Multiple sequence alignment - TraesCS4B01G254600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G254600 chr4B 100.000 2363 0 0 1 2363 519818756 519821118 0.000000e+00 4364
1 TraesCS4B01G254600 chr4B 89.752 1288 96 15 69 1321 489012073 489010787 0.000000e+00 1615
2 TraesCS4B01G254600 chr4B 88.986 917 68 11 422 1321 652822799 652823699 0.000000e+00 1103
3 TraesCS4B01G254600 chr4B 86.134 613 68 13 1760 2363 610529348 610529952 0.000000e+00 645
4 TraesCS4B01G254600 chr3B 89.392 1348 103 18 5 1321 708915738 708914400 0.000000e+00 1661
5 TraesCS4B01G254600 chr5B 88.938 1356 110 14 5 1321 580100121 580098767 0.000000e+00 1637
6 TraesCS4B01G254600 chr5B 85.729 981 109 12 5 954 182076896 182077876 0.000000e+00 1007
7 TraesCS4B01G254600 chr5B 88.773 383 38 5 1314 1695 595077033 595077411 4.600000e-127 464
8 TraesCS4B01G254600 chr7B 88.567 1347 104 16 5 1315 654022258 654020926 0.000000e+00 1589
9 TraesCS4B01G254600 chr7B 88.099 1336 139 11 5 1321 2433404 2432070 0.000000e+00 1568
10 TraesCS4B01G254600 chr7B 89.286 616 46 11 1757 2363 358413700 358414304 0.000000e+00 754
11 TraesCS4B01G254600 chr7B 89.198 611 45 13 1762 2363 223664715 223665313 0.000000e+00 743
12 TraesCS4B01G254600 chr3D 86.711 1347 131 18 5 1315 435708078 435709412 0.000000e+00 1452
13 TraesCS4B01G254600 chr3D 86.617 1345 141 17 5 1321 315771105 315769772 0.000000e+00 1450
14 TraesCS4B01G254600 chr1D 86.347 1355 142 17 5 1321 217012077 217010728 0.000000e+00 1437
15 TraesCS4B01G254600 chr1D 85.417 384 51 4 1313 1695 467922479 467922100 6.120000e-106 394
16 TraesCS4B01G254600 chr5D 85.960 1339 152 11 5 1315 137050089 137051419 0.000000e+00 1399
17 TraesCS4B01G254600 chr5D 86.300 781 89 12 1 770 217057207 217057980 0.000000e+00 833
18 TraesCS4B01G254600 chr7D 85.682 1348 149 23 5 1321 511937521 511938855 0.000000e+00 1380
19 TraesCS4B01G254600 chr7D 85.865 757 88 12 23 771 133947041 133947786 0.000000e+00 787
20 TraesCS4B01G254600 chr7D 85.179 614 69 18 1760 2363 582085071 582084470 5.580000e-171 610
21 TraesCS4B01G254600 chr7D 85.751 386 36 8 1313 1695 412232273 412232642 7.920000e-105 390
22 TraesCS4B01G254600 chr2B 88.757 1094 91 15 5 1071 375535727 375534639 0.000000e+00 1310
23 TraesCS4B01G254600 chr2B 82.393 585 75 19 1789 2360 686094291 686094860 3.530000e-133 484
24 TraesCS4B01G254600 chr2B 88.251 366 41 2 1313 1678 355884755 355885118 1.000000e-118 436
25 TraesCS4B01G254600 chr1B 91.244 788 52 3 550 1320 570017549 570016762 0.000000e+00 1057
26 TraesCS4B01G254600 chr6B 91.181 703 39 9 634 1315 484540856 484540156 0.000000e+00 933
27 TraesCS4B01G254600 chr6B 86.248 589 57 18 1760 2341 695451467 695450896 3.340000e-173 617
28 TraesCS4B01G254600 chr1A 89.869 612 45 10 1760 2363 382098045 382097443 0.000000e+00 771
29 TraesCS4B01G254600 chr1A 84.239 368 51 7 1330 1695 41828384 41828746 3.740000e-93 351
30 TraesCS4B01G254600 chr4A 87.942 622 51 14 1758 2363 504171337 504171950 0.000000e+00 712
31 TraesCS4B01G254600 chr4A 86.120 598 52 19 1749 2339 105179184 105178611 1.200000e-172 616
32 TraesCS4B01G254600 chr7A 85.279 591 58 22 1757 2339 159602525 159601956 1.220000e-162 582
33 TraesCS4B01G254600 chr2D 84.456 386 45 15 1314 1694 199858552 199858927 1.330000e-97 366
34 TraesCS4B01G254600 chr2D 84.225 374 47 10 1330 1698 504198063 504197697 1.040000e-93 353
35 TraesCS4B01G254600 chr2D 82.957 399 51 13 1314 1704 127265770 127265381 6.250000e-91 344
36 TraesCS4B01G254600 chr5A 84.156 385 52 8 1313 1695 363919114 363919491 4.800000e-97 364


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G254600 chr4B 519818756 519821118 2362 False 4364 4364 100.000 1 2363 1 chr4B.!!$F1 2362
1 TraesCS4B01G254600 chr4B 489010787 489012073 1286 True 1615 1615 89.752 69 1321 1 chr4B.!!$R1 1252
2 TraesCS4B01G254600 chr4B 652822799 652823699 900 False 1103 1103 88.986 422 1321 1 chr4B.!!$F3 899
3 TraesCS4B01G254600 chr4B 610529348 610529952 604 False 645 645 86.134 1760 2363 1 chr4B.!!$F2 603
4 TraesCS4B01G254600 chr3B 708914400 708915738 1338 True 1661 1661 89.392 5 1321 1 chr3B.!!$R1 1316
5 TraesCS4B01G254600 chr5B 580098767 580100121 1354 True 1637 1637 88.938 5 1321 1 chr5B.!!$R1 1316
6 TraesCS4B01G254600 chr5B 182076896 182077876 980 False 1007 1007 85.729 5 954 1 chr5B.!!$F1 949
7 TraesCS4B01G254600 chr7B 654020926 654022258 1332 True 1589 1589 88.567 5 1315 1 chr7B.!!$R2 1310
8 TraesCS4B01G254600 chr7B 2432070 2433404 1334 True 1568 1568 88.099 5 1321 1 chr7B.!!$R1 1316
9 TraesCS4B01G254600 chr7B 358413700 358414304 604 False 754 754 89.286 1757 2363 1 chr7B.!!$F2 606
10 TraesCS4B01G254600 chr7B 223664715 223665313 598 False 743 743 89.198 1762 2363 1 chr7B.!!$F1 601
11 TraesCS4B01G254600 chr3D 435708078 435709412 1334 False 1452 1452 86.711 5 1315 1 chr3D.!!$F1 1310
12 TraesCS4B01G254600 chr3D 315769772 315771105 1333 True 1450 1450 86.617 5 1321 1 chr3D.!!$R1 1316
13 TraesCS4B01G254600 chr1D 217010728 217012077 1349 True 1437 1437 86.347 5 1321 1 chr1D.!!$R1 1316
14 TraesCS4B01G254600 chr5D 137050089 137051419 1330 False 1399 1399 85.960 5 1315 1 chr5D.!!$F1 1310
15 TraesCS4B01G254600 chr5D 217057207 217057980 773 False 833 833 86.300 1 770 1 chr5D.!!$F2 769
16 TraesCS4B01G254600 chr7D 511937521 511938855 1334 False 1380 1380 85.682 5 1321 1 chr7D.!!$F3 1316
17 TraesCS4B01G254600 chr7D 133947041 133947786 745 False 787 787 85.865 23 771 1 chr7D.!!$F1 748
18 TraesCS4B01G254600 chr7D 582084470 582085071 601 True 610 610 85.179 1760 2363 1 chr7D.!!$R1 603
19 TraesCS4B01G254600 chr2B 375534639 375535727 1088 True 1310 1310 88.757 5 1071 1 chr2B.!!$R1 1066
20 TraesCS4B01G254600 chr2B 686094291 686094860 569 False 484 484 82.393 1789 2360 1 chr2B.!!$F2 571
21 TraesCS4B01G254600 chr1B 570016762 570017549 787 True 1057 1057 91.244 550 1320 1 chr1B.!!$R1 770
22 TraesCS4B01G254600 chr6B 484540156 484540856 700 True 933 933 91.181 634 1315 1 chr6B.!!$R1 681
23 TraesCS4B01G254600 chr6B 695450896 695451467 571 True 617 617 86.248 1760 2341 1 chr6B.!!$R2 581
24 TraesCS4B01G254600 chr1A 382097443 382098045 602 True 771 771 89.869 1760 2363 1 chr1A.!!$R1 603
