTTGTATGCTT 58.716 37.500 0.00 0.00 0.00 3.91
4026 4300 5.174398 CACTTCACTTTGCTTTGTATGCTTG 59.826 40.000 0.00 0.00 0.00 4.01
4027 4301 4.916983 TCACTTTGCTTTGTATGCTTGT 57.083 36.364 0.00 0.00 0.00 3.16
4028 4302 4.609947 TCACTTTGCTTTGTATGCTTGTG 58.390 39.130 0.00 0.00 0.00 3.33
4029 4303 3.737266 CACTTTGCTTTGTATGCTTGTGG 59.263 43.478 0.00 0.00 0.00 4.17
4030 4304 3.243839 ACTTTGCTTTGTATGCTTGTGGG 60.244 43.478 0.00 0.00 0.00 4.61
4031 4305 0.602562 TGCTTTGTATGCTTGTGGGC 59.397 50.000 0.00 0.00 0.00 5.36
4032 4306 0.890683 GCTTTGTATGCTTGTGGGCT 59.109 50.000 0.00 0.00 0.00 5.19
4033 4307 1.273327 GCTTTGTATGCTTGTGGGCTT 59.727 47.619 0.00 0.00 0.00 4.35
4034 4308 2.289010 GCTTTGTATGCTTGTGGGCTTT 60.289 45.455 0.00 0.00 0.00 3.51
4035 4309 3.578688 CTTTGTATGCTTGTGGGCTTTC 58.421 45.455 0.00 0.00 0.00 2.62
4036 4310 2.584835 TGTATGCTTGTGGGCTTTCT 57.415 45.000 0.00 0.00 0.00 2.52
4037 4311 3.712016 TGTATGCTTGTGGGCTTTCTA 57.288 42.857 0.00 0.00 0.00 2.10
4038 4312 4.027674 TGTATGCTTGTGGGCTTTCTAA 57.972 40.909 0.00 0.00 0.00 2.10
4039 4313 4.599041 TGTATGCTTGTGGGCTTTCTAAT 58.401 39.130 0.00 0.00 0.00 1.73
4040 4314 5.016173 TGTATGCTTGTGGGCTTTCTAATT 58.984 37.500 0.00 0.00 0.00 1.40
4041 4315 6.184068 TGTATGCTTGTGGGCTTTCTAATTA 58.816 36.000 0.00 0.00 0.00 1.40
4042 4316 5.841957 ATGCTTGTGGGCTTTCTAATTAG 57.158 39.130 6.11 6.11 0.00 1.73
4043 4317 4.917385 TGCTTGTGGGCTTTCTAATTAGA 58.083 39.130 11.24 11.24 0.00 2.10
4044 4318 5.509498 TGCTTGTGGGCTTTCTAATTAGAT 58.491 37.500 15.82 0.00 31.40 1.98
4045 4319 5.951747 TGCTTGTGGGCTTTCTAATTAGATT 59.048 36.000 15.82 0.00 31.40 2.40
4046 4320 7.116075 TGCTTGTGGGCTTTCTAATTAGATTA 58.884 34.615 15.82 6.80 31.40 1.75
4047 4321 7.779798 TGCTTGTGGGCTTTCTAATTAGATTAT 59.220 33.333 15.82 0.00 31.40 1.28
4048 4322 8.633561 GCTTGTGGGCTTTCTAATTAGATTATT 58.366 33.333 15.82 0.00 31.40 1.40
4049 4323 9.956720 CTTGTGGGCTTTCTAATTAGATTATTG 57.043 33.333 15.82 6.26 31.40 1.90
4050 4324 7.940850 TGTGGGCTTTCTAATTAGATTATTGC 58.059 34.615 15.82 13.98 31.40 3.56
4051 4325 7.014230 TGTGGGCTTTCTAATTAGATTATTGCC 59.986 37.037 15.82 20.15 35.24 4.52
4052 4326 7.231519 GTGGGCTTTCTAATTAGATTATTGCCT 59.768 37.037 25.80 0.00 36.15 4.75
4053 4327 8.444783 TGGGCTTTCTAATTAGATTATTGCCTA 58.555 33.333 25.80 22.00 36.15 3.93
4054 4328 8.951243 GGGCTTTCTAATTAGATTATTGCCTAG 58.049 37.037 25.80 12.97 36.15 3.02
4055 4329 8.454894 GGCTTTCTAATTAGATTATTGCCTAGC 58.545 37.037 22.92 16.44 33.45 3.42
4056 4330 9.225436 GCTTTCTAATTAGATTATTGCCTAGCT 57.775 33.333 15.82 0.00 31.40 3.32
4064 4338 6.625873 AGATTATTGCCTAGCTTACTTTGC 57.374 37.500 0.00 0.00 0.00 3.68
4065 4339 6.360618 AGATTATTGCCTAGCTTACTTTGCT 58.639 36.000 0.00 0.00 43.79 3.91
4066 4340 6.830838 AGATTATTGCCTAGCTTACTTTGCTT 59.169 34.615 0.00 0.00 41.46 3.91
4067 4341 6.834168 TTATTGCCTAGCTTACTTTGCTTT 57.166 33.333 0.00 0.00 41.46 3.51
4068 4342 4.503741 TTGCCTAGCTTACTTTGCTTTG 57.496 40.909 0.00 0.00 41.46 2.77
4069 4343 3.750371 TGCCTAGCTTACTTTGCTTTGA 58.250 40.909 0.00 0.00 41.46 2.69
4070 4344 3.753272 TGCCTAGCTTACTTTGCTTTGAG 59.247 43.478 0.00 0.00 41.46 3.02
4071 4345 4.003648 GCCTAGCTTACTTTGCTTTGAGA 58.996 43.478 0.00 0.00 41.46 3.27
4072 4346 4.637977 GCCTAGCTTACTTTGCTTTGAGAT 59.362 41.667 0.00 0.00 41.46 2.75
4073 4347 5.124617 GCCTAGCTTACTTTGCTTTGAGATT 59.875 40.000 0.00 0.00 41.46 2.40
