Multiple sequence alignment - TraesCS4B01G254400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G254400 chr4B 100.000 7383 0 0 1 7383 519788305 519795687 0.000000e+00 13634.0
1 TraesCS4B01G254400 chr4D 96.200 3263 83 11 3573 6814 423379038 423382280 0.000000e+00 5301.0
2 TraesCS4B01G254400 chr4D 89.288 1671 125 26 101 1735 423375179 423376831 0.000000e+00 2045.0
3 TraesCS4B01G254400 chr4D 94.729 1328 38 9 2230 3527 423377501 423378826 0.000000e+00 2036.0
4 TraesCS4B01G254400 chr4D 92.079 404 22 7 6982 7383 423382460 423382855 1.800000e-155 560.0
5 TraesCS4B01G254400 chr4D 82.875 327 26 10 1882 2197 423377196 423377503 4.390000e-67 267.0
6 TraesCS4B01G254400 chr4D 90.541 74 7 0 2480 2553 369261455 369261528 1.700000e-16 99.0
7 TraesCS4B01G254400 chr4A 96.632 2880 78 11 3590 6460 40881237 40878368 0.000000e+00 4763.0
8 TraesCS4B01G254400 chr4A 91.028 2441 106 23 1121 3487 40883828 40881427 0.000000e+00 3190.0
9 TraesCS4B01G254400 chr4A 87.681 552 26 14 6421 6945 40878366 40877830 8.190000e-169 604.0
10 TraesCS4B01G254400 chr4A 94.894 235 10 2 6982 7215 40877422 40877189 4.210000e-97 366.0
11 TraesCS4B01G254400 chr4A 94.815 135 5 1 7249 7383 40877191 40877059 7.510000e-50 209.0
12 TraesCS4B01G254400 chr5B 82.482 137 23 1 2455 2590 297682674 297682810 1.300000e-22 119.0
13 TraesCS4B01G254400 chr5B 80.851 141 24 2 2454 2593 134536617 134536479 2.820000e-19 108.0
14 TraesCS4B01G254400 chr5B 84.932 73 10 1 2455 2526 410373158 410373230 1.030000e-08 73.1
15 TraesCS4B01G254400 chr1D 81.429 140 25 1 2455 2593 155130800 155130661 6.050000e-21 113.0
16 TraesCS4B01G254400 chr3A 83.784 111 15 3 2477 2585 611709640 611709749 1.310000e-17 102.0
17 TraesCS4B01G254400 chr1A 90.141 71 6 1 2457 2527 35542127 35542196 2.840000e-14 91.6
18 TraesCS4B01G254400 chr3B 81.579 114 9 8 2452 2553 215610065 215610178 4.750000e-12 84.2
19 TraesCS4B01G254400 chr2D 84.146 82 11 2 2508 2588 593157638 593157718 2.210000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G254400 chr4B 519788305 519795687 7382 False 13634.0 13634 100.0000 1 7383 1 chr4B.!!$F1 7382
1 TraesCS4B01G254400 chr4D 423375179 423382855 7676 False 2041.8 5301 91.0342 101 7383 5 chr4D.!!$F2 7282
2 TraesCS4B01G254400 chr4A 40877059 40883828 6769 True 1826.4 4763 93.0100 1121 7383 5 chr4A.!!$R1 6262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 950 0.036765 TATGACACCCACAACGCTCC 60.037 55.000 0.00 0.00 0.00 4.70 F
1169 1181 0.242825 GCTTTCGGTAAGGGGTTTGC 59.757 55.000 0.00 0.00 34.26 3.68 F
2103 2387 0.321298 TTGCCCTAGTTTCGCCACTC 60.321 55.000 0.00 0.00 0.00 3.51 F
2285 2604 1.098050 GCGGCATCCAGATGAAGTTT 58.902 50.000 11.81 0.00 41.20 2.66 F
3464 3813 0.322648 TCTCTGCATGCCCGATATGG 59.677 55.000 16.68 0.33 37.55 2.74 F
3529 3878 1.092348 GGGCAGTTGTTACGGAATCC 58.908 55.000 0.00 0.00 0.00 3.01 F
3572 3921 1.283029 TGAATTTCTCTCTGGGGCCAG 59.717 52.381 4.39 0.63 44.86 4.85 F
3573 3922 1.283321 GAATTTCTCTCTGGGGCCAGT 59.717 52.381 4.39 0.00 43.96 4.00 F
3574 3923 1.376649 ATTTCTCTCTGGGGCCAGTT 58.623 50.000 4.39 0.00 43.96 3.16 F
4191 4711 2.223272 TGCTACTGATAAGTCGCTGACG 60.223 50.000 8.14 0.00 37.67 4.35 F
5749 6277 2.536365 ACATGGAGTTATACACACGCG 58.464 47.619 3.53 3.53 0.00 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2258 2577 0.176910 TCTGGATGCCGCGATAACAA 59.823 50.000 8.23 0.0 0.00 2.83 R
2297 2616 3.002791 TCCAACTCTTAGCAAAGCGATG 58.997 45.455 0.00 0.0 32.36 3.84 R
3464 3813 0.102300 GTTGCCCAATTATCGTGGCC 59.898 55.000 0.00 0.0 43.35 5.36 R
3552 3901 1.283029 CTGGCCCCAGAGAGAAATTCA 59.717 52.381 8.67 0.0 46.30 2.57 R
4977 5497 0.250727 TTAAGCCTGCCACAGACACC 60.251 55.000 0.00 0.0 32.44 4.16 R
5293 5816 1.826385 TGATCTCGTCTGCTGAGTCA 58.174 50.000 0.00 0.0 34.99 3.41 R
5550 6073 2.156917 TGCTGGCAGATTTCAACTGAG 58.843 47.619 20.86 0.0 37.54 3.35 R
5672 6198 4.629200 CACTGCTGCAACTTGGTTTTAAAA 59.371 37.500 3.02 0.0 0.00 1.52 R
5716 6242 9.998106 GTATAACTCCATGTTTATATCACACCT 57.002 33.333 0.00 0.0 39.89 4.00 R
6095 6627 0.603707 CTTGCTCTTGGGCTTCGACA 60.604 55.000 0.00 0.0 0.00 4.35 R
6703 7277 0.032952 GGACCGCCGCATGATTAGTA 59.967 55.000 0.00 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.146618 CGTTGGAACGTATCAGCTAGT 57.853 47.619 3.72 0.00 46.63 2.57
40 41 3.508762 CGTTGGAACGTATCAGCTAGTT 58.491 45.455 3.72 0.00 46.63 2.24
41 42 3.546670 CGTTGGAACGTATCAGCTAGTTC 59.453 47.826 3.72 0.00 46.63 3.01
45 46 2.873133 ACGTATCAGCTAGTTCCAGC 57.127 50.000 0.00 0.00 42.12 4.85
46 47 2.100197 ACGTATCAGCTAGTTCCAGCA 58.900 47.619 0.00 0.00 44.35 4.41
47 48 2.496070 ACGTATCAGCTAGTTCCAGCAA 59.504 45.455 0.00 0.00 44.35 3.91
48 49 3.056107 ACGTATCAGCTAGTTCCAGCAAA 60.056 43.478 0.00 0.00 44.35 3.68
49 50 3.932710 CGTATCAGCTAGTTCCAGCAAAA 59.067 43.478 0.00 0.00 44.35 2.44
50 51 4.391830 CGTATCAGCTAGTTCCAGCAAAAA 59.608 41.667 0.00 0.00 44.35 1.94
68 69 3.704800 AAAACTTAGCAGGGAGACTCC 57.295 47.619 13.60 13.60 35.23 3.85
79 80 2.977772 GGAGACTCCCAGTGATTCAG 57.022 55.000 10.74 0.00 0.00 3.02
80 81 2.183679 GGAGACTCCCAGTGATTCAGT 58.816 52.381 10.74 0.00 0.00 3.41
81 82 2.569404 GGAGACTCCCAGTGATTCAGTT 59.431 50.000 10.74 0.00 0.00 3.16
82 83 3.008485 GGAGACTCCCAGTGATTCAGTTT 59.992 47.826 10.74 0.00 0.00 2.66
83 84 4.505742 GGAGACTCCCAGTGATTCAGTTTT 60.506 45.833 10.74 0.00 0.00 2.43
84 85 4.392940 AGACTCCCAGTGATTCAGTTTTG 58.607 43.478 0.00 0.00 0.00 2.44
85 86 3.490348 ACTCCCAGTGATTCAGTTTTGG 58.510 45.455 0.00 0.00 0.00 3.28
86 87 3.138283 ACTCCCAGTGATTCAGTTTTGGA 59.862 43.478 0.00 6.18 0.00 3.53
