Multiple sequence alignment - TraesCS4B01G253200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G253200 chr4B 100.000 7452 0 0 1 7452 519052734 519045283 0.000000e+00 13762.0
1 TraesCS4B01G253200 chr4D 95.087 5781 176 46 882 6596 422085710 422079972 0.000000e+00 9003.0
2 TraesCS4B01G253200 chr4D 83.061 490 60 15 43 513 308815305 308815790 2.490000e-114 424.0
3 TraesCS4B01G253200 chr4D 84.173 139 7 3 623 746 422234229 422234091 3.650000e-23 121.0
4 TraesCS4B01G253200 chr4D 97.561 41 1 0 881 921 422085646 422085606 3.730000e-08 71.3
5 TraesCS4B01G253200 chr3A 91.063 5718 373 58 874 6492 106440900 106435222 0.000000e+00 7601.0
6 TraesCS4B01G253200 chr3A 80.018 3253 497 88 1309 4480 610541331 610544511 0.000000e+00 2265.0
7 TraesCS4B01G253200 chr3A 98.032 864 16 1 6590 7452 693588520 693587657 0.000000e+00 1500.0
8 TraesCS4B01G253200 chr3A 97.090 859 25 0 6594 7452 11563259 11562401 0.000000e+00 1448.0
9 TraesCS4B01G253200 chr3A 80.512 508 77 18 5351 5849 610546203 610546697 3.280000e-98 370.0
10 TraesCS4B01G253200 chr3A 86.196 326 41 4 4534 4858 610545394 610545716 4.280000e-92 350.0
11 TraesCS4B01G253200 chr3D 91.074 5669 385 61 936 6527 89904001 89898377 0.000000e+00 7553.0
12 TraesCS4B01G253200 chr3D 80.564 3478 564 73 1068 4480 468758692 468762122 0.000000e+00 2575.0
13 TraesCS4B01G253200 chr3D 86.810 326 39 4 4534 4858 468762693 468763015 1.980000e-95 361.0
14 TraesCS4B01G253200 chr3D 80.440 455 45 28 101 522 591197464 591197021 2.610000e-79 307.0
15 TraesCS4B01G253200 chr3D 81.008 258 47 2 4910 5166 468763156 468763412 3.530000e-48 204.0
16 TraesCS4B01G253200 chr3B 90.925 5146 315 72 874 5903 139415495 139410386 0.000000e+00 6776.0
17 TraesCS4B01G253200 chr3B 80.225 3474 578 76 1068 4480 622394765 622398190 0.000000e+00 2508.0
18 TraesCS4B01G253200 chr3B 97.555 859 21 0 6594 7452 114829608 114828750 0.000000e+00 1471.0
19 TraesCS4B01G253200 chr3B 97.310 855 22 1 6599 7452 819565782 819564928 0.000000e+00 1450.0
20 TraesCS4B01G253200 chr3B 89.492 590 52 8 5940 6527 139410238 139409657 0.000000e+00 737.0
21 TraesCS4B01G253200 chr3B 84.824 369 51 5 5347 5712 622399488 622399854 4.250000e-97 366.0
22 TraesCS4B01G253200 chr3B 84.663 326 46 4 4534 4858 622398557 622398879 9.330000e-84 322.0
23 TraesCS4B01G253200 chr4A 97.066 3510 94 7 1836 5339 41970250 41973756 0.000000e+00 5903.0
24 TraesCS4B01G253200 chr4A 91.881 1281 58 19 5338 6596 41973840 41975096 0.000000e+00 1748.0
25 TraesCS4B01G253200 chr4A 97.780 856 16 1 6597 7452 711665570 711666422 0.000000e+00 1472.0
26 TraesCS4B01G253200 chr4A 92.415 1002 27 16 879 1843 41968092 41969081 0.000000e+00 1384.0
