Multiple sequence alignment - TraesCS4B01G254200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G254200 chr4B 100.000 3551 0 0 1 3551 519498407 519494857 0.000000e+00 6558
1 TraesCS4B01G254200 chr4A 94.503 2747 87 23 846 3551 41035906 41033183 0.000000e+00 4178
2 TraesCS4B01G254200 chr4D 93.900 2410 112 20 440 2820 422939865 422937462 0.000000e+00 3603
3 TraesCS4B01G254200 chr4D 90.980 765 39 15 2816 3551 422937303 422936540 0.000000e+00 1003
4 TraesCS4B01G254200 chr1B 93.096 449 28 2 1 447 473235778 473236225 0.000000e+00 654
5 TraesCS4B01G254200 chr2A 91.910 445 34 1 1 443 111919010 111919454 3.890000e-174 621
6 TraesCS4B01G254200 chr2A 90.562 445 39 2 1 443 468321076 468321519 1.420000e-163 586
7 TraesCS4B01G254200 chr2A 86.860 449 53 3 1 443 46101361 46100913 6.850000e-137 497
8 TraesCS4B01G254200 chr6D 91.685 445 35 1 1 443 20785438 20784994 1.810000e-172 616
9 TraesCS4B01G254200 chr7D 91.011 445 38 1 1 443 408468998 408469442 1.820000e-167 599
10 TraesCS4B01G254200 chr5A 89.910 446 39 5 1 443 624933346 624932904 1.430000e-158 569
11 TraesCS4B01G254200 chr1A 86.966 445 55 2 1 443 491309655 491310098 6.850000e-137 497
12 TraesCS4B01G254200 chr3A 86.577 447 56 2 1 443 711282799 711283245 1.150000e-134 490


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G254200 chr4B 519494857 519498407 3550 True 6558 6558 100.000 1 3551 1 chr4B.!!$R1 3550
1 TraesCS4B01G254200 chr4A 41033183 41035906 2723 True 4178 4178 94.503 846 3551 1 chr4A.!!$R1 2705
2 TraesCS4B01G254200 chr4D 422936540 422939865 3325 True 2303 3603 92.440 440 3551 2 chr4D.!!$R1 3111

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
629 631 0.027716 CAATGCAGATGTCTCGCAGC 59.972 55.0 0.0 0.0 39.39 5.25 F
686 695 0.238289 GACAAAGATGGTGTGCCGTG 59.762 55.0 0.0 0.0 37.67 4.94 F
1881 1912 0.331278 TGATTGGCGGATTGGGACTT 59.669 50.0 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2065 0.533755 CATTCGGCATCAGTCCCCTC 60.534 60.0 0.00 0.00 0.00 4.30 R
2232 2263 1.771565 ACCCGTTCTCGACCATATCA 58.228 50.0 0.00 0.00 39.71 2.15 R
3205 3430 0.326264 ACAGGTTCATGAGCACCTCC 59.674 55.0 15.01 4.15 41.86 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.525619 CCGAAATCGTGTTGAGGGA 57.474 52.632 1.79 0.00 37.74 4.20
19 20 2.024176 CCGAAATCGTGTTGAGGGAT 57.976 50.000 1.79 0.00 37.74 3.85
20 21 1.665679 CCGAAATCGTGTTGAGGGATG 59.334 52.381 1.79 0.00 37.74 3.51
21 22 1.665679 CGAAATCGTGTTGAGGGATGG 59.334 52.381 0.00 0.00 34.11 3.51
22 23 2.017049 GAAATCGTGTTGAGGGATGGG 58.983 52.381 0.00 0.00 0.00 4.00
23 24 0.991920 AATCGTGTTGAGGGATGGGT 59.008 50.000 0.00 0.00 0.00 4.51
24 25 0.541863 ATCGTGTTGAGGGATGGGTC 59.458 55.000 0.00 0.00 0.00 4.46
25 26 0.834261 TCGTGTTGAGGGATGGGTCA 60.834 55.000 0.00 0.00 0.00 4.02
26 27 0.391661 CGTGTTGAGGGATGGGTCAG 60.392 60.000 0.00 0.00 0.00 3.51
27 28 0.693049 GTGTTGAGGGATGGGTCAGT 59.307 55.000 0.00 0.00 0.00 3.41
28 29 1.073923 GTGTTGAGGGATGGGTCAGTT 59.926 52.381 0.00 0.00 0.00 3.16
29 30 2.304761 GTGTTGAGGGATGGGTCAGTTA 59.695 50.000 0.00 0.00 0.00 2.24
30 31 2.304761 TGTTGAGGGATGGGTCAGTTAC 59.695 50.000 0.00 0.00 0.00 2.50
31 32 1.191535 TGAGGGATGGGTCAGTTACG 58.808 55.000 0.00 0.00 0.00 3.18
32 33 0.464452 GAGGGATGGGTCAGTTACGG 59.536 60.000 0.00 0.00 0.00 4.02
33 34 0.252558 AGGGATGGGTCAGTTACGGT 60.253 55.000 0.00 0.00 0.00 4.83
34 35 1.007479 AGGGATGGGTCAGTTACGGTA 59.993 52.381 0.00 0.00 0.00 4.02
35 36 1.137675 GGGATGGGTCAGTTACGGTAC 59.862 57.143 0.00 0.00 0.00 3.34
36 37 2.105766 GGATGGGTCAGTTACGGTACT 58.894 52.381 0.00 0.00 0.00 2.73
37 38 2.159142 GGATGGGTCAGTTACGGTACTG 60.159 54.545 11.63 11.63 45.46 2.74
38 39 1.999648 TGGGTCAGTTACGGTACTGT 58.000 50.000 12.92 12.92 44.62 3.55
39 40 2.318908 TGGGTCAGTTACGGTACTGTT 58.681 47.619 13.66 0.00 44.62 3.16
40 41 2.036217 TGGGTCAGTTACGGTACTGTTG 59.964 50.000 13.66 5.64 44.62 3.33
41 42 2.611224 GGGTCAGTTACGGTACTGTTGG 60.611 54.545 13.66 0.76 44.62 3.77
42 43 2.064014 GTCAGTTACGGTACTGTTGGC 58.936 52.381 13.66 3.04 44.62 4.52
43 44 1.065358 CAGTTACGGTACTGTTGGCG 58.935 55.000 13.66 0.00 40.48 5.69
44 45 0.037975 AGTTACGGTACTGTTGGCGG 60.038 55.000 13.66 0.00 0.00 6.13
45 46 1.374505 TTACGGTACTGTTGGCGGC 60.375 57.895 13.66 0.00 0.00 6.53
46 47 1.818959 TTACGGTACTGTTGGCGGCT 61.819 55.000 13.66 0.00 0.00 5.52
47 48 1.818959 TACGGTACTGTTGGCGGCTT 61.819 55.000 13.66 0.00 0.00 4.35
48 49 1.079681 CGGTACTGTTGGCGGCTTA 60.080 57.895 11.43 0.00 0.00 3.09
49 50 0.461339 CGGTACTGTTGGCGGCTTAT 60.461 55.000 11.43 0.00 0.00 1.73
50 51 1.296727 GGTACTGTTGGCGGCTTATC 58.703 55.000 11.43 0.00 0.00 1.75
51 52 0.928229 GTACTGTTGGCGGCTTATCG 59.072 55.000 11.43 0.00 0.00 2.92
64 65 5.251999 CGGCTTATCGCTCTATGTTTAAC 57.748 43.478 0.00 0.00 39.13 2.01
65 66 4.982916 CGGCTTATCGCTCTATGTTTAACT 59.017 41.667 0.00 0.00 39.13 2.24
66 67 5.107837 CGGCTTATCGCTCTATGTTTAACTG 60.108 44.000 0.00 0.00 39.13 3.16
67 68 5.177696 GGCTTATCGCTCTATGTTTAACTGG 59.822 44.000 0.00 0.00 39.13 4.00
68 69 5.983720 GCTTATCGCTCTATGTTTAACTGGA 59.016 40.000 0.00 0.00 35.14 3.86
69 70 6.479001 GCTTATCGCTCTATGTTTAACTGGAA 59.521 38.462 0.00 0.00 35.14 3.53
70 71 7.171678 GCTTATCGCTCTATGTTTAACTGGAAT 59.828 37.037 0.00 0.00 35.14 3.01
71 72 6.851222 ATCGCTCTATGTTTAACTGGAATG 57.149 37.500 0.00 0.00 0.00 2.67
72 73 5.972935 TCGCTCTATGTTTAACTGGAATGA 58.027 37.500 0.00 0.00 0.00 2.57
73 74 5.810587 TCGCTCTATGTTTAACTGGAATGAC 59.189 40.000 0.00 0.00 0.00 3.06
74 75 5.276395 CGCTCTATGTTTAACTGGAATGACG 60.276 44.000 0.00 0.00 0.00 4.35
75 76 5.502544 GCTCTATGTTTAACTGGAATGACGC 60.503 44.000 0.00 0.00 0.00 5.19
76 77 5.730550 TCTATGTTTAACTGGAATGACGCT 58.269 37.500 0.00 0.00 0.00 5.07
77 78 6.170506 TCTATGTTTAACTGGAATGACGCTT 58.829 36.000 0.00 0.00 0.00 4.68
78 79 5.705609 ATGTTTAACTGGAATGACGCTTT 57.294 34.783 0.00 0.00 0.00 3.51
79 80 4.854399 TGTTTAACTGGAATGACGCTTTG 58.146 39.130 0.00 0.00 0.00 2.77
80 81 4.226761 GTTTAACTGGAATGACGCTTTGG 58.773 43.478 0.00 0.00 0.00 3.28
81 82 2.270352 AACTGGAATGACGCTTTGGA 57.730 45.000 0.00 0.00 0.00 3.53
82 83 1.813513 ACTGGAATGACGCTTTGGAG 58.186 50.000 0.00 0.00 0.00 3.86
83 84 1.089920 CTGGAATGACGCTTTGGAGG 58.910 55.000 0.00 0.00 0.00 4.30
84 85 0.960364 TGGAATGACGCTTTGGAGGC 60.960 55.000 0.00 0.00 0.00 4.70
91 92 4.132999 GCTTTGGAGGCGGAGATC 57.867 61.111 0.00 0.00 0.00 2.75
92 93 1.524849 GCTTTGGAGGCGGAGATCC 60.525 63.158 0.00 0.00 35.77 3.36
93 94 1.907739 CTTTGGAGGCGGAGATCCA 59.092 57.895 0.00 0.00 41.99 3.41
94 95 0.471617 CTTTGGAGGCGGAGATCCAT 59.528 55.000 0.00 0.00 42.93 3.41
95 96 0.181114 TTTGGAGGCGGAGATCCATG 59.819 55.000 0.00 0.00 42.93 3.66
96 97 2.031768 GGAGGCGGAGATCCATGC 59.968 66.667 0.00 0.00 35.37 4.06
97 98 2.515071 GGAGGCGGAGATCCATGCT 61.515 63.158 0.00 0.00 35.37 3.79
98 99 1.188219 GGAGGCGGAGATCCATGCTA 61.188 60.000 0.00 0.00 35.37 3.49
99 100 0.901124 GAGGCGGAGATCCATGCTAT 59.099 55.000 0.00 0.00 35.14 2.97
100 101 0.901124 AGGCGGAGATCCATGCTATC 59.099 55.000 0.00 0.00 35.14 2.08
101 102 0.610174 GGCGGAGATCCATGCTATCA 59.390 55.000 8.48 0.00 35.14 2.15
102 103 1.209019 GGCGGAGATCCATGCTATCAT 59.791 52.381 8.48 0.00 35.14 2.45