87 88 4.144297 CTCCCAGTGATTCAGTTTTGGAA 58.856 43.478 0.00 0.00 0.00 3.53
88 89 4.541705 TCCCAGTGATTCAGTTTTGGAAA 58.458 39.130 0.00 0.00 0.00 3.13
89 90 4.959210 TCCCAGTGATTCAGTTTTGGAAAA 59.041 37.500 0.00 0.00 0.00 2.29
90 91 5.602145 TCCCAGTGATTCAGTTTTGGAAAAT 59.398 36.000 0.00 0.00 0.00 1.82
91 92 6.780031 TCCCAGTGATTCAGTTTTGGAAAATA 59.220 34.615 0.00 0.00 0.00 1.40
92 93 7.288852 TCCCAGTGATTCAGTTTTGGAAAATAA 59.711 33.333 0.00 0.00 0.00 1.40
93 94 7.930865 CCCAGTGATTCAGTTTTGGAAAATAAA 59.069 33.333 0.00 0.00 0.00 1.40
94 95 9.323985 CCAGTGATTCAGTTTTGGAAAATAAAA 57.676 29.630 0.00 0.00 0.00 1.52
120 121 8.798859 ATGCTAGTTCAGACAAAATAGAACAT 57.201 30.769 0.00 0.00 42.01 2.71
187 188 2.330440 ACACATCGCATGGCTGATTA 57.670 45.000 0.00 0.00 33.60 1.75
194 195 4.270245 TCGCATGGCTGATTACATCATA 57.730 40.909 0.00 0.00 38.85 2.15
234 235 2.351253 CGAAATGGTTGGTCGATTGCAA 60.351 45.455 0.00 0.00 36.92 4.08
237 238 0.665835 TGGTTGGTCGATTGCAACAC 59.334 50.000 0.00 0.00 0.00 3.32
267 268 1.282875 GGTTCCAGCACAAAGTCGC 59.717 57.895 0.00 0.00 0.00 5.19
268 269 1.282875 GTTCCAGCACAAAGTCGCC 59.717 57.895 0.00 0.00 0.00 5.54
290 291 3.121279 CGTAGTTGTTGTCCATCTTCACG 59.879 47.826 0.00 0.00 0.00 4.35
298 299 0.601057 TCCATCTTCACGACGCAGAA 59.399 50.000 0.00 0.00 0.00 3.02
304 305 2.742710 TTCACGACGCAGAACCCTCG 62.743 60.000 0.00 0.00 0.00 4.63
339 340 2.737503 CCAGCTTTTGGTTCCAGCT 58.262 52.632 0.00 0.00 45.02 4.24
342 343 2.158914 CCAGCTTTTGGTTCCAGCTTTT 60.159 45.455 2.07 0.00 41.24 2.27
343 344 2.867975 CAGCTTTTGGTTCCAGCTTTTG 59.132 45.455 2.07 0.00 41.24 2.44
352 353 1.659794 CCAGCTTTTGGTTGGTCGG 59.340 57.895 0.00 0.00 42.41 4.79
353 354 1.007387 CAGCTTTTGGTTGGTCGGC 60.007 57.895 0.00 0.00 0.00 5.54
354 355 1.152756 AGCTTTTGGTTGGTCGGCT 60.153 52.632 0.00 0.00 0.00 5.52
355 356 1.007387 GCTTTTGGTTGGTCGGCTG 60.007 57.895 0.00 0.00 0.00 4.85
356 357 1.007387 CTTTTGGTTGGTCGGCTGC 60.007 57.895 0.00 0.00 0.00 5.25
357 358 1.733402 CTTTTGGTTGGTCGGCTGCA 61.733 55.000 0.50 0.00 0.00 4.41
358 359 1.733402 TTTTGGTTGGTCGGCTGCAG 61.733 55.000 10.11 10.11 0.00 4.41
402 403 2.808906 ACCTTAGCAAACCATCCCTC 57.191 50.000 0.00 0.00 0.00 4.30
409 410 1.612199 GCAAACCATCCCTCACCGTTA 60.612 52.381 0.00 0.00 0.00 3.18
442 443 4.287186 AACACTAGGTTGTCGCCGTAGG 62.287 54.545 0.00 0.00 46.03 3.18
462 463 2.279120 GGAGCATCGCACCTCTCG 60.279 66.667 0.00 0.00 36.40 4.04
484 485 3.414700 CCGACAGTTGTGCTCCGC 61.415 66.667 0.00 0.00 0.00 5.54
486 487 2.661866 GACAGTTGTGCTCCGCGT 60.662 61.111 4.92 0.00 0.00 6.01
490 491 3.116531 GTTGTGCTCCGCGTACCC 61.117 66.667 4.92 0.00 0.00 3.69
531 532 2.828868 GTGGTCACCAGCTCACCA 59.171 61.111 0.00 0.15 37.89 4.17
543 544 0.946221 GCTCACCACACACCTCTTCG 60.946 60.000 0.00 0.00 0.00 3.79
545 546 1.068588 CTCACCACACACCTCTTCGAA 59.931 52.381 0.00 0.00 0.00 3.71
546 547 1.483004 TCACCACACACCTCTTCGAAA 59.517 47.619 0.00 0.00 0.00 3.46
587 594 0.831307 GCCATAGGGGAGAGAAACGT 59.169 55.000 0.00 0.00 40.01 3.99
588 595 1.473434 GCCATAGGGGAGAGAAACGTG 60.473 57.143 0.00 0.00 40.01 4.49
605 612 2.367512 GGAGGAGTGGCTGGGGAT 60.368 66.667 0.00 0.00 0.00 3.85
611 618 2.043652 GTGGCTGGGGATGCACAT 60.044 61.111 0.00 0.00 0.00 3.21
686 696 1.049289 GGGTGAGAGGATAAGGCCGT 61.049 60.000 0.00 0.00 0.00 5.68
687 697 0.105039 GGTGAGAGGATAAGGCCGTG 59.895 60.000 0.00 0.00 0.00 4.94
714 724 2.809446 CCACACGATCTGCTTCGATTA 58.191 47.619 10.47 0.00 41.62 1.75
718 728 4.091365 CACACGATCTGCTTCGATTAAACA 59.909 41.667 10.47 0.00 41.62 2.83
726 736 3.496884 TGCTTCGATTAAACAAAGAGCGT 59.503 39.130 0.00 0.00 0.00 5.07
733 743 2.101209 AAACAAAGAGCGTGCGACCG 62.101 55.000 0.00 0.00 0.00 4.79
742 752 4.796231 GTGCGACCGACCGAGCAT 62.796 66.667 9.39 0.00 41.88 3.79
745 755 2.582498 CGACCGACCGAGCATTCC 60.582 66.667 0.00 0.00 0.00 3.01
746 756 2.577059 GACCGACCGAGCATTCCA 59.423 61.111 0.00 0.00 0.00 3.53
750 760 1.811266 CGACCGAGCATTCCACCAG 60.811 63.158 0.00 0.00 0.00 4.00
757 767 2.357836 CATTCCACCAGCCAGCCT 59.642 61.111 0.00 0.00 0.00 4.58
786 796 9.303502 AGGGATCATTTGCCTAAAAGCTAATGC 62.304 40.741 13.42 3.84 45.88 3.56
790 800 5.404466 TTTGCCTAAAAGCTAATGCACAT 57.596 34.783 0.00 0.00 42.74 3.21
792 802 6.522625 TTGCCTAAAAGCTAATGCACATAA 57.477 33.333 0.00 0.00 42.74 1.90
795 805 6.811170 TGCCTAAAAGCTAATGCACATAAAAC 59.189 34.615 0.00 0.00 42.74 2.43
798 808 7.915397 CCTAAAAGCTAATGCACATAAAACGAT 59.085 33.333 0.00 0.00 42.74 3.73
827 837 3.461843 GCGGACTGCACTCAAAAAG 57.538 52.632 0.00 0.00 45.45 2.27
828 838 0.661483 GCGGACTGCACTCAAAAAGC 60.661 55.000 0.00 0.00 45.45 3.51
829 839 0.947244 CGGACTGCACTCAAAAAGCT 59.053 50.000 0.00 0.00 0.00 3.74
830 840 2.143122 CGGACTGCACTCAAAAAGCTA 58.857 47.619 0.00 0.00 0.00 3.32
831 841 2.096218 CGGACTGCACTCAAAAAGCTAC 60.096 50.000 0.00 0.00 0.00 3.58
836 846 5.719173 ACTGCACTCAAAAAGCTACAAAAA 58.281 33.333 0.00 0.00 0.00 1.94
854 865 0.730265 AAAAAGCGTGTGACGAGCAA 59.270 45.000 0.00 0.00 46.05 3.91
864 875 1.374252 GACGAGCAATCACACGGGT 60.374 57.895 0.00 0.00 0.00 5.28
938 949 2.024176 ATATGACACCCACAACGCTC 57.976 50.000 0.00 0.00 0.00 5.03
939 950 0.036765 TATGACACCCACAACGCTCC 60.037 55.000 0.00 0.00 0.00 4.70
941 952 3.802418 GACACCCACAACGCTCCGT 62.802 63.158 0.00 0.00 43.97 4.69
961 972 7.908601 GCTCCGTTGGAAAATACTTATTACAAG 59.091 37.037 0.00 0.00 0.00 3.16
977 988 1.247567 CAAGTGGGCTTGTGTAAGGG 58.752 55.000 0.00 0.00 45.18 3.95
981 992 2.362503 GGCTTGTGTAAGGGCCCC 60.363 66.667 21.43 3.22 38.77 5.80
1000 1011 1.327303 CTGCCACTTGTTTGCCCTTA 58.673 50.000 0.00 0.00 0.00 2.69