25 TraesCS4B01G254600 chr4A 504171337 504171950 613 False 712 712 87.942 1758 2363 1 chr4A.!!$F1 605
26 TraesCS4B01G254600 chr4A 105178611 105179184 573 True 616 616 86.120 1749 2339 1 chr4A.!!$R1 590
27 TraesCS4B01G254600 chr7A 159601956 159602525 569 True 582 582 85.279 1757 2339 1 chr7A.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 926 0.250124 ACCTGTTCGACGAAATGCCA 60.25 50.0 12.67 5.18 0.0 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 1791 0.037303 AGACGGTCCGGTCACTTAGA 59.963 55.0 17.28 0.0 39.42 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 1.883544 TGTTCGCTTTTCGTCCGCA 60.884 52.632 0.00 0.00 39.67 5.69
469 533 2.047844 CACAGCAGGAGGTCACCG 60.048 66.667 0.00 0.00 34.73 4.94
541 605 2.663075 CCTAGCCAGCACAGCCTCA 61.663 63.158 0.00 0.00 0.00 3.86
548 612 1.460504 CAGCACAGCCTCATCAACAT 58.539 50.000 0.00 0.00 0.00 2.71
606 671 2.270205 CCTCGGATTGTGCTGCCT 59.730 61.111 0.00 0.00 0.00 4.75
749 820 2.264794 GCCCATCGACCTCAACGT 59.735 61.111 0.00 0.00 0.00 3.99
840 926 0.250124 ACCTGTTCGACGAAATGCCA 60.250 50.000 12.67 5.18 0.00 4.92
875 961 1.661341 GCCTACATGCAGAACCTCAG 58.339 55.000 0.00 0.00 0.00 3.35
889 975 2.361992 TCAGCTTCGAGGGCGGTA 60.362 61.111 10.89 0.00 38.28 4.02
1323 1422 2.331893 CCAAATTGTGGCCGCGAGA 61.332 57.895 8.23 0.49 41.72 4.04
1324 1423 1.135315 CAAATTGTGGCCGCGAGAG 59.865 57.895 8.23 0.37 0.00 3.20
1352 1451 2.697431 TTTTGTATGCCGACTTGTGC 57.303 45.000 0.00 0.00 0.00 4.57
1353 1452 0.515127 TTTGTATGCCGACTTGTGCG 59.485 50.000 0.00 0.00 0.00 5.34
1354 1453 1.906994 TTGTATGCCGACTTGTGCGC 61.907 55.000 0.00 0.00 0.00 6.09
1355 1454 2.100631 GTATGCCGACTTGTGCGCT 61.101 57.895 9.73 0.00 0.00 5.92
1356 1455 2.100031 TATGCCGACTTGTGCGCTG 61.100 57.895 9.73 0.00 0.00 5.18
1369 1468 3.190849 CGCTGGCATGACCACGAG 61.191 66.667 17.40 3.18 46.36 4.18
1370 1469 2.821366 GCTGGCATGACCACGAGG 60.821 66.667 0.00 0.00 46.36 4.63
1371 1470 2.821366 CTGGCATGACCACGAGGC 60.821 66.667 0.00 0.00 46.36 4.70
1372 1471 4.408821 TGGCATGACCACGAGGCC 62.409 66.667 0.00 0.00 46.36 5.19
1388 1487 4.429212 CCGTGATGGCGTGGTCGA 62.429 66.667 0.00 0.00 39.71 4.20
1389 1488 2.431771 CGTGATGGCGTGGTCGAA 60.432 61.111 0.00 0.00 39.71 3.71
1390 1489 2.726691 CGTGATGGCGTGGTCGAAC 61.727 63.158 0.00 0.00 39.71 3.95
1391 1490 1.374252 GTGATGGCGTGGTCGAACT 60.374 57.895 0.33 0.00 39.71 3.01
1392 1491 1.080093 TGATGGCGTGGTCGAACTC 60.080 57.895 0.33 0.00 39.71 3.01
1393 1492 1.080093 GATGGCGTGGTCGAACTCA 60.080 57.895 0.33 0.00 39.71 3.41
1394 1493 0.669318 GATGGCGTGGTCGAACTCAA 60.669 55.000 0.33 0.00 39.71 3.02
1395 1494 0.670546 ATGGCGTGGTCGAACTCAAG 60.671 55.000 0.33 0.00 39.71 3.02
1396 1495 1.300697 GGCGTGGTCGAACTCAAGT 60.301 57.895 0.33 0.00 39.71 3.16
1397 1496 1.282930 GGCGTGGTCGAACTCAAGTC 61.283 60.000 0.33 0.00 39.71 3.01
1398 1497 1.282930 GCGTGGTCGAACTCAAGTCC 61.283 60.000 0.33 0.00 39.71 3.85
1399 1498 0.666577 CGTGGTCGAACTCAAGTCCC 60.667 60.000 0.33 0.00 39.71 4.46
1400 1499 0.391597 GTGGTCGAACTCAAGTCCCA 59.608 55.000 0.33 0.00 0.00 4.37
1401 1500 0.391597 TGGTCGAACTCAAGTCCCAC 59.608 55.000 0.33 0.00 0.00 4.61
1402 1501 0.320508 GGTCGAACTCAAGTCCCACC 60.321 60.000 0.00 0.00 0.00 4.61
1403 1502 0.320508 GTCGAACTCAAGTCCCACCC 60.321 60.000 0.00 0.00 0.00 4.61
1404 1503 1.003718 CGAACTCAAGTCCCACCCC 60.004 63.158 0.00 0.00 0.00 4.95
1405 1504 1.481056 CGAACTCAAGTCCCACCCCT 61.481 60.000 0.00 0.00 0.00 4.79
1406 1505 0.771755 GAACTCAAGTCCCACCCCTT 59.228 55.000 0.00 0.00 0.00 3.95
1407 1506 1.145119 GAACTCAAGTCCCACCCCTTT 59.855 52.381 0.00 0.00 0.00 3.11
1408 1507 1.231963 ACTCAAGTCCCACCCCTTTT 58.768 50.000 0.00 0.00 0.00 2.27
1409 1508 1.573857 ACTCAAGTCCCACCCCTTTTT 59.426 47.619 0.00 0.00 0.00 1.94
1410 1509 1.963515 CTCAAGTCCCACCCCTTTTTG 59.036 52.381 0.00 0.00 0.00 2.44
1411 1510 1.289530 TCAAGTCCCACCCCTTTTTGT 59.710 47.619 0.00 0.00 0.00 2.83
1412 1511 1.412343 CAAGTCCCACCCCTTTTTGTG 59.588 52.381 0.00 0.00 0.00 3.33
1413 1512 0.634465 AGTCCCACCCCTTTTTGTGT 59.366 50.000 0.00 0.00 0.00 3.72
1414 1513 0.750249 GTCCCACCCCTTTTTGTGTG 59.250 55.000 0.00 0.00 0.00 3.82
1415 1514 1.045911 TCCCACCCCTTTTTGTGTGC 61.046 55.000 0.00 0.00 0.00 4.57
1416 1515 1.048160 CCCACCCCTTTTTGTGTGCT 61.048 55.000 0.00 0.00 0.00 4.40
1417 1516 0.104671 CCACCCCTTTTTGTGTGCTG 59.895 55.000 0.00 0.00 0.00 4.41
1418 1517 0.104671 CACCCCTTTTTGTGTGCTGG 59.895 55.000 0.00 0.00 0.00 4.85
1419 1518 1.069596 CCCCTTTTTGTGTGCTGGC 59.930 57.895 0.00 0.00 0.00 4.85
1420 1519 1.684386 CCCCTTTTTGTGTGCTGGCA 61.684 55.000 0.00 0.00 0.00 4.92
1421 1520 0.393820 CCCTTTTTGTGTGCTGGCAT 59.606 50.000 0.00 0.00 0.00 4.40
1422 1521 1.504359 CCTTTTTGTGTGCTGGCATG 58.496 50.000 0.00 0.00 0.00 4.06
1423 1522 1.202557 CCTTTTTGTGTGCTGGCATGT 60.203 47.619 0.00 0.00 0.00 3.21
1424 1523 1.862201 CTTTTTGTGTGCTGGCATGTG 59.138 47.619 0.00 0.00 0.00 3.21
1425 1524 0.822811 TTTTGTGTGCTGGCATGTGT 59.177 45.000 0.00 0.00 0.00 3.72
1426 1525 0.102663 TTTGTGTGCTGGCATGTGTG 59.897 50.000 0.00 0.00 0.00 3.82
1436 1535 4.111016 CATGTGTGCCAGCCGCTG 62.111 66.667 13.82 13.82 38.78 5.18
1455 1554 4.494811 CGAGTACGCCAGCATGAA 57.505 55.556 0.00 0.00 39.69 2.57
1456 1555 1.999051 CGAGTACGCCAGCATGAAC 59.001 57.895 0.00 0.00 39.69 3.18
1457 1556 0.458543 CGAGTACGCCAGCATGAACT 60.459 55.000 0.00 0.00 39.69 3.01
1458 1557 1.002366 GAGTACGCCAGCATGAACTG 58.998 55.000 0.00 0.00 39.69 3.16
1459 1558 0.321671 AGTACGCCAGCATGAACTGT 59.678 50.000 0.00 0.00 39.69 3.55
1460 1559 0.443869 GTACGCCAGCATGAACTGTG 59.556 55.000 0.00 0.00 39.69 3.66
1461 1560 0.034756 TACGCCAGCATGAACTGTGT 59.965 50.000 0.00 0.00 39.69 3.72
1462 1561 1.208358 CGCCAGCATGAACTGTGTG 59.792 57.895 0.00 0.00 39.69 3.82
1463 1562 1.582968 GCCAGCATGAACTGTGTGG 59.417 57.895 0.00 0.00 39.69 4.17
1464 1563 1.174712 GCCAGCATGAACTGTGTGGT 61.175 55.000 0.00 0.00 39.69 4.16
1465 1564 0.594602 CCAGCATGAACTGTGTGGTG 59.405 55.000 0.00 11.13 39.69 4.17
1466 1565 0.039798 CAGCATGAACTGTGTGGTGC 60.040 55.000 0.00 4.25 39.69 5.01
1467 1566 0.466007 AGCATGAACTGTGTGGTGCA 60.466 50.000 0.00 0.00 35.17 4.57
