Multiple sequence alignment - TraesCS4B01G253800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G253800 chr4B 100.000 4891 0 0 1 4891 519381121 519376231 0.000000e+00 9033.0
1 TraesCS4B01G253800 chr4B 89.001 791 47 17 1 771 105826675 105827445 0.000000e+00 942.0
2 TraesCS4B01G253800 chr4B 94.163 257 7 3 522 772 519384814 519385068 7.680000e-103 385.0
3 TraesCS4B01G253800 chr4B 92.157 255 12 4 522 771 105824149 105823898 2.170000e-93 353.0
4 TraesCS4B01G253800 chr4D 93.775 3052 129 25 805 3815 422541873 422538842 0.000000e+00 4527.0
5 TraesCS4B01G253800 chr4D 91.304 276 14 5 3824 4096 422538549 422538281 7.730000e-98 368.0
6 TraesCS4B01G253800 chr4D 88.850 287 17 6 4614 4891 422536635 422536355 6.060000e-89 339.0
7 TraesCS4B01G253800 chr4D 89.286 140 10 2 4464 4603 422537167 422537033 2.340000e-38 171.0
8 TraesCS4B01G253800 chr4D 90.400 125 7 2 4262 4386 422537287 422537168 5.070000e-35 159.0
9 TraesCS4B01G253800 chr4D 85.246 122 13 3 1248 1364 82727684 82727563 2.390000e-23 121.0
10 TraesCS4B01G253800 chr4D 95.556 45 2 0 2545 2589 422540181 422540137 6.790000e-09 73.1
11 TraesCS4B01G253800 chr4A 92.429 1202 57 9 2617 3815 41943361 41944531 0.000000e+00 1685.0
12 TraesCS4B01G253800 chr4A 93.010 701 38 8 1935 2625 41936735 41937434 0.000000e+00 1013.0
13 TraesCS4B01G253800 chr4A 90.037 542 28 12 804 1330 41934773 41935303 0.000000e+00 678.0
14 TraesCS4B01G253800 chr4A 91.367 417 27 5 1505 1921 41936190 41936597 3.310000e-156 562.0
15 TraesCS4B01G253800 chr4A 89.195 435 22 15 4473 4891 41945657 41946082 2.020000e-143 520.0
16 TraesCS4B01G253800 chr4A 90.580 276 16 5 3824 4096 41944828 41945096 1.670000e-94 357.0
17 TraesCS4B01G253800 chr4A 90.400 125 7 2 4262 4386 41945538 41945657 5.070000e-35 159.0
18 TraesCS4B01G253800 chr4A 86.066 122 12 3 1248 1364 494006929 494006808 5.140000e-25 126.0
19 TraesCS4B01G253800 chr4A 91.860 86 6 1 1252 1336 84537357 84537442 8.600000e-23 119.0
20 TraesCS4B01G253800 chr2B 90.119 759 57 8 38 781 481190346 481189591 0.000000e+00 970.0
21 TraesCS4B01G253800 chr2B 88.393 784 62 15 1 771 387366972 387366205 0.000000e+00 917.0
22 TraesCS4B01G253800 chr2B 77.869 122 23 2 2116 2235 790316824 790316705 6.790000e-09 73.1
23 TraesCS4B01G253800 chr7A 88.847 789 58 14 1 771 158272332 158273108 0.000000e+00 942.0
24 TraesCS4B01G253800 chr3A 88.682 804 46 14 1 771 272845398 272844607 0.000000e+00 939.0
25 TraesCS4B01G253800 chr3A 88.317 796 50 8 1 765 748081561 748080778 0.000000e+00 915.0
26 TraesCS4B01G253800 chr3A 88.317 796 47 9 1 765 746844259 746843479 0.000000e+00 913.0
27 TraesCS4B01G253800 chr3A 92.308 39 1 2 1508 1546 523559797 523559761 2.000000e-03 54.7
28 TraesCS4B01G253800 chr1A 88.682 804 46 14 1 771 458963455 458962664 0.000000e+00 939.0
29 TraesCS4B01G253800 chr1A 97.297 37 1 0 1508 1544 155857736 155857700 4.090000e-06 63.9
30 TraesCS4B01G253800 chr1A 97.222 36 0 1 1508 1543 362624008 362623974 5.290000e-05 60.2
31 TraesCS4B01G253800 chr7B 88.295 786 59 13 1 771 43125583 43124816 0.000000e+00 911.0
32 TraesCS4B01G253800 chr7B 93.484 399 15 2 1 388 638058608 638059006 2.540000e-162 582.0
33 TraesCS4B01G253800 chr7B 92.683 328 14 4 450 771 638059004 638059327 9.590000e-127 464.0
34 TraesCS4B01G253800 chr7B 90.385 260 12 5 522 771 638057121 638056865 3.650000e-86 329.0
35 TraesCS4B01G253800 chr1B 90.353 539 40 3 1 527 314126859 314126321 0.000000e+00 697.0
36 TraesCS4B01G253800 chr1B 81.250 272 37 8 3571 3829 681690446 681690176 1.780000e-49 207.0
37 TraesCS4B01G253800 chr1B 84.667 150 19 3 2647 2794 681692074 681691927 3.950000e-31 147.0
38 TraesCS4B01G253800 chr1B 78.571 112 22 2 4118 4229 679973326 679973217 6.790000e-09 73.1
39 TraesCS4B01G253800 chr1B 83.824 68 5 4 3932 3999 680062762 680062701 5.290000e-05 60.2
40 TraesCS4B01G253800 chr1B 100.000 31 0 0 3932 3962 679980309 679980279 1.900000e-04 58.4
41 TraesCS4B01G253800 chr2D 82.249 676 76 23 3 667 609555385 609556027 1.200000e-150 544.0
42 TraesCS4B01G253800 chr2D 83.740 123 15 3 1247 1364 204493523 204493645 1.440000e-20 111.0
43 TraesCS4B01G253800 chr2D 100.000 32 0 0 1508 1539 429503244 429503213 5.290000e-05 60.2
44 TraesCS4B01G253800 chrUn 82.909 275 34 8 3566 3829 2225208 2224936 8.180000e-58 235.0
45 TraesCS4B01G253800 chr1D 82.418 273 35 8 3566 3826 488573351 488573622 4.930000e-55 226.0
46 TraesCS4B01G253800 chr1D 86.111 144 13 5 2644 2785 488571812 488571950 1.100000e-31 148.0
47 TraesCS4B01G253800 chr1D 73.231 325 60 22 3932 4252 488417673 488417974 5.210000e-15 93.5
48 TraesCS4B01G253800 chr1D 72.000 325 66 19 3932 4252 488349094 488349397 6.790000e-09 73.1
49 TraesCS4B01G253800 chr1D 85.294 68 4 5 3932 3999 488381811 488381872 1.140000e-06 65.8
50 TraesCS4B01G253800 chr1D 83.824 68 5 5 3932 3999 488411932 488411993 5.290000e-05 60.2
51 TraesCS4B01G253800 chr6B 86.290 124 11 3 1247 1365 541949927 541949805 3.970000e-26 130.0
52 TraesCS4B01G253800 chr7D 88.571 105 7 3 1252 1351 509615423 509615319 6.650000e-24 122.0
53 TraesCS4B01G253800 chr2A 83.607 122 13 5 1248 1364 278919742 278919623 1.860000e-19 108.0
54 TraesCS4B01G253800 chr6A 81.890 127 17 5 1243 1365 1987310 1987186 8.660000e-18 102.0
55 TraesCS4B01G253800 chr6A 100.000 32 0 0 1508 1539 455940323 455940354 5.290000e-05 60.2
56 TraesCS4B01G253800 chr6A 94.595 37 2 0 1503 1539 610062745 610062781 1.900000e-04 58.4
57 TraesCS4B01G253800 chr5D 84.706 85 13 0 1366 1450 213477902 213477986 8.720000e-13 86.1
58 TraesCS4B01G253800 chr5D 92.157 51 4 0 1365 1415 189263731 189263681 6.790000e-09 73.1
59 TraesCS4B01G253800 chr3B 88.000 50 3 3 1508 1554 404830442 404830491 6.840000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G253800 chr4B 519376231 519381121 4890 True 9033.000000 9033 100.000000 1 4891 1 chr4B.!!$R2 4890
1 TraesCS4B01G253800 chr4B 105826675 105827445 770 False 942.000000 942 89.001000 1 771 1 chr4B.!!$F1 770
2 TraesCS4B01G253800 chr4D 422536355 422541873 5518 True 939.516667 4527 91.528500 805 4891 6 chr4D.!!$R2 4086
3 TraesCS4B01G253800 chr4A 41934773 41937434 2661 False 751.000000 1013 91.471333 804 2625 3 chr4A.!!$F2 1821
4 TraesCS4B01G253800 chr4A 41943361 41946082 2721 False 680.250000 1685 90.651000 2617 4891 4 chr4A.!!$F3 2274
5 TraesCS4B01G253800 chr2B 481189591 481190346 755 True 970.000000 970 90.119000 38 781 1 chr2B.!!$R2 743
6 TraesCS4B01G253800 chr2B 387366205 387366972 767 True 917.000000 917 88.393000 1 771 1 chr2B.!!$R1 770
7 TraesCS4B01G253800 chr7A 158272332 158273108 776 False 942.000000 942 88.847000 1 771 1 chr7A.!!$F1 770
8 TraesCS4B01G253800 chr3A 272844607 272845398 791 True 939.000000 939 88.682000 1 771 1 chr3A.!!$R1 770
9 TraesCS4B01G253800 chr3A 748080778 748081561 783 True 915.000000 915 88.317000 1 765 1 chr3A.!!$R4 764
10 TraesCS4B01G253800 chr3A 746843479 746844259 780 True 913.000000 913 88.317000 1 765 1 chr3A.!!$R3 764