104 105 2.277969 CGGAGATCCATGCTATCATGC 58.722 52.381 0.83 0.00 46.69 4.06
105 106 2.354403 CGGAGATCCATGCTATCATGCA 60.354 50.000 0.83 0.00 46.69 3.96
106 107 3.271729 GGAGATCCATGCTATCATGCAG 58.728 50.000 0.83 0.00 46.69 4.41
107 108 3.271729 GAGATCCATGCTATCATGCAGG 58.728 50.000 0.83 0.00 46.69 4.85
113 114 2.865119 TGCTATCATGCAGGGTATGG 57.135 50.000 0.00 0.00 38.12 2.74
114 115 1.271543 TGCTATCATGCAGGGTATGGC 60.272 52.381 0.00 0.00 38.12 4.40
115 116 1.004044 GCTATCATGCAGGGTATGGCT 59.996 52.381 0.00 0.00 0.00 4.75
116 117 2.553904 GCTATCATGCAGGGTATGGCTT 60.554 50.000 0.00 0.00 0.00 4.35
117 118 2.761786 ATCATGCAGGGTATGGCTTT 57.238 45.000 0.00 0.00 0.00 3.51
118 119 1.766494 TCATGCAGGGTATGGCTTTG 58.234 50.000 0.00 0.00 0.00 2.77
119 120 0.748450 CATGCAGGGTATGGCTTTGG 59.252 55.000 0.00 0.00 0.00 3.28
120 121 1.044790 ATGCAGGGTATGGCTTTGGC 61.045 55.000 0.00 0.00 37.82 4.52
134 135 3.214023 TTGGCCATCCAACACACAA 57.786 47.368 6.09 0.00 46.89 3.33
135 136 1.714541 TTGGCCATCCAACACACAAT 58.285 45.000 6.09 0.00 46.89 2.71
136 137 2.593925 TGGCCATCCAACACACAATA 57.406 45.000 0.00 0.00 39.99 1.90
137 138 2.166829 TGGCCATCCAACACACAATAC 58.833 47.619 0.00 0.00 39.99 1.89
138 139 2.224992 TGGCCATCCAACACACAATACT 60.225 45.455 0.00 0.00 39.99 2.12
139 140 2.825532 GGCCATCCAACACACAATACTT 59.174 45.455 0.00 0.00 0.00 2.24
140 141 3.119495 GGCCATCCAACACACAATACTTC 60.119 47.826 0.00 0.00 0.00 3.01
141 142 3.119495 GCCATCCAACACACAATACTTCC 60.119 47.826 0.00 0.00 0.00 3.46
142 143 3.126858 CCATCCAACACACAATACTTCCG 59.873 47.826 0.00 0.00 0.00 4.30
143 144 2.773487 TCCAACACACAATACTTCCGG 58.227 47.619 0.00 0.00 0.00 5.14
144 145 2.105134 TCCAACACACAATACTTCCGGT 59.895 45.455 0.00 0.00 0.00 5.28
145 146 2.225491 CCAACACACAATACTTCCGGTG 59.775 50.000 0.00 0.00 37.29 4.94
146 147 2.178912 ACACACAATACTTCCGGTGG 57.821 50.000 0.00 0.00 35.62 4.61
147 148 1.418637 ACACACAATACTTCCGGTGGT 59.581 47.619 0.00 4.19 35.62 4.16
148 149 2.158726 ACACACAATACTTCCGGTGGTT 60.159 45.455 0.00 0.00 35.62 3.67
149 150 2.225491 CACACAATACTTCCGGTGGTTG 59.775 50.000 0.00 8.37 35.62 3.77
150 151 2.158726 ACACAATACTTCCGGTGGTTGT 60.159 45.455 0.00 8.95 38.04 3.32
151 152 2.225491 CACAATACTTCCGGTGGTTGTG 59.775 50.000 21.81 21.81 42.89 3.33
152 153 1.199097 CAATACTTCCGGTGGTTGTGC 59.801 52.381 0.00 0.00 0.00 4.57
153 154 0.398696 ATACTTCCGGTGGTTGTGCA 59.601 50.000 0.00 0.00 0.00 4.57
154 155 0.250124 TACTTCCGGTGGTTGTGCAG 60.250 55.000 0.00 0.00 0.00 4.41
155 156 1.525995 CTTCCGGTGGTTGTGCAGT 60.526 57.895 0.00 0.00 0.00 4.40
156 157 1.507141 CTTCCGGTGGTTGTGCAGTC 61.507 60.000 0.00 0.00 0.00 3.51
157 158 2.951475 TTCCGGTGGTTGTGCAGTCC 62.951 60.000 0.00 0.00 0.00 3.85
158 159 3.345808 CGGTGGTTGTGCAGTCCG 61.346 66.667 0.00 0.00 0.00 4.79
159 160 2.110213 GGTGGTTGTGCAGTCCGA 59.890 61.111 0.00 0.00 0.00 4.55
160 161 2.251642 GGTGGTTGTGCAGTCCGAC 61.252 63.158 0.00 0.00 0.00 4.79
161 162 1.227556 GTGGTTGTGCAGTCCGACT 60.228 57.895 0.00 0.00 0.00 4.18
162 163 1.069090 TGGTTGTGCAGTCCGACTC 59.931 57.895 0.00 0.00 0.00 3.36
163 164 2.022129 GGTTGTGCAGTCCGACTCG 61.022 63.158 0.00 0.00 0.00 4.18
181 182 3.805267 GCGATTGGCCTCTGAGTG 58.195 61.111 3.32 0.00 34.80 3.51
182 183 1.078848 GCGATTGGCCTCTGAGTGT 60.079 57.895 3.32 0.00 34.80 3.55
183 184 0.674895 GCGATTGGCCTCTGAGTGTT 60.675 55.000 3.32 0.00 34.80 3.32
184 185 1.081892 CGATTGGCCTCTGAGTGTTG 58.918 55.000 3.32 0.00 0.00 3.33
185 186 1.457346 GATTGGCCTCTGAGTGTTGG 58.543 55.000 3.32 0.00 0.00 3.77
186 187 0.610232 ATTGGCCTCTGAGTGTTGGC 60.610 55.000 3.32 0.00 44.22 4.52
187 188 1.708993 TTGGCCTCTGAGTGTTGGCT 61.709 55.000 3.32 0.00 44.36 4.75
188 189 0.835971 TGGCCTCTGAGTGTTGGCTA 60.836 55.000 3.32 0.00 44.36 3.93
189 190 0.391793 GGCCTCTGAGTGTTGGCTAC 60.392 60.000 3.66 0.00 44.36 3.58
190 191 0.610687 GCCTCTGAGTGTTGGCTACT 59.389 55.000 3.66 0.00 41.92 2.57
191 192 1.674221 GCCTCTGAGTGTTGGCTACTG 60.674 57.143 3.66 0.00 41.92 2.74
192 193 1.895798 CCTCTGAGTGTTGGCTACTGA 59.104 52.381 3.66 0.00 0.00 3.41
193 194 2.499289 CCTCTGAGTGTTGGCTACTGAT 59.501 50.000 3.66 0.00 0.00 2.90
194 195 3.519579 CTCTGAGTGTTGGCTACTGATG 58.480 50.000 0.01 0.00 0.00 3.07
195 196 2.234661 TCTGAGTGTTGGCTACTGATGG 59.765 50.000 0.01 0.00 0.00 3.51
196 197 1.339055 TGAGTGTTGGCTACTGATGGC 60.339 52.381 0.01 0.00 0.00 4.40
202 203 4.865865 GCTACTGATGGCCTCACC 57.134 61.111 3.32 0.00 39.84 4.02
211 212 4.421365 GGCCTCACCAAATCAGCA 57.579 55.556 0.00 0.00 38.86 4.41
212 213 2.892025 GGCCTCACCAAATCAGCAT 58.108 52.632 0.00 0.00 38.86 3.79
213 214 2.057137 GGCCTCACCAAATCAGCATA 57.943 50.000 0.00 0.00 38.86 3.14
214 215 2.590821 GGCCTCACCAAATCAGCATAT 58.409 47.619 0.00 0.00 38.86 1.78
215 216 2.295349 GGCCTCACCAAATCAGCATATG 59.705 50.000 0.00 0.00 38.86 1.78
216 217 2.295349 GCCTCACCAAATCAGCATATGG 59.705 50.000 4.56 0.00 38.91 2.74
217 218 2.889045 CCTCACCAAATCAGCATATGGG 59.111 50.000 4.56 0.00 37.26 4.00
218 219 2.295349 CTCACCAAATCAGCATATGGGC 59.705 50.000 4.56 0.00 37.26 5.36
219 220 2.033372 CACCAAATCAGCATATGGGCA 58.967 47.619 4.56 0.00 37.26 5.36
220 221 2.631062 CACCAAATCAGCATATGGGCAT 59.369 45.455 4.56 0.00 37.26 4.40
221 222 2.895404 ACCAAATCAGCATATGGGCATC 59.105 45.455 4.56 0.00 37.26 3.91
222 223 3.162666 CCAAATCAGCATATGGGCATCT 58.837 45.455 4.56 0.00 35.83 2.90
223 224 3.056821 CCAAATCAGCATATGGGCATCTG 60.057 47.826 4.56 3.03 35.83 2.90
224 225 3.801307 AATCAGCATATGGGCATCTGA 57.199 42.857 11.01 11.01 38.05 3.27
225 226 4.317530 AATCAGCATATGGGCATCTGAT 57.682 40.909 13.80 13.80 43.85 2.90
226 227 3.345508 TCAGCATATGGGCATCTGATC 57.654 47.619 4.56 0.00 35.83 2.92
227 228 2.026542 TCAGCATATGGGCATCTGATCC 60.027 50.000 4.56 0.00 35.83 3.36
228 229 1.284198 AGCATATGGGCATCTGATCCC 59.716 52.381 14.59 14.59 42.93 3.85
229 230 2.015588 GCATATGGGCATCTGATCCCG 61.016 57.143 15.73 6.90 45.60 5.14
230 231 0.914644 ATATGGGCATCTGATCCCGG 59.085 55.000 15.73 0.00 45.60 5.73
231 232 0.178906 TATGGGCATCTGATCCCGGA 60.179 55.000 0.73 0.00 45.60 5.14
232 233 1.486997 ATGGGCATCTGATCCCGGAG 61.487 60.000 0.73 0.00 45.60 4.63
233 234 1.838846 GGGCATCTGATCCCGGAGA 60.839 63.158 0.73 0.00 32.00 3.71
234 235 1.197430 GGGCATCTGATCCCGGAGAT 61.197 60.000 0.73 3.62 38.17 2.75
235 236 0.689623 GGCATCTGATCCCGGAGATT 59.310 55.000 0.73 0.00 34.42 2.40
236 237 1.902508 GGCATCTGATCCCGGAGATTA 59.097 52.381 0.73 0.00 34.42 1.75
237 238 2.303022 GGCATCTGATCCCGGAGATTAA 59.697 50.000 0.73 0.00 34.42 1.40
238 239 3.244561 GGCATCTGATCCCGGAGATTAAA 60.245 47.826 0.73 0.00 34.42 1.52
239 240 3.999663 GCATCTGATCCCGGAGATTAAAG 59.000 47.826 0.73 4.26 34.42 1.85
240 241 4.262635 GCATCTGATCCCGGAGATTAAAGA 60.263 45.833 0.73 9.22 34.42 2.52
241 242 5.477510 CATCTGATCCCGGAGATTAAAGAG 58.522 45.833 0.73 0.00 34.42 2.85
242 243 4.547671 TCTGATCCCGGAGATTAAAGAGT 58.452 43.478 0.73 0.00 34.42 3.24
243 244 4.962995 TCTGATCCCGGAGATTAAAGAGTT 59.037 41.667 0.73 0.00 34.42 3.01
244 245 5.023533 TGATCCCGGAGATTAAAGAGTTG 57.976 43.478 0.73 0.00 34.42 3.16
245 246 4.714802 TGATCCCGGAGATTAAAGAGTTGA 59.285 41.667 0.73 0.00 34.42 3.18
246 247 5.366768 TGATCCCGGAGATTAAAGAGTTGAT 59.633 40.000 0.73 0.00 34.42 2.57