1468 1567 0.599558 GCATGAACTGTGTGGTGCAT 59.400 50.000 0.00 0.00 35.99 3.96
1469 1568 1.000060 GCATGAACTGTGTGGTGCATT 60.000 47.619 0.00 0.00 33.51 3.56
1470 1569 2.546373 GCATGAACTGTGTGGTGCATTT 60.546 45.455 0.00 0.00 33.51 2.32
1471 1570 3.719924 CATGAACTGTGTGGTGCATTTT 58.280 40.909 0.00 0.00 33.51 1.82
1472 1571 3.883830 TGAACTGTGTGGTGCATTTTT 57.116 38.095 0.00 0.00 0.00 1.94
1501 1600 0.588252 CAATGTATGCCGGCACTAGC 59.412 55.000 35.50 21.63 41.10 3.42
1502 1601 0.180171 AATGTATGCCGGCACTAGCA 59.820 50.000 35.50 26.43 44.61 3.49
1503 1602 0.180171 ATGTATGCCGGCACTAGCAA 59.820 50.000 35.50 14.97 43.36 3.91
1504 1603 0.180171 TGTATGCCGGCACTAGCAAT 59.820 50.000 35.50 17.37 43.36 3.56
1505 1604 0.588252 GTATGCCGGCACTAGCAATG 59.412 55.000 35.50 0.00 43.36 2.82
1506 1605 0.467804 TATGCCGGCACTAGCAATGA 59.532 50.000 35.50 4.30 43.36 2.57
1507 1606 0.179009 ATGCCGGCACTAGCAATGAT 60.179 50.000 35.50 9.04 43.36 2.45
1508 1607 1.096967 TGCCGGCACTAGCAATGATG 61.097 55.000 29.03 0.00 44.61 3.07
1532 1631 1.344458 CATGATCTATGTCCGCGAGC 58.656 55.000 8.23 0.00 31.92 5.03
1533 1632 0.244994 ATGATCTATGTCCGCGAGCC 59.755 55.000 8.23 0.00 0.00 4.70
1534 1633 0.823769 TGATCTATGTCCGCGAGCCT 60.824 55.000 8.23 0.00 0.00 4.58
1535 1634 0.315568 GATCTATGTCCGCGAGCCTT 59.684 55.000 8.23 0.00 0.00 4.35
1536 1635 0.753262 ATCTATGTCCGCGAGCCTTT 59.247 50.000 8.23 0.00 0.00 3.11
1537 1636 0.535335 TCTATGTCCGCGAGCCTTTT 59.465 50.000 8.23 0.00 0.00 2.27
1538 1637 1.066430 TCTATGTCCGCGAGCCTTTTT 60.066 47.619 8.23 0.00 0.00 1.94
1539 1638 2.166870 TCTATGTCCGCGAGCCTTTTTA 59.833 45.455 8.23 0.00 0.00 1.52
1540 1639 1.816074 ATGTCCGCGAGCCTTTTTAA 58.184 45.000 8.23 0.00 0.00 1.52
1541 1640 1.595466 TGTCCGCGAGCCTTTTTAAA 58.405 45.000 8.23 0.00 0.00 1.52
1542 1641 1.948145 TGTCCGCGAGCCTTTTTAAAA 59.052 42.857 8.23 0.00 0.00 1.52
1543 1642 2.358267 TGTCCGCGAGCCTTTTTAAAAA 59.642 40.909 8.23 12.62 0.00 1.94
1544 1643 3.004944 TGTCCGCGAGCCTTTTTAAAAAT 59.995 39.130 8.23 0.00 0.00 1.82
1545 1644 3.985279 GTCCGCGAGCCTTTTTAAAAATT 59.015 39.130 8.23 3.46 0.00 1.82
1546 1645 4.446385 GTCCGCGAGCCTTTTTAAAAATTT 59.554 37.500 8.23 3.13 0.00 1.82
1547 1646 5.630264 GTCCGCGAGCCTTTTTAAAAATTTA 59.370 36.000 8.23 0.00 0.00 1.40
1548 1647 6.144241 GTCCGCGAGCCTTTTTAAAAATTTAA 59.856 34.615 8.23 0.00 0.00 1.52
1549 1648 6.363896 TCCGCGAGCCTTTTTAAAAATTTAAG 59.636 34.615 8.23 7.34 34.45 1.85
1550 1649 6.144886 CCGCGAGCCTTTTTAAAAATTTAAGT 59.855 34.615 8.23 0.00 34.45 2.24
1551 1650 7.001347 CGCGAGCCTTTTTAAAAATTTAAGTG 58.999 34.615 13.55 8.66 34.45 3.16
1552 1651 6.790350 GCGAGCCTTTTTAAAAATTTAAGTGC 59.210 34.615 13.55 8.66 34.45 4.40
1553 1652 7.001347 CGAGCCTTTTTAAAAATTTAAGTGCG 58.999 34.615 13.55 6.66 34.45 5.34
1554 1653 7.184800 AGCCTTTTTAAAAATTTAAGTGCGG 57.815 32.000 13.55 9.09 34.45 5.69
1555 1654 6.987404 AGCCTTTTTAAAAATTTAAGTGCGGA 59.013 30.769 13.55 0.00 34.45 5.54
1556 1655 7.042321 AGCCTTTTTAAAAATTTAAGTGCGGAC 60.042 33.333 13.55 0.00 34.45 4.79
1557 1656 7.254488 GCCTTTTTAAAAATTTAAGTGCGGACA 60.254 33.333 13.55 0.00 34.45 4.02
1558 1657 8.769891 CCTTTTTAAAAATTTAAGTGCGGACAT 58.230 29.630 13.55 0.00 34.45 3.06
1559 1658 9.579610 CTTTTTAAAAATTTAAGTGCGGACATG 57.420 29.630 13.55 0.00 34.45 3.21
1560 1659 8.873215 TTTTAAAAATTTAAGTGCGGACATGA 57.127 26.923 10.52 0.00 34.45 3.07
1561 1660 8.873215 TTTAAAAATTTAAGTGCGGACATGAA 57.127 26.923 10.52 0.00 34.45 2.57
1562 1661 8.873215 TTAAAAATTTAAGTGCGGACATGAAA 57.127 26.923 10.52 6.67 0.00 2.69
1563 1662 7.778470 AAAAATTTAAGTGCGGACATGAAAA 57.222 28.000 10.52 4.33 0.00 2.29
1564 1663 7.961325 AAAATTTAAGTGCGGACATGAAAAT 57.039 28.000 10.52 6.49 0.00 1.82
1565 1664 6.949578 AATTTAAGTGCGGACATGAAAATG 57.050 33.333 10.52 0.00 0.00 2.32
1566 1665 4.433186 TTAAGTGCGGACATGAAAATGG 57.567 40.909 10.52 0.00 0.00 3.16
1567 1666 1.176527 AGTGCGGACATGAAAATGGG 58.823 50.000 10.52 0.00 0.00 4.00
1568 1667 0.887933 GTGCGGACATGAAAATGGGT 59.112 50.000 0.63 0.00 0.00 4.51
1569 1668 1.272212 GTGCGGACATGAAAATGGGTT 59.728 47.619 0.63 0.00 0.00 4.11
1570 1669 1.271934 TGCGGACATGAAAATGGGTTG 59.728 47.619 0.00 0.00 0.00 3.77
1571 1670 1.404047 GCGGACATGAAAATGGGTTGG 60.404 52.381 0.00 0.00 0.00 3.77
1572 1671 1.404047 CGGACATGAAAATGGGTTGGC 60.404 52.381 0.00 0.00 0.00 4.52
1573 1672 1.404047 GGACATGAAAATGGGTTGGCG 60.404 52.381 0.00 0.00 0.00 5.69
1574 1673 0.037419 ACATGAAAATGGGTTGGCGC 60.037 50.000 0.00 0.00 0.00 6.53
1575 1674 0.037512 CATGAAAATGGGTTGGCGCA 60.038 50.000 10.83 0.00 41.83 6.09
1580 1679 2.037049 ATGGGTTGGCGCATTGGA 59.963 55.556 10.83 0.00 44.43 3.53
1581 1680 2.350458 ATGGGTTGGCGCATTGGAC 61.350 57.895 10.83 0.00 44.43 4.02
1582 1681 4.114997 GGGTTGGCGCATTGGACG 62.115 66.667 10.83 0.00 0.00 4.79
1589 1688 3.425713 CGCATTGGACGCACTGCT 61.426 61.111 0.00 0.00 32.48 4.24
1590 1689 2.177531 GCATTGGACGCACTGCTG 59.822 61.111 0.00 0.00 0.00 4.41
1591 1690 2.327343 GCATTGGACGCACTGCTGA 61.327 57.895 0.00 0.00 0.00 4.26
1592 1691 1.499056 CATTGGACGCACTGCTGAC 59.501 57.895 0.00 0.00 0.00 3.51
1593 1692 1.672356 ATTGGACGCACTGCTGACC 60.672 57.895 0.00 3.84 0.00 4.02
1594 1693 3.825160 TTGGACGCACTGCTGACCC 62.825 63.158 0.00 2.00 0.00 4.46
1595 1694 4.314440 GGACGCACTGCTGACCCA 62.314 66.667 0.00 0.00 0.00 4.51
1596 1695 2.280797 GACGCACTGCTGACCCAA 60.281 61.111 0.00 0.00 0.00 4.12
1597 1696 1.891919 GACGCACTGCTGACCCAAA 60.892 57.895 0.00 0.00 0.00 3.28
1598 1697 1.228245 ACGCACTGCTGACCCAAAT 60.228 52.632 0.00 0.00 0.00 2.32
1599 1698 0.036164 ACGCACTGCTGACCCAAATA 59.964 50.000 0.00 0.00 0.00 1.40
1600 1699 0.447801 CGCACTGCTGACCCAAATAC 59.552 55.000 0.00 0.00 0.00 1.89
1601 1700 1.533625 GCACTGCTGACCCAAATACA 58.466 50.000 0.00 0.00 0.00 2.29
1602 1701 1.885887 GCACTGCTGACCCAAATACAA 59.114 47.619 0.00 0.00 0.00 2.41
1603 1702 2.295909 GCACTGCTGACCCAAATACAAA 59.704 45.455 0.00 0.00 0.00 2.83
1604 1703 3.243704 GCACTGCTGACCCAAATACAAAA 60.244 43.478 0.00 0.00 0.00 2.44
1605 1704 4.298332 CACTGCTGACCCAAATACAAAAC 58.702 43.478 0.00 0.00 0.00 2.43
1606 1705 3.957497 ACTGCTGACCCAAATACAAAACA 59.043 39.130 0.00 0.00 0.00 2.83
1607 1706 4.037923 ACTGCTGACCCAAATACAAAACAG 59.962 41.667 0.00 0.00 0.00 3.16