1002 1013 1.617850 TGCCACTTGTTTGCCCTTATG 59.382 47.619 0.00 0.00 0.00 1.90
1008 1019 1.175347 TGTTTGCCCTTATGCGCACA 61.175 50.000 14.90 0.00 33.97 4.57
1073 1085 0.667487 CATGACGGCGAGACACACTT 60.667 55.000 16.62 0.00 0.00 3.16
1115 1127 2.680352 AGGCTTCCTCTTCGGCGA 60.680 61.111 4.99 4.99 0.00 5.54
1169 1181 0.242825 GCTTTCGGTAAGGGGTTTGC 59.757 55.000 0.00 0.00 34.26 3.68
1175 1187 2.167662 CGGTAAGGGGTTTGCTTTCAT 58.832 47.619 0.00 0.00 0.00 2.57
1179 1191 0.471591 AGGGGTTTGCTTTCATGCCA 60.472 50.000 0.00 0.00 0.00 4.92
1350 1382 4.510167 AGATCTGGACCAAAACCCTATG 57.490 45.455 0.00 0.00 0.00 2.23
1456 1491 2.034221 GGACCGCTTTCCTTGCCT 59.966 61.111 0.00 0.00 32.24 4.75
1542 1597 3.850098 CTCACCCCTGCTTTGCCGT 62.850 63.158 0.00 0.00 0.00 5.68
1547 1602 2.359850 CCTGCTTTGCCGTAGCCA 60.360 61.111 0.00 0.00 37.85 4.75
1615 1670 1.684983 GGATGTGGGGAGCATTGATTG 59.315 52.381 0.00 0.00 0.00 2.67
1641 1696 6.040278 GGACTGTAGTAGGAGGGTATTAACAC 59.960 46.154 0.00 0.00 0.00 3.32
1650 1705 2.647802 AGGGTATTAACACCAGGTTGCT 59.352 45.455 5.06 0.00 40.73 3.91
1651 1706 3.847780 AGGGTATTAACACCAGGTTGCTA 59.152 43.478 5.06 0.00 40.73 3.49
1652 1707 4.290196 AGGGTATTAACACCAGGTTGCTAA 59.710 41.667 5.06 0.00 40.73 3.09
1653 1708 5.011586 GGGTATTAACACCAGGTTGCTAAA 58.988 41.667 5.06 0.00 40.73 1.85
1754 1809 3.568007 TCCCACCTCGTGAAATTCTTTTG 59.432 43.478 0.00 0.00 35.23 2.44
1757 1812 4.275936 CCACCTCGTGAAATTCTTTTGTCT 59.724 41.667 0.00 0.00 35.23 3.41
1764 1819 1.545841 AATTCTTTTGTCTCCCGGCC 58.454 50.000 0.00 0.00 0.00 6.13
1765 1820 0.323451 ATTCTTTTGTCTCCCGGCCC 60.323 55.000 0.00 0.00 0.00 5.80
1766 1821 1.423794 TTCTTTTGTCTCCCGGCCCT 61.424 55.000 0.00 0.00 0.00 5.19
1767 1822 1.074951 CTTTTGTCTCCCGGCCCTT 59.925 57.895 0.00 0.00 0.00 3.95
1768 1823 0.960861 CTTTTGTCTCCCGGCCCTTC 60.961 60.000 0.00 0.00 0.00 3.46
1797 1852 2.606519 CCACTCTCCCGTCCCCAA 60.607 66.667 0.00 0.00 0.00 4.12
1799 1854 1.758592 CACTCTCCCGTCCCCAAAA 59.241 57.895 0.00 0.00 0.00 2.44
1893 2166 2.346365 GGGTTCCTCGGCTTTCGT 59.654 61.111 0.00 0.00 40.32 3.85
2050 2334 7.419204 TGAGGTGATTTCGTTTATTTTTCGTT 58.581 30.769 0.00 0.00 0.00 3.85
2078 2362 2.907407 GGGCGAATTAGGGCTGCC 60.907 66.667 11.05 11.05 44.98 4.85
2089 2373 4.007644 GGCTGCCCTGTTTTGCCC 62.008 66.667 7.66 0.00 37.81 5.36
2090 2374 2.919328 GCTGCCCTGTTTTGCCCT 60.919 61.111 0.00 0.00 0.00 5.19
2091 2375 1.606313 GCTGCCCTGTTTTGCCCTA 60.606 57.895 0.00 0.00 0.00 3.53
2092 2376 1.598701 GCTGCCCTGTTTTGCCCTAG 61.599 60.000 0.00 0.00 0.00 3.02
2097 2381 1.539827 CCCTGTTTTGCCCTAGTTTCG 59.460 52.381 0.00 0.00 0.00 3.46
2103 2387 0.321298 TTGCCCTAGTTTCGCCACTC 60.321 55.000 0.00 0.00 0.00 3.51
2156 2440 5.475220 TGTTTGGGTGTCCATGTACAAATAG 59.525 40.000 0.00 0.00 43.63 1.73
2180 2464 5.737349 GCCTATTTCTTTTGCCCTAGAATGC 60.737 44.000 0.00 0.00 31.00 3.56
2197 2516 4.041321 AGAATGCAGCAGGCTTGATAGATA 59.959 41.667 0.00 0.00 45.15 1.98
2198 2517 3.117491 TGCAGCAGGCTTGATAGATAC 57.883 47.619 0.00 0.00 45.15 2.24
2199 2518 2.702478 TGCAGCAGGCTTGATAGATACT 59.298 45.455 0.00 0.00 45.15 2.12
2200 2519 3.065655 GCAGCAGGCTTGATAGATACTG 58.934 50.000 0.00 0.00 40.25 2.74
2201 2520 3.494048 GCAGCAGGCTTGATAGATACTGT 60.494 47.826 0.00 0.00 40.25 3.55
2202 2521 4.262207 GCAGCAGGCTTGATAGATACTGTA 60.262 45.833 0.00 0.00 40.25 2.74
2203 2522 5.468592 CAGCAGGCTTGATAGATACTGTAG 58.531 45.833 0.00 0.00 0.00 2.74
2204 2523 5.010516 CAGCAGGCTTGATAGATACTGTAGT 59.989 44.000 0.00 0.00 0.00 2.73
2205 2524 5.010516 AGCAGGCTTGATAGATACTGTAGTG 59.989 44.000 0.00 0.00 0.00 2.74
2206 2525 5.010112 GCAGGCTTGATAGATACTGTAGTGA 59.990 44.000 0.00 0.00 0.00 3.41
2207 2526 6.295011 GCAGGCTTGATAGATACTGTAGTGAT 60.295 42.308 0.00 0.00 0.00 3.06
2208 2527 7.665690 CAGGCTTGATAGATACTGTAGTGATT 58.334 38.462 0.00 0.00 0.00 2.57
2209 2528 8.797438 CAGGCTTGATAGATACTGTAGTGATTA 58.203 37.037 0.00 0.00 0.00 1.75
2210 2529 9.540538 AGGCTTGATAGATACTGTAGTGATTAT 57.459 33.333 0.00 0.00 0.00 1.28
2219 2538 9.373450 AGATACTGTAGTGATTATTCATCTGGT 57.627 33.333 0.00 0.00 33.56 4.00
2220 2539 9.632807 GATACTGTAGTGATTATTCATCTGGTC 57.367 37.037 0.00 0.00 33.56 4.02
2221 2540 7.667575 ACTGTAGTGATTATTCATCTGGTCT 57.332 36.000 0.00 0.00 33.56 3.85
2222 2541 8.768501 ACTGTAGTGATTATTCATCTGGTCTA 57.231 34.615 0.00 0.00 33.56 2.59
2223 2542 8.855110 ACTGTAGTGATTATTCATCTGGTCTAG 58.145 37.037 0.00 0.00 33.56 2.43
2224 2543 7.661968 TGTAGTGATTATTCATCTGGTCTAGC 58.338 38.462 0.00 0.00 33.56 3.42
2225 2544 5.777802 AGTGATTATTCATCTGGTCTAGCG 58.222 41.667 0.00 0.00 33.56 4.26
2226 2545 5.536538 AGTGATTATTCATCTGGTCTAGCGA 59.463 40.000 0.00 0.00 33.56 4.93
2227 2546 5.861251 GTGATTATTCATCTGGTCTAGCGAG 59.139 44.000 0.00 0.00 33.56 5.03
2228 2547 5.536538 TGATTATTCATCTGGTCTAGCGAGT 59.463 40.000 0.00 0.00 32.34 4.18
2229 2548 3.724508 ATTCATCTGGTCTAGCGAGTG 57.275 47.619 0.00 0.00 0.00 3.51
2230 2549 2.420058 TCATCTGGTCTAGCGAGTGA 57.580 50.000 0.00 0.00 0.00 3.41
2231 2550 2.937519 TCATCTGGTCTAGCGAGTGAT 58.062 47.619 0.00 0.00 0.00 3.06
2285 2604 1.098050 GCGGCATCCAGATGAAGTTT 58.902 50.000 11.81 0.00 41.20 2.66
2297 2616 7.666623 TCCAGATGAAGTTTAATTTTTGGTCC 58.333 34.615 0.00 0.00 0.00 4.46
2300 2619 9.143631 CAGATGAAGTTTAATTTTTGGTCCATC 57.856 33.333 0.00 0.00 0.00 3.51
2317 2636 2.096496 CCATCGCTTTGCTAAGAGTTGG 59.904 50.000 20.62 20.62 41.48 3.77
2417 2744 4.117685 CAACCTACCTTATTGCTACGGTC 58.882 47.826 0.00 0.00 32.17 4.79
2453 2780 8.211198 ACTGTTTTTATTGATCGTTTTTAGCG 57.789 30.769 0.00 0.00 0.00 4.26
2579 2928 2.363306 CACAATTATGGGCTAGGGCA 57.637 50.000 0.00 0.00 40.87 5.36