11 TraesCS4B01G253800 chr1A 458962664 458963455 791 True 939.000000 939 88.682000 1 771 1 chr1A.!!$R3 770
12 TraesCS4B01G253800 chr7B 43124816 43125583 767 True 911.000000 911 88.295000 1 771 1 chr7B.!!$R1 770
13 TraesCS4B01G253800 chr7B 638058608 638059327 719 False 523.000000 582 93.083500 1 771 2 chr7B.!!$F1 770
14 TraesCS4B01G253800 chr1B 314126321 314126859 538 True 697.000000 697 90.353000 1 527 1 chr1B.!!$R1 526
15 TraesCS4B01G253800 chr2D 609555385 609556027 642 False 544.000000 544 82.249000 3 667 1 chr2D.!!$F2 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 892 0.178068 TTCGCCCCTCATCTTAGCAC 59.822 55.0 0.0 0.0 0.00 4.40 F
1245 1367 0.345502 TTACCCCATCCCCAGCTAGT 59.654 55.0 0.0 0.0 0.00 2.57 F
1506 2391 1.536073 TTCGACCAGAGGGAGCAGTG 61.536 60.0 0.0 0.0 38.05 3.66 F
2381 3404 0.179234 TTGTTGTCCGAGCTTCACCA 59.821 50.0 0.0 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 2731 0.036010 CAGTGGCCTTCATCTCCGTT 60.036 55.0 3.32 0.00 0.00 4.44 R
2364 3387 0.798776 CATGGTGAAGCTCGGACAAC 59.201 55.0 0.00 0.00 0.00 3.32 R
2476 3500 1.459450 TTTGAGGGTCCGCTTATTGC 58.541 50.0 0.00 0.00 38.57 3.56 R
3970 5300 0.034059 GCCCAGTCATATGACCCGAG 59.966 60.0 28.26 17.24 45.85 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.071961 TGAAGCTGTTGTGTGTACATCT 57.928 40.909 0.00 0.00 36.53 2.90
120 121 5.106555 GCAGTAGCAAGAGCAAATGTTTCTA 60.107 40.000 0.00 0.00 45.49 2.10
127 128 8.834465 AGCAAGAGCAAATGTTTCTATATGTAG 58.166 33.333 0.00 0.00 45.49 2.74
137 138 9.900710 AATGTTTCTATATGTAGATCGACTCAC 57.099 33.333 7.51 0.00 36.84 3.51
138 139 7.573627 TGTTTCTATATGTAGATCGACTCACG 58.426 38.462 7.51 0.00 36.84 4.35
139 140 7.226128 TGTTTCTATATGTAGATCGACTCACGT 59.774 37.037 7.51 0.00 36.84 4.49
140 141 6.707599 TCTATATGTAGATCGACTCACGTG 57.292 41.667 9.94 9.94 36.38 4.49
141 142 6.221659 TCTATATGTAGATCGACTCACGTGT 58.778 40.000 16.51 0.00 36.38 4.49
142 143 5.752892 ATATGTAGATCGACTCACGTGTT 57.247 39.130 16.51 3.53 43.13 3.32
143 144 3.909776 TGTAGATCGACTCACGTGTTT 57.090 42.857 16.51 3.12 43.13 2.83
144 145 4.233123 TGTAGATCGACTCACGTGTTTT 57.767 40.909 16.51 0.27 43.13 2.43
145 146 4.613944 TGTAGATCGACTCACGTGTTTTT 58.386 39.130 16.51 0.00 43.13 1.94
483 553 4.796231 GTCGCGTCGTGCCTCCAT 62.796 66.667 5.77 0.00 42.08 3.41
498 568 2.202797 CATCGTGGCCTCCGAGTG 60.203 66.667 20.01 14.76 37.81 3.51
631 739 3.381045 TCACAAGACAGAACGTAAGCAG 58.619 45.455 0.00 0.00 45.62 4.24
668 776 7.923878 GTGTAAAACAATTGTTAAGTGGATGGT 59.076 33.333 23.53 1.72 37.25 3.55
684 792 2.278657 TGGTCATATTCCCACCTCCA 57.721 50.000 0.00 0.00 0.00 3.86
726 834 2.123589 TCCGATGGGCTAGGATGAAAA 58.876 47.619 0.00 0.00 0.00 2.29
771 879 3.751698 AGTTTTCACTTGATACTTCGCCC 59.248 43.478 0.00 0.00 0.00 6.13
772 880 2.396590 TTCACTTGATACTTCGCCCC 57.603 50.000 0.00 0.00 0.00 5.80
773 881 1.568504 TCACTTGATACTTCGCCCCT 58.431 50.000 0.00 0.00 0.00 4.79
774 882 1.480954 TCACTTGATACTTCGCCCCTC 59.519 52.381 0.00 0.00 0.00 4.30
775 883 1.207089 CACTTGATACTTCGCCCCTCA 59.793 52.381 0.00 0.00 0.00 3.86
776 884 2.119495 ACTTGATACTTCGCCCCTCAT 58.881 47.619 0.00 0.00 0.00 2.90
777 885 2.103263 ACTTGATACTTCGCCCCTCATC 59.897 50.000 0.00 0.00 0.00 2.92
779 887 2.398588 TGATACTTCGCCCCTCATCTT 58.601 47.619 0.00 0.00 0.00 2.40
780 888 3.572642 TGATACTTCGCCCCTCATCTTA 58.427 45.455 0.00 0.00 0.00 2.10
781 889 3.574396 TGATACTTCGCCCCTCATCTTAG 59.426 47.826 0.00 0.00 0.00 2.18
782 890 0.466124 ACTTCGCCCCTCATCTTAGC 59.534 55.000 0.00 0.00 0.00 3.09
783 891 0.465705 CTTCGCCCCTCATCTTAGCA 59.534 55.000 0.00 0.00 0.00 3.49
784 892 0.178068 TTCGCCCCTCATCTTAGCAC 59.822 55.000 0.00 0.00 0.00 4.40
785 893 1.227674 CGCCCCTCATCTTAGCACC 60.228 63.158 0.00 0.00 0.00 5.01
786 894 1.149401 GCCCCTCATCTTAGCACCC 59.851 63.158 0.00 0.00 0.00 4.61
787 895 1.635817 GCCCCTCATCTTAGCACCCA 61.636 60.000 0.00 0.00 0.00 4.51
788 896 1.143813 CCCCTCATCTTAGCACCCAT 58.856 55.000 0.00 0.00 0.00 4.00
789 897 1.202855 CCCCTCATCTTAGCACCCATG 60.203 57.143 0.00 0.00 0.00 3.66
882 991 1.202651 GGGTATCCGTGAGTGGATTGG 60.203 57.143 0.00 0.00 46.74 3.16
895 1004 3.139077 GTGGATTGGTCGGTCAATATCC 58.861 50.000 4.58 0.00 37.47 2.59
996 1105 2.741612 GATCTGCAGACTCAGAATCGG 58.258 52.381 20.97 0.00 45.17 4.18
1017 1126 1.739338 CGATGGGGTCCTTCCTCTCG 61.739 65.000 0.00 0.00 37.63 4.04
1060 1181 3.863543 TTGATCATGGCGCACGCG 61.864 61.111 10.83 3.53 43.06 6.01
1097 1218 1.562672 ATAAAGGAGTGCACCCGCCT 61.563 55.000 14.63 15.18 37.32 5.52
1208 1329 4.500117 CACGTTGTTACAAGAGTACGTTCA 59.500 41.667 9.08 0.00 37.17 3.18
1234 1355 1.416401 CCTACACGCTCATTACCCCAT 59.584 52.381 0.00 0.00 0.00 4.00
1235 1356 2.548067 CCTACACGCTCATTACCCCATC 60.548 54.545 0.00 0.00 0.00 3.51
1245 1367 0.345502 TTACCCCATCCCCAGCTAGT 59.654 55.000 0.00 0.00 0.00 2.57
1481 2366 4.201657 TCCGATCCAATAGAGTACGTCAA 58.798 43.478 0.00 0.00 0.00 3.18
1492 2377 9.831054 CAATAGAGTACGTCAATTAATTTCGAC 57.169 33.333 21.49 15.22 0.00 4.20
1494 2379 6.392354 AGAGTACGTCAATTAATTTCGACCA 58.608 36.000 21.49 6.56 0.00 4.02
1495 2380 6.530534 AGAGTACGTCAATTAATTTCGACCAG 59.469 38.462 21.49 9.37 0.00 4.00
1502 2387 2.981859 TAATTTCGACCAGAGGGAGC 57.018 50.000 0.00 0.00 38.05 4.70
1506 2391 1.536073 TTCGACCAGAGGGAGCAGTG 61.536 60.000 0.00 0.00 38.05 3.66
1535 2420 8.281531 ACATCTTATATTTGTGAATGGAGGGAA 58.718 33.333 0.00 0.00 0.00 3.97
1557 2442 8.138074 GGGAATACCTAATTTCTTCTTTCATGC 58.862 37.037 0.00 0.00 35.85 4.06
1755 2640 2.039084 CCTAGCGGCTTCCCAATTCTAT 59.961 50.000 8.26 0.00 0.00 1.98
1762 2647 5.241728 GCGGCTTCCCAATTCTATAATCTTT 59.758 40.000 0.00 0.00 0.00 2.52
1846 2731 2.441348 TATCCCGCCGAGCTGACA 60.441 61.111 0.00 0.00 0.00 3.58
2174 3192 5.123979 GCTTTTTGTACAGATGGGTCTAAGG 59.876 44.000 0.00 0.00 32.09 2.69
2289 3307 4.345837 TGATCCTATGAGACATGCATCACA 59.654 41.667 0.00 0.00 0.00 3.58
2292 3310 4.591924 TCCTATGAGACATGCATCACAGAT 59.408 41.667 7.44 0.00 0.00 2.90
2381 3404 0.179234 TTGTTGTCCGAGCTTCACCA 59.821 50.000 0.00 0.00 0.00 4.17
2434 3458 9.037417 CGAAGACGTCTATAAAATTTGAACAAC 57.963 33.333 20.39 0.00 34.56 3.32
2494 3522 3.168773 GCAATAAGCGGACCCTCAA 57.831 52.632 0.00 0.00 0.00 3.02
2544 3572 2.566833 TGGACATAGGTGGCATATGC 57.433 50.000 19.79 19.79 33.89 3.14
2582 3610 4.039004 CCCTCAGATACTCTGTTCAGGATG 59.961 50.000 10.42 0.00 44.58 3.51
2835 3863 7.728148 TGATGAATATGCACTTGCCATATTTT 58.272 30.769 14.58 9.27 41.18 1.82
2902 3930 6.249192 TGGTTACACATTTAATCCATGGTGA 58.751 36.000 12.58 0.00 0.00 4.02
3129 4162 5.123502 GTCGACTCAGTTCAATACTACTGGA 59.876 44.000 8.70 0.00 41.58 3.86
3341 4379 8.049117 TGACATACCTTCTCTTTATTGCTGATT 58.951 33.333 0.00 0.00 0.00 2.57
3413 4451 8.808529 CGAATAATTCCACTAGTGAAACAGTAG 58.191 37.037 24.68 4.84 41.60 2.57
3439 4477 6.968904 CAGAACTTGATGAATTGTATTTCCCG 59.031 38.462 0.00 0.00 0.00 5.14
3487 4525 5.756195 TGCAAGGCATGTTAAGACATATC 57.244 39.130 0.00 0.00 44.55 1.63