1608 1707 3.320541 TGCTGACCCAAATACAAAACAGG 59.679 43.478 0.00 0.00 0.00 4.00
1609 1708 3.306019 GCTGACCCAAATACAAAACAGGG 60.306 47.826 0.00 0.00 42.07 4.45
1610 1709 2.630580 TGACCCAAATACAAAACAGGGC 59.369 45.455 0.00 0.00 39.97 5.19
1611 1710 1.616374 ACCCAAATACAAAACAGGGCG 59.384 47.619 0.00 0.00 39.97 6.13
1612 1711 1.067213 CCCAAATACAAAACAGGGCGG 60.067 52.381 0.00 0.00 0.00 6.13
1613 1712 1.889829 CCAAATACAAAACAGGGCGGA 59.110 47.619 0.00 0.00 0.00 5.54
1614 1713 2.352323 CCAAATACAAAACAGGGCGGAC 60.352 50.000 0.00 0.00 0.00 4.79
1615 1714 1.161843 AATACAAAACAGGGCGGACG 58.838 50.000 0.00 0.00 0.00 4.79
1616 1715 0.035739 ATACAAAACAGGGCGGACGT 59.964 50.000 0.00 0.00 0.00 4.34
1617 1716 0.600782 TACAAAACAGGGCGGACGTC 60.601 55.000 7.13 7.13 0.00 4.34
1618 1717 2.663852 AAAACAGGGCGGACGTCG 60.664 61.111 9.92 6.26 42.76 5.12
1619 1718 4.675029 AAACAGGGCGGACGTCGG 62.675 66.667 17.98 17.98 39.69 4.79
1639 1738 3.961414 GGGAGGCCGACCCAAACA 61.961 66.667 28.20 0.00 46.05 2.83
1640 1739 2.359975 GGAGGCCGACCCAAACAG 60.360 66.667 10.32 0.00 36.11 3.16
1641 1740 2.747686 GAGGCCGACCCAAACAGA 59.252 61.111 0.00 0.00 36.11 3.41
1642 1741 1.671379 GAGGCCGACCCAAACAGAC 60.671 63.158 0.00 0.00 36.11 3.51
1643 1742 2.112297 GGCCGACCCAAACAGACA 59.888 61.111 0.00 0.00 0.00 3.41
1644 1743 1.303317 GGCCGACCCAAACAGACAT 60.303 57.895 0.00 0.00 0.00 3.06
1645 1744 0.035820 GGCCGACCCAAACAGACATA 60.036 55.000 0.00 0.00 0.00 2.29
1646 1745 1.612199 GGCCGACCCAAACAGACATAA 60.612 52.381 0.00 0.00 0.00 1.90
1647 1746 2.156098 GCCGACCCAAACAGACATAAA 58.844 47.619 0.00 0.00 0.00 1.40
1648 1747 2.161609 GCCGACCCAAACAGACATAAAG 59.838 50.000 0.00 0.00 0.00 1.85
1649 1748 2.161609 CCGACCCAAACAGACATAAAGC 59.838 50.000 0.00 0.00 0.00 3.51
1650 1749 2.159707 CGACCCAAACAGACATAAAGCG 60.160 50.000 0.00 0.00 0.00 4.68
1651 1750 2.159382 ACCCAAACAGACATAAAGCGG 58.841 47.619 0.00 0.00 0.00 5.52
1652 1751 2.224670 ACCCAAACAGACATAAAGCGGA 60.225 45.455 0.00 0.00 0.00 5.54
1653 1752 2.161609 CCCAAACAGACATAAAGCGGAC 59.838 50.000 0.00 0.00 0.00 4.79
1654 1753 2.811431 CCAAACAGACATAAAGCGGACA 59.189 45.455 0.00 0.00 0.00 4.02
1655 1754 3.252215 CCAAACAGACATAAAGCGGACAA 59.748 43.478 0.00 0.00 0.00 3.18
1656 1755 4.261405 CCAAACAGACATAAAGCGGACAAA 60.261 41.667 0.00 0.00 0.00 2.83
1657 1756 5.460646 CAAACAGACATAAAGCGGACAAAT 58.539 37.500 0.00 0.00 0.00 2.32
1658 1757 4.685169 ACAGACATAAAGCGGACAAATG 57.315 40.909 0.00 0.00 0.00 2.32
1659 1758 3.119849 ACAGACATAAAGCGGACAAATGC 60.120 43.478 0.00 0.00 0.00 3.56
1660 1759 3.081061 AGACATAAAGCGGACAAATGCA 58.919 40.909 0.00 0.00 0.00 3.96
1661 1760 3.119849 AGACATAAAGCGGACAAATGCAC 60.120 43.478 0.00 0.00 0.00 4.57
1662 1761 2.094752 ACATAAAGCGGACAAATGCACC 60.095 45.455 0.00 0.00 0.00 5.01
1664 1763 1.452145 AAAGCGGACAAATGCACCGT 61.452 50.000 13.47 0.00 46.95 4.83
1665 1764 1.852067 AAGCGGACAAATGCACCGTC 61.852 55.000 13.47 8.66 46.95 4.79
1666 1765 2.325082 GCGGACAAATGCACCGTCT 61.325 57.895 13.47 0.00 46.95 4.18
1667 1766 1.497278 CGGACAAATGCACCGTCTG 59.503 57.895 4.61 5.62 41.47 3.51
1668 1767 1.227999 CGGACAAATGCACCGTCTGT 61.228 55.000 11.05 1.26 41.47 3.41
1669 1768 0.951558 GGACAAATGCACCGTCTGTT 59.048 50.000 10.73 0.00 0.00 3.16
1670 1769 1.336755 GGACAAATGCACCGTCTGTTT 59.663 47.619 10.73 0.00 0.00 2.83
1671 1770 2.384382 GACAAATGCACCGTCTGTTTG 58.616 47.619 5.39 5.39 36.23 2.93
1672 1771 1.066908 ACAAATGCACCGTCTGTTTGG 59.933 47.619 10.49 0.00 34.87 3.28
1673 1772 0.673437 AAATGCACCGTCTGTTTGGG 59.327 50.000 0.00 0.00 0.00 4.12
1674 1773 0.467290 AATGCACCGTCTGTTTGGGT 60.467 50.000 0.00 0.00 33.37 4.51
1675 1774 0.889186 ATGCACCGTCTGTTTGGGTC 60.889 55.000 0.00 0.00 29.82 4.46
1676 1775 2.604174 GCACCGTCTGTTTGGGTCG 61.604 63.158 0.00 0.00 29.82 4.79
1677 1776 1.959226 CACCGTCTGTTTGGGTCGG 60.959 63.158 0.00 0.00 45.53 4.79
1678 1777 3.047877 CCGTCTGTTTGGGTCGGC 61.048 66.667 0.00 0.00 35.01 5.54
1679 1778 3.047877 CGTCTGTTTGGGTCGGCC 61.048 66.667 0.00 0.00 0.00 6.13
1688 1787 4.324991 GGGTCGGCCCGTTGAAGT 62.325 66.667 10.71 0.00 46.51 3.01
1689 1788 2.281276 GGTCGGCCCGTTGAAGTT 60.281 61.111 1.63 0.00 0.00 2.66
1690 1789 2.613506 GGTCGGCCCGTTGAAGTTG 61.614 63.158 1.63 0.00 0.00 3.16
1691 1790 2.975799 TCGGCCCGTTGAAGTTGC 60.976 61.111 1.63 0.00 0.00 4.17
1692 1791 2.978010 CGGCCCGTTGAAGTTGCT 60.978 61.111 0.00 0.00 0.00 3.91
1693 1792 2.954611 GGCCCGTTGAAGTTGCTC 59.045 61.111 0.00 0.00 0.00 4.26
1694 1793 1.600916 GGCCCGTTGAAGTTGCTCT 60.601 57.895 0.00 0.00 0.00 4.09
1695 1794 0.321298 GGCCCGTTGAAGTTGCTCTA 60.321 55.000 0.00 0.00 0.00 2.43
1696 1795 1.519408 GCCCGTTGAAGTTGCTCTAA 58.481 50.000 0.00 0.00 0.00 2.10
1697 1796 1.464997 GCCCGTTGAAGTTGCTCTAAG 59.535 52.381 0.00 0.00 0.00 2.18
1698 1797 2.767505 CCCGTTGAAGTTGCTCTAAGT 58.232 47.619 0.00 0.00 0.00 2.24
1699 1798 2.480419 CCCGTTGAAGTTGCTCTAAGTG 59.520 50.000 0.00 0.00 0.00 3.16
1700 1799 3.390135 CCGTTGAAGTTGCTCTAAGTGA 58.610 45.455 0.00 0.00 0.00 3.41
1701 1800 3.184581 CCGTTGAAGTTGCTCTAAGTGAC 59.815 47.826 0.00 0.00 0.00 3.67
1702 1801 3.184581 CGTTGAAGTTGCTCTAAGTGACC 59.815 47.826 0.00 0.00 0.00 4.02
1703 1802 3.026630 TGAAGTTGCTCTAAGTGACCG 57.973 47.619 0.00 0.00 0.00 4.79
1704 1803 2.288825 TGAAGTTGCTCTAAGTGACCGG 60.289 50.000 0.00 0.00 0.00 5.28
1705 1804 1.629043 AGTTGCTCTAAGTGACCGGA 58.371 50.000 9.46 0.00 0.00 5.14
1706 1805 1.272769 AGTTGCTCTAAGTGACCGGAC 59.727 52.381 9.46 1.07 0.00 4.79
1707 1806 0.606604 TTGCTCTAAGTGACCGGACC 59.393 55.000 9.46 0.00 0.00 4.46
1708 1807 1.139095 GCTCTAAGTGACCGGACCG 59.861 63.158 9.46 6.99 0.00 4.79
1709 1808 1.593296 GCTCTAAGTGACCGGACCGT 61.593 60.000 9.46 0.36 0.00 4.83
1710 1809 0.450983 CTCTAAGTGACCGGACCGTC 59.549 60.000 9.46 10.94 0.00 4.79
1711 1810 0.037303 TCTAAGTGACCGGACCGTCT 59.963 55.000 9.46 2.87 33.70 4.18
1712 1811 0.170561 CTAAGTGACCGGACCGTCTG 59.829 60.000 9.46 0.00 33.70 3.51
1713 1812 0.538057 TAAGTGACCGGACCGTCTGT 60.538 55.000 9.46 3.23 33.70 3.41
1714 1813 1.803366 AAGTGACCGGACCGTCTGTC 61.803 60.000 9.46 13.43 43.67 3.51
1727 1826 3.226346 CGTCTGTCCGGACATTTAAGA 57.774 47.619 36.21 25.86 41.01 2.10