247 248 5.023533 TCCCGGAGATTAAAGAGTTGATG 57.976 43.478 0.73 0.00 0.00 3.07
248 249 4.714802 TCCCGGAGATTAAAGAGTTGATGA 59.285 41.667 0.73 0.00 0.00 2.92
249 250 5.188948 TCCCGGAGATTAAAGAGTTGATGAA 59.811 40.000 0.73 0.00 0.00 2.57
250 251 5.525378 CCCGGAGATTAAAGAGTTGATGAAG 59.475 44.000 0.73 0.00 0.00 3.02
251 252 5.525378 CCGGAGATTAAAGAGTTGATGAAGG 59.475 44.000 0.00 0.00 0.00 3.46
252 253 6.341316 CGGAGATTAAAGAGTTGATGAAGGA 58.659 40.000 0.00 0.00 0.00 3.36
253 254 6.818644 CGGAGATTAAAGAGTTGATGAAGGAA 59.181 38.462 0.00 0.00 0.00 3.36
254 255 7.334421 CGGAGATTAAAGAGTTGATGAAGGAAA 59.666 37.037 0.00 0.00 0.00 3.13
255 256 8.672815 GGAGATTAAAGAGTTGATGAAGGAAAG 58.327 37.037 0.00 0.00 0.00 2.62
256 257 8.572855 AGATTAAAGAGTTGATGAAGGAAAGG 57.427 34.615 0.00 0.00 0.00 3.11
257 258 7.613411 AGATTAAAGAGTTGATGAAGGAAAGGG 59.387 37.037 0.00 0.00 0.00 3.95
258 259 5.324832 AAAGAGTTGATGAAGGAAAGGGA 57.675 39.130 0.00 0.00 0.00 4.20
259 260 4.566426 AGAGTTGATGAAGGAAAGGGAG 57.434 45.455 0.00 0.00 0.00 4.30
260 261 3.913163 AGAGTTGATGAAGGAAAGGGAGT 59.087 43.478 0.00 0.00 0.00 3.85
261 262 4.352298 AGAGTTGATGAAGGAAAGGGAGTT 59.648 41.667 0.00 0.00 0.00 3.01
262 263 5.066913 AGTTGATGAAGGAAAGGGAGTTT 57.933 39.130 0.00 0.00 0.00 2.66
263 264 5.458595 AGTTGATGAAGGAAAGGGAGTTTT 58.541 37.500 0.00 0.00 0.00 2.43
264 265 5.899547 AGTTGATGAAGGAAAGGGAGTTTTT 59.100 36.000 0.00 0.00 0.00 1.94
265 266 7.066781 AGTTGATGAAGGAAAGGGAGTTTTTA 58.933 34.615 0.00 0.00 0.00 1.52
266 267 6.894339 TGATGAAGGAAAGGGAGTTTTTAC 57.106 37.500 0.00 0.00 0.00 2.01
267 268 5.773176 TGATGAAGGAAAGGGAGTTTTTACC 59.227 40.000 0.00 0.00 0.00 2.85
268 269 5.397553 TGAAGGAAAGGGAGTTTTTACCT 57.602 39.130 0.00 0.00 35.78 3.08
269 270 5.382616 TGAAGGAAAGGGAGTTTTTACCTC 58.617 41.667 0.00 0.00 32.29 3.85
270 271 5.103855 TGAAGGAAAGGGAGTTTTTACCTCA 60.104 40.000 0.00 0.00 32.29 3.86
271 272 4.986783 AGGAAAGGGAGTTTTTACCTCAG 58.013 43.478 0.00 0.00 32.29 3.35
272 273 4.663592 AGGAAAGGGAGTTTTTACCTCAGA 59.336 41.667 0.00 0.00 32.29 3.27
273 274 5.133830 AGGAAAGGGAGTTTTTACCTCAGAA 59.866 40.000 0.00 0.00 32.29 3.02
274 275 5.831525 GGAAAGGGAGTTTTTACCTCAGAAA 59.168 40.000 0.00 0.00 32.29 2.52
275 276 6.493802 GGAAAGGGAGTTTTTACCTCAGAAAT 59.506 38.462 0.00 0.00 32.29 2.17
276 277 7.015292 GGAAAGGGAGTTTTTACCTCAGAAATT 59.985 37.037 0.00 0.00 32.29 1.82
277 278 9.074576 GAAAGGGAGTTTTTACCTCAGAAATTA 57.925 33.333 0.00 0.00 32.29 1.40
278 279 7.997773 AGGGAGTTTTTACCTCAGAAATTAC 57.002 36.000 0.00 0.00 0.00 1.89
279 280 7.523415 AGGGAGTTTTTACCTCAGAAATTACA 58.477 34.615 0.00 0.00 0.00 2.41
280 281 8.170730 AGGGAGTTTTTACCTCAGAAATTACAT 58.829 33.333 0.00 0.00 0.00 2.29
281 282 8.803235 GGGAGTTTTTACCTCAGAAATTACATT 58.197 33.333 0.00 0.00 0.00 2.71
282 283 9.626045 GGAGTTTTTACCTCAGAAATTACATTG 57.374 33.333 0.00 0.00 0.00 2.82
289 290 9.653287 TTACCTCAGAAATTACATTGTAGTCAG 57.347 33.333 0.00 0.00 0.00 3.51
290 291 7.907389 ACCTCAGAAATTACATTGTAGTCAGA 58.093 34.615 0.00 0.00 0.00 3.27
291 292 8.375506 ACCTCAGAAATTACATTGTAGTCAGAA 58.624 33.333 0.00 0.00 0.00 3.02
292 293 9.388506 CCTCAGAAATTACATTGTAGTCAGAAT 57.611 33.333 0.00 0.00 0.00 2.40
303 304 9.682465 ACATTGTAGTCAGAATAGTGTAGTAGA 57.318 33.333 0.00 0.00 0.00 2.59
307 308 9.121658 TGTAGTCAGAATAGTGTAGTAGATTGG 57.878 37.037 0.00 0.00 0.00 3.16
308 309 9.122779 GTAGTCAGAATAGTGTAGTAGATTGGT 57.877 37.037 0.00 0.00 0.00 3.67
309 310 8.596781 AGTCAGAATAGTGTAGTAGATTGGTT 57.403 34.615 0.00 0.00 0.00 3.67
310 311 8.470805 AGTCAGAATAGTGTAGTAGATTGGTTG 58.529 37.037 0.00 0.00 0.00 3.77
311 312 7.707035 GTCAGAATAGTGTAGTAGATTGGTTGG 59.293 40.741 0.00 0.00 0.00 3.77
312 313 6.480320 CAGAATAGTGTAGTAGATTGGTTGGC 59.520 42.308 0.00 0.00 0.00 4.52
313 314 5.950544 ATAGTGTAGTAGATTGGTTGGCA 57.049 39.130 0.00 0.00 0.00 4.92
314 315 4.634012 AGTGTAGTAGATTGGTTGGCAA 57.366 40.909 0.00 0.00 0.00 4.52
315 316 5.179452 AGTGTAGTAGATTGGTTGGCAAT 57.821 39.130 1.92 0.00 0.00 3.56
316 317 6.308015 AGTGTAGTAGATTGGTTGGCAATA 57.692 37.500 1.92 0.00 0.00 1.90
317 318 6.900194 AGTGTAGTAGATTGGTTGGCAATAT 58.100 36.000 1.92 0.00 0.00 1.28
318 319 8.029782 AGTGTAGTAGATTGGTTGGCAATATA 57.970 34.615 1.92 0.00 0.00 0.86
319 320 8.150945 AGTGTAGTAGATTGGTTGGCAATATAG 58.849 37.037 1.92 0.00 0.00 1.31
320 321 6.934645 TGTAGTAGATTGGTTGGCAATATAGC 59.065 38.462 1.92 0.00 0.00 2.97
327 328 3.253955 GGCAATATAGCCGCACCG 58.746 61.111 0.00 0.00 46.12 4.94
328 329 1.301401 GGCAATATAGCCGCACCGA 60.301 57.895 0.00 0.00 46.12 4.69
329 330 1.291877 GGCAATATAGCCGCACCGAG 61.292 60.000 0.00 0.00 46.12 4.63
330 331 1.901650 GCAATATAGCCGCACCGAGC 61.902 60.000 0.00 0.00 40.87 5.03
344 345 3.414700 GAGCGAACCACGGCTGTG 61.415 66.667 19.25 19.25 46.00 3.66
345 346 4.235762 AGCGAACCACGGCTGTGT 62.236 61.111 23.77 6.71 44.92 3.72
346 347 4.012895 GCGAACCACGGCTGTGTG 62.013 66.667 23.77 16.97 44.92 3.82
352 353 2.203139 CACGGCTGTGTGGGTTCA 60.203 61.111 17.96 0.00 41.34 3.18
353 354 2.203153 ACGGCTGTGTGGGTTCAC 60.203 61.111 0.00 0.00 43.87 3.18
354 355 2.111043 CGGCTGTGTGGGTTCACT 59.889 61.111 0.00 0.00 43.94 3.41
355 356 1.961277 CGGCTGTGTGGGTTCACTC 60.961 63.158 0.00 0.00 43.94 3.51
356 357 1.961277 GGCTGTGTGGGTTCACTCG 60.961 63.158 0.00 0.00 43.94 4.18
357 358 1.961277 GCTGTGTGGGTTCACTCGG 60.961 63.158 0.00 0.00 43.94 4.63
358 359 1.445942 CTGTGTGGGTTCACTCGGT 59.554 57.895 0.00 0.00 43.94 4.69
359 360 0.179056 CTGTGTGGGTTCACTCGGTT 60.179 55.000 0.00 0.00 43.94 4.44
360 361 0.179067 TGTGTGGGTTCACTCGGTTC 60.179 55.000 0.00 0.00 43.94 3.62
361 362 0.883370 GTGTGGGTTCACTCGGTTCC 60.883 60.000 0.00 0.00 43.94 3.62
362 363 1.338890 TGTGGGTTCACTCGGTTCCA 61.339 55.000 0.00 0.00 43.94 3.53
363 364 0.883370 GTGGGTTCACTCGGTTCCAC 60.883 60.000 0.00 0.00 40.58 4.02
364 365 1.302271 GGGTTCACTCGGTTCCACC 60.302 63.158 0.00 0.00 34.05 4.61
365 366 1.752833 GGTTCACTCGGTTCCACCT 59.247 57.895 0.00 0.00 35.66 4.00
366 367 0.108019 GGTTCACTCGGTTCCACCTT 59.892 55.000 0.00 0.00 35.66 3.50
367 368 1.345415 GGTTCACTCGGTTCCACCTTA 59.655 52.381 0.00 0.00 35.66 2.69
368 369 2.027469 GGTTCACTCGGTTCCACCTTAT 60.027 50.000 0.00 0.00 35.66 1.73
369 370 3.196254 GGTTCACTCGGTTCCACCTTATA 59.804 47.826 0.00 0.00 35.66 0.98
370 371 4.141779 GGTTCACTCGGTTCCACCTTATAT 60.142 45.833 0.00 0.00 35.66 0.86
371 372 5.425630 GTTCACTCGGTTCCACCTTATATT 58.574 41.667 0.00 0.00 35.66 1.28
372 373 5.018539 TCACTCGGTTCCACCTTATATTG 57.981 43.478 0.00 0.00 35.66 1.90
373 374 4.712829 TCACTCGGTTCCACCTTATATTGA 59.287 41.667 0.00 0.00 35.66 2.57
374 375 5.050490 CACTCGGTTCCACCTTATATTGAG 58.950 45.833 0.00 0.00 35.66 3.02
375 376 4.101119 ACTCGGTTCCACCTTATATTGAGG 59.899 45.833 3.86 3.86 35.66 3.86
376 377 4.291792 TCGGTTCCACCTTATATTGAGGA 58.708 43.478 10.81 0.00 35.66 3.71
377 378 4.905456 TCGGTTCCACCTTATATTGAGGAT 59.095 41.667 10.81 0.00 35.66 3.24
378 379 5.011738 TCGGTTCCACCTTATATTGAGGATC 59.988 44.000 10.81 0.00 35.66 3.36
379 380 5.012148 CGGTTCCACCTTATATTGAGGATCT 59.988 44.000 10.81 0.00 35.66 2.75
380 381 6.464465 CGGTTCCACCTTATATTGAGGATCTT 60.464 42.308 10.81 0.00 35.66 2.40
381 382 7.290813 GGTTCCACCTTATATTGAGGATCTTT 58.709 38.462 10.81 0.00 37.72 2.52