3519 4557 4.473444 TGAAGGAGAAAGGCTTTGTTGAT 58.527 39.130 18.79 3.28 0.00 2.57
3555 4593 7.290014 TGTCATAATTATTGGCTAGGAGACAGA 59.710 37.037 0.00 0.00 32.83 3.41
3556 4594 8.150945 GTCATAATTATTGGCTAGGAGACAGAA 58.849 37.037 0.00 0.00 32.83 3.02
3574 4612 5.419542 ACAGAAAAGAAAGTTTTGGAAGCC 58.580 37.500 0.00 0.00 0.00 4.35
3594 4632 3.537506 TCTCCCACCCTCACCCCA 61.538 66.667 0.00 0.00 0.00 4.96
3596 4634 2.856988 TCCCACCCTCACCCCAAC 60.857 66.667 0.00 0.00 0.00 3.77
3633 4671 4.262721 CCAGTTACAACTAACAGGGCACTA 60.263 45.833 0.00 0.00 36.37 2.74
3699 4737 5.971792 GCACTTACTGGAAAAGAGTTTCAAC 59.028 40.000 1.97 0.00 44.29 3.18
3717 4755 7.287696 AGTTTCAACCATCCTTTATGTTGTTCT 59.712 33.333 0.00 0.00 33.34 3.01
3758 4796 8.689061 TGCAGTAAATTATTCATTGCTCTTGAT 58.311 29.630 0.00 0.00 0.00 2.57
3815 4853 6.514947 TCTGGTTCATTTGTTGAAATCCTTG 58.485 36.000 0.00 0.00 45.71 3.61
3816 4854 5.609423 TGGTTCATTTGTTGAAATCCTTGG 58.391 37.500 0.00 0.00 45.71 3.61
3817 4855 5.130145 TGGTTCATTTGTTGAAATCCTTGGT 59.870 36.000 0.00 0.00 45.71 3.67
3818 4856 6.325028 TGGTTCATTTGTTGAAATCCTTGGTA 59.675 34.615 0.00 0.00 45.71 3.25
3819 4857 7.016072 TGGTTCATTTGTTGAAATCCTTGGTAT 59.984 33.333 0.00 0.00 45.71 2.73
3822 4860 7.377398 TCATTTGTTGAAATCCTTGGTATGTG 58.623 34.615 0.00 0.00 28.65 3.21
3860 5189 5.685511 CACTTTAATTTGAAATATCGGCCCG 59.314 40.000 0.00 0.00 0.00 6.13
3872 5201 0.250381 TCGGCCCGTTATGTGTTTGT 60.250 50.000 1.63 0.00 0.00 2.83
3884 5214 3.928727 TGTGTTTGTAGGTCCTACTCG 57.071 47.619 26.04 0.00 37.78 4.18
3898 5228 3.753434 CTCGACCTGACGGCAGCT 61.753 66.667 14.57 0.00 40.91 4.24
3924 5254 6.462500 ACCATTATCAGTATCAGTCTGCATC 58.538 40.000 0.00 0.00 33.48 3.91
3969 5299 2.264794 GGTTCCATGCGTCTCGGT 59.735 61.111 0.00 0.00 0.00 4.69
3970 5300 1.810030 GGTTCCATGCGTCTCGGTC 60.810 63.158 0.00 0.00 0.00 4.79
3971 5301 1.215647 GTTCCATGCGTCTCGGTCT 59.784 57.895 0.00 0.00 0.00 3.85
3972 5302 0.802607 GTTCCATGCGTCTCGGTCTC 60.803 60.000 0.00 0.00 0.00 3.36
3973 5303 2.266376 TTCCATGCGTCTCGGTCTCG 62.266 60.000 0.00 0.00 37.82 4.04
3974 5304 2.278206 CATGCGTCTCGGTCTCGG 60.278 66.667 0.00 0.00 36.95 4.63
3999 5329 6.014156 GGTCATATGACTGGGCTAGAAGTAAT 60.014 42.308 29.87 0.00 44.20 1.89
4015 5345 1.599542 GTAATGCGGAGACTTGATGCC 59.400 52.381 0.00 0.00 0.00 4.40
4048 5378 2.432510 GACCTCAGATGGTAAGTGGGAG 59.567 54.545 0.00 0.00 41.00 4.30
4054 5384 2.197465 GATGGTAAGTGGGAGGTTCCT 58.803 52.381 0.00 0.00 36.57 3.36
4057 5387 1.613520 GGTAAGTGGGAGGTTCCTTGC 60.614 57.143 0.00 0.00 36.57 4.01
4061 5392 1.217942 AGTGGGAGGTTCCTTGCTTTT 59.782 47.619 0.00 0.00 36.57 2.27
4063 5394 0.969149 GGGAGGTTCCTTGCTTTTGG 59.031 55.000 0.00 0.00 36.57 3.28
4073 5404 6.239317 GGTTCCTTGCTTTTGGTTTCTTCTAT 60.239 38.462 0.00 0.00 0.00 1.98
4097 5429 8.996651 ATGGTTAAGTTCCCATTATTTCTAGG 57.003 34.615 1.95 0.00 38.28 3.02
4098 5430 7.351166 TGGTTAAGTTCCCATTATTTCTAGGG 58.649 38.462 0.00 0.00 42.86 3.53
4104 5436 5.860648 TCCCATTATTTCTAGGGAATCCC 57.139 43.478 11.16 11.16 46.94 3.85
4113 5445 4.752514 GGGAATCCCGTCGATCAC 57.247 61.111 0.90 0.00 32.13 3.06
4114 5446 1.820581 GGGAATCCCGTCGATCACA 59.179 57.895 0.90 0.00 32.13 3.58
4116 5448 0.460311 GGAATCCCGTCGATCACACT 59.540 55.000 0.00 0.00 0.00 3.55
4117 5449 1.134788 GGAATCCCGTCGATCACACTT 60.135 52.381 0.00 0.00 0.00 3.16
4119 5451 1.182667 ATCCCGTCGATCACACTTCA 58.817 50.000 0.00 0.00 0.00 3.02
4120 5452 1.182667 TCCCGTCGATCACACTTCAT 58.817 50.000 0.00 0.00 0.00 2.57
4122 5454 2.956333 TCCCGTCGATCACACTTCATAT 59.044 45.455 0.00 0.00 0.00 1.78
4123 5455 3.052745 CCCGTCGATCACACTTCATATG 58.947 50.000 0.00 0.00 0.00 1.78
4124 5456 2.472861 CCGTCGATCACACTTCATATGC 59.527 50.000 0.00 0.00 0.00 3.14
4126 5458 3.181178 CGTCGATCACACTTCATATGCTG 59.819 47.826 0.00 0.00 0.00 4.41
4128 5460 4.987285 GTCGATCACACTTCATATGCTGAT 59.013 41.667 0.00 0.00 32.72 2.90
4129 5461 5.118357 GTCGATCACACTTCATATGCTGATC 59.882 44.000 0.00 7.28 34.61 2.92
4131 5463 5.118817 CGATCACACTTCATATGCTGATCTG 59.881 44.000 16.52 0.00 35.15 2.90
4133 5465 4.162888 TCACACTTCATATGCTGATCTGGT 59.837 41.667 0.00 0.00 32.72 4.00
4134 5466 4.510711 CACACTTCATATGCTGATCTGGTC 59.489 45.833 0.00 0.00 32.72 4.02
4135 5467 4.063689 CACTTCATATGCTGATCTGGTCC 58.936 47.826 0.00 0.00 32.72 4.46
4138 5470 2.560105 TCATATGCTGATCTGGTCCTCG 59.440 50.000 0.00 0.00 0.00 4.63
4139 5471 2.073252 TATGCTGATCTGGTCCTCGT 57.927 50.000 1.46 0.00 0.00 4.18
4140 5472 0.749649 ATGCTGATCTGGTCCTCGTC 59.250 55.000 1.46 0.00 0.00 4.20
4142 5474 1.040339 GCTGATCTGGTCCTCGTCCT 61.040 60.000 1.46 0.00 0.00 3.85
4143 5475 0.743688 CTGATCTGGTCCTCGTCCTG 59.256 60.000 0.00 0.00 0.00 3.86
4144 5476 0.331616 TGATCTGGTCCTCGTCCTGA 59.668 55.000 0.00 0.00 37.34 3.86
4145 5477 0.741915 GATCTGGTCCTCGTCCTGAC 59.258 60.000 0.00 0.00 36.16 3.51
4148 5480 3.450115 GGTCCTCGTCCTGACCGG 61.450 72.222 0.00 0.00 41.48 5.28
4149 5481 4.131088 GTCCTCGTCCTGACCGGC 62.131 72.222 0.00 0.00 0.00 6.13
4150 5482 4.361971 TCCTCGTCCTGACCGGCT 62.362 66.667 0.00 0.00 0.00 5.52
4153 5485 3.343788 CTCGTCCTGACCGGCTGAC 62.344 68.421 0.00 1.91 0.00 3.51
4155 5487 2.262915 GTCCTGACCGGCTGACTG 59.737 66.667 0.00 0.00 0.00 3.51
4157 5489 4.007644 CCTGACCGGCTGACTGCA 62.008 66.667 0.00 0.00 45.15 4.41
4158 5490 2.433838 CTGACCGGCTGACTGCAG 60.434 66.667 13.48 13.48 45.15 4.41
4163 5495 4.767255 CGGCTGACTGCAGGGGTC 62.767 72.222 19.93 8.21 45.15 4.46
4164 5496 3.325753 GGCTGACTGCAGGGGTCT 61.326 66.667 19.93 0.00 45.15 3.85
4165 5497 2.267324 GCTGACTGCAGGGGTCTC 59.733 66.667 19.93 6.49 42.53 3.36
4166 5498 2.587247 GCTGACTGCAGGGGTCTCA 61.587 63.158 19.93 11.12 42.53 3.27
4167 5499 1.908340 GCTGACTGCAGGGGTCTCAT 61.908 60.000 19.93 0.00 42.53 2.90
4168 5500 0.177604 CTGACTGCAGGGGTCTCATC 59.822 60.000 19.93 4.13 38.51 2.92
4169 5501 0.252421 TGACTGCAGGGGTCTCATCT 60.252 55.000 19.93 0.00 35.04 2.90
4170 5502 1.007118 TGACTGCAGGGGTCTCATCTA 59.993 52.381 19.93 0.00 35.04 1.98
4171 5503 1.686052 GACTGCAGGGGTCTCATCTAG 59.314 57.143 19.93 0.00 0.00 2.43
4172 5504 0.392336 CTGCAGGGGTCTCATCTAGC 59.608 60.000 5.57 0.00 0.00 3.42
4173 5505 0.325577 TGCAGGGGTCTCATCTAGCA 60.326 55.000 0.00 0.00 0.00 3.49
4174 5506 0.833287 GCAGGGGTCTCATCTAGCAA 59.167 55.000 0.00 0.00 0.00 3.91
4175 5507 1.210478 GCAGGGGTCTCATCTAGCAAA 59.790 52.381 0.00 0.00 0.00 3.68
4176 5508 2.744494 GCAGGGGTCTCATCTAGCAAAG 60.744 54.545 0.00 0.00 0.00 2.77
4177 5509 2.122768 AGGGGTCTCATCTAGCAAAGG 58.877 52.381 0.00 0.00 0.00 3.11
4178 5510 1.475930 GGGGTCTCATCTAGCAAAGGC 60.476 57.143 0.00 0.00 41.61 4.35
4179 5511 1.210478 GGGTCTCATCTAGCAAAGGCA 59.790 52.381 0.00 0.00 44.61 4.75
4180 5512 2.356125 GGGTCTCATCTAGCAAAGGCAA 60.356 50.000 0.00 0.00 44.61 4.52
4181 5513 3.347216 GGTCTCATCTAGCAAAGGCAAA 58.653 45.455 0.00 0.00 44.61 3.68
4182 5514 3.127721 GGTCTCATCTAGCAAAGGCAAAC 59.872 47.826 0.00 0.00 44.61 2.93