1728 1827 3.179830 CGTCTGTCCGGACATTTAAGAG 58.820 50.000 36.21 22.59 41.01 2.85
1729 1828 3.522553 GTCTGTCCGGACATTTAAGAGG 58.477 50.000 36.21 21.86 41.01 3.69
1730 1829 2.500098 TCTGTCCGGACATTTAAGAGGG 59.500 50.000 36.21 21.16 41.01 4.30
1731 1830 1.557832 TGTCCGGACATTTAAGAGGGG 59.442 52.381 33.23 0.00 36.21 4.79
1732 1831 1.134189 GTCCGGACATTTAAGAGGGGG 60.134 57.143 29.75 0.00 0.00 5.40
1733 1832 0.916809 CCGGACATTTAAGAGGGGGT 59.083 55.000 0.00 0.00 0.00 4.95
1734 1833 1.283905 CCGGACATTTAAGAGGGGGTT 59.716 52.381 0.00 0.00 0.00 4.11
1735 1834 2.291346 CCGGACATTTAAGAGGGGGTTT 60.291 50.000 0.00 0.00 0.00 3.27
1736 1835 2.752903 CGGACATTTAAGAGGGGGTTTG 59.247 50.000 0.00 0.00 0.00 2.93
1737 1836 3.096852 GGACATTTAAGAGGGGGTTTGG 58.903 50.000 0.00 0.00 0.00 3.28
1738 1837 3.096852 GACATTTAAGAGGGGGTTTGGG 58.903 50.000 0.00 0.00 0.00 4.12
1739 1838 2.225522 ACATTTAAGAGGGGGTTTGGGG 60.226 50.000 0.00 0.00 0.00 4.96
1740 1839 1.548268 TTTAAGAGGGGGTTTGGGGT 58.452 50.000 0.00 0.00 0.00 4.95
1741 1840 0.781278 TTAAGAGGGGGTTTGGGGTG 59.219 55.000 0.00 0.00 0.00 4.61
1742 1841 0.403750 TAAGAGGGGGTTTGGGGTGT 60.404 55.000 0.00 0.00 0.00 4.16
1743 1842 1.726192 AAGAGGGGGTTTGGGGTGTC 61.726 60.000 0.00 0.00 0.00 3.67
1744 1843 3.190391 AGGGGGTTTGGGGTGTCC 61.190 66.667 0.00 0.00 0.00 4.02
1745 1844 4.671590 GGGGGTTTGGGGTGTCCG 62.672 72.222 0.00 0.00 38.76 4.79
1746 1845 4.671590 GGGGTTTGGGGTGTCCGG 62.672 72.222 0.00 0.00 38.76 5.14
1748 1847 4.280019 GGTTTGGGGTGTCCGGCT 62.280 66.667 0.00 0.00 38.76 5.52
1749 1848 2.671963 GTTTGGGGTGTCCGGCTC 60.672 66.667 0.00 0.00 38.76 4.70
1750 1849 2.852075 TTTGGGGTGTCCGGCTCT 60.852 61.111 0.00 0.00 38.76 4.09
1751 1850 1.536907 TTTGGGGTGTCCGGCTCTA 60.537 57.895 0.00 0.00 38.76 2.43
1752 1851 0.912487 TTTGGGGTGTCCGGCTCTAT 60.912 55.000 0.00 0.00 38.76 1.98
1753 1852 1.622607 TTGGGGTGTCCGGCTCTATG 61.623 60.000 0.00 0.00 38.76 2.23
1754 1853 2.109181 GGGTGTCCGGCTCTATGC 59.891 66.667 0.00 0.00 41.94 3.14
1755 1854 2.435693 GGGTGTCCGGCTCTATGCT 61.436 63.158 0.00 0.00 42.39 3.79
1820 1919 2.627221 TCTCCTCTCATACATGCTGAGC 59.373 50.000 17.13 0.00 39.98 4.26
1909 2008 5.012768 AGCTTAGACTTTGTTTGGTAGCCTA 59.987 40.000 0.00 0.00 0.00 3.93
1920 2019 6.242396 TGTTTGGTAGCCTACATGTGTTTAT 58.758 36.000 9.11 0.00 0.00 1.40
1945 2044 6.527423 ACATGCTGAACAATTTTGAATTCCT 58.473 32.000 2.27 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.947147 GGTCAGCGTGTTGGGCCA 62.947 66.667 0.00 0.00 0.00 5.36
12 13 2.280592 GTCCGTTTGGGTCAGCGT 60.281 61.111 0.00 0.00 37.00 5.07
51 53 2.670148 GGTCAGGAATGGGTCGCCT 61.670 63.158 0.00 0.00 0.00 5.52
269 309 2.167861 GTCTTCATGCCGGACGAGC 61.168 63.158 5.05 0.00 0.00 5.03
390 430 1.043673 GCCTCCGGCTCTTCCTCTTA 61.044 60.000 0.00 0.00 46.69 2.10
416 456 3.691342 CTTCACCCCTCGCGTCCA 61.691 66.667 5.77 0.00 0.00 4.02
541 605 2.824041 GGCCACGGCGATGTTGAT 60.824 61.111 16.62 0.00 43.06 2.57
597 662 4.687215 GGCGAGTCAGGCAGCACA 62.687 66.667 0.00 0.00 36.61 4.57
902 988 1.029681 TGTCTCGTCGGGGTCATATG 58.970 55.000 0.00 0.00 0.00 1.78
903 989 1.030457 GTGTCTCGTCGGGGTCATAT 58.970 55.000 0.00 0.00 0.00 1.78
965 1051 2.013563 GCATGAAGGCCGACTGATCAA 61.014 52.381 0.00 0.00 0.00 2.57
1182 1280 1.532868 CTCCAACACTCGCAAAGAAGG 59.467 52.381 0.00 0.00 0.00 3.46
1315 1414 1.578206 AAAAAGAAGGCTCTCGCGGC 61.578 55.000 6.13 0.65 36.88 6.53
1316 1415 2.544726 AAAAAGAAGGCTCTCGCGG 58.455 52.632 6.13 0.00 36.88 6.46
1332 1431 2.603412 CGCACAAGTCGGCATACAAAAA 60.603 45.455 0.00 0.00 0.00 1.94
1333 1432 1.069568 CGCACAAGTCGGCATACAAAA 60.070 47.619 0.00 0.00 0.00 2.44
1334 1433 0.515127 CGCACAAGTCGGCATACAAA 59.485 50.000 0.00 0.00 0.00 2.83
1335 1434 1.906994 GCGCACAAGTCGGCATACAA 61.907 55.000 0.30 0.00 0.00 2.41
1336 1435 2.387445 GCGCACAAGTCGGCATACA 61.387 57.895 0.30 0.00 0.00 2.29
1337 1436 2.100631 AGCGCACAAGTCGGCATAC 61.101 57.895 11.47 0.00 0.00 2.39
1338 1437 2.100031 CAGCGCACAAGTCGGCATA 61.100 57.895 11.47 0.00 0.00 3.14
1339 1438 3.425713 CAGCGCACAAGTCGGCAT 61.426 61.111 11.47 0.00 0.00 4.40
1355 1454 4.408821 GGCCTCGTGGTCATGCCA 62.409 66.667 2.61 4.93 46.95 4.92
1371 1470 3.925362 TTCGACCACGCCATCACGG 62.925 63.158 0.00 0.00 39.58 4.94
1372 1471 2.431771 TTCGACCACGCCATCACG 60.432 61.111 0.00 0.00 39.58 4.35
1373 1472 1.352156 GAGTTCGACCACGCCATCAC 61.352 60.000 0.00 0.00 39.58 3.06
1374 1473 1.080093 GAGTTCGACCACGCCATCA 60.080 57.895 0.00 0.00 39.58 3.07
1375 1474 0.669318 TTGAGTTCGACCACGCCATC 60.669 55.000 0.00 0.00 39.58 3.51
1376 1475 0.670546 CTTGAGTTCGACCACGCCAT 60.671 55.000 0.00 0.00 39.58 4.40
1377 1476 1.300620 CTTGAGTTCGACCACGCCA 60.301 57.895 0.00 0.00 39.58 5.69
1378 1477 1.282930 GACTTGAGTTCGACCACGCC 61.283 60.000 0.00 0.00 39.58 5.68
1379 1478 1.282930 GGACTTGAGTTCGACCACGC 61.283 60.000 0.00 0.00 39.58 5.34
1380 1479 0.666577 GGGACTTGAGTTCGACCACG 60.667 60.000 0.00 0.00 41.26 4.94
1381 1480 0.391597 TGGGACTTGAGTTCGACCAC 59.608 55.000 0.00 0.00 0.00 4.16
1382 1481 0.391597 GTGGGACTTGAGTTCGACCA 59.608 55.000 0.00 0.00 0.00 4.02
1383 1482 0.320508 GGTGGGACTTGAGTTCGACC 60.321 60.000 7.72 7.72 43.60 4.79
1384 1483 0.320508 GGGTGGGACTTGAGTTCGAC 60.321 60.000 0.00 0.00 32.27 4.20
1385 1484 1.477685 GGGGTGGGACTTGAGTTCGA 61.478 60.000 0.00 0.00 0.00 3.71
1386 1485 1.003718 GGGGTGGGACTTGAGTTCG 60.004 63.158 0.00 0.00 0.00 3.95
1387 1486 0.771755 AAGGGGTGGGACTTGAGTTC 59.228 55.000 0.00 0.00 0.00 3.01
1388 1487 1.231963 AAAGGGGTGGGACTTGAGTT 58.768 50.000 0.00 0.00 0.00 3.01
1389 1488 1.231963 AAAAGGGGTGGGACTTGAGT 58.768 50.000 0.00 0.00 0.00 3.41
1390 1489 1.963515 CAAAAAGGGGTGGGACTTGAG 59.036 52.381 0.00 0.00 0.00 3.02
1391 1490 1.289530 ACAAAAAGGGGTGGGACTTGA 59.710 47.619 0.00 0.00 0.00 3.02
1392 1491 1.412343 CACAAAAAGGGGTGGGACTTG 59.588 52.381 0.00 0.00 0.00 3.16
1393 1492 1.007842 ACACAAAAAGGGGTGGGACTT 59.992 47.619 0.00 0.00 39.31 3.01
1394 1493 0.634465 ACACAAAAAGGGGTGGGACT 59.366 50.000 0.00 0.00 39.31 3.85
1395 1494 0.750249 CACACAAAAAGGGGTGGGAC 59.250 55.000 0.00 0.00 40.89 4.46
1396 1495 1.045911 GCACACAAAAAGGGGTGGGA 61.046 55.000 0.00 0.00 40.89 4.37