4074 4348 6.549952 CCTAGCTTACTTTGCTTTGAGATTG 58.450 40.000 0.00 0.00 41.46 2.67
4075 4349 4.802999 AGCTTACTTTGCTTTGAGATTGC 58.197 39.130 0.00 0.00 37.52 3.56
4076 4350 4.522022 AGCTTACTTTGCTTTGAGATTGCT 59.478 37.500 0.00 0.00 37.52 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.936759 GGGATGAAAGTAAATGGTCAAATTTAA 57.063 29.630 0.00 0.00 34.61 1.52
20 21 8.536175 GGGGATGAAAGTAAATGGTCAAATTTA 58.464 33.333 0.00 0.00 32.16 1.40
21 22 7.017056 TGGGGATGAAAGTAAATGGTCAAATTT 59.983 33.333 0.00 0.00 34.24 1.82
22 23 6.500049 TGGGGATGAAAGTAAATGGTCAAATT 59.500 34.615 0.00 0.00 0.00 1.82
23 24 6.022315 TGGGGATGAAAGTAAATGGTCAAAT 58.978 36.000 0.00 0.00 0.00 2.32
24 25 5.245075 GTGGGGATGAAAGTAAATGGTCAAA 59.755 40.000 0.00 0.00 0.00 2.69
25 26 4.770010 GTGGGGATGAAAGTAAATGGTCAA 59.230 41.667 0.00 0.00 0.00 3.18
26 27 4.044065 AGTGGGGATGAAAGTAAATGGTCA 59.956 41.667 0.00 0.00 0.00 4.02
27 28 4.600062 AGTGGGGATGAAAGTAAATGGTC 58.400 43.478 0.00 0.00 0.00 4.02
28 29 4.675063 AGTGGGGATGAAAGTAAATGGT 57.325 40.909 0.00 0.00 0.00 3.55
29 30 5.264395 AGAAGTGGGGATGAAAGTAAATGG 58.736 41.667 0.00 0.00 0.00 3.16
30 31 7.938140 TTAGAAGTGGGGATGAAAGTAAATG 57.062 36.000 0.00 0.00 0.00 2.32
31 32 8.170730 ACTTTAGAAGTGGGGATGAAAGTAAAT 58.829 33.333 0.00 0.00 41.01 1.40
32 33 7.523415 ACTTTAGAAGTGGGGATGAAAGTAAA 58.477 34.615 0.00 0.00 41.01 2.01
33 34 7.086685 ACTTTAGAAGTGGGGATGAAAGTAA 57.913 36.000 0.00 0.00 41.01 2.24
34 35 6.697641 ACTTTAGAAGTGGGGATGAAAGTA 57.302 37.500 0.00 0.00 41.01 2.24
35 36 5.584551 ACTTTAGAAGTGGGGATGAAAGT 57.415 39.130 0.00 0.00 41.01 2.66
61 62 7.719483 TCCGTCTCATAATATAGGACGTTTTT 58.281 34.615 18.37 0.00 45.22 1.94
62 63 7.281040 TCCGTCTCATAATATAGGACGTTTT 57.719 36.000 18.37 0.00 45.22 2.43
63 64 6.072064 CCTCCGTCTCATAATATAGGACGTTT 60.072 42.308 18.37 0.00 45.22 3.60
64 65 5.415077 CCTCCGTCTCATAATATAGGACGTT 59.585 44.000 18.37 0.00 45.22 3.99
65 66 4.942483 CCTCCGTCTCATAATATAGGACGT 59.058 45.833 18.37 0.00 45.22 4.34
66 67 4.335874 CCCTCCGTCTCATAATATAGGACG 59.664 50.000 15.24 15.24 45.92 4.79
67 68 5.507637 TCCCTCCGTCTCATAATATAGGAC 58.492 45.833 0.00 0.00 0.00 3.85
68 69 5.253330 ACTCCCTCCGTCTCATAATATAGGA 59.747 44.000 0.00 0.00 0.00 2.94
69 70 5.511363 ACTCCCTCCGTCTCATAATATAGG 58.489 45.833 0.00 0.00 0.00 2.57
70 71 7.566569 TCTACTCCCTCCGTCTCATAATATAG 58.433 42.308 0.00 0.00 0.00 1.31
71 72 7.506361 TCTACTCCCTCCGTCTCATAATATA 57.494 40.000 0.00 0.00 0.00 0.86
72 73 6.390048 TCTACTCCCTCCGTCTCATAATAT 57.610 41.667 0.00 0.00 0.00 1.28
73 74 5.837770 TCTACTCCCTCCGTCTCATAATA 57.162 43.478 0.00 0.00 0.00 0.98
74 75 4.726035 TCTACTCCCTCCGTCTCATAAT 57.274 45.455 0.00 0.00 0.00 1.28
75 76 4.104261 TCATCTACTCCCTCCGTCTCATAA 59.896 45.833 0.00 0.00 0.00 1.90
76 77 3.651423 TCATCTACTCCCTCCGTCTCATA 59.349 47.826 0.00 0.00 0.00 2.15
77 78 2.443632 TCATCTACTCCCTCCGTCTCAT 59.556 50.000 0.00 0.00 0.00 2.90
78 79 1.844497 TCATCTACTCCCTCCGTCTCA 59.156 52.381 0.00 0.00 0.00 3.27
79 80 2.642154 TCATCTACTCCCTCCGTCTC 57.358 55.000 0.00 0.00 0.00 3.36
80 81 3.603965 ATTCATCTACTCCCTCCGTCT 57.396 47.619 0.00 0.00 0.00 4.18
81 82 3.759618 CCTATTCATCTACTCCCTCCGTC 59.240 52.174 0.00 0.00 0.00 4.79
82 83 3.398292 TCCTATTCATCTACTCCCTCCGT 59.602 47.826 0.00 0.00 0.00 4.69
83 84 4.035612 TCCTATTCATCTACTCCCTCCG 57.964 50.000 0.00 0.00 0.00 4.63