4183 5515 3.753272 GTCTCATCTAGCAAAGGCAAACA 59.247 43.478 0.00 0.00 44.61 2.83
4184 5516 4.397417 GTCTCATCTAGCAAAGGCAAACAT 59.603 41.667 0.00 0.00 44.61 2.71
4185 5517 5.586243 GTCTCATCTAGCAAAGGCAAACATA 59.414 40.000 0.00 0.00 44.61 2.29
4186 5518 5.819379 TCTCATCTAGCAAAGGCAAACATAG 59.181 40.000 0.00 0.00 44.61 2.23
4187 5519 5.744171 TCATCTAGCAAAGGCAAACATAGA 58.256 37.500 0.00 0.00 44.61 1.98
4188 5520 6.359804 TCATCTAGCAAAGGCAAACATAGAT 58.640 36.000 0.00 0.00 44.61 1.98
4189 5521 6.261603 TCATCTAGCAAAGGCAAACATAGATG 59.738 38.462 16.51 16.51 44.03 2.90
4190 5522 3.515330 AGCAAAGGCAAACATAGATGC 57.485 42.857 0.00 0.00 44.61 3.91
4191 5523 3.094572 AGCAAAGGCAAACATAGATGCT 58.905 40.909 0.00 0.00 44.61 3.79
4192 5524 3.119245 AGCAAAGGCAAACATAGATGCTG 60.119 43.478 0.00 0.00 44.61 4.41
4193 5525 3.367703 GCAAAGGCAAACATAGATGCTGT 60.368 43.478 0.00 0.00 42.20 4.40
4194 5526 4.418392 CAAAGGCAAACATAGATGCTGTC 58.582 43.478 0.00 0.00 42.20 3.51
4195 5527 2.283298 AGGCAAACATAGATGCTGTCG 58.717 47.619 0.00 0.00 42.20 4.35
4196 5528 2.009774 GGCAAACATAGATGCTGTCGT 58.990 47.619 0.00 0.00 42.20 4.34
4197 5529 2.420022 GGCAAACATAGATGCTGTCGTT 59.580 45.455 0.00 0.00 42.20 3.85
4198 5530 3.419915 GCAAACATAGATGCTGTCGTTG 58.580 45.455 0.00 0.00 39.46 4.10
4199 5531 3.125146 GCAAACATAGATGCTGTCGTTGA 59.875 43.478 0.00 0.00 39.46 3.18
4200 5532 4.641954 CAAACATAGATGCTGTCGTTGAC 58.358 43.478 0.00 0.00 0.00 3.18
4201 5533 2.530177 ACATAGATGCTGTCGTTGACG 58.470 47.619 0.00 0.00 41.45 4.35
4202 5534 1.256376 CATAGATGCTGTCGTTGACGC 59.744 52.381 0.00 6.77 39.60 5.19
4203 5535 0.526211 TAGATGCTGTCGTTGACGCT 59.474 50.000 12.39 0.00 39.60 5.07
4204 5536 0.319900 AGATGCTGTCGTTGACGCTT 60.320 50.000 12.39 7.96 39.60 4.68
4205 5537 0.093705 GATGCTGTCGTTGACGCTTC 59.906 55.000 12.39 11.62 39.60 3.86
4206 5538 0.599991 ATGCTGTCGTTGACGCTTCA 60.600 50.000 12.39 0.00 39.60 3.02
4207 5539 1.215014 TGCTGTCGTTGACGCTTCAG 61.215 55.000 13.99 13.99 39.60 3.02
4208 5540 1.488957 CTGTCGTTGACGCTTCAGC 59.511 57.895 0.00 0.00 39.60 4.26
4209 5541 1.891060 CTGTCGTTGACGCTTCAGCC 61.891 60.000 1.45 0.00 39.60 4.85
4210 5542 2.733218 TCGTTGACGCTTCAGCCG 60.733 61.111 1.45 4.98 39.60 5.52
4211 5543 2.733218 CGTTGACGCTTCAGCCGA 60.733 61.111 8.14 0.00 37.91 5.54
4212 5544 2.853914 GTTGACGCTTCAGCCGAC 59.146 61.111 0.00 0.00 37.91 4.79
4213 5545 1.954146 GTTGACGCTTCAGCCGACA 60.954 57.895 0.00 0.00 37.91 4.35
4214 5546 1.954146 TTGACGCTTCAGCCGACAC 60.954 57.895 0.00 0.00 37.91 3.67
4215 5547 3.112709 GACGCTTCAGCCGACACC 61.113 66.667 0.00 0.00 37.91 4.16
4216 5548 3.858868 GACGCTTCAGCCGACACCA 62.859 63.158 0.00 0.00 37.91 4.17
4217 5549 2.434884 CGCTTCAGCCGACACCAT 60.435 61.111 0.00 0.00 37.91 3.55
4218 5550 2.743752 CGCTTCAGCCGACACCATG 61.744 63.158 0.00 0.00 37.91 3.66
4219 5551 2.401766 GCTTCAGCCGACACCATGG 61.402 63.158 11.19 11.19 34.31 3.66
4220 5552 1.003355 CTTCAGCCGACACCATGGT 60.003 57.895 13.00 13.00 0.00 3.55
4221 5553 0.606401 CTTCAGCCGACACCATGGTT 60.606 55.000 16.84 6.99 0.00 3.67
4222 5554 0.605319 TTCAGCCGACACCATGGTTC 60.605 55.000 16.84 14.92 0.00 3.62
4223 5555 1.003355 CAGCCGACACCATGGTTCT 60.003 57.895 16.84 2.45 0.00 3.01
4224 5556 1.003355 AGCCGACACCATGGTTCTG 60.003 57.895 16.84 13.28 0.00 3.02
4225 5557 1.302511 GCCGACACCATGGTTCTGT 60.303 57.895 16.84 10.83 0.00 3.41
4226 5558 0.036765 GCCGACACCATGGTTCTGTA 60.037 55.000 16.84 0.00 0.00 2.74
4227 5559 1.722011 CCGACACCATGGTTCTGTAC 58.278 55.000 16.84 4.29 0.00 2.90
4249 5581 1.396301 CTGAGAAAGGACGCAATCTGC 59.604 52.381 0.00 0.00 40.69 4.26
4250 5582 1.270785 TGAGAAAGGACGCAATCTGCA 60.271 47.619 0.00 0.00 45.36 4.41
4251 5583 1.129437 GAGAAAGGACGCAATCTGCAC 59.871 52.381 0.00 0.00 45.36 4.57
4254 5586 0.035317 AAGGACGCAATCTGCACAGA 59.965 50.000 2.25 2.25 45.36 3.41
4255 5587 0.390866 AGGACGCAATCTGCACAGAG 60.391 55.000 6.50 0.00 45.36 3.35
4256 5588 1.423056 GACGCAATCTGCACAGAGC 59.577 57.895 6.50 4.37 45.36 4.09
4304 6534 1.666054 CTCTCAGCCTTGGATTCAGC 58.334 55.000 0.00 0.00 0.00 4.26
4313 6543 2.238144 CCTTGGATTCAGCCTGAGAAGA 59.762 50.000 0.00 0.00 0.00 2.87
4319 6549 5.055812 GGATTCAGCCTGAGAAGACAATAG 58.944 45.833 0.00 0.00 0.00 1.73
4336 6566 4.164252 GTCGAAATGACGAGCGGT 57.836 55.556 0.00 0.00 42.88 5.68
4344 6574 4.201685 CGAAATGACGAGCGGTATTTTTCT 60.202 41.667 0.00 0.00 35.09 2.52
4345 6575 4.600012 AATGACGAGCGGTATTTTTCTG 57.400 40.909 0.00 0.00 0.00 3.02
4346 6576 3.306917 TGACGAGCGGTATTTTTCTGA 57.693 42.857 0.00 0.00 0.00 3.27
4347 6577 2.991190 TGACGAGCGGTATTTTTCTGAC 59.009 45.455 0.00 0.00 0.00 3.51
4348 6578 3.251571 GACGAGCGGTATTTTTCTGACT 58.748 45.455 0.00 0.00 0.00 3.41
4349 6579 3.660865 ACGAGCGGTATTTTTCTGACTT 58.339 40.909 0.00 0.00 0.00 3.01
4386 6616 8.339714 TGTAAACCTGAAACTAAAGAACATTCG 58.660 33.333 0.00 0.00 0.00 3.34
4387 6617 5.941948 ACCTGAAACTAAAGAACATTCGG 57.058 39.130 0.00 0.00 0.00 4.30
4389 6619 4.760204 CCTGAAACTAAAGAACATTCGGGT 59.240 41.667 0.00 0.00 40.23 5.28
4390 6620 5.334879 CCTGAAACTAAAGAACATTCGGGTG 60.335 44.000 0.00 0.00 40.23 4.61
4391 6621 4.023536 TGAAACTAAAGAACATTCGGGTGC 60.024 41.667 0.00 0.00 0.00 5.01
4392 6622 3.418684 ACTAAAGAACATTCGGGTGCT 57.581 42.857 0.00 0.00 0.00 4.40
4393 6623 3.751518 ACTAAAGAACATTCGGGTGCTT 58.248 40.909 0.00 0.00 38.31 3.91
4394 6624 4.901868 ACTAAAGAACATTCGGGTGCTTA 58.098 39.130 0.00 0.00 35.56 3.09
4395 6625 4.694037 ACTAAAGAACATTCGGGTGCTTAC 59.306 41.667 0.00 0.00 35.56 2.34
4396 6626 3.418684 AAGAACATTCGGGTGCTTACT 57.581 42.857 0.00 0.00 34.83 2.24
4397 6627 2.973945 AGAACATTCGGGTGCTTACTC 58.026 47.619 0.00 0.00 0.00 2.59
4398 6628 1.659098 GAACATTCGGGTGCTTACTCG 59.341 52.381 0.00 0.00 0.00 4.18
4399 6629 0.739813 ACATTCGGGTGCTTACTCGC 60.740 55.000 0.00 0.00 0.00 5.03
4400 6630 1.518572 ATTCGGGTGCTTACTCGCG 60.519 57.895 0.00 0.00 44.24 5.87
4401 6631 4.789075 TCGGGTGCTTACTCGCGC 62.789 66.667 0.00 0.00 43.06 6.86
4405 6635 4.752879 GTGCTTACTCGCGCCCCA 62.753 66.667 0.00 0.00 34.46 4.96
4406 6636 4.451150 TGCTTACTCGCGCCCCAG 62.451 66.667 0.00 0.00 0.00 4.45
4426 6656 4.247612 GGAGACGACGCGCGGTAT 62.248 66.667 35.22 20.52 46.49 2.73
4427 6657 2.277756 GAGACGACGCGCGGTATT 60.278 61.111 35.22 13.53 46.49 1.89
4428 6658 1.870901 GAGACGACGCGCGGTATTT 60.871 57.895 35.22 16.46 46.49 1.40
4429 6659 2.062890 GAGACGACGCGCGGTATTTG 62.063 60.000 35.22 18.94 46.49 2.32
4430 6660 2.431260 ACGACGCGCGGTATTTGT 60.431 55.556 35.22 19.66 46.49 2.83
4431 6661 2.019476 CGACGCGCGGTATTTGTG 59.981 61.111 35.22 9.96 36.03 3.33
4432 6662 2.398036 GACGCGCGGTATTTGTGG 59.602 61.111 35.22 1.83 0.00 4.17
4433 6663 3.711997 GACGCGCGGTATTTGTGGC 62.712 63.158 35.22 0.00 0.00 5.01
4434 6664 3.496131 CGCGCGGTATTTGTGGCT 61.496 61.111 24.84 0.00 0.00 4.75
4435 6665 2.100216 GCGCGGTATTTGTGGCTG 59.900 61.111 8.83 0.00 0.00 4.85
4436 6666 2.791256 CGCGGTATTTGTGGCTGG 59.209 61.111 0.00 0.00 0.00 4.85