2625 2974 6.074142 GCACTTCATTTTGTTTGAGAATGGAC 60.074 38.462 0.00 0.00 32.91 4.02
2831 3180 7.148918 GCATGTTTAGTTCACTATTTTGTGCAG 60.149 37.037 0.00 0.00 37.81 4.41
2969 3318 4.676924 GCAATTTCTGTTCCTCTTGTTTCG 59.323 41.667 0.00 0.00 0.00 3.46
3096 3445 8.494347 CAAAGAAGTAATCTGTCTCTGTCTTTG 58.506 37.037 7.64 7.64 41.46 2.77
3100 3449 2.533266 TCTGTCTCTGTCTTTGGTGC 57.467 50.000 0.00 0.00 0.00 5.01
3369 3718 1.863454 GATTTCGCATGCATCGTCTCT 59.137 47.619 19.57 0.00 0.00 3.10
3464 3813 0.322648 TCTCTGCATGCCCGATATGG 59.677 55.000 16.68 0.33 37.55 2.74
3492 3841 6.910433 CACGATAATTGGGCAACAGTATTAAC 59.090 38.462 0.00 0.00 39.74 2.01
3493 3842 6.600032 ACGATAATTGGGCAACAGTATTAACA 59.400 34.615 0.00 0.00 39.74 2.41
3527 3876 1.202830 TGTGGGCAGTTGTTACGGAAT 60.203 47.619 0.00 0.00 0.00 3.01
3528 3877 1.467342 GTGGGCAGTTGTTACGGAATC 59.533 52.381 0.00 0.00 0.00 2.52
3529 3878 1.092348 GGGCAGTTGTTACGGAATCC 58.908 55.000 0.00 0.00 0.00 3.01
3530 3879 1.092348 GGCAGTTGTTACGGAATCCC 58.908 55.000 0.00 0.00 0.00 3.85
3531 3880 1.612199 GGCAGTTGTTACGGAATCCCA 60.612 52.381 0.00 0.00 0.00 4.37
3532 3881 2.365582 GCAGTTGTTACGGAATCCCAT 58.634 47.619 0.00 0.00 0.00 4.00
3533 3882 2.354821 GCAGTTGTTACGGAATCCCATC 59.645 50.000 0.00 0.00 0.00 3.51
3534 3883 3.873910 CAGTTGTTACGGAATCCCATCT 58.126 45.455 0.00 0.00 0.00 2.90
3535 3884 4.682320 GCAGTTGTTACGGAATCCCATCTA 60.682 45.833 0.00 0.00 0.00 1.98
3536 3885 5.050490 CAGTTGTTACGGAATCCCATCTAG 58.950 45.833 0.00 0.00 0.00 2.43
3537 3886 4.960469 AGTTGTTACGGAATCCCATCTAGA 59.040 41.667 0.00 0.00 0.00 2.43
3538 3887 5.069251 AGTTGTTACGGAATCCCATCTAGAG 59.931 44.000 0.00 0.00 0.00 2.43
3539 3888 4.800023 TGTTACGGAATCCCATCTAGAGA 58.200 43.478 0.00 0.00 0.00 3.10
3540 3889 5.394738 TGTTACGGAATCCCATCTAGAGAT 58.605 41.667 0.00 0.00 34.56 2.75
3566 3915 3.010200 CCCCCTTGAATTTCTCTCTGG 57.990 52.381 0.00 0.00 0.00 3.86
3567 3916 2.357569 CCCCCTTGAATTTCTCTCTGGG 60.358 54.545 0.00 0.00 0.00 4.45
3568 3917 2.357569 CCCCTTGAATTTCTCTCTGGGG 60.358 54.545 13.25 13.25 40.07 4.96
3569 3918 2.373224 CCTTGAATTTCTCTCTGGGGC 58.627 52.381 0.00 0.00 0.00 5.80
3570 3919 2.373224 CTTGAATTTCTCTCTGGGGCC 58.627 52.381 0.00 0.00 0.00 5.80
3571 3920 1.371467 TGAATTTCTCTCTGGGGCCA 58.629 50.000 4.39 0.00 0.00 5.36
3572 3921 1.283029 TGAATTTCTCTCTGGGGCCAG 59.717 52.381 4.39 0.63 44.86 4.85
3573 3922 1.283321 GAATTTCTCTCTGGGGCCAGT 59.717 52.381 4.39 0.00 43.96 4.00
3574 3923 1.376649 ATTTCTCTCTGGGGCCAGTT 58.623 50.000 4.39 0.00 43.96 3.16
3836 4356 4.936891 AGTTGGCACATTCTTTTGTCTTC 58.063 39.130 0.00 0.00 39.30 2.87
4191 4711 2.223272 TGCTACTGATAAGTCGCTGACG 60.223 50.000 8.14 0.00 37.67 4.35
4715 5235 7.389803 TCACCAACAACAATAATGACTATGG 57.610 36.000 0.00 0.00 0.00 2.74
4977 5497 5.066375 TCCATTTGATCCTACAATTGCTTCG 59.934 40.000 5.05 0.00 32.97 3.79
5293 5816 8.577048 AGAACTCATCATTCAGTGATTTTGAT 57.423 30.769 0.00 0.91 45.25 2.57
5544 6067 6.883756 TGTCTCATTTTGTGCCAGTTATGATA 59.116 34.615 0.00 0.00 0.00 2.15
5550 6073 8.810427 CATTTTGTGCCAGTTATGATATGTTTC 58.190 33.333 0.00 0.00 0.00 2.78
5715 6241 6.675486 GCAGTGCACTCGATTTTGTTGTATAT 60.675 38.462 18.64 0.00 0.00 0.86
5716 6242 7.465379 GCAGTGCACTCGATTTTGTTGTATATA 60.465 37.037 18.64 0.00 0.00 0.86
5747 6275 9.471084 TGATATAAACATGGAGTTATACACACG 57.529 33.333 0.00 0.00 40.26 4.49
5749 6277 2.536365 ACATGGAGTTATACACACGCG 58.464 47.619 3.53 3.53 0.00 6.01
5819 6348 5.353956 TGTTGAACCCGTATTGATGAATGAG 59.646 40.000 0.00 0.00 0.00 2.90
5823 6352 6.042666 TGAACCCGTATTGATGAATGAGGATA 59.957 38.462 2.87 0.00 0.00 2.59
5848 6377 4.855715 TCGTAGCCAGGAATAGAATCTG 57.144 45.455 0.00 0.00 0.00 2.90
5861 6390 6.887002 GGAATAGAATCTGGAAAACCTGAACT 59.113 38.462 0.00 0.00 0.00 3.01
5864 6393 8.712228 ATAGAATCTGGAAAACCTGAACTTTT 57.288 30.769 0.00 0.00 0.00 2.27
5865 6394 7.043961 AGAATCTGGAAAACCTGAACTTTTC 57.956 36.000 0.00 0.00 37.04 2.29
5868 6397 5.130350 TCTGGAAAACCTGAACTTTTCGAT 58.870 37.500 0.00 0.00 38.15 3.59
5881 6410 7.199766 TGAACTTTTCGATGTTTGCTTAATGT 58.800 30.769 0.00 0.00 0.00 2.71
5891 6421 7.328249 CGATGTTTGCTTAATGTATTTGTGGTT 59.672 33.333 0.00 0.00 0.00 3.67
5892 6422 9.632807 GATGTTTGCTTAATGTATTTGTGGTTA 57.367 29.630 0.00 0.00 0.00 2.85
5893 6423 9.988815 ATGTTTGCTTAATGTATTTGTGGTTAA 57.011 25.926 0.00 0.00 0.00 2.01
5924 6454 5.927281 ATCATCCTTCCCAAAATGAAGTG 57.073 39.130 0.00 0.00 38.00 3.16
5947 6479 4.683129 GCATTCTTGGTTTTGTTTCCCTGT 60.683 41.667 0.00 0.00 0.00 4.00
6095 6627 2.665185 GTCGTCCAACGGCAAGCT 60.665 61.111 0.00 0.00 46.84 3.74
6126 6658 4.335647 AGCAAGCCGGTGGTGGAG 62.336 66.667 1.90 0.00 0.00 3.86
6169 6701 0.809385 CAAGATCAAGCAGCAGGTGG 59.191 55.000 0.86 0.00 0.00 4.61
6228 6760 1.226156 CGACGAAGCGACAGAGGAG 60.226 63.158 0.00 0.00 0.00 3.69
6279 6811 1.687494 GACGCTGATGGCTCGTGTTC 61.687 60.000 0.00 0.00 39.13 3.18
6296 6829 3.193267 GTGTTCTAATTTCATGCTGCCCA 59.807 43.478 0.00 0.00 0.00 5.36
6388 6921 3.887621 AGTATGTGTCGTGGTTATGCT 57.112 42.857 0.00 0.00 0.00 3.79
6444 6977 3.384789 TGTGTAGTCTGAAGTCTGCTGTT 59.615 43.478 0.00 0.00 0.00 3.16
6447 6980 5.050490 TGTAGTCTGAAGTCTGCTGTTTTC 58.950 41.667 0.00 0.00 0.00 2.29
6448 6981 4.414337 AGTCTGAAGTCTGCTGTTTTCT 57.586 40.909 9.70 0.00 0.00 2.52
6545 7119 7.033791 TCATTGTAGTTAAGTCTCGGTTGATC 58.966 38.462 0.00 0.00 0.00 2.92
6670 7244 2.899976 TCATTGTGCCGTCGATTGTAT 58.100 42.857 0.00 0.00 0.00 2.29
6677 7251 2.132762 GCCGTCGATTGTATTACTGGG 58.867 52.381 0.00 0.00 0.00 4.45
6683 7257 3.449377 TCGATTGTATTACTGGGTGCTGA 59.551 43.478 0.00 0.00 0.00 4.26