84 85 6.019748 TGATTCCTATTCATCTACTCCCTCC 58.980 44.000 0.00 0.00 0.00 4.30
85 86 6.154363 CCTGATTCCTATTCATCTACTCCCTC 59.846 46.154 0.00 0.00 0.00 4.30
86 87 6.022315 CCTGATTCCTATTCATCTACTCCCT 58.978 44.000 0.00 0.00 0.00 4.20
87 88 5.782845 ACCTGATTCCTATTCATCTACTCCC 59.217 44.000 0.00 0.00 0.00 4.30
88 89 6.926630 ACCTGATTCCTATTCATCTACTCC 57.073 41.667 0.00 0.00 0.00 3.85
89 90 8.087750 CAGAACCTGATTCCTATTCATCTACTC 58.912 40.741 0.00 0.00 38.16 2.59
90 91 7.016072 CCAGAACCTGATTCCTATTCATCTACT 59.984 40.741 0.00 0.00 38.16 2.57
96 97 5.779241 AACCAGAACCTGATTCCTATTCA 57.221 39.130 0.00 0.00 38.16 2.57
100 101 5.070001 CACAAAACCAGAACCTGATTCCTA 58.930 41.667 0.00 0.00 38.16 2.94
103 104 3.888930 TCCACAAAACCAGAACCTGATTC 59.111 43.478 0.00 0.00 37.62 2.52
112 113 2.777692 AGGAAGACTCCACAAAACCAGA 59.222 45.455 0.00 0.00 45.24 3.86
114 115 2.241176 ACAGGAAGACTCCACAAAACCA 59.759 45.455 0.00 0.00 45.24 3.67
115 116 2.932261 ACAGGAAGACTCCACAAAACC 58.068 47.619 0.00 0.00 45.24 3.27
125 126 2.224867 CCATCCCAACAACAGGAAGACT 60.225 50.000 0.00 0.00 35.30 3.24
169 170 8.090831 GCCACTTCTTTCTTTTTCCTCATTAAT 58.909 33.333 0.00 0.00 0.00 1.40
170 171 7.287696 AGCCACTTCTTTCTTTTTCCTCATTAA 59.712 33.333 0.00 0.00 0.00 1.40
172 173 5.600069 AGCCACTTCTTTCTTTTTCCTCATT 59.400 36.000 0.00 0.00 0.00 2.57
173 174 5.143369 AGCCACTTCTTTCTTTTTCCTCAT 58.857 37.500 0.00 0.00 0.00 2.90
183 200 5.163713 GCGAAAATATGAGCCACTTCTTTCT 60.164 40.000 0.00 0.00 0.00 2.52
185 202 4.986622 GCGAAAATATGAGCCACTTCTTT 58.013 39.130 0.00 0.00 0.00 2.52
195 212 7.778470 AGAAAGAAGTAGGCGAAAATATGAG 57.222 36.000 0.00 0.00 0.00 2.90
199 216 8.092687 ACTGTAAGAAAGAAGTAGGCGAAAATA 58.907 33.333 0.00 0.00 37.43 1.40
204 221 5.105997 GGTACTGTAAGAAAGAAGTAGGCGA 60.106 44.000 0.00 0.00 37.43 5.54
218 235 8.139989 AGCCGTAATACTAAATGGTACTGTAAG 58.860 37.037 0.00 0.00 42.29 2.34
220 237 7.285172 TCAGCCGTAATACTAAATGGTACTGTA 59.715 37.037 0.00 0.00 0.00 2.74
222 239 6.509656 TCAGCCGTAATACTAAATGGTACTG 58.490 40.000 0.00 0.00 0.00 2.74
223 240 6.323225 ACTCAGCCGTAATACTAAATGGTACT 59.677 38.462 0.00 0.00 0.00 2.73
224 241 6.420008 CACTCAGCCGTAATACTAAATGGTAC 59.580 42.308 0.00 0.00 0.00 3.34
226 243 5.128171 TCACTCAGCCGTAATACTAAATGGT 59.872 40.000 0.00 0.00 0.00 3.55
227 244 5.597806 TCACTCAGCCGTAATACTAAATGG 58.402 41.667 0.00 0.00 0.00 3.16
228 245 5.692204 CCTCACTCAGCCGTAATACTAAATG 59.308 44.000 0.00 0.00 0.00 2.32
229 246 5.363005 ACCTCACTCAGCCGTAATACTAAAT 59.637 40.000 0.00 0.00 0.00 1.40
231 248 4.275810 ACCTCACTCAGCCGTAATACTAA 58.724 43.478 0.00 0.00 0.00 2.24
232 249 3.894759 ACCTCACTCAGCCGTAATACTA 58.105 45.455 0.00 0.00 0.00 1.82
236 253 6.663953 ACATATATACCTCACTCAGCCGTAAT 59.336 38.462 0.00 0.00 0.00 1.89
237 254 6.008331 ACATATATACCTCACTCAGCCGTAA 58.992 40.000 0.00 0.00 0.00 3.18
238 255 5.567430 ACATATATACCTCACTCAGCCGTA 58.433 41.667 0.00 0.00 0.00 4.02
239 256 4.408276 ACATATATACCTCACTCAGCCGT 58.592 43.478 0.00 0.00 0.00 5.68
240 257 5.414765 TGTACATATATACCTCACTCAGCCG 59.585 44.000 0.00 0.00 0.00 5.52
241 258 6.835819 TGTACATATATACCTCACTCAGCC 57.164 41.667 0.00 0.00 0.00 4.85
245 262 9.452065 CGCATTATGTACATATATACCTCACTC 57.548 37.037 16.16 0.00 0.00 3.51
246 263 9.185680 TCGCATTATGTACATATATACCTCACT 57.814 33.333 16.16 0.00 0.00 3.41