382 383 7.229506 GGTTCCACCTTATATTGAGGATCTTTG 59.770 40.741 10.81 0.58 37.72 2.77
383 384 6.841601 TCCACCTTATATTGAGGATCTTTGG 58.158 40.000 10.81 7.92 37.72 3.28
384 385 5.474876 CCACCTTATATTGAGGATCTTTGGC 59.525 44.000 10.81 0.00 37.72 4.52
385 386 5.474876 CACCTTATATTGAGGATCTTTGGCC 59.525 44.000 10.81 0.00 37.72 5.36
386 387 5.373854 ACCTTATATTGAGGATCTTTGGCCT 59.626 40.000 3.32 0.00 37.72 5.19
390 391 3.677002 GAGGATCTTTGGCCTCTCG 57.323 57.895 3.32 0.00 45.72 4.04
391 392 1.115467 GAGGATCTTTGGCCTCTCGA 58.885 55.000 3.32 0.00 45.72 4.04
392 393 1.691434 GAGGATCTTTGGCCTCTCGAT 59.309 52.381 3.32 0.26 45.72 3.59
393 394 2.103941 GAGGATCTTTGGCCTCTCGATT 59.896 50.000 3.32 0.00 45.72 3.34
394 395 2.158842 AGGATCTTTGGCCTCTCGATTG 60.159 50.000 3.32 0.00 0.00 2.67
395 396 2.420687 GGATCTTTGGCCTCTCGATTGT 60.421 50.000 3.32 0.00 0.00 2.71
396 397 3.181465 GGATCTTTGGCCTCTCGATTGTA 60.181 47.826 3.32 0.00 0.00 2.41
397 398 3.973206 TCTTTGGCCTCTCGATTGTAA 57.027 42.857 3.32 0.00 0.00 2.41
398 399 3.596214 TCTTTGGCCTCTCGATTGTAAC 58.404 45.455 3.32 0.00 0.00 2.50
399 400 3.007506 TCTTTGGCCTCTCGATTGTAACA 59.992 43.478 3.32 0.00 0.00 2.41
400 401 2.380084 TGGCCTCTCGATTGTAACAC 57.620 50.000 3.32 0.00 0.00 3.32
401 402 1.899814 TGGCCTCTCGATTGTAACACT 59.100 47.619 3.32 0.00 0.00 3.55
402 403 2.271800 GGCCTCTCGATTGTAACACTG 58.728 52.381 0.00 0.00 0.00 3.66
403 404 2.353803 GGCCTCTCGATTGTAACACTGT 60.354 50.000 0.00 0.00 0.00 3.55
404 405 2.668457 GCCTCTCGATTGTAACACTGTG 59.332 50.000 6.19 6.19 0.00 3.66
405 406 3.614150 GCCTCTCGATTGTAACACTGTGA 60.614 47.826 15.86 0.00 0.00 3.58
406 407 3.921021 CCTCTCGATTGTAACACTGTGAC 59.079 47.826 15.86 3.64 0.00 3.67
407 408 4.546570 CTCTCGATTGTAACACTGTGACA 58.453 43.478 15.86 6.51 0.00 3.58
408 409 4.939271 TCTCGATTGTAACACTGTGACAA 58.061 39.130 15.86 13.58 40.64 3.18
409 410 5.538118 TCTCGATTGTAACACTGTGACAAT 58.462 37.500 20.79 20.79 46.68 2.71
410 411 5.405269 TCTCGATTGTAACACTGTGACAATG 59.595 40.000 24.33 17.20 44.78 2.82
411 412 4.084066 TCGATTGTAACACTGTGACAATGC 60.084 41.667 24.33 15.95 44.78 3.56
412 413 4.319405 CGATTGTAACACTGTGACAATGCA 60.319 41.667 24.33 11.41 44.78 3.96
413 414 4.972514 TTGTAACACTGTGACAATGCAA 57.027 36.364 15.86 10.15 32.53 4.08
414 415 5.512753 TTGTAACACTGTGACAATGCAAT 57.487 34.783 15.86 0.00 32.53 3.56
415 416 6.625873 TTGTAACACTGTGACAATGCAATA 57.374 33.333 15.86 0.00 32.53 1.90
416 417 6.625873 TGTAACACTGTGACAATGCAATAA 57.374 33.333 15.86 0.00 0.00 1.40
417 418 7.032377 TGTAACACTGTGACAATGCAATAAA 57.968 32.000 15.86 0.00 0.00 1.40
418 419 7.484140 TGTAACACTGTGACAATGCAATAAAA 58.516 30.769 15.86 0.00 0.00 1.52
419 420 6.826893 AACACTGTGACAATGCAATAAAAC 57.173 33.333 15.86 0.00 0.00 2.43
420 421 6.147864 ACACTGTGACAATGCAATAAAACT 57.852 33.333 15.86 0.00 0.00 2.66
421 422 6.208644 ACACTGTGACAATGCAATAAAACTC 58.791 36.000 15.86 0.00 0.00 3.01
422 423 5.630680 CACTGTGACAATGCAATAAAACTCC 59.369 40.000 0.32 0.00 0.00 3.85
423 424 5.132897 TGTGACAATGCAATAAAACTCCC 57.867 39.130 0.00 0.00 0.00 4.30
424 425 4.832266 TGTGACAATGCAATAAAACTCCCT 59.168 37.500 0.00 0.00 0.00 4.20
425 426 5.304101 TGTGACAATGCAATAAAACTCCCTT 59.696 36.000 0.00 0.00 0.00 3.95
426 427 5.863935 GTGACAATGCAATAAAACTCCCTTC 59.136 40.000 0.00 0.00 0.00 3.46
427 428 5.774690 TGACAATGCAATAAAACTCCCTTCT 59.225 36.000 0.00 0.00 0.00 2.85
428 429 6.945435 TGACAATGCAATAAAACTCCCTTCTA 59.055 34.615 0.00 0.00 0.00 2.10
429 430 7.094377 TGACAATGCAATAAAACTCCCTTCTAC 60.094 37.037 0.00 0.00 0.00 2.59
430 431 6.152831 ACAATGCAATAAAACTCCCTTCTACC 59.847 38.462 0.00 0.00 0.00 3.18
431 432 4.595986 TGCAATAAAACTCCCTTCTACCC 58.404 43.478 0.00 0.00 0.00 3.69
432 433 3.952323 GCAATAAAACTCCCTTCTACCCC 59.048 47.826 0.00 0.00 0.00 4.95
433 434 4.196971 CAATAAAACTCCCTTCTACCCCG 58.803 47.826 0.00 0.00 0.00 5.73
434 435 0.327259 AAAACTCCCTTCTACCCCGC 59.673 55.000 0.00 0.00 0.00 6.13
435 436 0.838987 AAACTCCCTTCTACCCCGCA 60.839 55.000 0.00 0.00 0.00 5.69
436 437 0.838987 AACTCCCTTCTACCCCGCAA 60.839 55.000 0.00 0.00 0.00 4.85
437 438 0.838987 ACTCCCTTCTACCCCGCAAA 60.839 55.000 0.00 0.00 0.00 3.68
438 439 0.326927 CTCCCTTCTACCCCGCAAAA 59.673 55.000 0.00 0.00 0.00 2.44
444 445 5.104024 TCCCTTCTACCCCGCAAAATAAATA 60.104 40.000 0.00 0.00 0.00 1.40
447 448 7.201965 CCCTTCTACCCCGCAAAATAAATAAAT 60.202 37.037 0.00 0.00 0.00 1.40
476 477 7.539366 GTGCTTACAAAACAAGTGTTCACTAAA 59.461 33.333 5.87 0.00 37.25 1.85
535 537 4.761975 TGATCAGGTAAATCACGGGTTAC 58.238 43.478 0.00 0.00 0.00 2.50
543 545 7.054491 GGTAAATCACGGGTTACCTATTAGA 57.946 40.000 9.41 0.00 43.96 2.10
544 546 7.500141 GGTAAATCACGGGTTACCTATTAGAA 58.500 38.462 9.41 0.00 43.96 2.10
545 547 8.152898 GGTAAATCACGGGTTACCTATTAGAAT 58.847 37.037 9.41 0.00 43.96 2.40
610 612 7.147976 AGTAGTTCATGTTGCAAAGATTTTCC 58.852 34.615 0.00 0.00 0.00 3.13
612 614 6.347696 AGTTCATGTTGCAAAGATTTTCCAA 58.652 32.000 0.00 0.00 0.00 3.53
621 623 4.933400 GCAAAGATTTTCCAATGCAGATGT 59.067 37.500 0.00 0.00 34.10 3.06
629 631 0.027716 CAATGCAGATGTCTCGCAGC 59.972 55.000 0.00 0.00 39.39 5.25
635 637 1.060266 CAGATGTCTCGCAGCTTTTCG 59.940 52.381 0.00 0.00 41.72 3.46
678 684 9.965902 ATAGACAATCTTAAAGACAAAGATGGT 57.034 29.630 5.71 5.71 45.94 3.55
679 685 8.103948 AGACAATCTTAAAGACAAAGATGGTG 57.896 34.615 9.92 4.01 44.20 4.17
680 686 7.721399 AGACAATCTTAAAGACAAAGATGGTGT 59.279 33.333 9.92 6.69 44.20 4.16
681 687 7.651808 ACAATCTTAAAGACAAAGATGGTGTG 58.348 34.615 5.30 0.96 43.11 3.82
682 688 5.689383 TCTTAAAGACAAAGATGGTGTGC 57.311 39.130 0.00 0.00 0.00 4.57
683 689 4.518970 TCTTAAAGACAAAGATGGTGTGCC 59.481 41.667 0.00 0.00 0.00 5.01
686 695 0.238289 GACAAAGATGGTGTGCCGTG 59.762 55.000 0.00 0.00 37.67 4.94
702 711 4.386951 TGTGCGGCCATGCGTAGT 62.387 61.111 2.24 0.00 37.81 2.73
746 755 1.527311 GTTTGCAAGAGACTGGACGTC 59.473 52.381 7.13 7.13 43.17 4.34
759 769 1.073177 GGACGTCGTTGTGGTATTGG 58.927 55.000 9.92 0.00 0.00 3.16
769 779 1.551430 TGTGGTATTGGGTCGTAGTGG 59.449 52.381 0.00 0.00 0.00 4.00
839 870 1.134580 CCACTCTAGCCCATCACACTG 60.135 57.143 0.00 0.00 0.00 3.66
1050 1081 2.520982 TACATCTCCTCGCCCCGG 60.521 66.667 0.00 0.00 0.00 5.73
1140 1171 2.790468 CGACTCGGTCTACCAAATCGTC 60.790 54.545 0.00 0.00 35.14 4.20
1473 1504 1.448540 CGCCAAGATCTGCTCCGTT 60.449 57.895 0.00 0.00 0.00 4.44
1485 1516 3.606065 CTCCGTTCGCGAGACCGTT 62.606 63.158 9.59 0.00 45.07 4.44
1668 1699 2.264455 ACCTTCAACATCCTGCTCTCT 58.736 47.619 0.00 0.00 0.00 3.10
1845 1876 1.402787 ATGAAATTGCCCCCGATGTC 58.597 50.000 0.00 0.00 0.00 3.06
1881 1912 0.331278 TGATTGGCGGATTGGGACTT 59.669 50.000 0.00 0.00 0.00 3.01
1989 2020 6.182634 CACAATACGGAACTTTGTTATAGCG 58.817 40.000 0.00 0.00 31.48 4.26
2031 2062 1.561717 CGTTGACGGACGAAATGGCA 61.562 55.000 0.00 0.00 45.47 4.92
2034 2065 1.081556 TGACGGACGAAATGGCATCG 61.082 55.000 8.83 8.83 45.47 3.84
2100 2131 4.304939 GGTTCTATTACTGGGCGTATGAC 58.695 47.826 0.00 0.00 0.00 3.06
2181 2212 6.016024 ACACACAGTCTTGCATGTTTATCATT 60.016 34.615 0.00 0.00 34.09 2.57
2232 2263 0.838122 AAGCACTAGAGCTGTGGGGT 60.838 55.000 15.76 0.00 45.89 4.95