4437 6667 1.743623 CGCGGTATTTGTGGCTGGA 60.744 57.895 0.00 0.00 0.00 3.86
4438 6668 1.302383 CGCGGTATTTGTGGCTGGAA 61.302 55.000 0.00 0.00 0.00 3.53
4439 6669 0.451783 GCGGTATTTGTGGCTGGAAG 59.548 55.000 0.00 0.00 0.00 3.46
4440 6670 1.948611 GCGGTATTTGTGGCTGGAAGA 60.949 52.381 0.00 0.00 34.07 2.87
4441 6671 2.009774 CGGTATTTGTGGCTGGAAGAG 58.990 52.381 0.00 0.00 34.07 2.85
4442 6672 2.354704 CGGTATTTGTGGCTGGAAGAGA 60.355 50.000 0.00 0.00 34.07 3.10
4443 6673 3.010420 GGTATTTGTGGCTGGAAGAGAC 58.990 50.000 0.00 0.00 34.07 3.36
4444 6674 2.206576 ATTTGTGGCTGGAAGAGACC 57.793 50.000 0.00 0.00 34.07 3.85
4445 6675 1.140312 TTTGTGGCTGGAAGAGACCT 58.860 50.000 0.00 0.00 34.07 3.85
4446 6676 0.687354 TTGTGGCTGGAAGAGACCTC 59.313 55.000 0.00 0.00 34.07 3.85
4447 6677 1.194781 TGTGGCTGGAAGAGACCTCC 61.195 60.000 0.00 0.00 34.07 4.30
4448 6678 0.907230 GTGGCTGGAAGAGACCTCCT 60.907 60.000 0.00 0.00 34.07 3.69
4449 6679 0.178891 TGGCTGGAAGAGACCTCCTT 60.179 55.000 0.00 0.00 34.07 3.36
4450 6680 0.988063 GGCTGGAAGAGACCTCCTTT 59.012 55.000 0.00 0.00 34.07 3.11
4451 6681 1.352687 GGCTGGAAGAGACCTCCTTTT 59.647 52.381 0.00 0.00 34.07 2.27
4452 6682 2.616765 GGCTGGAAGAGACCTCCTTTTC 60.617 54.545 0.00 0.00 35.80 2.29
4453 6683 2.304470 GCTGGAAGAGACCTCCTTTTCT 59.696 50.000 0.00 0.00 36.53 2.52
4454 6684 3.244735 GCTGGAAGAGACCTCCTTTTCTT 60.245 47.826 0.00 0.00 36.53 2.52
4455 6685 4.322567 CTGGAAGAGACCTCCTTTTCTTG 58.677 47.826 0.00 0.00 36.53 3.02
4456 6686 3.073062 TGGAAGAGACCTCCTTTTCTTGG 59.927 47.826 0.00 0.00 36.53 3.61
4457 6687 2.869101 AGAGACCTCCTTTTCTTGGC 57.131 50.000 0.00 0.00 0.00 4.52
4458 6688 2.057922 AGAGACCTCCTTTTCTTGGCA 58.942 47.619 0.00 0.00 0.00 4.92
4459 6689 2.443255 AGAGACCTCCTTTTCTTGGCAA 59.557 45.455 0.00 0.00 0.00 4.52
4460 6690 2.554462 GAGACCTCCTTTTCTTGGCAAC 59.446 50.000 0.00 0.00 0.00 4.17
4461 6691 2.175715 AGACCTCCTTTTCTTGGCAACT 59.824 45.455 0.00 0.00 37.61 3.16
4462 6692 3.394606 AGACCTCCTTTTCTTGGCAACTA 59.605 43.478 0.00 0.00 37.61 2.24
4463 6693 4.141251 AGACCTCCTTTTCTTGGCAACTAA 60.141 41.667 0.00 0.00 37.61 2.24
4464 6694 4.740902 ACCTCCTTTTCTTGGCAACTAAT 58.259 39.130 0.00 0.00 37.61 1.73
4465 6695 4.524328 ACCTCCTTTTCTTGGCAACTAATG 59.476 41.667 0.00 0.00 37.61 1.90
4485 6725 1.608055 CTGTTCCATGGTGTTGCAGA 58.392 50.000 12.58 0.00 0.00 4.26
4492 6732 1.467734 CATGGTGTTGCAGAGCTTCTC 59.532 52.381 0.00 0.00 0.00 2.87
4511 6751 3.782523 TCTCTGTCTATCCTTTGGGCATT 59.217 43.478 0.00 0.00 0.00 3.56
4525 6765 2.236146 TGGGCATTATCGTCTGTGAAGT 59.764 45.455 0.00 0.00 0.00 3.01
4526 6766 2.609459 GGGCATTATCGTCTGTGAAGTG 59.391 50.000 0.00 0.00 0.00 3.16
4527 6767 3.521560 GGCATTATCGTCTGTGAAGTGA 58.478 45.455 0.00 0.00 0.00 3.41
4528 6768 3.553511 GGCATTATCGTCTGTGAAGTGAG 59.446 47.826 0.00 0.00 0.00 3.51
4535 6775 1.723542 GTCTGTGAAGTGAGCACATCG 59.276 52.381 3.19 0.00 44.42 3.84
4546 6786 0.675837 AGCACATCGCAGTGAAGCAT 60.676 50.000 10.65 0.00 46.13 3.79
4553 6793 1.001293 TCGCAGTGAAGCATTGACTCT 59.999 47.619 0.00 0.00 38.47 3.24
4582 6822 2.582728 TTGCTGCTTTTGGTGAGTTG 57.417 45.000 0.00 0.00 0.00 3.16
4624 7251 2.041081 CCCCAATCAGTTAGGACACCAA 59.959 50.000 0.00 0.00 0.00 3.67
4642 7269 4.160065 CACCAAGATCATTGCCCAATACAA 59.840 41.667 0.00 0.00 0.00 2.41
4643 7270 4.776837 ACCAAGATCATTGCCCAATACAAA 59.223 37.500 0.00 0.00 0.00 2.83
4655 7282 3.758023 CCCAATACAAAGACAGTGATGCA 59.242 43.478 0.00 0.00 0.00 3.96
4665 7292 4.202441 AGACAGTGATGCAAAGTTCAAGT 58.798 39.130 0.00 0.00 0.00 3.16
4669 7296 6.000219 ACAGTGATGCAAAGTTCAAGTAGAT 59.000 36.000 0.00 0.00 0.00 1.98
4688 7315 7.059788 AGTAGATATGATGTGAGTGTGACTCT 58.940 38.462 5.39 0.00 45.27 3.24
4697 7324 5.592054 TGTGAGTGTGACTCTAAGAAAGTG 58.408 41.667 5.39 0.00 45.27 3.16
4712 7339 8.830580 TCTAAGAAAGTGAAAGTGACAAGATTG 58.169 33.333 0.00 0.00 0.00 2.67
4719 7346 7.646314 AGTGAAAGTGACAAGATTGATTTCAG 58.354 34.615 14.23 0.00 34.34 3.02
4739 7366 2.563179 AGCACAGTGAAGTACAGTAGGG 59.437 50.000 4.15 0.00 0.00 3.53
4743 7370 1.544691 AGTGAAGTACAGTAGGGCACG 59.455 52.381 0.00 0.00 0.00 5.34
4771 7401 2.375146 CCGGGGTTTATCCTCCTTTTG 58.625 52.381 0.00 0.00 36.25 2.44
4861 7506 6.072838 AGCATGTTATTCTCAACACACTGAAG 60.073 38.462 0.00 0.00 41.02 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 5.476091 AAGTGAAAGTGGGTGTTCAAAAA 57.524 34.783 0.00 0.00 35.60 1.94
143 144 5.011125 TGAAAGTGAAAGTGGGTGTTCAAAA 59.989 36.000 0.00 0.00 35.60 2.44
144 145 4.524714 TGAAAGTGAAAGTGGGTGTTCAAA 59.475 37.500 0.00 0.00 35.60 2.69
145 146 4.082463 GTGAAAGTGAAAGTGGGTGTTCAA 60.082 41.667 0.00 0.00 35.60 2.69
146 147 3.442273 GTGAAAGTGAAAGTGGGTGTTCA 59.558 43.478 0.00 0.00 0.00 3.18
147 148 3.694566 AGTGAAAGTGAAAGTGGGTGTTC 59.305 43.478 0.00 0.00 0.00 3.18
148 149 3.697166 AGTGAAAGTGAAAGTGGGTGTT 58.303 40.909 0.00 0.00 0.00 3.32
149 150 3.366052 AGTGAAAGTGAAAGTGGGTGT 57.634 42.857 0.00 0.00 0.00 4.16
150 151 3.694072 TGAAGTGAAAGTGAAAGTGGGTG 59.306 43.478 0.00 0.00 0.00 4.61
151 152 3.947834 CTGAAGTGAAAGTGAAAGTGGGT 59.052 43.478 0.00 0.00 0.00 4.51
152 153 3.316308 CCTGAAGTGAAAGTGAAAGTGGG 59.684 47.826 0.00 0.00 0.00 4.61
208 228 0.106708 TAGCCGACTGAATGGGATGC 59.893 55.000 0.00 0.00 0.00 3.91
520 590 4.069232 CTGCGACTTGGAGGCCGA 62.069 66.667 0.00 0.00 31.26 5.54
606 714 5.295787 TGCTTACGTTCTGTCTTGTGAAAAT 59.704 36.000 0.00 0.00 0.00 1.82
668 776 2.716424 GGGATTGGAGGTGGGAATATGA 59.284 50.000 0.00 0.00 0.00 2.15
684 792 0.824759 GAGGACGTACAGCAGGGATT 59.175 55.000 0.00 0.00 0.00 3.01
786 894 5.374921 AGATAAGACCTCTTCCAATGCATG 58.625 41.667 0.00 0.00 37.40 4.06
787 895 5.643421 AGATAAGACCTCTTCCAATGCAT 57.357 39.130 0.00 0.00 37.40 3.96
788 896 5.190528 AGAAGATAAGACCTCTTCCAATGCA 59.809 40.000 8.93 0.00 46.39 3.96
789 897 5.679601 AGAAGATAAGACCTCTTCCAATGC 58.320 41.667 8.93 0.00 46.39 3.56
790 898 6.099557 AGGAGAAGATAAGACCTCTTCCAATG 59.900 42.308 8.93 0.00 46.39 2.82
791 899 6.209026 AGGAGAAGATAAGACCTCTTCCAAT 58.791 40.000 8.93 0.00 46.39 3.16
792 900 5.594777 AGGAGAAGATAAGACCTCTTCCAA 58.405 41.667 8.93 0.00 46.39 3.53
793 901 5.213868 AGGAGAAGATAAGACCTCTTCCA 57.786 43.478 8.93 0.00 46.39 3.53
794 902 6.407639 GGAAAGGAGAAGATAAGACCTCTTCC 60.408 46.154 8.93 0.00 46.39 3.46
795 903 6.407639 GGGAAAGGAGAAGATAAGACCTCTTC 60.408 46.154 5.17 5.17 45.85 2.87
796 904 5.427157 GGGAAAGGAGAAGATAAGACCTCTT 59.573 44.000 0.00 0.00 39.85 2.85
797 905 4.966168 GGGAAAGGAGAAGATAAGACCTCT 59.034 45.833 0.00 0.00 0.00 3.69
798 906 4.101898 GGGGAAAGGAGAAGATAAGACCTC 59.898 50.000 0.00 0.00 0.00 3.85
799 907 4.041464 GGGGAAAGGAGAAGATAAGACCT 58.959 47.826 0.00 0.00 0.00 3.85
800 908 3.780850 TGGGGAAAGGAGAAGATAAGACC 59.219 47.826 0.00 0.00 0.00 3.85
801 909 5.045505 ACTTGGGGAAAGGAGAAGATAAGAC 60.046 44.000 0.00 0.00 40.51 3.01
802 910 5.045578 CACTTGGGGAAAGGAGAAGATAAGA 60.046 44.000 0.00 0.00 40.51 2.10