247 264 9.967346 ATCGCATTATGTACATATATACCTCAC 57.033 33.333 16.16 0.00 0.00 3.51
248 265 9.965824 CATCGCATTATGTACATATATACCTCA 57.034 33.333 16.16 0.00 0.00 3.86
249 266 8.916654 GCATCGCATTATGTACATATATACCTC 58.083 37.037 16.16 2.16 0.00 3.85
250 267 7.595130 CGCATCGCATTATGTACATATATACCT 59.405 37.037 16.16 0.00 0.00 3.08
251 268 7.148804 CCGCATCGCATTATGTACATATATACC 60.149 40.741 16.16 3.61 0.00 2.73
252 269 7.593644 TCCGCATCGCATTATGTACATATATAC 59.406 37.037 16.16 7.14 0.00 1.47
260 277 2.028045 CGATCCGCATCGCATTATGTAC 59.972 50.000 0.00 0.00 45.28 2.90
262 279 1.070821 CGATCCGCATCGCATTATGT 58.929 50.000 0.00 0.00 45.28 2.29
263 280 3.863942 CGATCCGCATCGCATTATG 57.136 52.632 0.00 0.00 45.28 1.90
275 292 2.054363 CGAGATCACATTTCCGATCCG 58.946 52.381 0.00 0.00 39.09 4.18
280 297 1.590238 GACAGCGAGATCACATTTCCG 59.410 52.381 0.00 0.00 0.00 4.30
281 298 2.898705 AGACAGCGAGATCACATTTCC 58.101 47.619 0.00 0.00 0.00 3.13
282 299 3.799420 GGTAGACAGCGAGATCACATTTC 59.201 47.826 0.00 0.00 0.00 2.17
283 300 3.786635 GGTAGACAGCGAGATCACATTT 58.213 45.455 0.00 0.00 0.00 2.32
284 301 3.444703 GGTAGACAGCGAGATCACATT 57.555 47.619 0.00 0.00 0.00 2.71
300 317 2.325761 GCTGACACTACAACACGGTAG 58.674 52.381 0.00 0.00 44.97 3.18
302 319 0.249741 GGCTGACACTACAACACGGT 60.250 55.000 0.00 0.00 0.00 4.83
308 325 1.344438 CCTGACAGGCTGACACTACAA 59.656 52.381 23.66 0.00 0.00 2.41
330 348 2.357952 CCACAGATGCCACTGAATGATG 59.642 50.000 12.94 2.28 40.63 3.07
349 370 2.524640 TGGTACCGGACAGCACCA 60.525 61.111 9.46 10.45 38.72 4.17
350 371 1.823169 TTCTGGTACCGGACAGCACC 61.823 60.000 23.57 7.72 34.76 5.01
379 400 1.081840 GTTGCAGCGACTTCAAGGC 60.082 57.895 5.41 0.00 0.00 4.35
380 401 1.165907 TGGTTGCAGCGACTTCAAGG 61.166 55.000 12.78 0.00 0.00 3.61
382 403 0.179059 TCTGGTTGCAGCGACTTCAA 60.179 50.000 12.78 0.00 0.00 2.69
384 405 1.160137 AATCTGGTTGCAGCGACTTC 58.840 50.000 12.78 0.00 0.00 3.01
385 406 1.609208 AAATCTGGTTGCAGCGACTT 58.391 45.000 12.78 0.00 0.00 3.01
413 434 2.668457 CAGATATTCTTATCGCACCCGC 59.332 50.000 0.00 0.00 39.42 6.13
455 543 1.156645 CGTCCTGCTGCTGCTTATCC 61.157 60.000 17.00 0.66 40.48 2.59
567 675 4.639906 TGTGCTGTGCCATGCCGA 62.640 61.111 0.00 0.00 0.00 5.54
569 677 4.430765 GCTGTGCTGTGCCATGCC 62.431 66.667 0.00 0.00 0.00 4.40
570 678 4.771356 CGCTGTGCTGTGCCATGC 62.771 66.667 0.00 0.00 0.00 4.06
571 679 3.359523 ACGCTGTGCTGTGCCATG 61.360 61.111 0.00 0.00 0.00 3.66
572 680 2.730066 TACACGCTGTGCTGTGCCAT 62.730 55.000 8.31 0.72 36.98 4.40
573 681 3.453070 TACACGCTGTGCTGTGCCA 62.453 57.895 8.31 2.08 36.98 4.92
760 934 2.994186 TATTGGTTAGCTCGGGGAAC 57.006 50.000 0.00 0.00 0.00 3.62
761 935 4.513406 ATTTATTGGTTAGCTCGGGGAA 57.487 40.909 0.00 0.00 0.00 3.97
762 936 4.504340 GCTATTTATTGGTTAGCTCGGGGA 60.504 45.833 0.00 0.00 36.31 4.81
770 944 3.058224 GCTGGCGGCTATTTATTGGTTAG 60.058 47.826 11.99 0.00 38.06 2.34
774 951 1.267806 CTGCTGGCGGCTATTTATTGG 59.732 52.381 20.66 0.00 42.39 3.16
852 1030 2.284921 TCTGTCCTGGCCTCCTGG 60.285 66.667 3.32 0.89 42.93 4.45
853 1031 2.365586 CCTCTGTCCTGGCCTCCTG 61.366 68.421 3.32 0.00 0.00 3.86
855 1033 3.791586 GCCTCTGTCCTGGCCTCC 61.792 72.222 3.32 0.00 43.11 4.30
860 1038 4.154347 GAGCGGCCTCTGTCCTGG 62.154 72.222 0.00 0.00 35.16 4.45
861 1039 4.504916 CGAGCGGCCTCTGTCCTG 62.505 72.222 0.00 0.00 35.90 3.86
946 1139 1.458398 CTGGCTGACGAGAGAAGAGA 58.542 55.000 0.00 0.00 0.00 3.10