2301 2332 6.326375 TGTTTTGTTTGACCTGTTATGTGAC 58.674 36.000 0.00 0.00 0.00 3.67
2622 2653 4.016444 TGACCAGGGAAATAGTTGAATGC 58.984 43.478 0.00 0.00 0.00 3.56
2713 2747 7.448748 AGATATTGGTTAGTCGTTTTGCTTT 57.551 32.000 0.00 0.00 0.00 3.51
2785 2819 7.186570 TCAGGATGTTATTGAGAGACAATCA 57.813 36.000 0.00 0.00 42.01 2.57
2876 3072 2.124507 TAGCCTGCCTGTTGGACCAC 62.125 60.000 0.00 0.00 34.57 4.16
2880 3076 0.250858 CTGCCTGTTGGACCACATGA 60.251 55.000 0.00 0.00 34.57 3.07
2930 3126 8.974408 CATATGAAATTGAAACTGCATATGGTG 58.026 33.333 4.56 0.00 40.42 4.17
2948 3170 2.919229 GGTGTACCAACGTTATGACGAG 59.081 50.000 17.68 8.46 43.11 4.18
3057 3279 5.221521 CGATTAGGAGATTTGGAGGATGTCA 60.222 44.000 0.00 0.00 0.00 3.58
3069 3291 3.119352 GGAGGATGTCAGCCAAATTTGTC 60.119 47.826 16.73 4.08 0.00 3.18
3070 3292 3.499338 AGGATGTCAGCCAAATTTGTCA 58.501 40.909 16.73 8.16 0.00 3.58
3181 3405 3.374764 AGGGAAGGAAAGCAAACACTTT 58.625 40.909 0.00 0.00 42.49 2.66
3182 3406 3.132824 AGGGAAGGAAAGCAAACACTTTG 59.867 43.478 0.00 0.00 39.93 2.77
3200 3425 6.929049 ACACTTTGTTGTCTCTCGATTTATCA 59.071 34.615 0.00 0.00 0.00 2.15
3202 3427 7.116948 CACTTTGTTGTCTCTCGATTTATCACT 59.883 37.037 0.00 0.00 0.00 3.41
3205 3430 7.351414 TGTTGTCTCTCGATTTATCACTTTG 57.649 36.000 0.00 0.00 0.00 2.77
3206 3431 6.368791 TGTTGTCTCTCGATTTATCACTTTGG 59.631 38.462 0.00 0.00 0.00 3.28
3207 3432 6.280855 TGTCTCTCGATTTATCACTTTGGA 57.719 37.500 0.00 0.00 0.00 3.53
3208 3433 6.333416 TGTCTCTCGATTTATCACTTTGGAG 58.667 40.000 0.00 0.00 0.00 3.86
3343 3597 2.353889 ACTGAATGAATGTGCATCGCTC 59.646 45.455 0.00 0.00 0.00 5.03
3379 3633 0.451783 CTATTGGGGCAAACGTCAGC 59.548 55.000 3.77 3.77 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.665679 CATCCCTCAACACGATTTCGG 59.334 52.381 4.84 0.00 44.95 4.30
1 2 1.665679 CCATCCCTCAACACGATTTCG 59.334 52.381 0.00 0.00 46.33 3.46
2 3 2.017049 CCCATCCCTCAACACGATTTC 58.983 52.381 0.00 0.00 0.00 2.17
3 4 1.354368 ACCCATCCCTCAACACGATTT 59.646 47.619 0.00 0.00 0.00 2.17
4 5 0.991920 ACCCATCCCTCAACACGATT 59.008 50.000 0.00 0.00 0.00 3.34
5 6 0.541863 GACCCATCCCTCAACACGAT 59.458 55.000 0.00 0.00 0.00 3.73
6 7 0.834261 TGACCCATCCCTCAACACGA 60.834 55.000 0.00 0.00 0.00 4.35
7 8 0.391661 CTGACCCATCCCTCAACACG 60.392 60.000 0.00 0.00 0.00 4.49
8 9 0.693049 ACTGACCCATCCCTCAACAC 59.307 55.000 0.00 0.00 0.00 3.32
9 10 1.444933 AACTGACCCATCCCTCAACA 58.555 50.000 0.00 0.00 0.00 3.33
10 11 2.677037 CGTAACTGACCCATCCCTCAAC 60.677 54.545 0.00 0.00 0.00 3.18
11 12 1.553248 CGTAACTGACCCATCCCTCAA 59.447 52.381 0.00 0.00 0.00 3.02
12 13 1.191535 CGTAACTGACCCATCCCTCA 58.808 55.000 0.00 0.00 0.00 3.86
13 14 0.464452 CCGTAACTGACCCATCCCTC 59.536 60.000 0.00 0.00 0.00 4.30
14 15 0.252558 ACCGTAACTGACCCATCCCT 60.253 55.000 0.00 0.00 0.00 4.20
15 16 1.137675 GTACCGTAACTGACCCATCCC 59.862 57.143 0.00 0.00 0.00 3.85
16 17 2.105766 AGTACCGTAACTGACCCATCC 58.894 52.381 0.00 0.00 0.00 3.51
25 26 0.037975 CCGCCAACAGTACCGTAACT 60.038 55.000 0.00 0.00 0.00 2.24
26 27 1.629345 GCCGCCAACAGTACCGTAAC 61.629 60.000 0.00 0.00 0.00 2.50
27 28 1.374505 GCCGCCAACAGTACCGTAA 60.375 57.895 0.00 0.00 0.00 3.18
28 29 1.818959 AAGCCGCCAACAGTACCGTA 61.819 55.000 0.00 0.00 0.00 4.02
29 30 1.818959 TAAGCCGCCAACAGTACCGT 61.819 55.000 0.00 0.00 0.00 4.83
30 31 0.461339 ATAAGCCGCCAACAGTACCG 60.461 55.000 0.00 0.00 0.00 4.02
31 32 1.296727 GATAAGCCGCCAACAGTACC 58.703 55.000 0.00 0.00 0.00 3.34
32 33 0.928229 CGATAAGCCGCCAACAGTAC 59.072 55.000 0.00 0.00 0.00 2.73
33 34 3.355816 CGATAAGCCGCCAACAGTA 57.644 52.632 0.00 0.00 0.00 2.74
34 35 4.201951 CGATAAGCCGCCAACAGT 57.798 55.556 0.00 0.00 0.00 3.55
45 46 8.491152 CATTCCAGTTAAACATAGAGCGATAAG 58.509 37.037 0.00 0.00 0.00 1.73
46 47 8.201464 TCATTCCAGTTAAACATAGAGCGATAA 58.799 33.333 0.00 0.00 0.00 1.75
47 48 7.652105 GTCATTCCAGTTAAACATAGAGCGATA 59.348 37.037 0.00 0.00 0.00 2.92
48 49 6.480320 GTCATTCCAGTTAAACATAGAGCGAT 59.520 38.462 0.00 0.00 0.00 4.58
49 50 5.810587 GTCATTCCAGTTAAACATAGAGCGA 59.189 40.000 0.00 0.00 0.00 4.93
50 51 5.276395 CGTCATTCCAGTTAAACATAGAGCG 60.276 44.000 0.00 0.00 0.00 5.03
51 52 5.502544 GCGTCATTCCAGTTAAACATAGAGC 60.503 44.000 0.00 0.00 0.00 4.09
52 53 5.812642 AGCGTCATTCCAGTTAAACATAGAG 59.187 40.000 0.00 0.00 0.00 2.43
53 54 5.730550 AGCGTCATTCCAGTTAAACATAGA 58.269 37.500 0.00 0.00 0.00 1.98
54 55 6.422776 AAGCGTCATTCCAGTTAAACATAG 57.577 37.500 0.00 0.00 0.00 2.23
55 56 6.348950 CCAAAGCGTCATTCCAGTTAAACATA 60.349 38.462 0.00 0.00 0.00 2.29
56 57 5.460646 CAAAGCGTCATTCCAGTTAAACAT 58.539 37.500 0.00 0.00 0.00 2.71
57 58 4.261405 CCAAAGCGTCATTCCAGTTAAACA 60.261 41.667 0.00 0.00 0.00 2.83
58 59 4.023536 TCCAAAGCGTCATTCCAGTTAAAC 60.024 41.667 0.00 0.00 0.00 2.01
59 60 4.138290 TCCAAAGCGTCATTCCAGTTAAA 58.862 39.130 0.00 0.00 0.00 1.52
60 61 3.745799 TCCAAAGCGTCATTCCAGTTAA 58.254 40.909 0.00 0.00 0.00 2.01
61 62 3.334691 CTCCAAAGCGTCATTCCAGTTA 58.665 45.455 0.00 0.00 0.00 2.24
62 63 2.154462 CTCCAAAGCGTCATTCCAGTT 58.846 47.619 0.00 0.00 0.00 3.16
63 64 1.611673 CCTCCAAAGCGTCATTCCAGT 60.612 52.381 0.00 0.00 0.00 4.00
64 65 1.089920 CCTCCAAAGCGTCATTCCAG 58.910 55.000 0.00 0.00 0.00 3.86
65 66 0.960364 GCCTCCAAAGCGTCATTCCA 60.960 55.000 0.00 0.00 0.00 3.53
66 67 1.803289 GCCTCCAAAGCGTCATTCC 59.197 57.895 0.00 0.00 0.00 3.01
74 75 1.524849 GGATCTCCGCCTCCAAAGC 60.525 63.158 0.00 0.00 0.00 3.51
75 76 0.471617 ATGGATCTCCGCCTCCAAAG 59.528 55.000 0.00 0.00 44.41 2.77
76 77 0.181114 CATGGATCTCCGCCTCCAAA 59.819 55.000 0.00 0.00 44.41 3.28
77 78 1.832219 CATGGATCTCCGCCTCCAA 59.168 57.895 0.00 0.00 44.41 3.53
78 79 2.811514 GCATGGATCTCCGCCTCCA 61.812 63.158 0.00 0.00 45.27 3.86
79 80 1.188219 TAGCATGGATCTCCGCCTCC 61.188 60.000 0.00 0.00 39.43 4.30
80 81 0.901124 ATAGCATGGATCTCCGCCTC 59.099 55.000 0.00 0.00 39.43 4.70
81 82 0.901124 GATAGCATGGATCTCCGCCT 59.099 55.000 0.00 0.00 39.43 5.52
82 83 0.610174 TGATAGCATGGATCTCCGCC 59.390 55.000 0.00 0.00 39.43 6.13
83 84 2.277969 CATGATAGCATGGATCTCCGC 58.722 52.381 13.24 0.00 46.45 5.54
93 94 2.619849 GCCATACCCTGCATGATAGCAT 60.620 50.000 0.00 0.00 44.68 3.79
94 95 1.271543 GCCATACCCTGCATGATAGCA 60.272 52.381 0.00 0.00 43.35 3.49
95 96 1.004044 AGCCATACCCTGCATGATAGC 59.996 52.381 0.00 0.00 0.00 2.97
96 97 3.430042 AAGCCATACCCTGCATGATAG 57.570 47.619 0.00 0.00 0.00 2.08
97 98 3.489355 CAAAGCCATACCCTGCATGATA 58.511 45.455 0.00 0.00 0.00 2.15
98 99 2.313317 CAAAGCCATACCCTGCATGAT 58.687 47.619 0.00 0.00 0.00 2.45
99 100 1.685803 CCAAAGCCATACCCTGCATGA 60.686 52.381 0.00 0.00 0.00 3.07
100 101 0.748450 CCAAAGCCATACCCTGCATG 59.252 55.000 0.00 0.00 0.00 4.06
101 102 1.044790 GCCAAAGCCATACCCTGCAT 61.045 55.000 0.00 0.00 0.00 3.96
102 103 1.682005 GCCAAAGCCATACCCTGCA 60.682 57.895 0.00 0.00 0.00 4.41
103 104 3.210302 GCCAAAGCCATACCCTGC 58.790 61.111 0.00 0.00 0.00 4.85
117 118 2.166829 GTATTGTGTGTTGGATGGCCA 58.833 47.619 8.56 8.56 44.17 5.36
118 119 2.446435 AGTATTGTGTGTTGGATGGCC 58.554 47.619 0.00 0.00 0.00 5.36
119 120 3.119495 GGAAGTATTGTGTGTTGGATGGC 60.119 47.826 0.00 0.00 0.00 4.40
120 121 3.126858 CGGAAGTATTGTGTGTTGGATGG 59.873 47.826 0.00 0.00 0.00 3.51
121 122 3.126858 CCGGAAGTATTGTGTGTTGGATG 59.873 47.826 0.00 0.00 0.00 3.51