803 911 5.189180 CACTTGGGGAAAGGAGAAGATAAG 58.811 45.833 0.00 0.00 40.51 1.73
882 991 4.691216 GGAAATAGCAGGATATTGACCGAC 59.309 45.833 0.00 0.00 0.00 4.79
895 1004 4.059511 CAGCAGATCAGAGGAAATAGCAG 58.940 47.826 0.00 0.00 0.00 4.24
944 1053 2.413765 CGCGTTAGGGAGAGAGGC 59.586 66.667 0.00 0.00 0.00 4.70
996 1105 0.688087 AGAGGAAGGACCCCATCGAC 60.688 60.000 0.00 0.00 40.05 4.20
1060 1181 3.851128 GGTAGGAGAGCGGTGGGC 61.851 72.222 0.00 0.00 44.05 5.36
1064 1185 2.040178 CCTTTATGGTAGGAGAGCGGT 58.960 52.381 0.00 0.00 34.56 5.68
1097 1218 3.519510 AGCTAGCTCCTGGTTTGTCATAA 59.480 43.478 12.68 0.00 0.00 1.90
1208 1329 3.573110 GGTAATGAGCGTGTAGGTAGGAT 59.427 47.826 0.00 0.00 0.00 3.24
1245 1367 4.101114 TGTGAATGGAGGGAGTAGCTAAA 58.899 43.478 0.00 0.00 0.00 1.85
1450 2334 2.777459 ATTGGATCGGAGGGAGTAGT 57.223 50.000 0.00 0.00 0.00 2.73
1481 2366 3.199946 TGCTCCCTCTGGTCGAAATTAAT 59.800 43.478 0.00 0.00 0.00 1.40
1489 2374 2.575993 CACTGCTCCCTCTGGTCG 59.424 66.667 0.00 0.00 0.00 4.79
1492 2377 1.298014 GTTCCACTGCTCCCTCTGG 59.702 63.158 0.00 0.00 0.00 3.86
1494 2379 0.908198 GATGTTCCACTGCTCCCTCT 59.092 55.000 0.00 0.00 0.00 3.69
1495 2380 0.908198 AGATGTTCCACTGCTCCCTC 59.092 55.000 0.00 0.00 0.00 4.30
1502 2387 9.726232 CATTCACAAATATAAGATGTTCCACTG 57.274 33.333 0.00 0.00 0.00 3.66
1506 2391 8.571336 CCTCCATTCACAAATATAAGATGTTCC 58.429 37.037 0.00 0.00 0.00 3.62
1535 2420 8.579850 TGTGCATGAAAGAAGAAATTAGGTAT 57.420 30.769 0.00 0.00 0.00 2.73
1602 2487 9.883142 TCAAAACAAAAAGTAAACATGATCCTT 57.117 25.926 0.00 0.00 0.00 3.36
1734 2619 0.181350 AGAATTGGGAAGCCGCTAGG 59.819 55.000 0.00 0.00 41.62 3.02
1735 2620 2.910688 TAGAATTGGGAAGCCGCTAG 57.089 50.000 0.00 0.00 0.00 3.42
1755 2640 5.880332 CCAAGAGGATCGAAACCAAAGATTA 59.120 40.000 13.17 0.00 42.67 1.75
1846 2731 0.036010 CAGTGGCCTTCATCTCCGTT 60.036 55.000 3.32 0.00 0.00 4.44
2073 3091 5.474825 GACATACAGAGAATTAGCTAGGGC 58.525 45.833 0.00 0.00 39.06 5.19
2174 3192 2.351350 CCGTATCACTTGGGTGCAAAAC 60.351 50.000 0.00 0.00 42.72 2.43
2289 3307 7.657023 AGAAAACCGTAAGTATCCTACATCT 57.343 36.000 0.00 0.00 0.00 2.90
2305 3323 6.677913 ACAAGGATGACAAATAAGAAAACCG 58.322 36.000 0.00 0.00 0.00 4.44
2364 3387 0.798776 CATGGTGAAGCTCGGACAAC 59.201 55.000 0.00 0.00 0.00 3.32
2381 3404 2.226962 AAAGCAAGGATCCTGTGCAT 57.773 45.000 32.28 24.82 40.83 3.96
2408 3431 9.037417 GTTGTTCAAATTTTATAGACGTCTTCG 57.963 33.333 25.44 0.00 43.34 3.79
2430 3454 8.237811 ACATTTTGATTTAGTTCTCCAGTTGT 57.762 30.769 0.00 0.00 0.00 3.32
2433 3457 8.462016 GCATACATTTTGATTTAGTTCTCCAGT 58.538 33.333 0.00 0.00 0.00 4.00
2434 3458 8.680903 AGCATACATTTTGATTTAGTTCTCCAG 58.319 33.333 0.00 0.00 0.00 3.86
2476 3500 1.459450 TTTGAGGGTCCGCTTATTGC 58.541 50.000 0.00 0.00 38.57 3.56
2478 3506 4.409247 AGAGTATTTGAGGGTCCGCTTATT 59.591 41.667 0.00 0.00 0.00 1.40
2482 3510 1.482593 CAGAGTATTTGAGGGTCCGCT 59.517 52.381 0.00 0.00 0.00 5.52
2485 3513 4.508662 CTGAACAGAGTATTTGAGGGTCC 58.491 47.826 0.00 0.00 0.00 4.46
2494 3522 9.014297 CCAAAGTTTAATCCTGAACAGAGTATT 57.986 33.333 3.19 3.60 0.00 1.89
2544 3572 3.135348 TCTGAGGGTCAGCTTATGGATTG 59.865 47.826 0.00 0.00 43.95 2.67
2756 3784 6.003326 TCAATACTTTGTCCTGCTTGATTGA 58.997 36.000 0.00 0.00 34.32 2.57
2835 3863 4.974645 TGAGCAGAAGGGAAAACTCTAA 57.025 40.909 0.00 0.00 0.00 2.10
3306 4344 3.929610 GAGAAGGTATGTCAAGTCAGTGC 59.070 47.826 0.00 0.00 0.00 4.40
3341 4379 1.494960 AAAGCAAGAAGGTTGGGCAA 58.505 45.000 0.00 0.00 38.12 4.52
3413 4451 6.753744 GGGAAATACAATTCATCAAGTTCTGC 59.246 38.462 0.00 0.00 0.00 4.26
3439 4477 2.902705 TTATCCGGACATGCAGGTAC 57.097 50.000 6.12 2.89 33.11 3.34
3487 4525 3.057736 CCTTTCTCCTTCAGTGCAACATG 60.058 47.826 0.00 0.00 41.43 3.21
3519 4557 4.764050 ATAATTATGACACCACGGACCA 57.236 40.909 0.00 0.00 0.00 4.02
3555 4593 5.187772 AGAGTGGCTTCCAAAACTTTCTTTT 59.812 36.000 0.00 0.00 34.18 2.27
3556 4594 4.711846 AGAGTGGCTTCCAAAACTTTCTTT 59.288 37.500 0.00 0.00 34.18 2.52
3574 4612 2.294078 GGGTGAGGGTGGGAGAGTG 61.294 68.421 0.00 0.00 0.00 3.51
3594 4632 7.234661 TGTAACTGGTTTTCCTTTCTTTGTT 57.765 32.000 0.00 0.00 41.38 2.83
3596 4634 7.320399 AGTTGTAACTGGTTTTCCTTTCTTTG 58.680 34.615 0.00 0.00 41.38 2.77
3633 4671 1.960689 GGCATACTTTTGTGTGGGTGT 59.039 47.619 0.00 0.00 41.12 4.16
3740 4778 7.002879 ACCAGCTATCAAGAGCAATGAATAAT 58.997 34.615 0.00 0.00 45.43 1.28
3815 4853 7.158099 AGTGGAAAGCTAAAATTCACATACC 57.842 36.000 0.00 0.00 0.00 2.73
3853 5182 0.250381 ACAAACACATAACGGGCCGA 60.250 50.000 35.78 12.34 0.00 5.54
3860 5189 5.803967 CGAGTAGGACCTACAAACACATAAC 59.196 44.000 29.28 4.61 39.22 1.89
3892 5222 5.551233 TGATACTGATAATGGTAAGCTGCC 58.449 41.667 0.00 0.00 0.00 4.85
3898 5228 7.360113 TGCAGACTGATACTGATAATGGTAA 57.640 36.000 6.65 0.00 37.54 2.85
3924 5254 3.666374 GCATCTTGCTGAAGACAAACGAG 60.666 47.826 0.00 0.00 41.12 4.18
3954 5284 1.511305 GAGACCGAGACGCATGGAA 59.489 57.895 0.00 0.00 0.00 3.53
3969 5299 1.704641 CCCAGTCATATGACCCGAGA 58.295 55.000 28.26 0.00 45.85 4.04
3970 5300 0.034059 GCCCAGTCATATGACCCGAG 59.966 60.000 28.26 17.24 45.85 4.63
3971 5301 0.398522 AGCCCAGTCATATGACCCGA 60.399 55.000 28.26 0.00 45.85 5.14
3972 5302 1.273606 CTAGCCCAGTCATATGACCCG 59.726 57.143 28.26 20.42 45.85 5.28
3973 5303 2.609747 TCTAGCCCAGTCATATGACCC 58.390 52.381 28.26 16.02 45.85 4.46
3974 5304 3.643792 ACTTCTAGCCCAGTCATATGACC 59.356 47.826 28.26 15.26 45.85 4.02
3999 5329 0.035152 ATTGGCATCAAGTCTCCGCA 60.035 50.000 0.00 0.00 36.19 5.69
4015 5345 3.850122 TCTGAGGTCACGAGTGTATTG 57.150 47.619 2.97 0.00 0.00 1.90
4048 5378 3.819564 AGAAACCAAAAGCAAGGAACC 57.180 42.857 0.00 0.00 0.00 3.62
4054 5384 6.478512 AACCATAGAAGAAACCAAAAGCAA 57.521 33.333 0.00 0.00 0.00 3.91
4057 5387 9.678941 GAACTTAACCATAGAAGAAACCAAAAG 57.321 33.333 0.00 0.00 0.00 2.27
4061 5392 6.183361 TGGGAACTTAACCATAGAAGAAACCA 60.183 38.462 0.00 0.00 0.00 3.67
4063 5394 7.939784 ATGGGAACTTAACCATAGAAGAAAC 57.060 36.000 0.00 0.00 45.30 2.78
4073 5404 7.184936 TCCCTAGAAATAATGGGAACTTAACCA 59.815 37.037 0.00 0.00 44.89 3.67
4096 5428 0.529992 GTGTGATCGACGGGATTCCC 60.530 60.000 12.14 12.14 41.09 3.97
4097 5429 0.460311 AGTGTGATCGACGGGATTCC 59.540 55.000 0.00 0.00 34.82 3.01
4098 5430 2.194271 GAAGTGTGATCGACGGGATTC 58.806 52.381 0.00 0.00 34.82 2.52
4100 5432 1.182667 TGAAGTGTGATCGACGGGAT 58.817 50.000 0.00 0.00 38.35 3.85
4101 5433 1.182667 ATGAAGTGTGATCGACGGGA 58.817 50.000 0.00 0.00 0.00 5.14
4102 5434 2.863401 TATGAAGTGTGATCGACGGG 57.137 50.000 0.00 0.00 0.00 5.28
4104 5436 3.181178 CAGCATATGAAGTGTGATCGACG 59.819 47.826 6.97 0.00 0.00 5.12
4105 5437 4.363138 TCAGCATATGAAGTGTGATCGAC 58.637 43.478 6.97 0.00 34.02 4.20
4106 5438 4.654091 TCAGCATATGAAGTGTGATCGA 57.346 40.909 6.97 0.00 34.02 3.59
4107 5439 5.118817 CAGATCAGCATATGAAGTGTGATCG 59.881 44.000 6.97 7.87 43.28 3.69
4108 5440 5.408909 CCAGATCAGCATATGAAGTGTGATC 59.591 44.000 6.97 13.63 42.53 2.92