947 1140 0.455410 CCTGGCTGACGAGAGAAGAG 59.545 60.000 0.00 0.00 0.00 2.85
948 1141 0.967887 CCCTGGCTGACGAGAGAAGA 60.968 60.000 0.00 0.00 0.00 2.87
949 1142 0.967887 TCCCTGGCTGACGAGAGAAG 60.968 60.000 0.00 0.00 0.00 2.85
950 1143 0.967887 CTCCCTGGCTGACGAGAGAA 60.968 60.000 0.00 0.00 0.00 2.87
951 1144 1.379176 CTCCCTGGCTGACGAGAGA 60.379 63.158 0.00 0.00 0.00 3.10
952 1145 2.422231 CCTCCCTGGCTGACGAGAG 61.422 68.421 9.10 3.15 0.00 3.20
953 1146 2.363018 CCTCCCTGGCTGACGAGA 60.363 66.667 9.10 0.00 0.00 4.04
954 1147 2.363018 TCCTCCCTGGCTGACGAG 60.363 66.667 0.00 0.00 35.26 4.18
955 1148 2.363018 CTCCTCCCTGGCTGACGA 60.363 66.667 0.00 0.00 35.26 4.20
956 1149 3.465403 CCTCCTCCCTGGCTGACG 61.465 72.222 0.00 0.00 35.26 4.35
957 1150 1.492993 AAACCTCCTCCCTGGCTGAC 61.493 60.000 0.00 0.00 35.26 3.51
958 1151 1.151810 AAACCTCCTCCCTGGCTGA 60.152 57.895 0.00 0.00 35.26 4.26
1149 1357 4.081917 ACGCCAACAGGAAGAAAAAGAAAA 60.082 37.500 0.00 0.00 0.00 2.29
1150 1358 3.445805 ACGCCAACAGGAAGAAAAAGAAA 59.554 39.130 0.00 0.00 0.00 2.52
1151 1359 3.020984 ACGCCAACAGGAAGAAAAAGAA 58.979 40.909 0.00 0.00 0.00 2.52
1152 1360 2.616842 GACGCCAACAGGAAGAAAAAGA 59.383 45.455 0.00 0.00 0.00 2.52
1153 1361 2.287608 GGACGCCAACAGGAAGAAAAAG 60.288 50.000 0.00 0.00 0.00 2.27
1154 1362 1.679153 GGACGCCAACAGGAAGAAAAA 59.321 47.619 0.00 0.00 0.00 1.94
1159 1367 1.738099 CGAGGACGCCAACAGGAAG 60.738 63.158 0.00 0.00 0.00 3.46
1384 1592 3.417275 AAGCAGAGGACGCCGATCG 62.417 63.158 8.51 8.51 45.38 3.69
1400 1611 5.010012 ACAAATCTAACAACCCAAGCAGAAG 59.990 40.000 0.00 0.00 0.00 2.85
1407 1618 9.226606 CTTGATAGTACAAATCTAACAACCCAA 57.773 33.333 9.00 0.00 30.86 4.12
1427 1638 5.630121 ACACTTCACCAATTGACCTTGATA 58.370 37.500 7.12 0.00 32.26 2.15
1432 1643 4.431416 TGTACACTTCACCAATTGACCT 57.569 40.909 7.12 0.00 32.26 3.85
1449 1660 2.357637 ACGTTTATGCCATGCCATGTAC 59.642 45.455 3.63 0.00 0.00 2.90
1453 1665 2.098614 TCAACGTTTATGCCATGCCAT 58.901 42.857 0.00 0.00 0.00 4.40
1466 1678 4.955925 TGTTTCATGAACAGTCAACGTT 57.044 36.364 7.89 0.00 43.13 3.99
1485 1697 5.300034 TCAGAGCAACTGTGAAAAATGATGT 59.700 36.000 9.97 0.00 45.86 3.06
1496 1708 4.075763 GCTATGTTTCAGAGCAACTGTG 57.924 45.455 10.78 0.00 46.39 3.66
1508 1720 8.897752 AGGAAAGAAATCATAGTGCTATGTTTC 58.102 33.333 22.24 22.24 42.57 2.78
1513 1725 9.692325 AAGAAAGGAAAGAAATCATAGTGCTAT 57.308 29.630 0.00 0.00 0.00 2.97
1516 1728 7.967303 CAGAAGAAAGGAAAGAAATCATAGTGC 59.033 37.037 0.00 0.00 0.00 4.40
1517 1729 7.967303 GCAGAAGAAAGGAAAGAAATCATAGTG 59.033 37.037 0.00 0.00 0.00 2.74
1518 1730 7.887495 AGCAGAAGAAAGGAAAGAAATCATAGT 59.113 33.333 0.00 0.00 0.00 2.12
1519 1731 8.182881 CAGCAGAAGAAAGGAAAGAAATCATAG 58.817 37.037 0.00 0.00 0.00 2.23
1522 1734 6.016777 GTCAGCAGAAGAAAGGAAAGAAATCA 60.017 38.462 0.00 0.00 0.00 2.57
1545 1757 7.599245 AGTCTAAGCAGTACACAATTACTTGTC 59.401 37.037 0.00 0.00 43.76 3.18
1552 1764 4.641396 TGCAGTCTAAGCAGTACACAATT 58.359 39.130 0.00 0.00 37.02 2.32
1592 1811 3.006430 GCATCCCCCTTTTCGAAGAAAAA 59.994 43.478 8.92 0.00 45.90 1.94
1593 1812 2.560981 GCATCCCCCTTTTCGAAGAAAA 59.439 45.455 0.00 7.58 45.90 2.29
1594 1813 2.167662 GCATCCCCCTTTTCGAAGAAA 58.832 47.619 0.00 0.00 45.90 2.52
1595 1814 1.615919 GGCATCCCCCTTTTCGAAGAA 60.616 52.381 0.00 0.00 45.90 2.52