27 TraesCS4B01G253200 chr4A 82.530 332 32 13 214 523 384393969 384393642 1.230000e-67 268.0
28 TraesCS4B01G253200 chr2B 98.487 859 12 1 6594 7452 198067916 198068773 0.000000e+00 1513.0
29 TraesCS4B01G253200 chr2B 97.209 860 23 1 6593 7452 477326331 477327189 0.000000e+00 1454.0
30 TraesCS4B01G253200 chr2B 84.959 492 44 19 43 513 302083555 302083073 8.750000e-129 472.0
31 TraesCS4B01G253200 chr6D 85.113 1498 173 27 2776 4266 138806259 138804805 0.000000e+00 1485.0
32 TraesCS4B01G253200 chr6D 85.097 463 56 10 57 512 412007671 412008127 1.890000e-125 460.0
33 TraesCS4B01G253200 chr6D 84.599 474 47 18 59 510 262748676 262748207 1.470000e-121 448.0
34 TraesCS4B01G253200 chr2A 97.561 861 20 1 6593 7452 629998091 629997231 0.000000e+00 1472.0
35 TraesCS4B01G253200 chr5B 97.445 861 22 0 6592 7452 430665518 430666378 0.000000e+00 1469.0
36 TraesCS4B01G253200 chr6B 85.864 955 110 17 3389 4336 714810221 714811157 0.000000e+00 992.0
37 TraesCS4B01G253200 chr1A 84.774 486 50 13 57 521 251008342 251008824 4.070000e-127 466.0
38 TraesCS4B01G253200 chr1A 82.938 422 57 13 95 506 63873792 63873376 4.250000e-97 366.0
39 TraesCS4B01G253200 chr5A 84.114 491 50 15 57 522 338390683 338390196 4.100000e-122 449.0
40 TraesCS4B01G253200 chr2D 82.440 541 67 14 1 523 29505390 29504860 1.470000e-121 448.0
41 TraesCS4B01G253200 chr2D 82.172 488 54 17 64 522 248779007 248778524 9.070000e-104 388.0
42 TraesCS4B01G253200 chr6A 84.355 473 53 12 57 513 433972720 433972253 1.910000e-120 444.0
43 TraesCS4B01G253200 chr6A 83.000 500 60 14 43 522 25765761 25765267 5.340000e-116 429.0
44 TraesCS4B01G253200 chr5D 83.441 465 60 15 57 510 435221048 435221506 4.160000e-112 416.0
45 TraesCS4B01G253200 chr7D 81.938 454 56 14 95 523 280602579 280603031 1.980000e-95 361.0
46 TraesCS4B01G253200 chr1B 81.481 405 57 15 113 510 652283566 652283173 4.340000e-82 316.0
47 TraesCS4B01G253200 chr1D 85.650 223 31 1 1417 1638 3173714 3173936 4.500000e-57 233.0
48 TraesCS4B01G253200 chr1D 95.122 41 2 0 5986 6026 490119714 490119754 1.740000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G253200 chr4B 519045283 519052734 7451 True 13762.000000 13762 100.000000 1 7452 1 chr4B.!!$R1 7451
1 TraesCS4B01G253200 chr4D 422079972 422085710 5738 True 4537.150000 9003 96.324000 881 6596 2 chr4D.!!$R2 5715
2 TraesCS4B01G253200 chr3A 106435222 106440900 5678 True 7601.000000 7601 91.063000 874 6492 1 chr3A.!!$R2 5618
3 TraesCS4B01G253200 chr3A 693587657 693588520 863 True 1500.000000 1500 98.032000 6590 7452 1 chr3A.!!$R3 862
4 TraesCS4B01G253200 chr3A 11562401 11563259 858 True 1448.000000 1448 97.090000 6594 7452 1 chr3A.!!$R1 858