4109 5441 5.163227 ACCAGATCAGCATATGAAGTGTGAT 60.163 40.000 6.97 5.86 42.53 3.06
4110 5442 4.162888 ACCAGATCAGCATATGAAGTGTGA 59.837 41.667 6.97 1.07 42.53 3.58
4113 5445 4.063689 GGACCAGATCAGCATATGAAGTG 58.936 47.826 6.97 0.25 42.53 3.16
4114 5446 3.972638 AGGACCAGATCAGCATATGAAGT 59.027 43.478 6.97 0.00 42.53 3.01
4116 5448 3.006217 CGAGGACCAGATCAGCATATGAA 59.994 47.826 6.97 0.00 42.53 2.57
4117 5449 2.560105 CGAGGACCAGATCAGCATATGA 59.440 50.000 6.97 0.00 43.70 2.15
4119 5451 2.560542 GACGAGGACCAGATCAGCATAT 59.439 50.000 0.00 0.00 0.00 1.78
4120 5452 1.957177 GACGAGGACCAGATCAGCATA 59.043 52.381 0.00 0.00 0.00 3.14
4122 5454 1.323271 GGACGAGGACCAGATCAGCA 61.323 60.000 0.00 0.00 0.00 4.41
4123 5455 1.040339 AGGACGAGGACCAGATCAGC 61.040 60.000 0.00 0.00 0.00 4.26
4124 5456 0.743688 CAGGACGAGGACCAGATCAG 59.256 60.000 0.00 0.00 0.00 2.90
4126 5458 0.741915 GTCAGGACGAGGACCAGATC 59.258 60.000 0.00 0.00 0.00 2.75
4128 5460 4.417641 GTCAGGACGAGGACCAGA 57.582 61.111 0.00 0.00 0.00 3.86
4133 5465 4.361971 AGCCGGTCAGGACGAGGA 62.362 66.667 1.90 0.00 45.00 3.71
4134 5466 4.135153 CAGCCGGTCAGGACGAGG 62.135 72.222 1.90 7.83 45.00 4.63
4135 5467 3.062466 TCAGCCGGTCAGGACGAG 61.062 66.667 1.90 0.00 45.00 4.18
4138 5470 2.262915 CAGTCAGCCGGTCAGGAC 59.737 66.667 1.90 6.07 45.00 3.85
4139 5471 3.695606 GCAGTCAGCCGGTCAGGA 61.696 66.667 1.90 0.00 45.00 3.86
4140 5472 3.947132 CTGCAGTCAGCCGGTCAGG 62.947 68.421 5.25 0.00 44.83 3.86
4142 5474 4.007644 CCTGCAGTCAGCCGGTCA 62.008 66.667 13.81 0.00 42.17 4.02
4143 5475 4.767255 CCCTGCAGTCAGCCGGTC 62.767 72.222 13.81 0.00 45.32 4.79
4146 5478 4.767255 GACCCCTGCAGTCAGCCG 62.767 72.222 13.81 0.00 44.83 5.52
4147 5479 3.322318 GAGACCCCTGCAGTCAGCC 62.322 68.421 13.81 0.00 44.83 4.85
4148 5480 1.908340 ATGAGACCCCTGCAGTCAGC 61.908 60.000 13.81 2.16 45.96 4.26
4149 5481 0.177604 GATGAGACCCCTGCAGTCAG 59.822 60.000 13.81 3.03 40.02 3.51
4150 5482 0.252421 AGATGAGACCCCTGCAGTCA 60.252 55.000 13.81 9.72 36.68 3.41
4153 5485 0.392336 GCTAGATGAGACCCCTGCAG 59.608 60.000 6.78 6.78 0.00 4.41
4155 5487 0.833287 TTGCTAGATGAGACCCCTGC 59.167 55.000 0.00 0.00 0.00 4.85
4157 5489 2.122768 CCTTTGCTAGATGAGACCCCT 58.877 52.381 0.00 0.00 0.00 4.79
4158 5490 1.475930 GCCTTTGCTAGATGAGACCCC 60.476 57.143 0.00 0.00 33.53 4.95
4159 5491 1.210478 TGCCTTTGCTAGATGAGACCC 59.790 52.381 0.00 0.00 38.71 4.46
4160 5492 2.698855 TGCCTTTGCTAGATGAGACC 57.301 50.000 0.00 0.00 38.71 3.85
4161 5493 3.753272 TGTTTGCCTTTGCTAGATGAGAC 59.247 43.478 0.00 0.00 38.71 3.36
4162 5494 4.019792 TGTTTGCCTTTGCTAGATGAGA 57.980 40.909 0.00 0.00 38.71 3.27
4163 5495 4.978083 ATGTTTGCCTTTGCTAGATGAG 57.022 40.909 0.00 0.00 38.71 2.90
4164 5496 5.744171 TCTATGTTTGCCTTTGCTAGATGA 58.256 37.500 0.00 0.00 38.71 2.92
4165 5497 6.436261 CATCTATGTTTGCCTTTGCTAGATG 58.564 40.000 0.00 0.00 39.40 2.90
4166 5498 5.009410 GCATCTATGTTTGCCTTTGCTAGAT 59.991 40.000 0.00 0.00 38.71 1.98
4167 5499 4.336433 GCATCTATGTTTGCCTTTGCTAGA 59.664 41.667 0.00 0.00 38.71 2.43
4168 5500 4.337555 AGCATCTATGTTTGCCTTTGCTAG 59.662 41.667 0.00 0.00 39.72 3.42
4169 5501 4.096833 CAGCATCTATGTTTGCCTTTGCTA 59.903 41.667 0.00 0.00 39.72 3.49
4170 5502 3.094572 AGCATCTATGTTTGCCTTTGCT 58.905 40.909 0.00 0.00 39.72 3.91
4171 5503 3.184541 CAGCATCTATGTTTGCCTTTGC 58.815 45.455 0.00 0.00 39.72 3.68
4172 5504 4.418392 GACAGCATCTATGTTTGCCTTTG 58.582 43.478 0.00 0.00 39.72 2.77
4173 5505 3.127548 CGACAGCATCTATGTTTGCCTTT 59.872 43.478 0.00 0.00 39.72 3.11
4174 5506 2.679837 CGACAGCATCTATGTTTGCCTT 59.320 45.455 0.00 0.00 39.72 4.35
4175 5507 2.283298 CGACAGCATCTATGTTTGCCT 58.717 47.619 0.00 0.00 39.72 4.75
4176 5508 2.009774 ACGACAGCATCTATGTTTGCC 58.990 47.619 0.00 0.00 39.72 4.52
4177 5509 3.125146 TCAACGACAGCATCTATGTTTGC 59.875 43.478 0.00 0.00 39.17 3.68
4178 5510 4.641954 GTCAACGACAGCATCTATGTTTG 58.358 43.478 0.00 0.00 32.09 2.93
4179 5511 3.367932 CGTCAACGACAGCATCTATGTTT 59.632 43.478 0.00 0.00 43.02 2.83
4180 5512 2.923655 CGTCAACGACAGCATCTATGTT 59.076 45.455 0.00 0.00 43.02 2.71
4181 5513 2.530177 CGTCAACGACAGCATCTATGT 58.470 47.619 0.00 0.00 43.02 2.29
4182 5514 1.256376 GCGTCAACGACAGCATCTATG 59.744 52.381 6.75 0.00 43.02 2.23
4183 5515 1.135139 AGCGTCAACGACAGCATCTAT 59.865 47.619 6.75 0.00 43.02 1.98
4184 5516 0.526211 AGCGTCAACGACAGCATCTA 59.474 50.000 6.75 0.00 43.02 1.98
4185 5517 0.319900 AAGCGTCAACGACAGCATCT 60.320 50.000 6.75 0.00 43.02 2.90
4186 5518 0.093705 GAAGCGTCAACGACAGCATC 59.906 55.000 6.75 6.93 43.02 3.91
4187 5519 0.599991 TGAAGCGTCAACGACAGCAT 60.600 50.000 6.75 2.47 43.02 3.79
4188 5520 1.215014 CTGAAGCGTCAACGACAGCA 61.215 55.000 6.75 0.00 43.02 4.41
4189 5521 1.488957 CTGAAGCGTCAACGACAGC 59.511 57.895 6.75 1.87 43.02 4.40
4190 5522 1.488957 GCTGAAGCGTCAACGACAG 59.511 57.895 6.75 12.20 43.02 3.51
4191 5523 1.954146 GGCTGAAGCGTCAACGACA 60.954 57.895 6.75 2.54 43.26 4.35
4192 5524 2.853914 GGCTGAAGCGTCAACGAC 59.146 61.111 6.75 0.00 43.26 4.34
4193 5525 2.733218 CGGCTGAAGCGTCAACGA 60.733 61.111 17.23 0.00 43.26 3.85
4194 5526 2.733218 TCGGCTGAAGCGTCAACG 60.733 61.111 16.41 16.41 43.26 4.10
4195 5527 1.954146 TGTCGGCTGAAGCGTCAAC 60.954 57.895 3.39 0.00 43.26 3.18
4196 5528 1.954146 GTGTCGGCTGAAGCGTCAA 60.954 57.895 3.39 0.00 43.26 3.18
4197 5529 2.355837 GTGTCGGCTGAAGCGTCA 60.356 61.111 0.00 1.47 43.26 4.35
4198 5530 3.112709 GGTGTCGGCTGAAGCGTC 61.113 66.667 0.00 0.00 43.26 5.19
4199 5531 3.240134 ATGGTGTCGGCTGAAGCGT 62.240 57.895 0.00 0.00 43.26 5.07
4200 5532 2.434884 ATGGTGTCGGCTGAAGCG 60.435 61.111 0.00 0.00 43.26 4.68
4201 5533 2.401766 CCATGGTGTCGGCTGAAGC 61.402 63.158 2.57 0.00 41.14 3.86
4202 5534 0.606401 AACCATGGTGTCGGCTGAAG 60.606 55.000 20.60 0.00 0.00 3.02
4203 5535 0.605319 GAACCATGGTGTCGGCTGAA 60.605 55.000 20.60 0.00 0.00 3.02
4204 5536 1.003839 GAACCATGGTGTCGGCTGA 60.004 57.895 20.60 0.00 0.00 4.26
4205 5537 1.003355 AGAACCATGGTGTCGGCTG 60.003 57.895 20.60 0.00 0.00 4.85
4206 5538 1.003355 CAGAACCATGGTGTCGGCT 60.003 57.895 20.60 8.33 0.00 5.52
4207 5539 0.036765 TACAGAACCATGGTGTCGGC 60.037 55.000 20.60 6.01 0.00 5.54
4208 5540 1.722011 GTACAGAACCATGGTGTCGG 58.278 55.000 20.60 19.16 0.00 4.79
4219 5551 3.614390 CGTCCTTTCTCAGGGTACAGAAC 60.614 52.174 0.00 0.00 44.12 3.01
4220 5552 2.561419 CGTCCTTTCTCAGGGTACAGAA 59.439 50.000 0.00 0.00 44.12 3.02
4221 5553 2.168496 CGTCCTTTCTCAGGGTACAGA 58.832 52.381 0.00 0.00 44.12 3.41
4222 5554 1.404315 GCGTCCTTTCTCAGGGTACAG 60.404 57.143 0.00 0.00 44.12 2.74
4223 5555 0.606604 GCGTCCTTTCTCAGGGTACA 59.393 55.000 0.00 0.00 44.12 2.90
4224 5556 0.606604 TGCGTCCTTTCTCAGGGTAC 59.393 55.000 0.00 0.00 44.12 3.34
4225 5557 1.344065 TTGCGTCCTTTCTCAGGGTA 58.656 50.000 0.00 0.00 44.12 3.69
4226 5558 0.693049 ATTGCGTCCTTTCTCAGGGT 59.307 50.000 0.00 0.00 44.12 4.34
4227 5559 1.065854 AGATTGCGTCCTTTCTCAGGG 60.066 52.381 0.00 0.00 44.12 4.45