122 123 3.244770 ACCGGAAGTATTGTGTGTTGGAT 60.245 43.478 9.46 0.00 0.00 3.41
123 124 2.105134 ACCGGAAGTATTGTGTGTTGGA 59.895 45.455 9.46 0.00 0.00 3.53
124 125 2.225491 CACCGGAAGTATTGTGTGTTGG 59.775 50.000 9.46 0.00 0.00 3.77
125 126 2.225491 CCACCGGAAGTATTGTGTGTTG 59.775 50.000 9.46 0.00 0.00 3.33
126 127 2.158726 ACCACCGGAAGTATTGTGTGTT 60.159 45.455 9.46 0.00 0.00 3.32
127 128 1.418637 ACCACCGGAAGTATTGTGTGT 59.581 47.619 9.46 0.00 0.00 3.72
128 129 2.178912 ACCACCGGAAGTATTGTGTG 57.821 50.000 9.46 0.00 0.00 3.82
129 130 2.158726 ACAACCACCGGAAGTATTGTGT 60.159 45.455 9.46 3.10 36.24 3.72
130 131 2.225491 CACAACCACCGGAAGTATTGTG 59.775 50.000 9.46 16.56 43.13 3.33
131 132 2.500229 CACAACCACCGGAAGTATTGT 58.500 47.619 9.46 8.46 37.42 2.71
132 133 1.199097 GCACAACCACCGGAAGTATTG 59.801 52.381 9.46 7.78 32.46 1.90
133 134 1.202830 TGCACAACCACCGGAAGTATT 60.203 47.619 9.46 0.00 0.00 1.89
134 135 0.398696 TGCACAACCACCGGAAGTAT 59.601 50.000 9.46 0.00 0.00 2.12
135 136 0.250124 CTGCACAACCACCGGAAGTA 60.250 55.000 9.46 0.00 0.00 2.24
136 137 1.525995 CTGCACAACCACCGGAAGT 60.526 57.895 9.46 0.70 0.00 3.01
137 138 1.507141 GACTGCACAACCACCGGAAG 61.507 60.000 9.46 0.00 0.00 3.46
138 139 1.525077 GACTGCACAACCACCGGAA 60.525 57.895 9.46 0.00 0.00 4.30
139 140 2.110213 GACTGCACAACCACCGGA 59.890 61.111 9.46 0.00 0.00 5.14
140 141 2.978010 GGACTGCACAACCACCGG 60.978 66.667 0.00 0.00 0.00 5.28
141 142 3.345808 CGGACTGCACAACCACCG 61.346 66.667 0.00 0.00 34.77 4.94
142 143 2.110213 TCGGACTGCACAACCACC 59.890 61.111 0.00 0.00 0.00 4.61
143 144 1.222115 GAGTCGGACTGCACAACCAC 61.222 60.000 16.72 0.00 0.00 4.16
144 145 1.069090 GAGTCGGACTGCACAACCA 59.931 57.895 16.72 0.00 0.00 3.67
145 146 2.022129 CGAGTCGGACTGCACAACC 61.022 63.158 16.72 0.00 0.00 3.77
146 147 3.538841 CGAGTCGGACTGCACAAC 58.461 61.111 16.72 0.00 0.00 3.32
164 165 0.674895 AACACTCAGAGGCCAATCGC 60.675 55.000 5.01 0.00 0.00 4.58
165 166 1.081892 CAACACTCAGAGGCCAATCG 58.918 55.000 5.01 0.00 0.00 3.34
166 167 1.457346 CCAACACTCAGAGGCCAATC 58.543 55.000 5.01 0.00 0.00 2.67
167 168 0.610232 GCCAACACTCAGAGGCCAAT 60.610 55.000 5.01 0.00 41.25 3.16
168 169 1.228245 GCCAACACTCAGAGGCCAA 60.228 57.895 5.01 0.00 41.25 4.52
169 170 2.431683 GCCAACACTCAGAGGCCA 59.568 61.111 5.01 0.00 41.25 5.36
172 173 1.895798 TCAGTAGCCAACACTCAGAGG 59.104 52.381 1.53 0.00 0.00 3.69
173 174 3.519579 CATCAGTAGCCAACACTCAGAG 58.480 50.000 0.00 0.00 0.00 3.35
174 175 2.234661 CCATCAGTAGCCAACACTCAGA 59.765 50.000 0.00 0.00 0.00 3.27
175 176 2.625737 CCATCAGTAGCCAACACTCAG 58.374 52.381 0.00 0.00 0.00 3.35
176 177 1.339055 GCCATCAGTAGCCAACACTCA 60.339 52.381 0.00 0.00 0.00 3.41
177 178 1.373570 GCCATCAGTAGCCAACACTC 58.626 55.000 0.00 0.00 0.00 3.51
178 179 3.558674 GCCATCAGTAGCCAACACT 57.441 52.632 0.00 0.00 0.00 3.55
185 186 1.907739 TGGTGAGGCCATCAGTAGC 59.092 57.895 5.01 0.00 43.61 3.58
194 195 2.057137 TATGCTGATTTGGTGAGGCC 57.943 50.000 0.00 0.00 37.90 5.19
195 196 2.295349 CCATATGCTGATTTGGTGAGGC 59.705 50.000 0.00 0.00 0.00 4.70
196 197 2.889045 CCCATATGCTGATTTGGTGAGG 59.111 50.000 0.00 0.00 30.63 3.86
197 198 2.295349 GCCCATATGCTGATTTGGTGAG 59.705 50.000 0.00 0.00 30.63 3.51
198 199 2.309613 GCCCATATGCTGATTTGGTGA 58.690 47.619 0.00 0.00 30.63 4.02
199 200 2.033372 TGCCCATATGCTGATTTGGTG 58.967 47.619 0.00 0.00 30.63 4.17
200 201 2.457813 TGCCCATATGCTGATTTGGT 57.542 45.000 0.00 0.00 30.63 3.67
201 202 3.056821 CAGATGCCCATATGCTGATTTGG 60.057 47.826 0.00 0.00 32.02 3.28
202 203 3.824443 TCAGATGCCCATATGCTGATTTG 59.176 43.478 6.03 0.18 31.24 2.32
203 204 4.108501 TCAGATGCCCATATGCTGATTT 57.891 40.909 6.03 0.00 31.24 2.17
204 205 3.801307 TCAGATGCCCATATGCTGATT 57.199 42.857 6.03 0.00 31.24 2.57
205 206 3.371702 GGATCAGATGCCCATATGCTGAT 60.372 47.826 17.55 17.55 45.90 2.90
206 207 2.026542 GGATCAGATGCCCATATGCTGA 60.027 50.000 11.01 11.01 39.61 4.26
207 208 2.366533 GGATCAGATGCCCATATGCTG 58.633 52.381 0.00 0.00 30.58 4.41
208 209 1.284198 GGGATCAGATGCCCATATGCT 59.716 52.381 9.90 0.00 44.07 3.79
209 210 1.760192 GGGATCAGATGCCCATATGC 58.240 55.000 9.90 0.00 44.07 3.14
210 211 1.407851 CCGGGATCAGATGCCCATATG 60.408 57.143 15.08 0.90 44.94 1.78
211 212 0.914644 CCGGGATCAGATGCCCATAT 59.085 55.000 15.08 0.00 44.94 1.78
212 213 0.178906 TCCGGGATCAGATGCCCATA 60.179 55.000 15.08 0.00 44.94 2.74
213 214 1.462043 TCCGGGATCAGATGCCCAT 60.462 57.895 15.08 0.00 44.94 4.00
214 215 2.040988 TCCGGGATCAGATGCCCA 60.041 61.111 15.08 0.00 44.94 5.36
215 216 1.197430 ATCTCCGGGATCAGATGCCC 61.197 60.000 15.08 10.82 37.50 5.36
216 217 0.689623 AATCTCCGGGATCAGATGCC 59.310 55.000 11.00 11.00 37.42 4.40
217 218 3.685139 TTAATCTCCGGGATCAGATGC 57.315 47.619 0.00 0.00 32.76 3.91
218 219 5.011533 ACTCTTTAATCTCCGGGATCAGATG 59.988 44.000 0.00 0.00 32.76 2.90
219 220 5.151454 ACTCTTTAATCTCCGGGATCAGAT 58.849 41.667 0.00 0.00 32.76 2.90
220 221 4.547671 ACTCTTTAATCTCCGGGATCAGA 58.452 43.478 0.00 0.00 32.76 3.27
221 222 4.946478 ACTCTTTAATCTCCGGGATCAG 57.054 45.455 0.00 0.00 32.76 2.90
222 223 4.714802 TCAACTCTTTAATCTCCGGGATCA 59.285 41.667 0.00 0.00 32.76 2.92
223 224 5.277857 TCAACTCTTTAATCTCCGGGATC 57.722 43.478 0.00 0.00 32.76 3.36
224 225 5.366768 TCATCAACTCTTTAATCTCCGGGAT 59.633 40.000 0.00 0.00 35.97 3.85
225 226 4.714802 TCATCAACTCTTTAATCTCCGGGA 59.285 41.667 0.00 0.00 0.00 5.14
226 227 5.023533 TCATCAACTCTTTAATCTCCGGG 57.976 43.478 0.00 0.00 0.00 5.73
227 228 5.525378 CCTTCATCAACTCTTTAATCTCCGG 59.475 44.000 0.00 0.00 0.00 5.14
228 229 6.341316 TCCTTCATCAACTCTTTAATCTCCG 58.659 40.000 0.00 0.00 0.00 4.63
229 230 8.567285 TTTCCTTCATCAACTCTTTAATCTCC 57.433 34.615 0.00 0.00 0.00 3.71
230 231 8.672815 CCTTTCCTTCATCAACTCTTTAATCTC 58.327 37.037 0.00 0.00 0.00 2.75
231 232 7.613411 CCCTTTCCTTCATCAACTCTTTAATCT 59.387 37.037 0.00 0.00 0.00 2.40
232 233 7.611855 TCCCTTTCCTTCATCAACTCTTTAATC 59.388 37.037 0.00 0.00 0.00 1.75
233 234 7.470192 TCCCTTTCCTTCATCAACTCTTTAAT 58.530 34.615 0.00 0.00 0.00 1.40
234 235 6.848069 TCCCTTTCCTTCATCAACTCTTTAA 58.152 36.000 0.00 0.00 0.00 1.52
235 236 6.044404 ACTCCCTTTCCTTCATCAACTCTTTA 59.956 38.462 0.00 0.00 0.00 1.85
236 237 5.163045 ACTCCCTTTCCTTCATCAACTCTTT 60.163 40.000 0.00 0.00 0.00 2.52
237 238 4.352298 ACTCCCTTTCCTTCATCAACTCTT 59.648 41.667 0.00 0.00 0.00 2.85
238 239 3.913163 ACTCCCTTTCCTTCATCAACTCT 59.087 43.478 0.00 0.00 0.00 3.24
239 240 4.293662 ACTCCCTTTCCTTCATCAACTC 57.706 45.455 0.00 0.00 0.00 3.01
240 241 4.731313 AACTCCCTTTCCTTCATCAACT 57.269 40.909 0.00 0.00 0.00 3.16
241 242 5.791336 AAAACTCCCTTTCCTTCATCAAC 57.209 39.130 0.00 0.00 0.00 3.18
242 243 6.266786 GGTAAAAACTCCCTTTCCTTCATCAA 59.733 38.462 0.00 0.00 0.00 2.57
243 244 5.773176 GGTAAAAACTCCCTTTCCTTCATCA 59.227 40.000 0.00 0.00 0.00 3.07
244 245 6.010850 AGGTAAAAACTCCCTTTCCTTCATC 58.989 40.000 0.00 0.00 0.00 2.92
245 246 5.965486 AGGTAAAAACTCCCTTTCCTTCAT 58.035 37.500 0.00 0.00 0.00 2.57
246 247 5.103855 TGAGGTAAAAACTCCCTTTCCTTCA 60.104 40.000 0.00 0.00 34.06 3.02
247 248 5.382616 TGAGGTAAAAACTCCCTTTCCTTC 58.617 41.667 0.00 0.00 34.06 3.46
248 249 5.133830 TCTGAGGTAAAAACTCCCTTTCCTT 59.866 40.000 0.00 0.00 34.06 3.36