6684 7258 4.100963 TCGATTGTATTACTGGGTGCTGAT 59.899 41.667 0.00 0.00 0.00 2.90
6702 7276 7.806960 GGTGCTGATAAACGGTATTAGTAGTAG 59.193 40.741 0.00 0.00 0.00 2.57
6703 7277 8.348507 GTGCTGATAAACGGTATTAGTAGTAGT 58.651 37.037 0.00 0.00 0.00 2.73
6704 7278 9.559732 TGCTGATAAACGGTATTAGTAGTAGTA 57.440 33.333 0.00 0.00 0.00 1.82
6747 7321 7.095607 CCGTATATAGAATCTTTGTCCAGTTGC 60.096 40.741 0.00 0.00 0.00 4.17
6852 7447 2.783135 CAAATGTGCCAGTAGGACTGT 58.217 47.619 5.92 0.00 44.50 3.55
6853 7448 3.868369 GCAAATGTGCCAGTAGGACTGTA 60.868 47.826 0.00 0.00 44.50 2.74
6854 7449 3.611766 AATGTGCCAGTAGGACTGTAC 57.388 47.619 5.92 5.39 44.50 2.90
6911 7511 1.662686 AAGAGAAAGGGAGGAGGGTG 58.337 55.000 0.00 0.00 0.00 4.61
6914 7514 2.941583 AAAGGGAGGAGGGTGCCC 60.942 66.667 0.00 0.00 42.37 5.36
6949 7549 3.719268 TGGCACATCCAAATCTGTACT 57.281 42.857 0.00 0.00 43.21 2.73
6950 7550 4.835284 TGGCACATCCAAATCTGTACTA 57.165 40.909 0.00 0.00 43.21 1.82
6951 7551 5.172687 TGGCACATCCAAATCTGTACTAA 57.827 39.130 0.00 0.00 43.21 2.24
6952 7552 5.754782 TGGCACATCCAAATCTGTACTAAT 58.245 37.500 0.00 0.00 43.21 1.73
6953 7553 6.894682 TGGCACATCCAAATCTGTACTAATA 58.105 36.000 0.00 0.00 43.21 0.98
6954 7554 7.517320 TGGCACATCCAAATCTGTACTAATAT 58.483 34.615 0.00 0.00 43.21 1.28
6955 7555 7.998383 TGGCACATCCAAATCTGTACTAATATT 59.002 33.333 0.00 0.00 43.21 1.28
6956 7556 9.502091 GGCACATCCAAATCTGTACTAATATTA 57.498 33.333 0.00 0.00 34.01 0.98
6980 7960 7.762588 ACTGTAGTACACTGATCAAAGTAGT 57.237 36.000 15.14 15.14 0.00 2.73
6987 7967 9.165035 AGTACACTGATCAAAGTAGTAGTAGTC 57.835 37.037 11.06 0.00 0.00 2.59
7031 8011 2.304180 CTCTGATTGACTCCCAGGTTGT 59.696 50.000 0.00 0.00 0.00 3.32
7059 8039 2.040412 CCTTTGAGCCCTTCTACAACCT 59.960 50.000 0.00 0.00 0.00 3.50
7107 8088 0.744414 ATCATGTGCGCGCCTAAAGT 60.744 50.000 30.77 8.04 0.00 2.66
7154 8135 3.005684 CAGGCATGACCACTTTTAGCAAA 59.994 43.478 0.00 0.00 43.14 3.68
7155 8136 3.834231 AGGCATGACCACTTTTAGCAAAT 59.166 39.130 0.00 0.00 43.14 2.32
7156 8137 4.284234 AGGCATGACCACTTTTAGCAAATT 59.716 37.500 0.00 0.00 43.14 1.82
7288 8273 2.846693 CGTGTACGATCGCTGCATATA 58.153 47.619 16.60 0.00 43.02 0.86
7289 8274 3.426323 CGTGTACGATCGCTGCATATAT 58.574 45.455 16.60 0.00 43.02 0.86
7347 8332 0.468771 ACTTGGCTCCTGCTTGCTTT 60.469 50.000 0.00 0.00 39.59 3.51
7358 8343 3.490419 CCTGCTTGCTTTCTAATCATGCC 60.490 47.826 0.00 0.00 32.14 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.117046 GCTGGAACTAGCTGATACGTTC 58.883 50.000 0.00 1.53 40.52 3.95
25 26 2.496070 TGCTGGAACTAGCTGATACGTT 59.504 45.455 11.06 0.00 44.01 3.99
26 27 2.100197 TGCTGGAACTAGCTGATACGT 58.900 47.619 11.06 0.00 44.01 3.57
27 28 2.871182 TGCTGGAACTAGCTGATACG 57.129 50.000 11.06 0.00 44.01 3.06
28 29 5.880054 TTTTTGCTGGAACTAGCTGATAC 57.120 39.130 11.06 0.00 44.01 2.24
47 48 4.022413 GGAGTCTCCCTGCTAAGTTTTT 57.978 45.455 7.78 0.00 0.00 1.94
48 49 3.704800 GGAGTCTCCCTGCTAAGTTTT 57.295 47.619 7.78 0.00 0.00 2.43
60 61 2.183679 ACTGAATCACTGGGAGTCTCC 58.816 52.381 10.78 10.78 41.13 3.71
61 62 3.971245 AACTGAATCACTGGGAGTCTC 57.029 47.619 8.95 0.00 41.13 3.36
62 63 4.392940 CAAAACTGAATCACTGGGAGTCT 58.607 43.478 8.95 0.00 41.13 3.24
63 64 3.503748 CCAAAACTGAATCACTGGGAGTC 59.496 47.826 0.00 0.00 40.94 3.36
64 65 3.138283 TCCAAAACTGAATCACTGGGAGT 59.862 43.478 0.00 0.00 0.00 3.85
65 66 3.754965 TCCAAAACTGAATCACTGGGAG 58.245 45.455 0.00 0.00 0.00 4.30
66 67 3.874383 TCCAAAACTGAATCACTGGGA 57.126 42.857 0.00 0.00 0.00 4.37
67 68 4.935352 TTTCCAAAACTGAATCACTGGG 57.065 40.909 0.00 0.00 0.00 4.45
68 69 8.885494 TTTATTTTCCAAAACTGAATCACTGG 57.115 30.769 0.00 0.00 0.00 4.00
82 83 9.691362 GTCTGAACTAGCATTTTTATTTTCCAA 57.309 29.630 0.00 0.00 0.00 3.53
83 84 8.855110 TGTCTGAACTAGCATTTTTATTTTCCA 58.145 29.630 0.00 0.00 0.00 3.53
84 85 9.691362 TTGTCTGAACTAGCATTTTTATTTTCC 57.309 29.630 0.00 0.00 0.00 3.13
92 93 9.899226 GTTCTATTTTGTCTGAACTAGCATTTT 57.101 29.630 0.00 0.00 36.73 1.82
93 94 9.066892 TGTTCTATTTTGTCTGAACTAGCATTT 57.933 29.630 0.00 0.00 39.38 2.32
94 95 8.621532 TGTTCTATTTTGTCTGAACTAGCATT 57.378 30.769 0.00 0.00 39.38 3.56
95 96 8.798859 ATGTTCTATTTTGTCTGAACTAGCAT 57.201 30.769 0.00 0.00 39.38 3.79
96 97 8.506437 CAATGTTCTATTTTGTCTGAACTAGCA 58.494 33.333 0.00 0.00 39.38 3.49
97 98 7.965107 CCAATGTTCTATTTTGTCTGAACTAGC 59.035 37.037 0.00 0.00 39.38 3.42
98 99 9.003658 ACCAATGTTCTATTTTGTCTGAACTAG 57.996 33.333 0.00 0.00 39.38 2.57
99 100 8.918202 ACCAATGTTCTATTTTGTCTGAACTA 57.082 30.769 0.00 0.00 39.38 2.24
115 116 4.027214 CGTTTTTCGTTGGAACCAATGTTC 60.027 41.667 20.59 4.32 41.99 3.18
131 132 0.922717 TCGTCACCGACACGTTTTTC 59.077 50.000 0.00 0.00 38.40 2.29
161 162 1.167851 CCATGCGATGTGTTGGAACT 58.832 50.000 0.00 0.00 0.00 3.01
187 188 4.318332 CAACCAGCATCGGTATATGATGT 58.682 43.478 15.34 4.55 44.02 3.06
212 213 1.199097 GCAATCGACCAACCATTTCGT 59.801 47.619 0.00 0.00 34.35 3.85
234 235 2.306847 GGAACCAACAACATCCTGTGT 58.693 47.619 0.00 0.00 44.84 3.72
237 238 1.270550 GCTGGAACCAACAACATCCTG 59.729 52.381 0.00 0.00 34.92 3.86
248 249 1.444119 GCGACTTTGTGCTGGAACCA 61.444 55.000 0.00 0.00 0.00 3.67
256 257 0.110823 CAACTACGGCGACTTTGTGC 60.111 55.000 16.62 0.00 0.00 4.57
267 268 3.432252 GTGAAGATGGACAACAACTACGG 59.568 47.826 0.00 0.00 31.22 4.02
268 269 3.121279 CGTGAAGATGGACAACAACTACG 59.879 47.826 0.00 0.00 31.22 3.51
304 305 3.202706 GAATCGGCAACCCTCGGC 61.203 66.667 0.00 0.00 0.00 5.54
335 336 1.007387 GCCGACCAACCAAAAGCTG 60.007 57.895 0.00 0.00 0.00 4.24
336 337 1.152756 AGCCGACCAACCAAAAGCT 60.153 52.632 0.00 0.00 0.00 3.74