1596 1815 0.034477 GGCATCCCCCTTTTCGAAGA 60.034 55.000 0.00 0.00 0.00 2.87
1597 1816 2.493547 GGCATCCCCCTTTTCGAAG 58.506 57.895 0.00 0.00 0.00 3.79
1598 1817 4.755656 GGCATCCCCCTTTTCGAA 57.244 55.556 0.00 0.00 0.00 3.71
1614 1833 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
1615 1834 2.374830 CTACTGATGCAGAGGCCGGG 62.375 65.000 2.18 0.00 40.13 5.73
1616 1835 1.068753 CTACTGATGCAGAGGCCGG 59.931 63.158 0.00 0.00 40.13 6.13
1617 1836 0.249238 GTCTACTGATGCAGAGGCCG 60.249 60.000 0.00 0.00 40.13 6.13
1618 1837 1.118838 AGTCTACTGATGCAGAGGCC 58.881 55.000 0.00 0.00 40.13 5.19
1619 1838 1.805871 GCAGTCTACTGATGCAGAGGC 60.806 57.143 14.21 0.00 46.59 4.70
1620 1839 1.755959 AGCAGTCTACTGATGCAGAGG 59.244 52.381 14.21 0.00 46.59 3.69
1621 1840 3.188492 CAAGCAGTCTACTGATGCAGAG 58.812 50.000 14.21 0.00 46.59 3.35
1622 1841 2.564504 ACAAGCAGTCTACTGATGCAGA 59.435 45.455 14.21 0.00 46.59 4.26
1623 1842 2.969990 ACAAGCAGTCTACTGATGCAG 58.030 47.619 14.21 4.56 46.59 4.41
1624 1843 3.407424 AACAAGCAGTCTACTGATGCA 57.593 42.857 14.21 0.00 46.59 3.96
1625 1844 5.352569 ACATAAACAAGCAGTCTACTGATGC 59.647 40.000 14.21 0.00 46.59 3.91
1626 1845 6.974932 ACATAAACAAGCAGTCTACTGATG 57.025 37.500 14.21 13.02 46.59 3.07
1627 1846 8.067751 TCTACATAAACAAGCAGTCTACTGAT 57.932 34.615 14.21 4.52 46.59 2.90
1628 1847 7.462571 TCTACATAAACAAGCAGTCTACTGA 57.537 36.000 14.21 0.00 46.59 3.41
1629 1848 7.761704 ACATCTACATAAACAAGCAGTCTACTG 59.238 37.037 5.73 5.73 46.40 2.74
1630 1849 7.761704 CACATCTACATAAACAAGCAGTCTACT 59.238 37.037 0.00 0.00 0.00 2.57
1631 1850 7.010552 CCACATCTACATAAACAAGCAGTCTAC 59.989 40.741 0.00 0.00 0.00 2.59
1632 1851 7.041721 CCACATCTACATAAACAAGCAGTCTA 58.958 38.462 0.00 0.00 0.00 2.59
1633 1852 5.877012 CCACATCTACATAAACAAGCAGTCT 59.123 40.000 0.00 0.00 0.00 3.24
1634 1853 5.065218 CCCACATCTACATAAACAAGCAGTC 59.935 44.000 0.00 0.00 0.00 3.51
1635 1854 4.943705 CCCACATCTACATAAACAAGCAGT 59.056 41.667 0.00 0.00 0.00 4.40
1636 1855 4.943705 ACCCACATCTACATAAACAAGCAG 59.056 41.667 0.00 0.00 0.00 4.24
1637 1856 4.699735 CACCCACATCTACATAAACAAGCA 59.300 41.667 0.00 0.00 0.00 3.91
1638 1857 4.700213 ACACCCACATCTACATAAACAAGC 59.300 41.667 0.00 0.00 0.00 4.01
1639 1858 5.937540 TCACACCCACATCTACATAAACAAG 59.062 40.000 0.00 0.00 0.00 3.16
1640 1859 5.703592 GTCACACCCACATCTACATAAACAA 59.296 40.000 0.00 0.00 0.00 2.83
1641 1860 5.012664 AGTCACACCCACATCTACATAAACA 59.987 40.000 0.00 0.00 0.00 2.83
1642 1861 5.488341 AGTCACACCCACATCTACATAAAC 58.512 41.667 0.00 0.00 0.00 2.01
1664 1883 3.244112 ACCAACCTCTTCAACCGTCTTAG 60.244 47.826 0.00 0.00 0.00 2.18
1667 1886 1.129058 ACCAACCTCTTCAACCGTCT 58.871 50.000 0.00 0.00 0.00 4.18
1670 1889 2.536761 TGTACCAACCTCTTCAACCG 57.463 50.000 0.00 0.00 0.00 4.44
1672 1891 3.003378 GCACTTGTACCAACCTCTTCAAC 59.997 47.826 0.00 0.00 0.00 3.18
1673 1892 3.211045 GCACTTGTACCAACCTCTTCAA 58.789 45.455 0.00 0.00 0.00 2.69
1708 1957 5.222631 AGCACAAATAAACAAGCAGTTAGC 58.777 37.500 0.00 0.00 40.26 3.09
1919 2168 3.125573 TCGTCCCGCTCACTCTCG 61.126 66.667 0.00 0.00 0.00 4.04
1940 2189 1.468520 GTTGCAGATAAGAAAGCCGCA 59.531 47.619 0.00 0.00 0.00 5.69
2111 2360 1.718757 GCCCACGATGTGCATCTTCC 61.719 60.000 10.05 0.00 35.72 3.46
2723 2975 9.953565 TTTCTAGCCTTTATTTCTAGTTGCTTA 57.046 29.630 0.00 0.00 33.41 3.09
2836 3089 4.322424 GGGTGGTGGAATGTGGAATAAAAC 60.322 45.833 0.00 0.00 0.00 2.43