1397 1496 1.048160 AGCACACAAAAAGGGGTGGG 61.048 55.000 0.00 0.00 41.34 4.61
1398 1497 0.104671 CAGCACACAAAAAGGGGTGG 59.895 55.000 0.00 0.00 39.31 4.61
1399 1498 0.104671 CCAGCACACAAAAAGGGGTG 59.895 55.000 0.00 0.00 40.78 4.61
1400 1499 1.685355 GCCAGCACACAAAAAGGGGT 61.685 55.000 0.00 0.00 0.00 4.95
1401 1500 1.069596 GCCAGCACACAAAAAGGGG 59.930 57.895 0.00 0.00 0.00 4.79
1402 1501 0.393820 ATGCCAGCACACAAAAAGGG 59.606 50.000 0.00 0.00 0.00 3.95
1403 1502 1.202557 ACATGCCAGCACACAAAAAGG 60.203 47.619 0.00 0.00 0.00 3.11
1404 1503 1.862201 CACATGCCAGCACACAAAAAG 59.138 47.619 0.00 0.00 0.00 2.27
1405 1504 1.206610 ACACATGCCAGCACACAAAAA 59.793 42.857 0.00 0.00 0.00 1.94
1406 1505 0.822811 ACACATGCCAGCACACAAAA 59.177 45.000 0.00 0.00 0.00 2.44
1407 1506 0.102663 CACACATGCCAGCACACAAA 59.897 50.000 0.00 0.00 0.00 2.83
1408 1507 1.734748 CACACATGCCAGCACACAA 59.265 52.632 0.00 0.00 0.00 3.33
1409 1508 2.847754 GCACACATGCCAGCACACA 61.848 57.895 0.00 0.00 46.97 3.72
1410 1509 2.049802 GCACACATGCCAGCACAC 60.050 61.111 0.00 0.00 46.97 3.82
1438 1537 0.458543 AGTTCATGCTGGCGTACTCG 60.459 55.000 0.00 0.00 40.37 4.18
1439 1538 1.002366 CAGTTCATGCTGGCGTACTC 58.998 55.000 0.00 0.00 33.11 2.59
1440 1539 0.321671 ACAGTTCATGCTGGCGTACT 59.678 50.000 5.48 0.00 40.59 2.73
1441 1540 0.443869 CACAGTTCATGCTGGCGTAC 59.556 55.000 5.48 0.00 40.59 3.67
1442 1541 0.034756 ACACAGTTCATGCTGGCGTA 59.965 50.000 5.48 0.00 40.59 4.42
1443 1542 1.227943 ACACAGTTCATGCTGGCGT 60.228 52.632 5.48 0.14 40.59 5.68
1444 1543 1.208358 CACACAGTTCATGCTGGCG 59.792 57.895 5.48 0.00 40.59 5.69
1445 1544 1.174712 ACCACACAGTTCATGCTGGC 61.175 55.000 5.48 0.00 40.59 4.85
1446 1545 0.594602 CACCACACAGTTCATGCTGG 59.405 55.000 5.48 0.00 40.59 4.85
1447 1546 0.039798 GCACCACACAGTTCATGCTG 60.040 55.000 0.00 0.00 41.92 4.41
1448 1547 0.466007 TGCACCACACAGTTCATGCT 60.466 50.000 0.00 0.00 34.18 3.79
1449 1548 0.599558 ATGCACCACACAGTTCATGC 59.400 50.000 0.00 0.00 0.00 4.06
1450 1549 3.374220 AAATGCACCACACAGTTCATG 57.626 42.857 0.00 0.00 0.00 3.07
1451 1550 4.405116 AAAAATGCACCACACAGTTCAT 57.595 36.364 0.00 0.00 0.00 2.57
1452 1551 3.883830 AAAAATGCACCACACAGTTCA 57.116 38.095 0.00 0.00 0.00 3.18
1469 1568 3.995705 GCATACATTGCCAGCTTCAAAAA 59.004 39.130 2.65 0.00 46.15 1.94
1470 1569 3.587923 GCATACATTGCCAGCTTCAAAA 58.412 40.909 2.65 0.00 46.15 2.44
1471 1570 3.235157 GCATACATTGCCAGCTTCAAA 57.765 42.857 2.65 0.00 46.15 2.69
1472 1571 2.945447 GCATACATTGCCAGCTTCAA 57.055 45.000 1.12 1.12 46.15 2.69
1482 1581 0.588252 GCTAGTGCCGGCATACATTG 59.412 55.000 35.23 19.61 0.00 2.82
1483 1582 0.180171 TGCTAGTGCCGGCATACATT 59.820 50.000 35.23 17.85 38.71 2.71
1484 1583 0.180171 TTGCTAGTGCCGGCATACAT 59.820 50.000 35.23 20.88 38.30 2.29
1485 1584 0.180171 ATTGCTAGTGCCGGCATACA 59.820 50.000 35.23 24.19 38.30 2.29
1486 1585 0.588252 CATTGCTAGTGCCGGCATAC 59.412 55.000 35.23 21.47 38.30 2.39
1487 1586 0.467804 TCATTGCTAGTGCCGGCATA 59.532 50.000 35.23 22.91 38.30 3.14
1488 1587 0.179009 ATCATTGCTAGTGCCGGCAT 60.179 50.000 35.23 23.03 38.30 4.40
1489 1588 1.096967 CATCATTGCTAGTGCCGGCA 61.097 55.000 29.03 29.03 38.71 5.69
1490 1589 1.650912 CATCATTGCTAGTGCCGGC 59.349 57.895 22.73 22.73 38.71 6.13
1491 1590 1.650912 GCATCATTGCTAGTGCCGG 59.349 57.895 0.00 0.00 45.77 6.13
1500 1599 5.181433 ACATAGATCATGTCAGCATCATTGC 59.819 40.000 0.00 0.00 44.99 3.56
1501 1600 6.803154 ACATAGATCATGTCAGCATCATTG 57.197 37.500 0.00 0.00 44.99 2.82
1513 1612 1.344458 GCTCGCGGACATAGATCATG 58.656 55.000 6.13 0.00 40.78 3.07
1514 1613 0.244994 GGCTCGCGGACATAGATCAT 59.755 55.000 6.13 0.00 0.00 2.45
1515 1614 0.823769 AGGCTCGCGGACATAGATCA 60.824 55.000 6.13 0.00 0.00 2.92
1516 1615 0.315568 AAGGCTCGCGGACATAGATC 59.684 55.000 6.13 0.00 0.00 2.75
1517 1616 0.753262 AAAGGCTCGCGGACATAGAT 59.247 50.000 6.13 0.00 0.00 1.98
1518 1617 0.535335 AAAAGGCTCGCGGACATAGA 59.465 50.000 6.13 0.00 0.00 1.98
1519 1618 1.369625 AAAAAGGCTCGCGGACATAG 58.630 50.000 6.13 0.00 0.00 2.23
1520 1619 2.676632 TAAAAAGGCTCGCGGACATA 57.323 45.000 6.13 0.00 0.00 2.29
1521 1620 1.816074 TTAAAAAGGCTCGCGGACAT 58.184 45.000 6.13 0.00 0.00 3.06
1522 1621 1.595466 TTTAAAAAGGCTCGCGGACA 58.405 45.000 6.13 0.00 0.00 4.02
1523 1622 2.691984 TTTTAAAAAGGCTCGCGGAC 57.308 45.000 6.13 0.00 0.00 4.79
1524 1623 3.926821 ATTTTTAAAAAGGCTCGCGGA 57.073 38.095 17.72 0.00 0.00 5.54
1525 1624 4.983215 AAATTTTTAAAAAGGCTCGCGG 57.017 36.364 17.72 0.00 0.00 6.46
1526 1625 7.001347 CACTTAAATTTTTAAAAAGGCTCGCG 58.999 34.615 17.72 0.00 32.73 5.87
1527 1626 6.790350 GCACTTAAATTTTTAAAAAGGCTCGC 59.210 34.615 17.72 10.64 32.73 5.03
1528 1627 7.001347 CGCACTTAAATTTTTAAAAAGGCTCG 58.999 34.615 17.72 9.20 32.73 5.03
1529 1628 7.170151 TCCGCACTTAAATTTTTAAAAAGGCTC 59.830 33.333 17.72 2.76 32.73 4.70
1530 1629 6.987404 TCCGCACTTAAATTTTTAAAAAGGCT 59.013 30.769 17.72 7.99 32.73 4.58
1531 1630 7.067116 GTCCGCACTTAAATTTTTAAAAAGGC 58.933 34.615 17.72 11.06 32.73 4.35
1532 1631 8.132604 TGTCCGCACTTAAATTTTTAAAAAGG 57.867 30.769 17.72 10.47 32.73 3.11
1533 1632 9.579610 CATGTCCGCACTTAAATTTTTAAAAAG 57.420 29.630 17.72 7.18 32.73 2.27
1534 1633 9.314321 TCATGTCCGCACTTAAATTTTTAAAAA 57.686 25.926 15.38 15.38 32.73 1.94
1535 1634 8.873215 TCATGTCCGCACTTAAATTTTTAAAA 57.127 26.923 0.00 0.00 32.73 1.52
1536 1635 8.873215 TTCATGTCCGCACTTAAATTTTTAAA 57.127 26.923 0.00 0.00 32.73 1.52
1537 1636 8.873215 TTTCATGTCCGCACTTAAATTTTTAA 57.127 26.923 0.00 0.00 0.00 1.52
1538 1637 8.873215 TTTTCATGTCCGCACTTAAATTTTTA 57.127 26.923 0.00 0.00 0.00 1.52
1539 1638 7.778470 TTTTCATGTCCGCACTTAAATTTTT 57.222 28.000 0.00 0.00 0.00 1.94
1540 1639 7.095271 CCATTTTCATGTCCGCACTTAAATTTT 60.095 33.333 0.00 0.00 0.00 1.82
1541 1640 6.368516 CCATTTTCATGTCCGCACTTAAATTT 59.631 34.615 0.00 0.00 0.00 1.82
1542 1641 5.868801 CCATTTTCATGTCCGCACTTAAATT 59.131 36.000 0.00 0.00 0.00 1.82
1543 1642 5.410067 CCATTTTCATGTCCGCACTTAAAT 58.590 37.500 0.00 0.00 0.00 1.40
1544 1643 4.321601 CCCATTTTCATGTCCGCACTTAAA 60.322 41.667 0.00 0.00 0.00 1.52
1545 1644 3.192422 CCCATTTTCATGTCCGCACTTAA 59.808 43.478 0.00 0.00 0.00 1.85