337 338 1.007387 CAGCCGACCAACCAAAAGC 60.007 57.895 0.00 0.00 0.00 3.51
338 339 1.007387 GCAGCCGACCAACCAAAAG 60.007 57.895 0.00 0.00 0.00 2.27
339 340 1.733402 CTGCAGCCGACCAACCAAAA 61.733 55.000 0.00 0.00 0.00 2.44
342 343 2.616797 TTTCTGCAGCCGACCAACCA 62.617 55.000 9.47 0.00 0.00 3.67
343 344 1.452145 TTTTCTGCAGCCGACCAACC 61.452 55.000 9.47 0.00 0.00 3.77
344 345 0.383949 TTTTTCTGCAGCCGACCAAC 59.616 50.000 9.47 0.00 0.00 3.77
345 346 2.800516 TTTTTCTGCAGCCGACCAA 58.199 47.368 9.47 0.00 0.00 3.67
346 347 4.569279 TTTTTCTGCAGCCGACCA 57.431 50.000 9.47 0.00 0.00 4.02
402 403 0.461870 TGCAGGCTGCTATAACGGTG 60.462 55.000 36.50 0.00 45.31 4.94
409 410 1.134280 CCTAGTGTTGCAGGCTGCTAT 60.134 52.381 36.50 19.05 45.31 2.97
442 443 2.512515 GAGGTGCGATGCTCCCAC 60.513 66.667 6.29 0.00 42.42 4.61
484 485 1.080974 ACGAAGTTGCGAGGGTACG 60.081 57.895 0.00 0.00 37.78 3.67
486 487 0.319211 CACACGAAGTTGCGAGGGTA 60.319 55.000 0.00 0.00 41.61 3.69
490 491 1.083401 GCACACACGAAGTTGCGAG 60.083 57.895 0.00 0.00 41.61 5.03
495 496 2.203294 GGGGGCACACACGAAGTT 60.203 61.111 0.00 0.00 41.61 2.66
522 523 0.107456 AAGAGGTGTGTGGTGAGCTG 59.893 55.000 0.00 0.00 0.00 4.24
543 544 3.181456 ACCTCCATATCAGCAGCTCTTTC 60.181 47.826 0.00 0.00 0.00 2.62
545 546 2.406559 ACCTCCATATCAGCAGCTCTT 58.593 47.619 0.00 0.00 0.00 2.85
546 547 2.100128 ACCTCCATATCAGCAGCTCT 57.900 50.000 0.00 0.00 0.00 4.09
558 565 0.178861 CCCCTATGGCCTACCTCCAT 60.179 60.000 3.32 0.00 45.60 3.41
572 579 1.618888 CCTCCACGTTTCTCTCCCCTA 60.619 57.143 0.00 0.00 0.00 3.53
587 594 3.273071 ATCCCCAGCCACTCCTCCA 62.273 63.158 0.00 0.00 0.00 3.86
588 595 2.367512 ATCCCCAGCCACTCCTCC 60.368 66.667 0.00 0.00 0.00 4.30
605 612 0.839277 CCTCATACCCCTCATGTGCA 59.161 55.000 0.00 0.00 0.00 4.57
637 646 2.176045 TCTTGTCTCCTCACGCCAATA 58.824 47.619 0.00 0.00 0.00 1.90
686 696 2.438254 GATCGTGTGGCCCATGCA 60.438 61.111 0.00 0.00 40.13 3.96
687 697 2.124570 AGATCGTGTGGCCCATGC 60.125 61.111 0.00 0.00 0.00 4.06
714 724 1.647084 GGTCGCACGCTCTTTGTTT 59.353 52.632 0.00 0.00 0.00 2.83
718 728 2.733593 GTCGGTCGCACGCTCTTT 60.734 61.111 0.00 0.00 0.00 2.52
726 736 3.982372 GAATGCTCGGTCGGTCGCA 62.982 63.158 0.00 0.00 36.75 5.10
733 743 2.109126 GCTGGTGGAATGCTCGGTC 61.109 63.158 0.00 0.00 0.00 4.79
741 751 0.704076 TTAAGGCTGGCTGGTGGAAT 59.296 50.000 3.84 0.00 0.00 3.01
742 752 0.038166 CTTAAGGCTGGCTGGTGGAA 59.962 55.000 3.84 0.00 0.00 3.53
745 755 1.379044 CCCTTAAGGCTGGCTGGTG 60.379 63.158 16.70 0.00 0.00 4.17
746 756 0.921256 ATCCCTTAAGGCTGGCTGGT 60.921 55.000 16.70 0.00 34.51 4.00
750 760 2.363359 CAAATGATCCCTTAAGGCTGGC 59.637 50.000 16.70 5.57 34.51 4.85
757 767 5.957774 AGCTTTTAGGCAAATGATCCCTTAA 59.042 36.000 0.00 0.00 34.17 1.85
780 790 9.481800 CATATGCTATCGTTTTATGTGCATTAG 57.518 33.333 0.00 0.00 39.79 1.73
810 820 0.947244 AGCTTTTTGAGTGCAGTCCG 59.053 50.000 18.82 3.73 0.00 4.79
836 846 0.944386 ATTGCTCGTCACACGCTTTT 59.056 45.000 0.00 0.00 42.21 2.27
840 850 1.130613 GTGATTGCTCGTCACACGC 59.869 57.895 10.45 0.00 44.13 5.34
848 859 3.027170 GCACCCGTGTGATTGCTCG 62.027 63.158 0.90 0.00 45.76 5.03
877 888 1.120530 CTACTACCATGGGGAAGCGT 58.879 55.000 18.09 5.94 38.05 5.07
883 894 8.437575 ACTTAATAAATGACTACTACCATGGGG 58.562 37.037 18.09 11.03 41.29 4.96
911 922 5.525745 CGTTGTGGGTGTCATATTTATAGCA 59.474 40.000 0.00 0.00 0.00 3.49
938 949 7.966204 CCACTTGTAATAAGTATTTTCCAACGG 59.034 37.037 0.00 0.00 0.00 4.44
939 950 7.966204 CCCACTTGTAATAAGTATTTTCCAACG 59.034 37.037 0.00 0.00 0.00 4.10
941 952 7.672239 AGCCCACTTGTAATAAGTATTTTCCAA 59.328 33.333 0.00 0.00 0.00 3.53
961 972 1.977009 GGCCCTTACACAAGCCCAC 60.977 63.158 0.00 0.00 39.60 4.61
977 988 2.736531 CAAACAAGTGGCAGGGGC 59.263 61.111 0.00 0.00 40.13 5.80
981 992 1.327303 TAAGGGCAAACAAGTGGCAG 58.673 50.000 0.00 0.00 45.56 4.85
1031 1042 3.862845 GTGATCTTTTTCCTCTCTCGAGC 59.137 47.826 7.81 0.00 35.90 5.03
1073 1085 3.188873 CGGCTTACCCACGACATTAAAAA 59.811 43.478 0.00 0.00 0.00 1.94
1154 1166 1.143277 TGAAAGCAAACCCCTTACCGA 59.857 47.619 0.00 0.00 0.00 4.69
1615 1670 3.899612 ATACCCTCCTACTACAGTCCC 57.100 52.381 0.00 0.00 0.00 4.46
1641 1696 4.615912 CGGTGAATTTCTTTAGCAACCTGG 60.616 45.833 0.00 0.00 0.00 4.45
1650 1705 5.239963 GGGTTCAAGTCGGTGAATTTCTTTA 59.760 40.000 0.00 0.00 39.61 1.85
1651 1706 4.037565 GGGTTCAAGTCGGTGAATTTCTTT 59.962 41.667 0.00 0.00 39.61 2.52
1652 1707 3.568430 GGGTTCAAGTCGGTGAATTTCTT 59.432 43.478 0.00 0.00 39.61 2.52
1653 1708 3.146847 GGGTTCAAGTCGGTGAATTTCT 58.853 45.455 0.00 0.00 39.61 2.52
1780 1835 1.774894 TTTTGGGGACGGGAGAGTGG 61.775 60.000 0.00 0.00 0.00 4.00
1784 1839 2.109304 AGAAAATTTTGGGGACGGGAGA 59.891 45.455 8.47 0.00 0.00 3.71
1789 1844 2.165641 GCCCTAGAAAATTTTGGGGACG 59.834 50.000 25.27 9.59 38.34 4.79
1790 1845 3.441101 AGCCCTAGAAAATTTTGGGGAC 58.559 45.455 25.27 18.91 38.34 4.46
1797 1852 6.153942 AGGACCTAAAGCCCTAGAAAATTT 57.846 37.500 0.00 0.00 0.00 1.82
1799 1854 5.340110 GGAAGGACCTAAAGCCCTAGAAAAT 60.340 44.000 0.00 0.00 35.41 1.82
1841 1896 3.702048 CGAAGGAACCCCGAGGCA 61.702 66.667 0.00 0.00 37.58 4.75
2078 2362 1.068541 GCGAAACTAGGGCAAAACAGG 60.069 52.381 0.00 0.00 0.00 4.00
2089 2373 3.371285 GCCTAAAAGAGTGGCGAAACTAG 59.629 47.826 0.00 0.00 37.11 2.57
2090 2374 3.332034 GCCTAAAAGAGTGGCGAAACTA 58.668 45.455 0.00 0.00 37.11 2.24
2091 2375 2.152016 GCCTAAAAGAGTGGCGAAACT 58.848 47.619 0.00 0.00 37.11 2.66
2092 2376 2.613730 GCCTAAAAGAGTGGCGAAAC 57.386 50.000 0.00 0.00 37.11 2.78
2097 2381 2.747446 TGAAATCGCCTAAAAGAGTGGC 59.253 45.455 0.00 0.00 42.94 5.01