249 250 4.663592 TCTGAGGTAAAAACTCCCTTTCCT 59.336 41.667 0.00 0.00 34.06 3.36
250 251 4.981812 TCTGAGGTAAAAACTCCCTTTCC 58.018 43.478 0.00 0.00 34.06 3.13
251 252 6.954487 TTTCTGAGGTAAAAACTCCCTTTC 57.046 37.500 0.00 0.00 34.06 2.62
252 253 7.914427 AATTTCTGAGGTAAAAACTCCCTTT 57.086 32.000 0.00 0.00 34.06 3.11
253 254 8.002459 TGTAATTTCTGAGGTAAAAACTCCCTT 58.998 33.333 0.00 0.00 34.06 3.95
254 255 7.523415 TGTAATTTCTGAGGTAAAAACTCCCT 58.477 34.615 0.00 0.00 34.06 4.20
255 256 7.754851 TGTAATTTCTGAGGTAAAAACTCCC 57.245 36.000 0.00 0.00 34.06 4.30
256 257 9.626045 CAATGTAATTTCTGAGGTAAAAACTCC 57.374 33.333 0.00 0.00 31.22 3.85
263 264 9.653287 CTGACTACAATGTAATTTCTGAGGTAA 57.347 33.333 0.00 0.00 31.22 2.85
264 265 9.031537 TCTGACTACAATGTAATTTCTGAGGTA 57.968 33.333 0.00 0.00 31.22 3.08
265 266 7.907389 TCTGACTACAATGTAATTTCTGAGGT 58.093 34.615 0.00 0.00 31.22 3.85
266 267 8.777865 TTCTGACTACAATGTAATTTCTGAGG 57.222 34.615 0.00 0.00 31.22 3.86
277 278 9.682465 TCTACTACACTATTCTGACTACAATGT 57.318 33.333 0.00 0.00 0.00 2.71
281 282 9.121658 CCAATCTACTACACTATTCTGACTACA 57.878 37.037 0.00 0.00 0.00 2.74
282 283 9.122779 ACCAATCTACTACACTATTCTGACTAC 57.877 37.037 0.00 0.00 0.00 2.73
283 284 9.696572 AACCAATCTACTACACTATTCTGACTA 57.303 33.333 0.00 0.00 0.00 2.59
284 285 8.470805 CAACCAATCTACTACACTATTCTGACT 58.529 37.037 0.00 0.00 0.00 3.41
285 286 7.707035 CCAACCAATCTACTACACTATTCTGAC 59.293 40.741 0.00 0.00 0.00 3.51
286 287 7.632898 GCCAACCAATCTACTACACTATTCTGA 60.633 40.741 0.00 0.00 0.00 3.27
287 288 6.480320 GCCAACCAATCTACTACACTATTCTG 59.520 42.308 0.00 0.00 0.00 3.02
288 289 6.156256 TGCCAACCAATCTACTACACTATTCT 59.844 38.462 0.00 0.00 0.00 2.40
289 290 6.346096 TGCCAACCAATCTACTACACTATTC 58.654 40.000 0.00 0.00 0.00 1.75
290 291 6.308015 TGCCAACCAATCTACTACACTATT 57.692 37.500 0.00 0.00 0.00 1.73
291 292 5.950544 TGCCAACCAATCTACTACACTAT 57.049 39.130 0.00 0.00 0.00 2.12
292 293 5.748670 TTGCCAACCAATCTACTACACTA 57.251 39.130 0.00 0.00 0.00 2.74
293 294 4.634012 TTGCCAACCAATCTACTACACT 57.366 40.909 0.00 0.00 0.00 3.55
294 295 7.095187 GCTATATTGCCAACCAATCTACTACAC 60.095 40.741 0.00 0.00 42.99 2.90
295 296 6.934645 GCTATATTGCCAACCAATCTACTACA 59.065 38.462 0.00 0.00 42.99 2.74
296 297 7.365840 GCTATATTGCCAACCAATCTACTAC 57.634 40.000 0.00 0.00 42.99 2.73
311 312 1.901650 GCTCGGTGCGGCTATATTGC 61.902 60.000 0.00 0.00 0.00 3.56
312 313 2.153913 GCTCGGTGCGGCTATATTG 58.846 57.895 0.00 0.00 0.00 1.90
313 314 4.675404 GCTCGGTGCGGCTATATT 57.325 55.556 0.00 0.00 0.00 1.28
327 328 3.414700 CACAGCCGTGGTTCGCTC 61.415 66.667 0.00 0.00 39.64 5.03
336 337 2.203153 GTGAACCCACACAGCCGT 60.203 61.111 0.00 0.00 42.72 5.68
337 338 1.961277 GAGTGAACCCACACAGCCG 60.961 63.158 0.00 0.00 45.54 5.52
338 339 1.961277 CGAGTGAACCCACACAGCC 60.961 63.158 0.00 0.00 45.54 4.85
339 340 1.961277 CCGAGTGAACCCACACAGC 60.961 63.158 0.00 0.00 45.54 4.40
340 341 0.179056 AACCGAGTGAACCCACACAG 60.179 55.000 0.00 0.00 45.54 3.66
341 342 0.179067 GAACCGAGTGAACCCACACA 60.179 55.000 0.00 0.00 45.54 3.72
342 343 0.883370 GGAACCGAGTGAACCCACAC 60.883 60.000 0.00 0.00 45.54 3.82
343 344 1.338890 TGGAACCGAGTGAACCCACA 61.339 55.000 0.00 0.00 45.54 4.17
344 345 0.883370 GTGGAACCGAGTGAACCCAC 60.883 60.000 0.00 0.00 43.50 4.61
345 346 1.448497 GTGGAACCGAGTGAACCCA 59.552 57.895 0.00 0.00 0.00 4.51
346 347 4.373771 GTGGAACCGAGTGAACCC 57.626 61.111 0.00 0.00 0.00 4.11
357 358 7.229506 CCAAAGATCCTCAATATAAGGTGGAAC 59.770 40.741 4.45 1.47 35.29 3.62
358 359 7.290061 CCAAAGATCCTCAATATAAGGTGGAA 58.710 38.462 4.45 0.00 35.29 3.53
359 360 6.691491 GCCAAAGATCCTCAATATAAGGTGGA 60.691 42.308 11.81 5.51 35.29 4.02
360 361 5.474876 GCCAAAGATCCTCAATATAAGGTGG 59.525 44.000 4.45 5.54 35.29 4.61
361 362 5.474876 GGCCAAAGATCCTCAATATAAGGTG 59.525 44.000 0.00 0.00 35.29 4.00
362 363 5.373854 AGGCCAAAGATCCTCAATATAAGGT 59.626 40.000 5.01 0.00 35.29 3.50
363 364 5.885465 AGGCCAAAGATCCTCAATATAAGG 58.115 41.667 5.01 0.00 35.05 2.69
373 374 1.799933 ATCGAGAGGCCAAAGATCCT 58.200 50.000 5.01 0.00 34.90 3.24
374 375 2.216898 CAATCGAGAGGCCAAAGATCC 58.783 52.381 5.01 0.00 0.00 3.36
375 376 2.911484 ACAATCGAGAGGCCAAAGATC 58.089 47.619 5.01 0.00 0.00 2.75
376 377 4.192317 GTTACAATCGAGAGGCCAAAGAT 58.808 43.478 5.01 0.82 0.00 2.40
377 378 3.007506 TGTTACAATCGAGAGGCCAAAGA 59.992 43.478 5.01 0.00 0.00 2.52
378 379 3.125316 GTGTTACAATCGAGAGGCCAAAG 59.875 47.826 5.01 0.00 0.00 2.77
379 380 3.071479 GTGTTACAATCGAGAGGCCAAA 58.929 45.455 5.01 0.00 0.00 3.28
380 381 2.301870 AGTGTTACAATCGAGAGGCCAA 59.698 45.455 5.01 0.00 0.00 4.52
381 382 1.899814 AGTGTTACAATCGAGAGGCCA 59.100 47.619 5.01 0.00 0.00 5.36
382 383 2.271800 CAGTGTTACAATCGAGAGGCC 58.728 52.381 0.00 0.00 0.00 5.19
383 384 2.668457 CACAGTGTTACAATCGAGAGGC 59.332 50.000 0.00 0.00 0.00 4.70
384 385 3.921021 GTCACAGTGTTACAATCGAGAGG 59.079 47.826 2.65 0.00 0.00 3.69
385 386 4.546570 TGTCACAGTGTTACAATCGAGAG 58.453 43.478 7.83 0.00 0.00 3.20
386 387 4.577834 TGTCACAGTGTTACAATCGAGA 57.422 40.909 7.83 0.00 0.00 4.04
387 388 5.611919 CATTGTCACAGTGTTACAATCGAG 58.388 41.667 25.81 15.27 37.99 4.04
388 389 4.084066 GCATTGTCACAGTGTTACAATCGA 60.084 41.667 25.81 7.36 37.99 3.59
389 390 4.151070 GCATTGTCACAGTGTTACAATCG 58.849 43.478 25.81 21.59 37.99 3.34
390 391 5.107109 TGCATTGTCACAGTGTTACAATC 57.893 39.130 25.81 20.81 37.99 2.67
391 392 5.512753 TTGCATTGTCACAGTGTTACAAT 57.487 34.783 23.87 23.87 39.82 2.71
392 393 4.972514 TTGCATTGTCACAGTGTTACAA 57.027 36.364 21.82 21.82 34.79 2.41
393 394 6.625873 TTATTGCATTGTCACAGTGTTACA 57.374 33.333 6.18 6.18 0.00 2.41
394 395 7.647715 AGTTTTATTGCATTGTCACAGTGTTAC 59.352 33.333 1.83 0.40 0.00 2.50
395 396 7.711846 AGTTTTATTGCATTGTCACAGTGTTA 58.288 30.769 1.83 0.00 0.00 2.41
396 397 6.572519 AGTTTTATTGCATTGTCACAGTGTT 58.427 32.000 1.83 0.00 0.00 3.32
397 398 6.147864 AGTTTTATTGCATTGTCACAGTGT 57.852 33.333 1.83 0.00 0.00 3.55
398 399 5.630680 GGAGTTTTATTGCATTGTCACAGTG 59.369 40.000 0.00 0.00 0.00 3.66
399 400 5.278957 GGGAGTTTTATTGCATTGTCACAGT 60.279 40.000 0.00 0.00 0.00 3.55
400 401 5.047802 AGGGAGTTTTATTGCATTGTCACAG 60.048 40.000 0.00 0.00 0.00 3.66
401 402 4.832266 AGGGAGTTTTATTGCATTGTCACA 59.168 37.500 0.00 0.00 0.00 3.58
402 403 5.391312 AGGGAGTTTTATTGCATTGTCAC 57.609 39.130 0.00 0.00 0.00 3.67
403 404 5.774690 AGAAGGGAGTTTTATTGCATTGTCA 59.225 36.000 0.00 0.00 0.00 3.58
404 405 6.272822 AGAAGGGAGTTTTATTGCATTGTC 57.727 37.500 0.00 0.00 0.00 3.18
405 406 6.152831 GGTAGAAGGGAGTTTTATTGCATTGT 59.847 38.462 0.00 0.00 0.00 2.71
406 407 6.405842 GGGTAGAAGGGAGTTTTATTGCATTG 60.406 42.308 0.00 0.00 0.00 2.82
407 408 5.656859 GGGTAGAAGGGAGTTTTATTGCATT 59.343 40.000 0.00 0.00 0.00 3.56
408 409 5.201243 GGGTAGAAGGGAGTTTTATTGCAT 58.799 41.667 0.00 0.00 0.00 3.96
409 410 4.569015 GGGGTAGAAGGGAGTTTTATTGCA 60.569 45.833 0.00 0.00 0.00 4.08
410 411 3.952323 GGGGTAGAAGGGAGTTTTATTGC 59.048 47.826 0.00 0.00 0.00 3.56
411 412 4.196971 CGGGGTAGAAGGGAGTTTTATTG 58.803 47.826 0.00 0.00 0.00 1.90
412 413 3.371273 GCGGGGTAGAAGGGAGTTTTATT 60.371 47.826 0.00 0.00 0.00 1.40