1546 1645 2.752354 CCCATTTTCATGTCCGCACTTA 59.248 45.455 0.00 0.00 0.00 2.24
1547 1646 1.545582 CCCATTTTCATGTCCGCACTT 59.454 47.619 0.00 0.00 0.00 3.16
1548 1647 1.176527 CCCATTTTCATGTCCGCACT 58.823 50.000 0.00 0.00 0.00 4.40
1549 1648 0.887933 ACCCATTTTCATGTCCGCAC 59.112 50.000 0.00 0.00 0.00 5.34
1550 1649 1.271934 CAACCCATTTTCATGTCCGCA 59.728 47.619 0.00 0.00 0.00 5.69
1551 1650 1.404047 CCAACCCATTTTCATGTCCGC 60.404 52.381 0.00 0.00 0.00 5.54
1552 1651 1.404047 GCCAACCCATTTTCATGTCCG 60.404 52.381 0.00 0.00 0.00 4.79
1553 1652 1.404047 CGCCAACCCATTTTCATGTCC 60.404 52.381 0.00 0.00 0.00 4.02
1554 1653 1.994916 CGCCAACCCATTTTCATGTC 58.005 50.000 0.00 0.00 0.00 3.06
1555 1654 0.037419 GCGCCAACCCATTTTCATGT 60.037 50.000 0.00 0.00 0.00 3.21
1556 1655 0.037512 TGCGCCAACCCATTTTCATG 60.038 50.000 4.18 0.00 0.00 3.07
1557 1656 0.903942 ATGCGCCAACCCATTTTCAT 59.096 45.000 4.18 0.00 0.00 2.57
1558 1657 0.683973 AATGCGCCAACCCATTTTCA 59.316 45.000 4.18 0.00 0.00 2.69
1559 1658 1.077915 CAATGCGCCAACCCATTTTC 58.922 50.000 4.18 0.00 29.71 2.29
1560 1659 0.321475 CCAATGCGCCAACCCATTTT 60.321 50.000 4.18 0.00 29.71 1.82
1561 1660 1.190833 TCCAATGCGCCAACCCATTT 61.191 50.000 4.18 0.00 29.71 2.32
1562 1661 1.608918 TCCAATGCGCCAACCCATT 60.609 52.632 4.18 0.00 32.20 3.16
1563 1662 2.037049 TCCAATGCGCCAACCCAT 59.963 55.556 4.18 0.00 0.00 4.00
1564 1663 2.988684 GTCCAATGCGCCAACCCA 60.989 61.111 4.18 0.00 0.00 4.51
1565 1664 4.114997 CGTCCAATGCGCCAACCC 62.115 66.667 4.18 0.00 0.00 4.11
1574 1673 1.499056 GTCAGCAGTGCGTCCAATG 59.501 57.895 10.00 1.03 39.88 2.82
1575 1674 1.672356 GGTCAGCAGTGCGTCCAAT 60.672 57.895 10.00 0.00 0.00 3.16
1576 1675 2.280797 GGTCAGCAGTGCGTCCAA 60.281 61.111 10.00 0.00 0.00 3.53
1577 1676 4.314440 GGGTCAGCAGTGCGTCCA 62.314 66.667 21.16 2.30 0.00 4.02
1578 1677 3.825160 TTGGGTCAGCAGTGCGTCC 62.825 63.158 10.00 12.92 0.00 4.79
1579 1678 1.237285 ATTTGGGTCAGCAGTGCGTC 61.237 55.000 10.00 4.13 0.00 5.19
1580 1679 0.036164 TATTTGGGTCAGCAGTGCGT 59.964 50.000 10.00 0.00 0.00 5.24
1581 1680 0.447801 GTATTTGGGTCAGCAGTGCG 59.552 55.000 10.00 5.01 0.00 5.34
1582 1681 1.533625 TGTATTTGGGTCAGCAGTGC 58.466 50.000 7.13 7.13 0.00 4.40
1583 1682 4.202101 TGTTTTGTATTTGGGTCAGCAGTG 60.202 41.667 0.00 0.00 0.00 3.66
1584 1683 3.957497 TGTTTTGTATTTGGGTCAGCAGT 59.043 39.130 0.00 0.00 0.00 4.40
1585 1684 4.549458 CTGTTTTGTATTTGGGTCAGCAG 58.451 43.478 0.00 0.00 0.00 4.24
1586 1685 3.320541 CCTGTTTTGTATTTGGGTCAGCA 59.679 43.478 0.00 0.00 0.00 4.41
1587 1686 3.306019 CCCTGTTTTGTATTTGGGTCAGC 60.306 47.826 0.00 0.00 0.00 4.26
1588 1687 3.306019 GCCCTGTTTTGTATTTGGGTCAG 60.306 47.826 0.00 0.00 37.09 3.51
1589 1688 2.630580 GCCCTGTTTTGTATTTGGGTCA 59.369 45.455 0.00 0.00 37.09 4.02
1590 1689 2.352323 CGCCCTGTTTTGTATTTGGGTC 60.352 50.000 0.00 0.00 37.09 4.46
1591 1690 1.616374 CGCCCTGTTTTGTATTTGGGT 59.384 47.619 0.00 0.00 37.09 4.51
1592 1691 1.067213 CCGCCCTGTTTTGTATTTGGG 60.067 52.381 0.00 0.00 37.76 4.12
1593 1692 1.889829 TCCGCCCTGTTTTGTATTTGG 59.110 47.619 0.00 0.00 0.00 3.28
1594 1693 2.667171 CGTCCGCCCTGTTTTGTATTTG 60.667 50.000 0.00 0.00 0.00 2.32
1595 1694 1.538075 CGTCCGCCCTGTTTTGTATTT 59.462 47.619 0.00 0.00 0.00 1.40
1596 1695 1.161843 CGTCCGCCCTGTTTTGTATT 58.838 50.000 0.00 0.00 0.00 1.89
1597 1696 0.035739 ACGTCCGCCCTGTTTTGTAT 59.964 50.000 0.00 0.00 0.00 2.29
1598 1697 0.600782 GACGTCCGCCCTGTTTTGTA 60.601 55.000 3.51 0.00 0.00 2.41
1599 1698 1.890510 GACGTCCGCCCTGTTTTGT 60.891 57.895 3.51 0.00 0.00 2.83
1600 1699 2.943653 GACGTCCGCCCTGTTTTG 59.056 61.111 3.51 0.00 0.00 2.44
1601 1700 2.663852 CGACGTCCGCCCTGTTTT 60.664 61.111 10.58 0.00 0.00 2.43
1602 1701 4.675029 CCGACGTCCGCCCTGTTT 62.675 66.667 10.58 0.00 36.84 2.83
1622 1721 3.920093 CTGTTTGGGTCGGCCTCCC 62.920 68.421 21.54 21.54 44.81 4.30
1623 1722 2.359975 CTGTTTGGGTCGGCCTCC 60.360 66.667 5.77 2.82 34.45 4.30
1624 1723 1.671379 GTCTGTTTGGGTCGGCCTC 60.671 63.158 5.77 0.00 34.45 4.70
1625 1724 1.779061 ATGTCTGTTTGGGTCGGCCT 61.779 55.000 5.77 0.00 34.45 5.19
1626 1725 0.035820 TATGTCTGTTTGGGTCGGCC 60.036 55.000 0.00 0.00 0.00 6.13
1627 1726 1.816074 TTATGTCTGTTTGGGTCGGC 58.184 50.000 0.00 0.00 0.00 5.54
1628 1727 2.161609 GCTTTATGTCTGTTTGGGTCGG 59.838 50.000 0.00 0.00 0.00 4.79
1629 1728 2.159707 CGCTTTATGTCTGTTTGGGTCG 60.160 50.000 0.00 0.00 0.00 4.79
1630 1729 2.161609 CCGCTTTATGTCTGTTTGGGTC 59.838 50.000 0.00 0.00 0.00 4.46
1631 1730 2.159382 CCGCTTTATGTCTGTTTGGGT 58.841 47.619 0.00 0.00 0.00 4.51
1632 1731 2.161609 GTCCGCTTTATGTCTGTTTGGG 59.838 50.000 0.00 0.00 0.00 4.12
1633 1732 2.811431 TGTCCGCTTTATGTCTGTTTGG 59.189 45.455 0.00 0.00 0.00 3.28
1634 1733 4.481930 TTGTCCGCTTTATGTCTGTTTG 57.518 40.909 0.00 0.00 0.00 2.93
1635 1734 5.460646 CATTTGTCCGCTTTATGTCTGTTT 58.539 37.500 0.00 0.00 0.00 2.83
1636 1735 4.615912 GCATTTGTCCGCTTTATGTCTGTT 60.616 41.667 0.00 0.00 0.00 3.16
1637 1736 3.119849 GCATTTGTCCGCTTTATGTCTGT 60.120 43.478 0.00 0.00 0.00 3.41
1638 1737 3.119884 TGCATTTGTCCGCTTTATGTCTG 60.120 43.478 0.00 0.00 0.00 3.51
1639 1738 3.081061 TGCATTTGTCCGCTTTATGTCT 58.919 40.909 0.00 0.00 0.00 3.41
1640 1739 3.171277 GTGCATTTGTCCGCTTTATGTC 58.829 45.455 0.00 0.00 0.00 3.06
1641 1740 2.094752 GGTGCATTTGTCCGCTTTATGT 60.095 45.455 0.00 0.00 0.00 2.29
1642 1741 2.529151 GGTGCATTTGTCCGCTTTATG 58.471 47.619 0.00 0.00 0.00 1.90
1643 1742 1.132262 CGGTGCATTTGTCCGCTTTAT 59.868 47.619 0.00 0.00 37.90 1.40
1644 1743 0.519519 CGGTGCATTTGTCCGCTTTA 59.480 50.000 0.00 0.00 37.90 1.85
1645 1744 1.285641 CGGTGCATTTGTCCGCTTT 59.714 52.632 0.00 0.00 37.90 3.51
1646 1745 1.852067 GACGGTGCATTTGTCCGCTT 61.852 55.000 12.19 0.00 46.92 4.68
1647 1746 2.281484 ACGGTGCATTTGTCCGCT 60.281 55.556 12.19 0.00 46.92 5.52
1648 1747 2.175811 GACGGTGCATTTGTCCGC 59.824 61.111 12.19 2.64 46.92 5.54
1650 1749 0.951558 AACAGACGGTGCATTTGTCC 59.048 50.000 11.01 0.00 33.09 4.02
1651 1750 2.384382 CAAACAGACGGTGCATTTGTC 58.616 47.619 7.59 7.59 0.00 3.18
1652 1751 1.066908 CCAAACAGACGGTGCATTTGT 59.933 47.619 0.00 0.00 0.00 2.83
1653 1752 1.602668 CCCAAACAGACGGTGCATTTG 60.603 52.381 0.00 0.00 0.00 2.32