2103 2387 9.226345 GAAATTACATCTGAAATCGCCTAAAAG 57.774 33.333 0.00 0.00 0.00 2.27
2156 2440 5.737349 GCATTCTAGGGCAAAAGAAATAGGC 60.737 44.000 0.00 0.00 35.47 3.93
2180 2464 4.333913 ACAGTATCTATCAAGCCTGCTG 57.666 45.455 0.00 0.00 0.00 4.41
2197 2516 7.667575 AGACCAGATGAATAATCACTACAGT 57.332 36.000 0.00 0.00 38.69 3.55
2198 2517 7.812191 GCTAGACCAGATGAATAATCACTACAG 59.188 40.741 0.00 0.00 38.69 2.74
2199 2518 7.522236 CGCTAGACCAGATGAATAATCACTACA 60.522 40.741 0.00 0.00 38.69 2.74
2200 2519 6.804295 CGCTAGACCAGATGAATAATCACTAC 59.196 42.308 0.00 0.00 38.69 2.73
2201 2520 6.715264 TCGCTAGACCAGATGAATAATCACTA 59.285 38.462 0.00 0.00 38.69 2.74
2202 2521 5.536538 TCGCTAGACCAGATGAATAATCACT 59.463 40.000 0.00 0.00 38.69 3.41
2203 2522 5.773575 TCGCTAGACCAGATGAATAATCAC 58.226 41.667 0.00 0.00 38.69 3.06
2204 2523 5.536538 ACTCGCTAGACCAGATGAATAATCA 59.463 40.000 0.00 0.00 40.57 2.57
2205 2524 5.861251 CACTCGCTAGACCAGATGAATAATC 59.139 44.000 0.00 0.00 35.29 1.75
2206 2525 5.536538 TCACTCGCTAGACCAGATGAATAAT 59.463 40.000 0.00 0.00 0.00 1.28
2207 2526 4.887655 TCACTCGCTAGACCAGATGAATAA 59.112 41.667 0.00 0.00 0.00 1.40
2208 2527 4.461198 TCACTCGCTAGACCAGATGAATA 58.539 43.478 0.00 0.00 0.00 1.75
2209 2528 3.291584 TCACTCGCTAGACCAGATGAAT 58.708 45.455 0.00 0.00 0.00 2.57
2210 2529 2.723273 TCACTCGCTAGACCAGATGAA 58.277 47.619 0.00 0.00 0.00 2.57
2211 2530 2.420058 TCACTCGCTAGACCAGATGA 57.580 50.000 0.00 0.00 0.00 2.92
2212 2531 3.724508 AATCACTCGCTAGACCAGATG 57.275 47.619 0.00 0.00 0.00 2.90
2213 2532 4.437239 CAAAATCACTCGCTAGACCAGAT 58.563 43.478 0.00 0.00 0.00 2.90
2214 2533 3.368427 CCAAAATCACTCGCTAGACCAGA 60.368 47.826 0.00 0.00 0.00 3.86
2215 2534 2.932614 CCAAAATCACTCGCTAGACCAG 59.067 50.000 0.00 0.00 0.00 4.00
2216 2535 2.565391 TCCAAAATCACTCGCTAGACCA 59.435 45.455 0.00 0.00 0.00 4.02
2217 2536 3.247006 TCCAAAATCACTCGCTAGACC 57.753 47.619 0.00 0.00 0.00 3.85
2218 2537 4.870426 TGAATCCAAAATCACTCGCTAGAC 59.130 41.667 0.00 0.00 0.00 2.59
2219 2538 5.084818 TGAATCCAAAATCACTCGCTAGA 57.915 39.130 0.00 0.00 0.00 2.43
2220 2539 4.872691 ACTGAATCCAAAATCACTCGCTAG 59.127 41.667 0.00 0.00 0.00 3.42
2221 2540 4.832248 ACTGAATCCAAAATCACTCGCTA 58.168 39.130 0.00 0.00 0.00 4.26
2222 2541 3.679389 ACTGAATCCAAAATCACTCGCT 58.321 40.909 0.00 0.00 0.00 4.93
2223 2542 3.686726 AGACTGAATCCAAAATCACTCGC 59.313 43.478 0.00 0.00 0.00 5.03
2224 2543 5.869753 AAGACTGAATCCAAAATCACTCG 57.130 39.130 0.00 0.00 0.00 4.18
2225 2544 7.173907 TCTGAAAGACTGAATCCAAAATCACTC 59.826 37.037 0.00 0.00 38.67 3.51
2226 2545 7.000472 TCTGAAAGACTGAATCCAAAATCACT 59.000 34.615 0.00 0.00 38.67 3.41
2227 2546 7.206981 TCTGAAAGACTGAATCCAAAATCAC 57.793 36.000 0.00 0.00 38.67 3.06
2258 2577 0.176910 TCTGGATGCCGCGATAACAA 59.823 50.000 8.23 0.00 0.00 2.83
2285 2604 4.021544 AGCAAAGCGATGGACCAAAAATTA 60.022 37.500 0.00 0.00 0.00 1.40
2297 2616 3.002791 TCCAACTCTTAGCAAAGCGATG 58.997 45.455 0.00 0.00 32.36 3.84
2300 2619 3.896648 TTTCCAACTCTTAGCAAAGCG 57.103 42.857 0.00 0.00 32.36 4.68
2555 2904 3.256631 CCCTAGCCCATAATTGTGCATTC 59.743 47.826 0.00 0.00 0.00 2.67
2668 3017 4.380531 CCTTGCAACGGATCTACACATAT 58.619 43.478 8.72 0.00 0.00 1.78
2916 3265 9.911788 ATCAGTAGTTTGATCTTTCATTACCAT 57.088 29.630 0.00 0.00 32.42 3.55
2969 3318 6.183360 GCCTAATAAAAAGGAGGTGATCACAC 60.183 42.308 26.47 18.54 40.06 3.82
3464 3813 0.102300 GTTGCCCAATTATCGTGGCC 59.898 55.000 0.00 0.00 43.35 5.36
3509 3858 1.612199 GGATTCCGTAACAACTGCCCA 60.612 52.381 0.00 0.00 0.00 5.36
3546 3895 2.357569 CCCAGAGAGAAATTCAAGGGGG 60.358 54.545 0.00 0.00 32.69 5.40
3547 3896 2.357569 CCCCAGAGAGAAATTCAAGGGG 60.358 54.545 11.04 11.04 43.03 4.79
3548 3897 2.947695 GCCCCAGAGAGAAATTCAAGGG 60.948 54.545 0.00 0.00 34.79 3.95
3549 3898 2.373224 GCCCCAGAGAGAAATTCAAGG 58.627 52.381 0.00 0.00 0.00 3.61
3550 3899 2.291153 TGGCCCCAGAGAGAAATTCAAG 60.291 50.000 0.00 0.00 0.00 3.02
3551 3900 1.710244 TGGCCCCAGAGAGAAATTCAA 59.290 47.619 0.00 0.00 0.00 2.69
3552 3901 1.283029 CTGGCCCCAGAGAGAAATTCA 59.717 52.381 8.67 0.00 46.30 2.57
3553 3902 1.283321 ACTGGCCCCAGAGAGAAATTC 59.717 52.381 20.59 0.00 46.30 2.17
3554 3903 1.376649 ACTGGCCCCAGAGAGAAATT 58.623 50.000 20.59 0.00 46.30 1.82
3555 3904 1.376649 AACTGGCCCCAGAGAGAAAT 58.623 50.000 20.59 0.00 46.30 2.17
3556 3905 2.038863 TAACTGGCCCCAGAGAGAAA 57.961 50.000 20.59 0.00 46.30 2.52
3557 3906 2.270434 ATAACTGGCCCCAGAGAGAA 57.730 50.000 20.59 2.07 46.30 2.87
3558 3907 3.637821 ATATAACTGGCCCCAGAGAGA 57.362 47.619 20.59 5.79 46.30 3.10
3559 3908 4.160329 TGTATATAACTGGCCCCAGAGAG 58.840 47.826 20.59 0.00 46.30 3.20
3560 3909 4.207698 TGTATATAACTGGCCCCAGAGA 57.792 45.455 20.59 8.15 46.30 3.10
3561 3910 4.974645 TTGTATATAACTGGCCCCAGAG 57.025 45.455 20.59 0.00 46.30 3.35
3562 3911 4.020573 CGATTGTATATAACTGGCCCCAGA 60.021 45.833 20.59 0.00 46.30 3.86
3564 3913 3.904965 TCGATTGTATATAACTGGCCCCA 59.095 43.478 0.00 0.00 0.00 4.96
3565 3914 4.546829 TCGATTGTATATAACTGGCCCC 57.453 45.455 0.00 0.00 0.00 5.80
3566 3915 5.354234 CCATTCGATTGTATATAACTGGCCC 59.646 44.000 0.00 0.00 0.00 5.80
3567 3916 5.163754 GCCATTCGATTGTATATAACTGGCC 60.164 44.000 0.00 0.00 39.55 5.36
3568 3917 5.411361 TGCCATTCGATTGTATATAACTGGC 59.589 40.000 6.56 0.00 44.35 4.85
3569 3918 6.128282 GGTGCCATTCGATTGTATATAACTGG 60.128 42.308 6.56 0.00 0.00 4.00
3570 3919 6.426633 TGGTGCCATTCGATTGTATATAACTG 59.573 38.462 6.56 0.00 0.00 3.16
3571 3920 6.426937 GTGGTGCCATTCGATTGTATATAACT 59.573 38.462 6.56 0.00 0.00 2.24
3572 3921 6.599437 GTGGTGCCATTCGATTGTATATAAC 58.401 40.000 6.56 0.00 0.00 1.89