4230 5562 1.442769 GCAGATTGCGTCCTTTCTCA 58.557 50.000 0.00 0.00 31.71 3.27
4250 5582 2.356135 ACAAAAACTCACACGCTCTGT 58.644 42.857 0.00 0.00 0.00 3.41
4251 5583 3.354397 GAACAAAAACTCACACGCTCTG 58.646 45.455 0.00 0.00 0.00 3.35
4254 5586 1.063469 CGGAACAAAAACTCACACGCT 59.937 47.619 0.00 0.00 0.00 5.07
4255 5587 1.062880 TCGGAACAAAAACTCACACGC 59.937 47.619 0.00 0.00 0.00 5.34
4256 5588 2.700694 GTCGGAACAAAAACTCACACG 58.299 47.619 0.00 0.00 0.00 4.49
4257 5589 2.700694 CGTCGGAACAAAAACTCACAC 58.299 47.619 0.00 0.00 0.00 3.82
4258 5590 1.062880 GCGTCGGAACAAAAACTCACA 59.937 47.619 0.00 0.00 0.00 3.58
4260 5592 1.370609 TGCGTCGGAACAAAAACTCA 58.629 45.000 0.00 0.00 0.00 3.41
4304 6534 6.254589 GTCATTTCGACTATTGTCTTCTCAGG 59.745 42.308 5.76 0.00 41.81 3.86
4313 6543 2.852413 CGCTCGTCATTTCGACTATTGT 59.148 45.455 0.00 0.00 42.98 2.71
4319 6549 1.836383 ATACCGCTCGTCATTTCGAC 58.164 50.000 0.00 0.00 41.62 4.20
4322 6552 5.022021 CAGAAAAATACCGCTCGTCATTTC 58.978 41.667 0.00 0.00 0.00 2.17
4336 6566 7.876068 ACATCCTCACGTTAAGTCAGAAAAATA 59.124 33.333 0.00 0.00 0.00 1.40
4344 6574 5.011329 AGGTTTACATCCTCACGTTAAGTCA 59.989 40.000 0.00 0.00 0.00 3.41
4345 6575 5.347907 CAGGTTTACATCCTCACGTTAAGTC 59.652 44.000 0.00 0.00 32.37 3.01
4346 6576 5.011329 TCAGGTTTACATCCTCACGTTAAGT 59.989 40.000 0.00 0.00 32.37 2.24
4347 6577 5.475719 TCAGGTTTACATCCTCACGTTAAG 58.524 41.667 0.00 0.00 32.37 1.85
4348 6578 5.471556 TCAGGTTTACATCCTCACGTTAA 57.528 39.130 0.00 0.00 32.37 2.01
4349 6579 5.471556 TTCAGGTTTACATCCTCACGTTA 57.528 39.130 0.00 0.00 32.37 3.18
4389 6619 4.451150 CTGGGGCGCGAGTAAGCA 62.451 66.667 12.10 0.00 36.85 3.91
4409 6639 3.746409 AATACCGCGCGTCGTCTCC 62.746 63.158 29.95 0.00 36.19 3.71
4410 6640 1.870901 AAATACCGCGCGTCGTCTC 60.871 57.895 29.95 0.00 36.19 3.36
4411 6641 2.156446 CAAATACCGCGCGTCGTCT 61.156 57.895 29.95 10.20 36.19 4.18
4412 6642 2.315356 CAAATACCGCGCGTCGTC 59.685 61.111 29.95 0.00 36.19 4.20
4413 6643 2.431260 ACAAATACCGCGCGTCGT 60.431 55.556 29.95 22.24 36.19 4.34
4414 6644 2.019476 CACAAATACCGCGCGTCG 59.981 61.111 29.95 17.12 38.08 5.12
4415 6645 2.398036 CCACAAATACCGCGCGTC 59.602 61.111 29.95 0.00 0.00 5.19
4416 6646 3.795342 GCCACAAATACCGCGCGT 61.795 61.111 29.95 18.85 0.00 6.01
4417 6647 3.496131 AGCCACAAATACCGCGCG 61.496 61.111 25.67 25.67 0.00 6.86
4418 6648 2.100216 CAGCCACAAATACCGCGC 59.900 61.111 0.00 0.00 0.00 6.86
4419 6649 1.302383 TTCCAGCCACAAATACCGCG 61.302 55.000 0.00 0.00 0.00 6.46
4420 6650 0.451783 CTTCCAGCCACAAATACCGC 59.548 55.000 0.00 0.00 0.00 5.68
4421 6651 2.009774 CTCTTCCAGCCACAAATACCG 58.990 52.381 0.00 0.00 0.00 4.02
4422 6652 3.010420 GTCTCTTCCAGCCACAAATACC 58.990 50.000 0.00 0.00 0.00 2.73
4423 6653 3.010420 GGTCTCTTCCAGCCACAAATAC 58.990 50.000 0.00 0.00 0.00 1.89
4424 6654 2.912956 AGGTCTCTTCCAGCCACAAATA 59.087 45.455 0.00 0.00 0.00 1.40
4425 6655 1.707427 AGGTCTCTTCCAGCCACAAAT 59.293 47.619 0.00 0.00 0.00 2.32
4426 6656 1.072331 GAGGTCTCTTCCAGCCACAAA 59.928 52.381 0.00 0.00 0.00 2.83
4427 6657 0.687354 GAGGTCTCTTCCAGCCACAA 59.313 55.000 0.00 0.00 0.00 3.33
4428 6658 1.194781 GGAGGTCTCTTCCAGCCACA 61.195 60.000 0.00 0.00 0.00 4.17
4429 6659 0.907230 AGGAGGTCTCTTCCAGCCAC 60.907 60.000 1.11 0.00 0.00 5.01
4430 6660 0.178891 AAGGAGGTCTCTTCCAGCCA 60.179 55.000 1.11 0.00 0.00 4.75
4431 6661 0.988063 AAAGGAGGTCTCTTCCAGCC 59.012 55.000 1.11 0.00 0.00 4.85
4432 6662 2.304470 AGAAAAGGAGGTCTCTTCCAGC 59.696 50.000 1.11 0.00 0.00 4.85
4433 6663 4.322567 CAAGAAAAGGAGGTCTCTTCCAG 58.677 47.826 1.11 0.00 0.00 3.86
4434 6664 3.073062 CCAAGAAAAGGAGGTCTCTTCCA 59.927 47.826 1.11 0.00 0.00 3.53
4435 6665 3.680490 CCAAGAAAAGGAGGTCTCTTCC 58.320 50.000 0.00 0.00 0.00 3.46
4436 6666 3.078097 GCCAAGAAAAGGAGGTCTCTTC 58.922 50.000 0.00 0.00 0.00 2.87
4437 6667 2.443255 TGCCAAGAAAAGGAGGTCTCTT 59.557 45.455 0.00 0.00 0.00 2.85
4438 6668 2.057922 TGCCAAGAAAAGGAGGTCTCT 58.942 47.619 0.00 0.00 0.00 3.10
4439 6669 2.554462 GTTGCCAAGAAAAGGAGGTCTC 59.446 50.000 0.00 0.00 0.00 3.36
4440 6670 2.175715 AGTTGCCAAGAAAAGGAGGTCT 59.824 45.455 0.00 0.00 0.00 3.85
4441 6671 2.587522 AGTTGCCAAGAAAAGGAGGTC 58.412 47.619 0.00 0.00 0.00 3.85
4442 6672 2.755952 AGTTGCCAAGAAAAGGAGGT 57.244 45.000 0.00 0.00 0.00 3.85
4443 6673 4.619160 GCATTAGTTGCCAAGAAAAGGAGG 60.619 45.833 0.00 0.00 46.15 4.30
4444 6674 4.488879 GCATTAGTTGCCAAGAAAAGGAG 58.511 43.478 0.00 0.00 46.15 3.69
4445 6675 4.519540 GCATTAGTTGCCAAGAAAAGGA 57.480 40.909 0.00 0.00 46.15 3.36
4468 6698 0.242017 GCTCTGCAACACCATGGAAC 59.758 55.000 21.47 2.98 0.00 3.62
4469 6699 0.111061 AGCTCTGCAACACCATGGAA 59.889 50.000 21.47 0.00 0.00 3.53
4470 6700 0.111061 AAGCTCTGCAACACCATGGA 59.889 50.000 21.47 0.00 0.00 3.41
4471 6701 0.524862 GAAGCTCTGCAACACCATGG 59.475 55.000 11.19 11.19 0.00 3.66
4472 6702 1.467734 GAGAAGCTCTGCAACACCATG 59.532 52.381 0.00 0.00 0.00 3.66
4473 6703 1.350351 AGAGAAGCTCTGCAACACCAT 59.650 47.619 0.00 0.00 39.62 3.55
4474 6704 0.761187 AGAGAAGCTCTGCAACACCA 59.239 50.000 0.00 0.00 39.62 4.17
4475 6705 3.621953 AGAGAAGCTCTGCAACACC 57.378 52.632 0.00 0.00 39.62 4.16
4485 6725 3.454082 CCCAAAGGATAGACAGAGAAGCT 59.546 47.826 0.00 0.00 33.47 3.74
4492 6732 4.692625 CGATAATGCCCAAAGGATAGACAG 59.307 45.833 0.00 0.00 33.47 3.51
4496 6736 4.692625 CAGACGATAATGCCCAAAGGATAG 59.307 45.833 0.00 0.00 33.47 2.08
4511 6751 2.556622 TGTGCTCACTTCACAGACGATA 59.443 45.455 1.47 0.00 39.29 2.92
4525 6765 1.293963 GCTTCACTGCGATGTGCTCA 61.294 55.000 3.76 0.00 46.63 4.26
4526 6766 1.293963 TGCTTCACTGCGATGTGCTC 61.294 55.000 3.76 0.00 46.63 4.26
4527 6767 0.675837 ATGCTTCACTGCGATGTGCT 60.676 50.000 3.76 0.00 46.63 4.40
4528 6768 0.169672 AATGCTTCACTGCGATGTGC 59.830 50.000 3.76 1.58 46.70 4.57
4535 6775 2.420642 TCAGAGTCAATGCTTCACTGC 58.579 47.619 0.00 0.00 0.00 4.40
4546 6786 1.806542 GCAAAAGGCGATCAGAGTCAA 59.193 47.619 0.00 0.00 0.00 3.18
4582 6822 1.490574 AGAGGGTGGATGAGTACAGC 58.509 55.000 0.00 0.00 35.90 4.40
4624 7251 5.263599 TGTCTTTGTATTGGGCAATGATCT 58.736 37.500 0.00 0.00 34.24 2.75
4642 7269 4.641989 ACTTGAACTTTGCATCACTGTCTT 59.358 37.500 0.00 0.00 0.00 3.01
4643 7270 4.202441 ACTTGAACTTTGCATCACTGTCT 58.798 39.130 0.00 0.00 0.00 3.41
4655 7282 9.376075 CACTCACATCATATCTACTTGAACTTT 57.624 33.333 0.00 0.00 0.00 2.66
4688 7315 8.731275 TCAATCTTGTCACTTTCACTTTCTTA 57.269 30.769 0.00 0.00 0.00 2.10
4697 7324 6.361748 GTGCTGAAATCAATCTTGTCACTTTC 59.638 38.462 0.00 0.00 0.00 2.62
4712 7339 4.752101 ACTGTACTTCACTGTGCTGAAATC 59.248 41.667 2.12 0.00 37.86 2.17
4719 7346 2.931320 GCCCTACTGTACTTCACTGTGC 60.931 54.545 2.12 0.00 39.42 4.57
4743 7370 0.750546 GATAAACCCCGGGGCTGTTC 60.751 60.000 40.67 26.18 39.32 3.18
4771 7401 9.498176 TTTGTGTCCTACTACTATTTCTTTTCC 57.502 33.333 0.00 0.00 0.00 3.13
4861 7506 2.335712 CGGGGTTGCAGCCTCTTTC 61.336 63.158 18.23 0.83 35.71 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.