2858 3111 5.499139 ACATTAAACTGGTATTGCGATGG 57.501 39.130 0.00 0.00 0.00 3.51
2863 3116 8.082242 AGACAGAAAACATTAAACTGGTATTGC 58.918 33.333 0.00 0.00 33.57 3.56
2883 3136 8.441312 ACGTAAAATCAACCTTAAAAGACAGA 57.559 30.769 0.00 0.00 0.00 3.41
2915 3168 7.807977 TCTACTCAAAATTCAGCTGAAACTT 57.192 32.000 31.55 23.44 37.61 2.66
3307 3574 4.202295 TGAGATCTTGAGATACACCATGCC 60.202 45.833 0.00 0.00 34.37 4.40
3491 3763 2.091333 ACCAAAGGGAAGCCTTCTCAAA 60.091 45.455 7.16 0.00 38.05 2.69
3648 3920 0.321564 CAGACCAAACAGGATCGCCA 60.322 55.000 0.00 0.00 41.22 5.69
3729 4001 4.712476 ACTTCTCAAAGATGCAACTCTGT 58.288 39.130 0.00 0.00 36.30 3.41
3810 4082 2.439507 ACAGAAGGCATCCGTGGATAAT 59.560 45.455 0.05 0.00 32.93 1.28
3811 4083 1.837439 ACAGAAGGCATCCGTGGATAA 59.163 47.619 0.05 0.00 32.93 1.75
3812 4084 1.496060 ACAGAAGGCATCCGTGGATA 58.504 50.000 0.05 0.00 32.93 2.59
3821 4093 5.016173 TGGTTTATTAGCAACAGAAGGCAT 58.984 37.500 0.00 0.00 0.00 4.40
3827 4099 3.010138 AGGGCTGGTTTATTAGCAACAGA 59.990 43.478 0.00 0.00 41.63 3.41
3911 4185 2.127251 GGTTGCAGCAGCTTAACAAAC 58.873 47.619 17.09 10.52 42.74 2.93
3921 4195 2.281970 TGCTCCTGGTTGCAGCAG 60.282 61.111 11.70 5.68 42.96 4.24
3962 4236 7.867403 ACCACAAGTTTATTTAATGTGCTTGAG 59.133 33.333 17.15 12.11 39.93 3.02
3981 4255 3.192422 TGCGGGAAATGATTAACCACAAG 59.808 43.478 4.29 0.00 0.00 3.16
3982 4256 3.057174 GTGCGGGAAATGATTAACCACAA 60.057 43.478 4.29 0.00 0.00 3.33
3983 4257 2.490115 GTGCGGGAAATGATTAACCACA 59.510 45.455 4.29 0.00 0.00 4.17
3984 4258 2.752903 AGTGCGGGAAATGATTAACCAC 59.247 45.455 4.29 0.00 0.00 4.16
3985 4259 3.080300 AGTGCGGGAAATGATTAACCA 57.920 42.857 4.29 0.00 0.00 3.67
3986 4260 3.442273 TGAAGTGCGGGAAATGATTAACC 59.558 43.478 0.00 0.00 0.00 2.85
3987 4261 4.156008 AGTGAAGTGCGGGAAATGATTAAC 59.844 41.667 0.00 0.00 0.00 2.01
3988 4262 4.331968 AGTGAAGTGCGGGAAATGATTAA 58.668 39.130 0.00 0.00 0.00 1.40
3989 4263 3.950397 AGTGAAGTGCGGGAAATGATTA 58.050 40.909 0.00 0.00 0.00 1.75
3990 4264 2.795329 AGTGAAGTGCGGGAAATGATT 58.205 42.857 0.00 0.00 0.00 2.57
3991 4265 2.496899 AGTGAAGTGCGGGAAATGAT 57.503 45.000 0.00 0.00 0.00 2.45
3992 4266 2.270352 AAGTGAAGTGCGGGAAATGA 57.730 45.000 0.00 0.00 0.00 2.57
3993 4267 2.664916 CAAAGTGAAGTGCGGGAAATG 58.335 47.619 0.00 0.00 0.00 2.32
3994 4268 1.000274 GCAAAGTGAAGTGCGGGAAAT 60.000 47.619 0.00 0.00 0.00 2.17
3995 4269 0.383949 GCAAAGTGAAGTGCGGGAAA 59.616 50.000 0.00 0.00 0.00 3.13
3996 4270 0.465460 AGCAAAGTGAAGTGCGGGAA 60.465 50.000 0.00 0.00 45.62 3.97
3997 4271 0.465460 AAGCAAAGTGAAGTGCGGGA 60.465 50.000 0.00 0.00 45.62 5.14
3998 4272 0.385390 AAAGCAAAGTGAAGTGCGGG 59.615 50.000 0.00 0.00 45.62 6.13
3999 4273 1.202290 ACAAAGCAAAGTGAAGTGCGG 60.202 47.619 0.00 0.00 45.62 5.69
4000 4274 2.193306 ACAAAGCAAAGTGAAGTGCG 57.807 45.000 0.00 0.00 45.62 5.34
4001 4275 3.426525 GCATACAAAGCAAAGTGAAGTGC 59.573 43.478 0.00 0.00 41.22 4.40
4002 4276 4.863491 AGCATACAAAGCAAAGTGAAGTG 58.137 39.130 0.00 0.00 0.00 3.16
4003 4277 5.163519 ACAAGCATACAAAGCAAAGTGAAGT 60.164 36.000 0.00 0.00 0.00 3.01
4004 4278 5.174398 CACAAGCATACAAAGCAAAGTGAAG 59.826 40.000 0.00 0.00 34.46 3.02
4005 4279 5.042593 CACAAGCATACAAAGCAAAGTGAA 58.957 37.500 0.00 0.00 34.46 3.18
4006 4280 4.499526 CCACAAGCATACAAAGCAAAGTGA 60.500 41.667 0.00 0.00 34.46 3.41