1654 1753 0.673437 CCCAAACAGACGGTGCATTT 59.327 50.000 0.00 0.00 0.00 2.32
1655 1754 0.467290 ACCCAAACAGACGGTGCATT 60.467 50.000 0.00 0.00 0.00 3.56
1656 1755 0.889186 GACCCAAACAGACGGTGCAT 60.889 55.000 0.00 0.00 0.00 3.96
1657 1756 1.525077 GACCCAAACAGACGGTGCA 60.525 57.895 0.00 0.00 0.00 4.57
1658 1757 2.604174 CGACCCAAACAGACGGTGC 61.604 63.158 0.00 0.00 0.00 5.01
1659 1758 1.959226 CCGACCCAAACAGACGGTG 60.959 63.158 0.00 0.00 38.97 4.94
1660 1759 2.424302 CCGACCCAAACAGACGGT 59.576 61.111 0.00 0.00 38.97 4.83
1661 1760 3.047877 GCCGACCCAAACAGACGG 61.048 66.667 0.00 0.00 45.26 4.79
1662 1761 3.047877 GGCCGACCCAAACAGACG 61.048 66.667 0.00 0.00 0.00 4.18
1672 1771 2.281276 AACTTCAACGGGCCGACC 60.281 61.111 35.78 0.00 0.00 4.79
1673 1772 2.943653 CAACTTCAACGGGCCGAC 59.056 61.111 35.78 0.00 0.00 4.79
1674 1773 2.975799 GCAACTTCAACGGGCCGA 60.976 61.111 35.78 7.50 0.00 5.54
1675 1774 2.966309 GAGCAACTTCAACGGGCCG 61.966 63.158 27.06 27.06 0.00 6.13
1676 1775 0.321298 TAGAGCAACTTCAACGGGCC 60.321 55.000 0.00 0.00 0.00 5.80
1677 1776 1.464997 CTTAGAGCAACTTCAACGGGC 59.535 52.381 0.00 0.00 0.00 6.13
1678 1777 2.480419 CACTTAGAGCAACTTCAACGGG 59.520 50.000 0.00 0.00 0.00 5.28
1679 1778 3.184581 GTCACTTAGAGCAACTTCAACGG 59.815 47.826 0.00 0.00 0.00 4.44
1680 1779 3.184581 GGTCACTTAGAGCAACTTCAACG 59.815 47.826 0.00 0.00 44.14 4.10
1681 1780 3.184581 CGGTCACTTAGAGCAACTTCAAC 59.815 47.826 0.00 0.00 44.97 3.18
1682 1781 3.390135 CGGTCACTTAGAGCAACTTCAA 58.610 45.455 0.00 0.00 44.97 2.69
1683 1782 2.288825 CCGGTCACTTAGAGCAACTTCA 60.289 50.000 0.00 0.00 44.97 3.02
1684 1783 2.029290 TCCGGTCACTTAGAGCAACTTC 60.029 50.000 0.00 0.00 44.97 3.01
1685 1784 1.968493 TCCGGTCACTTAGAGCAACTT 59.032 47.619 0.00 0.00 44.97 2.66
1686 1785 1.272769 GTCCGGTCACTTAGAGCAACT 59.727 52.381 0.00 0.00 44.97 3.16
1687 1786 1.672145 GGTCCGGTCACTTAGAGCAAC 60.672 57.143 0.00 0.00 44.97 4.17
1688 1787 0.606604 GGTCCGGTCACTTAGAGCAA 59.393 55.000 0.00 0.00 44.97 3.91
1689 1788 1.592400 CGGTCCGGTCACTTAGAGCA 61.592 60.000 2.34 0.00 44.97 4.26
1690 1789 1.139095 CGGTCCGGTCACTTAGAGC 59.861 63.158 2.34 0.00 41.32 4.09
1691 1790 0.450983 GACGGTCCGGTCACTTAGAG 59.549 60.000 17.28 0.00 36.91 2.43
1692 1791 0.037303 AGACGGTCCGGTCACTTAGA 59.963 55.000 17.28 0.00 39.42 2.10
1693 1792 0.170561 CAGACGGTCCGGTCACTTAG 59.829 60.000 17.28 0.00 39.42 2.18
1694 1793 0.538057 ACAGACGGTCCGGTCACTTA 60.538 55.000 17.28 0.00 39.42 2.24
1695 1794 1.803366 GACAGACGGTCCGGTCACTT 61.803 60.000 17.28 0.00 40.83 3.16
1696 1795 2.203451 ACAGACGGTCCGGTCACT 60.203 61.111 17.28 6.48 39.42 3.41
1697 1796 2.257676 GACAGACGGTCCGGTCAC 59.742 66.667 17.28 4.17 40.83 3.67
1707 1806 3.179830 CTCTTAAATGTCCGGACAGACG 58.820 50.000 37.98 23.72 45.48 4.18
1708 1807 3.522553 CCTCTTAAATGTCCGGACAGAC 58.477 50.000 37.98 13.78 45.48 3.51
1709 1808 2.500098 CCCTCTTAAATGTCCGGACAGA 59.500 50.000 37.98 27.90 45.48 3.41
1710 1809 2.420129 CCCCTCTTAAATGTCCGGACAG 60.420 54.545 37.98 25.53 45.48 3.51
1711 1810 1.557832 CCCCTCTTAAATGTCCGGACA 59.442 52.381 37.79 37.79 46.44 4.02
1712 1811 1.134189 CCCCCTCTTAAATGTCCGGAC 60.134 57.143 28.17 28.17 0.00 4.79
1713 1812 1.209621 CCCCCTCTTAAATGTCCGGA 58.790 55.000 0.00 0.00 0.00 5.14
1714 1813 0.916809 ACCCCCTCTTAAATGTCCGG 59.083 55.000 0.00 0.00 0.00 5.14
1715 1814 2.752903 CAAACCCCCTCTTAAATGTCCG 59.247 50.000 0.00 0.00 0.00 4.79
1716 1815 3.096852 CCAAACCCCCTCTTAAATGTCC 58.903 50.000 0.00 0.00 0.00 4.02
1717 1816 3.096852 CCCAAACCCCCTCTTAAATGTC 58.903 50.000 0.00 0.00 0.00 3.06
1718 1817 2.225522 CCCCAAACCCCCTCTTAAATGT 60.226 50.000 0.00 0.00 0.00 2.71
1719 1818 2.225522 ACCCCAAACCCCCTCTTAAATG 60.226 50.000 0.00 0.00 0.00 2.32
1720 1819 2.086753 ACCCCAAACCCCCTCTTAAAT 58.913 47.619 0.00 0.00 0.00 1.40
1721 1820 1.148236 CACCCCAAACCCCCTCTTAAA 59.852 52.381 0.00 0.00 0.00 1.52
1722 1821 0.781278 CACCCCAAACCCCCTCTTAA 59.219 55.000 0.00 0.00 0.00 1.85
1723 1822 0.403750 ACACCCCAAACCCCCTCTTA 60.404 55.000 0.00 0.00 0.00 2.10
1724 1823 1.703597 ACACCCCAAACCCCCTCTT 60.704 57.895 0.00 0.00 0.00 2.85
1725 1824 2.037677 ACACCCCAAACCCCCTCT 60.038 61.111 0.00 0.00 0.00 3.69
1726 1825 2.439245 GACACCCCAAACCCCCTC 59.561 66.667 0.00 0.00 0.00 4.30
1727 1826 3.190391 GGACACCCCAAACCCCCT 61.190 66.667 0.00 0.00 34.14 4.79
1728 1827 4.671590 CGGACACCCCAAACCCCC 62.672 72.222 0.00 0.00 34.14 5.40
1729 1828 4.671590 CCGGACACCCCAAACCCC 62.672 72.222 0.00 0.00 34.14 4.95
1731 1830 4.280019 AGCCGGACACCCCAAACC 62.280 66.667 5.05 0.00 34.14 3.27
1732 1831 1.833787 TAGAGCCGGACACCCCAAAC 61.834 60.000 5.05 0.00 34.14 2.93
1733 1832 0.912487 ATAGAGCCGGACACCCCAAA 60.912 55.000 5.05 0.00 34.14 3.28
1734 1833 1.306654 ATAGAGCCGGACACCCCAA 60.307 57.895 5.05 0.00 34.14 4.12
1735 1834 2.063979 CATAGAGCCGGACACCCCA 61.064 63.158 5.05 0.00 34.14 4.96
1736 1835 2.822399 CATAGAGCCGGACACCCC 59.178 66.667 5.05 0.00 0.00 4.95
1737 1836 2.109181 GCATAGAGCCGGACACCC 59.891 66.667 5.05 0.00 37.23 4.61
1746 1845 2.432510 ACACACCCTAAGAGCATAGAGC 59.567 50.000 0.00 0.00 46.19 4.09
1747 1846 4.744795 AACACACCCTAAGAGCATAGAG 57.255 45.455 0.00 0.00 0.00 2.43
1748 1847 4.323485 CCAAACACACCCTAAGAGCATAGA 60.323 45.833 0.00 0.00 0.00 1.98
1749 1848 3.941483 CCAAACACACCCTAAGAGCATAG 59.059 47.826 0.00 0.00 0.00 2.23
1750 1849 3.329520 ACCAAACACACCCTAAGAGCATA 59.670 43.478 0.00 0.00 0.00 3.14
1751 1850 2.108250 ACCAAACACACCCTAAGAGCAT 59.892 45.455 0.00 0.00 0.00 3.79
1752 1851 1.493022 ACCAAACACACCCTAAGAGCA 59.507 47.619 0.00 0.00 0.00 4.26
1753 1852 2.271944 ACCAAACACACCCTAAGAGC 57.728 50.000 0.00 0.00 0.00 4.09
1754 1853 3.244422 TGCTACCAAACACACCCTAAGAG 60.244 47.826 0.00 0.00 0.00 2.85
1755 1854 2.706723 TGCTACCAAACACACCCTAAGA 59.293 45.455 0.00 0.00 0.00 2.10
1820 1919 2.467838 CATGGACTCAGCATGTCTACG 58.532 52.381 0.00 0.00 37.40 3.51
1889 1988 5.811796 TGTAGGCTACCAAACAAAGTCTA 57.188 39.130 21.34 0.00 0.00 2.59
1920 2019 7.669427 AGGAATTCAAAATTGTTCAGCATGTA 58.331 30.769 7.93 0.00 37.40 2.29
1960 2062 9.956797 GTTCATATTTTTCCGATTTTGTTCATG 57.043 29.630 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.