413 414 2.172082 GCGGGGTAGAAGGGAGTTTTAT 59.828 50.000 0.00 0.00 0.00 1.40
414 415 1.556451 GCGGGGTAGAAGGGAGTTTTA 59.444 52.381 0.00 0.00 0.00 1.52
415 416 0.327259 GCGGGGTAGAAGGGAGTTTT 59.673 55.000 0.00 0.00 0.00 2.43
416 417 0.838987 TGCGGGGTAGAAGGGAGTTT 60.839 55.000 0.00 0.00 0.00 2.66
417 418 0.838987 TTGCGGGGTAGAAGGGAGTT 60.839 55.000 0.00 0.00 0.00 3.01
418 419 0.838987 TTTGCGGGGTAGAAGGGAGT 60.839 55.000 0.00 0.00 0.00 3.85
419 420 0.326927 TTTTGCGGGGTAGAAGGGAG 59.673 55.000 0.00 0.00 0.00 4.30
420 421 0.996583 ATTTTGCGGGGTAGAAGGGA 59.003 50.000 0.00 0.00 0.00 4.20
421 422 2.721425 TATTTTGCGGGGTAGAAGGG 57.279 50.000 0.00 0.00 0.00 3.95
422 423 6.702716 TTATTTATTTTGCGGGGTAGAAGG 57.297 37.500 0.00 0.00 0.00 3.46
425 426 9.411189 ACTTATTTATTTATTTTGCGGGGTAGA 57.589 29.630 0.00 0.00 0.00 2.59
426 427 9.458374 CACTTATTTATTTATTTTGCGGGGTAG 57.542 33.333 0.00 0.00 0.00 3.18
427 428 7.921745 GCACTTATTTATTTATTTTGCGGGGTA 59.078 33.333 0.00 0.00 0.00 3.69
428 429 6.759356 GCACTTATTTATTTATTTTGCGGGGT 59.241 34.615 0.00 0.00 0.00 4.95
429 430 6.983890 AGCACTTATTTATTTATTTTGCGGGG 59.016 34.615 0.00 0.00 32.67 5.73
430 431 8.419076 AAGCACTTATTTATTTATTTTGCGGG 57.581 30.769 0.00 0.00 32.67 6.13
444 445 8.996024 AACACTTGTTTTGTAAGCACTTATTT 57.004 26.923 0.00 0.00 33.93 1.40
447 448 7.024768 GTGAACACTTGTTTTGTAAGCACTTA 58.975 34.615 0.00 0.00 38.56 2.24
461 462 9.959721 AGGATTATGTATTTAGTGAACACTTGT 57.040 29.630 12.66 2.96 42.54 3.16
516 518 3.615224 GGTAACCCGTGATTTACCTGA 57.385 47.619 3.70 0.00 42.76 3.86
535 537 8.311836 TGCCGAGGAGTAAAATATTCTAATAGG 58.688 37.037 0.00 0.00 0.00 2.57
538 540 9.003658 CATTGCCGAGGAGTAAAATATTCTAAT 57.996 33.333 0.00 0.00 0.00 1.73
539 541 8.208224 TCATTGCCGAGGAGTAAAATATTCTAA 58.792 33.333 0.00 0.00 0.00 2.10
540 542 7.732025 TCATTGCCGAGGAGTAAAATATTCTA 58.268 34.615 0.00 0.00 0.00 2.10
541 543 6.591935 TCATTGCCGAGGAGTAAAATATTCT 58.408 36.000 0.00 0.00 0.00 2.40
542 544 6.861065 TCATTGCCGAGGAGTAAAATATTC 57.139 37.500 0.00 0.00 0.00 1.75
543 545 7.639113 TTTCATTGCCGAGGAGTAAAATATT 57.361 32.000 0.00 0.00 0.00 1.28
544 546 7.502226 TGATTTCATTGCCGAGGAGTAAAATAT 59.498 33.333 0.00 0.00 0.00 1.28
545 547 6.826231 TGATTTCATTGCCGAGGAGTAAAATA 59.174 34.615 0.00 0.00 0.00 1.40
546 548 5.652014 TGATTTCATTGCCGAGGAGTAAAAT 59.348 36.000 0.00 0.00 0.00 1.82
556 558 1.802069 TCACGTGATTTCATTGCCGA 58.198 45.000 15.76 0.00 0.00 5.54
595 597 4.751098 TCTGCATTGGAAAATCTTTGCAAC 59.249 37.500 0.00 0.00 39.36 4.17
597 599 4.603989 TCTGCATTGGAAAATCTTTGCA 57.396 36.364 0.00 0.00 37.73 4.08
601 603 5.163683 CGAGACATCTGCATTGGAAAATCTT 60.164 40.000 0.00 0.00 0.00 2.40
610 612 0.027716 GCTGCGAGACATCTGCATTG 59.972 55.000 6.51 0.00 35.48 2.82
612 614 0.107800 AAGCTGCGAGACATCTGCAT 60.108 50.000 0.00 0.00 35.48 3.96
621 623 2.729882 GTCTTTACGAAAAGCTGCGAGA 59.270 45.455 10.35 1.48 41.64 4.04
652 658 9.965902 ACCATCTTTGTCTTTAAGATTGTCTAT 57.034 29.630 0.00 0.00 39.65 1.98
670 676 1.795170 GCACACGGCACACCATCTTT 61.795 55.000 0.00 0.00 43.97 2.52
671 677 2.260869 GCACACGGCACACCATCTT 61.261 57.895 0.00 0.00 43.97 2.40
672 678 2.669569 GCACACGGCACACCATCT 60.670 61.111 0.00 0.00 43.97 2.90
673 679 4.088762 CGCACACGGCACACCATC 62.089 66.667 0.00 0.00 45.17 3.51
686 695 3.864686 CACTACGCATGGCCGCAC 61.865 66.667 0.00 0.00 0.00 5.34
720 729 2.095567 CCAGTCTCTTGCAAACATTCCG 60.096 50.000 0.00 0.00 0.00 4.30
746 755 2.264813 CTACGACCCAATACCACAACG 58.735 52.381 0.00 0.00 0.00 4.10
759 769 1.431036 GGCTACGACCACTACGACC 59.569 63.158 0.00 0.00 34.70 4.79
788 798 0.827925 TCACTTCGTGGCTCCTCACT 60.828 55.000 0.00 0.00 35.63 3.41
810 841 2.292521 TGGGCTAGAGTGGAATCTGAGT 60.293 50.000 0.00 0.00 0.00 3.41
811 842 2.392662 TGGGCTAGAGTGGAATCTGAG 58.607 52.381 0.00 0.00 0.00 3.35
812 843 2.550277 TGGGCTAGAGTGGAATCTGA 57.450 50.000 0.00 0.00 0.00 3.27
813 844 2.702478 TGATGGGCTAGAGTGGAATCTG 59.298 50.000 0.00 0.00 0.00 2.90
814 845 2.703007 GTGATGGGCTAGAGTGGAATCT 59.297 50.000 0.00 0.00 0.00 2.40
815 846 2.435805 TGTGATGGGCTAGAGTGGAATC 59.564 50.000 0.00 0.00 0.00 2.52
816 847 2.171448 GTGTGATGGGCTAGAGTGGAAT 59.829 50.000 0.00 0.00 0.00 3.01
817 848 1.555075 GTGTGATGGGCTAGAGTGGAA 59.445 52.381 0.00 0.00 0.00 3.53
872 903 3.628646 AAGAGGGATGGTGCGTGCC 62.629 63.158 0.00 0.00 0.00 5.01
878 909 1.753073 GGAATGCAAAGAGGGATGGTG 59.247 52.381 0.00 0.00 0.00 4.17
1383 1414 1.990060 CCGGTGGATGGACTGGACT 60.990 63.158 0.00 0.00 44.26 3.85
1473 1504 4.415332 GAGGCAACGGTCTCGCGA 62.415 66.667 9.26 9.26 46.39 5.87
1668 1699 1.192146 CCTCCGAAGACTTCCACCCA 61.192 60.000 9.63 0.00 0.00 4.51
1845 1876 5.050091 GCCAATCAAACTCGTATAGGTGATG 60.050 44.000 1.78 1.58 35.42 3.07
1881 1912 1.529010 CTTGTCAGGCTGGCCAACA 60.529 57.895 17.80 9.71 38.92 3.33
1989 2020 0.674895 ACGCATCACCAAGCCTCTTC 60.675 55.000 0.00 0.00 0.00 2.87
2018 2049 1.490693 CCTCGATGCCATTTCGTCCG 61.491 60.000 0.00 0.00 37.82 4.79
2031 2062 2.502492 CGGCATCAGTCCCCTCGAT 61.502 63.158 0.00 0.00 0.00 3.59
2034 2065 0.533755 CATTCGGCATCAGTCCCCTC 60.534 60.000 0.00 0.00 0.00 4.30
2055 2086 5.583457 CCGGAAGAAAAGGTTATATGTCGTT 59.417 40.000 0.00 0.00 0.00 3.85
2181 2212 2.703536 ACCATGCCGATGACATAACCTA 59.296 45.455 0.00 0.00 0.00 3.08
2232 2263 1.771565 ACCCGTTCTCGACCATATCA 58.228 50.000 0.00 0.00 39.71 2.15
2301 2332 2.364317 TCCTCCAGCTTCCCCTCG 60.364 66.667 0.00 0.00 0.00 4.63
2691 2725 7.209471 TGAAAGCAAAACGACTAACCAATAT 57.791 32.000 0.00 0.00 0.00 1.28
2876 3072 6.994496 AGATTGGACAGTGGTGTAATATCATG 59.006 38.462 0.00 0.00 36.88 3.07
2880 3076 6.384015 TGAGAGATTGGACAGTGGTGTAATAT 59.616 38.462 0.00 0.00 36.88 1.28
2945 3167 3.181520 CCAAACTTCCAATTCTACGCTCG 60.182 47.826 0.00 0.00 0.00 5.03
2948 3170 4.215613 AGTTCCAAACTTCCAATTCTACGC 59.784 41.667 0.00 0.00 39.04 4.42
3057 3279 0.532115 GCGGGATGACAAATTTGGCT 59.468 50.000 24.13 10.32 37.03 4.75
3069 3291 3.457625 CTCCCAGCAGAGCGGGATG 62.458 68.421 17.45 10.68 46.43 3.51
3070 3292 3.160047 CTCCCAGCAGAGCGGGAT 61.160 66.667 17.45 0.00 46.43 3.85
3155 3379 4.767409 GTGTTTGCTTTCCTTCCCTCTAAT 59.233 41.667 0.00 0.00 0.00 1.73
3159 3383 2.587522 AGTGTTTGCTTTCCTTCCCTC 58.412 47.619 0.00 0.00 0.00 4.30
3181 3405 6.368791 CCAAAGTGATAAATCGAGAGACAACA 59.631 38.462 0.00 0.00 46.97 3.33
3182 3406 6.590292 TCCAAAGTGATAAATCGAGAGACAAC 59.410 38.462 0.00 0.00 46.97 3.32
3200 3425 2.508526 GTTCATGAGCACCTCCAAAGT 58.491 47.619 4.47 0.00 0.00 2.66
3202 3427 1.425066 AGGTTCATGAGCACCTCCAAA 59.575 47.619 12.55 0.00 39.37 3.28
3205 3430 0.326264 ACAGGTTCATGAGCACCTCC 59.674 55.000 15.01 4.15 41.86 4.30
3206 3431 2.079925 GAACAGGTTCATGAGCACCTC 58.920 52.381 15.01 2.98 41.86 3.85
3207 3432 1.701847 AGAACAGGTTCATGAGCACCT 59.298 47.619 12.55 12.55 44.88 4.00
3208 3433 1.808945 CAGAACAGGTTCATGAGCACC 59.191 52.381 11.93 10.05 41.84 5.01
3263 3517 8.336801 AGTTAATACTTCCATTTTCAGGTCAC 57.663 34.615 0.00 0.00 0.00 3.67
3296 3550 1.414181 AGTGCGCTACTGGCTATTCAT 59.586 47.619 9.73 0.00 38.49 2.57
3343 3597 4.516698 CCAATAGCCAAGCTAACCATGTAG 59.483 45.833 0.00 0.00 44.62 2.74
3388 3642 8.716646 AAATCCATCGAAAATATTGGGAAAAC 57.283 30.769 0.83 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.