4007 4281 3.737266 CCACAAGCATACAAAGCAAAGTG 59.263 43.478 0.00 0.00 33.27 3.16
4008 4282 3.243839 CCCACAAGCATACAAAGCAAAGT 60.244 43.478 0.00 0.00 0.00 2.66
4009 4283 3.319755 CCCACAAGCATACAAAGCAAAG 58.680 45.455 0.00 0.00 0.00 2.77
4010 4284 2.547642 GCCCACAAGCATACAAAGCAAA 60.548 45.455 0.00 0.00 0.00 3.68
4011 4285 1.000731 GCCCACAAGCATACAAAGCAA 59.999 47.619 0.00 0.00 0.00 3.91
4012 4286 0.602562 GCCCACAAGCATACAAAGCA 59.397 50.000 0.00 0.00 0.00 3.91
4013 4287 0.890683 AGCCCACAAGCATACAAAGC 59.109 50.000 0.00 0.00 34.23 3.51
4014 4288 3.256631 AGAAAGCCCACAAGCATACAAAG 59.743 43.478 0.00 0.00 34.23 2.77
4015 4289 3.230134 AGAAAGCCCACAAGCATACAAA 58.770 40.909 0.00 0.00 34.23 2.83
4016 4290 2.875296 AGAAAGCCCACAAGCATACAA 58.125 42.857 0.00 0.00 34.23 2.41
4017 4291 2.584835 AGAAAGCCCACAAGCATACA 57.415 45.000 0.00 0.00 34.23 2.29
4018 4292 5.582689 AATTAGAAAGCCCACAAGCATAC 57.417 39.130 0.00 0.00 34.23 2.39
4019 4293 6.658849 TCTAATTAGAAAGCCCACAAGCATA 58.341 36.000 12.87 0.00 34.23 3.14
4020 4294 5.509498 TCTAATTAGAAAGCCCACAAGCAT 58.491 37.500 12.87 0.00 34.23 3.79
4021 4295 4.917385 TCTAATTAGAAAGCCCACAAGCA 58.083 39.130 12.87 0.00 34.23 3.91
4022 4296 6.456795 AATCTAATTAGAAAGCCCACAAGC 57.543 37.500 18.79 0.00 35.69 4.01
4023 4297 9.956720 CAATAATCTAATTAGAAAGCCCACAAG 57.043 33.333 18.79 0.00 35.69 3.16
4024 4298 8.413229 GCAATAATCTAATTAGAAAGCCCACAA 58.587 33.333 18.79 0.00 35.69 3.33
4025 4299 7.014230 GGCAATAATCTAATTAGAAAGCCCACA 59.986 37.037 18.79 0.00 35.69 4.17
4026 4300 7.231519 AGGCAATAATCTAATTAGAAAGCCCAC 59.768 37.037 26.28 15.13 35.29 4.61
4027 4301 7.297614 AGGCAATAATCTAATTAGAAAGCCCA 58.702 34.615 26.28 10.90 35.29 5.36
4028 4302 7.767250 AGGCAATAATCTAATTAGAAAGCCC 57.233 36.000 26.28 18.83 35.29 5.19
4029 4303 8.454894 GCTAGGCAATAATCTAATTAGAAAGCC 58.545 37.037 24.48 24.48 35.69 4.35
4030 4304 9.225436 AGCTAGGCAATAATCTAATTAGAAAGC 57.775 33.333 18.79 16.12 35.69 3.51
4038 4312 8.787852 GCAAAGTAAGCTAGGCAATAATCTAAT 58.212 33.333 0.00 0.00 0.00 1.73
4039 4313 7.993183 AGCAAAGTAAGCTAGGCAATAATCTAA 59.007 33.333 0.00 0.00 41.32 2.10
4040 4314 7.509546 AGCAAAGTAAGCTAGGCAATAATCTA 58.490 34.615 0.00 0.00 41.32 1.98
4041 4315 6.360618 AGCAAAGTAAGCTAGGCAATAATCT 58.639 36.000 0.00 0.00 41.32 2.40
4042 4316 6.625873 AGCAAAGTAAGCTAGGCAATAATC 57.374 37.500 0.00 0.00 41.32 1.75
4043 4317 7.122650 TCAAAGCAAAGTAAGCTAGGCAATAAT 59.877 33.333 0.00 0.00 42.53 1.28
4044 4318 6.432783 TCAAAGCAAAGTAAGCTAGGCAATAA 59.567 34.615 0.00 0.00 42.53 1.40
4045 4319 5.943416 TCAAAGCAAAGTAAGCTAGGCAATA 59.057 36.000 0.00 0.00 42.53 1.90
4046 4320 4.766891 TCAAAGCAAAGTAAGCTAGGCAAT 59.233 37.500 0.00 0.00 42.53 3.56
4047 4321 4.141287 TCAAAGCAAAGTAAGCTAGGCAA 58.859 39.130 0.00 0.00 42.53 4.52
4048 4322 3.750371 TCAAAGCAAAGTAAGCTAGGCA 58.250 40.909 0.00 0.00 42.53 4.75
4049 4323 4.003648 TCTCAAAGCAAAGTAAGCTAGGC 58.996 43.478 0.00 0.00 42.53 3.93
4050 4324 6.549952 CAATCTCAAAGCAAAGTAAGCTAGG 58.450 40.000 0.00 0.00 42.53 3.02
4051 4325 6.026513 GCAATCTCAAAGCAAAGTAAGCTAG 58.973 40.000 0.00 0.00 42.53 3.42
4052 4326 5.707298 AGCAATCTCAAAGCAAAGTAAGCTA 59.293 36.000 0.00 0.00 42.53 3.32
4053 4327 4.522022 AGCAATCTCAAAGCAAAGTAAGCT 59.478 37.500 0.00 0.00 45.97 3.74
4054 4328 4.802999 AGCAATCTCAAAGCAAAGTAAGC 58.197 39.130 0.00 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.