3573 3922 5.407084 CGTGGTGCCATTCGATTGTATATAA 59.593 40.000 6.56 0.00 0.00 0.98
3574 3923 4.926832 CGTGGTGCCATTCGATTGTATATA 59.073 41.667 6.56 0.00 0.00 0.86
3836 4356 6.764308 TTTTCAGGCATCCTTTTCTATGAG 57.236 37.500 0.00 0.00 0.00 2.90
4146 4666 1.472480 GCAAGCAAACGGTGACCATAT 59.528 47.619 1.11 0.00 0.00 1.78
4191 4711 2.231235 CCCAGTTACCACATTCCAAAGC 59.769 50.000 0.00 0.00 0.00 3.51
4715 5235 6.128172 TGCTTTTAGCTTCTCATACTTGCTTC 60.128 38.462 0.00 0.00 42.97 3.86
4977 5497 0.250727 TTAAGCCTGCCACAGACACC 60.251 55.000 0.00 0.00 32.44 4.16
5293 5816 1.826385 TGATCTCGTCTGCTGAGTCA 58.174 50.000 0.00 0.00 34.99 3.41
5544 6067 4.828939 TGGCAGATTTCAACTGAGAAACAT 59.171 37.500 0.00 0.00 40.03 2.71
5550 6073 2.156917 TGCTGGCAGATTTCAACTGAG 58.843 47.619 20.86 0.00 37.54 3.35
5672 6198 4.629200 CACTGCTGCAACTTGGTTTTAAAA 59.371 37.500 3.02 0.00 0.00 1.52
5716 6242 9.998106 GTATAACTCCATGTTTATATCACACCT 57.002 33.333 0.00 0.00 39.89 4.00
5725 6251 5.233476 CGCGTGTGTATAACTCCATGTTTAT 59.767 40.000 0.00 0.00 39.89 1.40
5819 6348 7.584122 TCTATTCCTGGCTACGATTATATCC 57.416 40.000 0.00 0.00 0.00 2.59
5823 6352 7.364232 CCAGATTCTATTCCTGGCTACGATTAT 60.364 40.741 0.00 0.00 40.69 1.28
5848 6377 5.183014 ACATCGAAAAGTTCAGGTTTTCC 57.817 39.130 0.00 0.00 39.68 3.13
5861 6390 9.469807 ACAAATACATTAAGCAAACATCGAAAA 57.530 25.926 0.00 0.00 0.00 2.29
5864 6393 7.026562 CCACAAATACATTAAGCAAACATCGA 58.973 34.615 0.00 0.00 0.00 3.59
5865 6394 6.806249 ACCACAAATACATTAAGCAAACATCG 59.194 34.615 0.00 0.00 0.00 3.84
5868 6397 9.988815 ATTAACCACAAATACATTAAGCAAACA 57.011 25.926 0.00 0.00 0.00 2.83
5891 6421 9.983024 TTTTGGGAAGGATGATAACAGTTATTA 57.017 29.630 7.26 3.80 0.00 0.98
5892 6422 8.893563 TTTTGGGAAGGATGATAACAGTTATT 57.106 30.769 7.26 0.00 0.00 1.40
5893 6423 8.917088 CATTTTGGGAAGGATGATAACAGTTAT 58.083 33.333 5.43 5.43 0.00 1.89
5924 6454 3.809279 CAGGGAAACAAAACCAAGAATGC 59.191 43.478 0.00 0.00 0.00 3.56
5947 6479 3.005684 GCCATGGAATTGTCAACAACTGA 59.994 43.478 18.40 0.00 38.86 3.41
6095 6627 0.603707 CTTGCTCTTGGGCTTCGACA 60.604 55.000 0.00 0.00 0.00 4.35
6169 6701 1.886542 GTTCCCATTGACAGGTTCCAC 59.113 52.381 0.00 0.00 0.00 4.02
6207 6739 1.859564 CTCTGTCGCTTCGTCGTCG 60.860 63.158 0.00 0.00 38.55 5.12
6222 6754 2.303175 GCTTACATCTCGTCCTCCTCT 58.697 52.381 0.00 0.00 0.00 3.69
6228 6760 1.929836 CTGCTTGCTTACATCTCGTCC 59.070 52.381 0.00 0.00 0.00 4.79
6279 6811 2.360165 GGTCTGGGCAGCATGAAATTAG 59.640 50.000 0.00 0.00 39.69 1.73
6388 6921 5.411053 TGCAAACGATGTTTATCATGTCTCA 59.589 36.000 0.00 0.00 36.83 3.27
6444 6977 6.772605 TCTTCACCTCAAGATCAATGAGAAA 58.227 36.000 23.00 15.08 45.74 2.52
6447 6980 6.128063 GGTTTCTTCACCTCAAGATCAATGAG 60.128 42.308 17.28 17.28 43.15 2.90
6448 6981 5.707298 GGTTTCTTCACCTCAAGATCAATGA 59.293 40.000 0.00 0.00 32.32 2.57
6545 7119 1.449601 ATGGGCGCAACCTAACGAG 60.450 57.895 10.83 0.00 39.10 4.18
6670 7244 2.303600 ACCGTTTATCAGCACCCAGTAA 59.696 45.455 0.00 0.00 0.00 2.24
6677 7251 8.348507 ACTACTACTAATACCGTTTATCAGCAC 58.651 37.037 0.00 0.00 0.00 4.40
6702 7276 1.137513 GACCGCCGCATGATTAGTAC 58.862 55.000 0.00 0.00 0.00 2.73
6703 7277 0.032952 GGACCGCCGCATGATTAGTA 59.967 55.000 0.00 0.00 0.00 1.82
6704 7278 1.227556 GGACCGCCGCATGATTAGT 60.228 57.895 0.00 0.00 0.00 2.24
6747 7321 8.184848 AGATAATACGACTTGATGATATGACCG 58.815 37.037 0.00 0.00 0.00 4.79
6821 7416 2.460757 GCACATTTGCCACTTTCCAT 57.539 45.000 0.00 0.00 43.66 3.41
6852 7447 9.866936 CACGCTTTACTAATTTGTTTTGTAGTA 57.133 29.630 0.00 0.00 29.32 1.82
6853 7448 8.614346 TCACGCTTTACTAATTTGTTTTGTAGT 58.386 29.630 0.00 0.00 29.32 2.73
6854 7449 8.996988 TCACGCTTTACTAATTTGTTTTGTAG 57.003 30.769 0.00 0.00 29.32 2.74
6881 7476 9.467796 CTCCTCCCTTTCTCTTTTATGTTTATT 57.532 33.333 0.00 0.00 0.00 1.40
6887 7482 4.228438 ACCCTCCTCCCTTTCTCTTTTATG 59.772 45.833 0.00 0.00 0.00 1.90
6889 7484 3.587506 CACCCTCCTCCCTTTCTCTTTTA 59.412 47.826 0.00 0.00 0.00 1.52
6893 7490 0.912006 GCACCCTCCTCCCTTTCTCT 60.912 60.000 0.00 0.00 0.00 3.10
6894 7491 1.604915 GCACCCTCCTCCCTTTCTC 59.395 63.158 0.00 0.00 0.00 2.87
6895 7492 1.925972 GGCACCCTCCTCCCTTTCT 60.926 63.158 0.00 0.00 0.00 2.52
6896 7493 2.677848 GGCACCCTCCTCCCTTTC 59.322 66.667 0.00 0.00 0.00 2.62
6911 7511 2.288640 GCCAATTATTCATCAGCTGGGC 60.289 50.000 15.13 10.66 0.00 5.36
6914 7514 4.642445 TGTGCCAATTATTCATCAGCTG 57.358 40.909 7.63 7.63 0.00 4.24
6954 7554 9.293404 ACTACTTTGATCAGTGTACTACAGTAA 57.707 33.333 0.00 0.00 29.11 2.24
6955 7555 8.859236 ACTACTTTGATCAGTGTACTACAGTA 57.141 34.615 0.00 0.00 29.11 2.74
6956 7556 7.762588 ACTACTTTGATCAGTGTACTACAGT 57.237 36.000 0.00 0.00 30.48 3.55
6957 7557 8.948145 ACTACTACTTTGATCAGTGTACTACAG 58.052 37.037 0.00 0.00 0.00 2.74
6961 7561 9.165035 GACTACTACTACTTTGATCAGTGTACT 57.835 37.037 0.00 0.00 0.00 2.73
6962 7562 8.397148 GGACTACTACTACTTTGATCAGTGTAC 58.603 40.741 0.00 0.00 0.00 2.90
6963 7563 8.327271 AGGACTACTACTACTTTGATCAGTGTA 58.673 37.037 0.00 2.85 0.00 2.90
7000 7980 7.405292 TGGGAGTCAATCAGAGTTTCAAATAT 58.595 34.615 0.00 0.00 0.00 1.28
7007 7987 2.982488 ACCTGGGAGTCAATCAGAGTTT 59.018 45.455 0.00 0.00 0.00 2.66
7059 8039 2.263540 GTCTACGGCCCGCTTTCA 59.736 61.111 1.23 0.00 0.00 2.69
7121 8102 5.599656 AGTGGTCATGCCTGCATTATTAAAT 59.400 36.000 0.97 0.00 38.35 1.40
7288 8273 5.982890 AACAATCCACCGAAGAAATGAAT 57.017 34.783 0.00 0.00 0.00 2.57
7289 8274 5.300539 TGAAACAATCCACCGAAGAAATGAA 59.699 36.000 0.00 0.00 0.00 2.57
7358 8343 2.363711 TACATAAGCCGGCGCCAGAG 62.364 60.000 28.98 15.75 34.57 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.