5 TraesCS4B01G253200 chr3A 610541331 610546697 5366 False 995.000000 2265 82.242000 1309 5849 3 chr3A.!!$F1 4540
6 TraesCS4B01G253200 chr3D 89898377 89904001 5624 True 7553.000000 7553 91.074000 936 6527 1 chr3D.!!$R1 5591
7 TraesCS4B01G253200 chr3D 468758692 468763412 4720 False 1046.666667 2575 82.794000 1068 5166 3 chr3D.!!$F1 4098
8 TraesCS4B01G253200 chr3B 139409657 139415495 5838 True 3756.500000 6776 90.208500 874 6527 2 chr3B.!!$R3 5653
9 TraesCS4B01G253200 chr3B 114828750 114829608 858 True 1471.000000 1471 97.555000 6594 7452 1 chr3B.!!$R1 858
10 TraesCS4B01G253200 chr3B 819564928 819565782 854 True 1450.000000 1450 97.310000 6599 7452 1 chr3B.!!$R2 853
11 TraesCS4B01G253200 chr3B 622394765 622399854 5089 False 1065.333333 2508 83.237333 1068 5712 3 chr3B.!!$F1 4644
12 TraesCS4B01G253200 chr4A 41968092 41975096 7004 False 3011.666667 5903 93.787333 879 6596 3 chr4A.!!$F2 5717
13 TraesCS4B01G253200 chr4A 711665570 711666422 852 False 1472.000000 1472 97.780000 6597 7452 1 chr4A.!!$F1 855
14 TraesCS4B01G253200 chr2B 198067916 198068773 857 False 1513.000000 1513 98.487000 6594 7452 1 chr2B.!!$F1 858
15 TraesCS4B01G253200 chr2B 477326331 477327189 858 False 1454.000000 1454 97.209000 6593 7452 1 chr2B.!!$F2 859
16 TraesCS4B01G253200 chr6D 138804805 138806259 1454 True 1485.000000 1485 85.113000 2776 4266 1 chr6D.!!$R1 1490
17 TraesCS4B01G253200 chr2A 629997231 629998091 860 True 1472.000000 1472 97.561000 6593 7452 1 chr2A.!!$R1 859
18 TraesCS4B01G253200 chr5B 430665518 430666378 860 False 1469.000000 1469 97.445000 6592 7452 1 chr5B.!!$F1 860
19 TraesCS4B01G253200 chr6B 714810221 714811157 936 False 992.000000 992 85.864000 3389 4336 1 chr6B.!!$F1 947
20 TraesCS4B01G253200 chr2D 29504860 29505390 530 True 448.000000 448 82.440000 1 523 1 chr2D.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 763 0.030235 CGACGACGGCCAAGATATCA 59.970 55.000 2.24 0.00 35.72 2.15 F
764 765 0.104304 ACGACGGCCAAGATATCACC 59.896 55.000 2.24 0.01 0.00 4.02 F
1275 1328 0.107993 TCGTCTCGTGGTACCTCGAT 60.108 55.000 32.41 0.00 40.37 3.59 F
1714 1803 2.367377 CCTGGATGAGCCCCCTGA 60.367 66.667 0.00 0.00 34.97 3.86 F
2499 3767 2.608623 CAGGGGTGGGAAATGAAGTTT 58.391 47.619 0.00 0.00 0.00 2.66 F
3498 4803 2.033141 TTCCTGCCTGCAGCTGAC 59.967 61.111 20.43 9.67 42.76 3.51 F
4963 7365 0.811616 CAGGTATTGCTGGTCTCGCC 60.812 60.000 0.00 0.00 37.90 5.54 F
6234 9011 0.965866 TGGTCTTGCTCCTCGACGAT 60.966 55.000 0.00 0.00 0.00 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 3392 0.250424 TCTGGTACACGACGGAGACA 60.250 55.000 0.00 0.0 0.00 3.41 R
2346 3614 0.317799 TTGCAAGCATGACCGCAATT 59.682 45.000 10.82 0.0 39.32 2.32 R
2513 3781 0.605589 CTCTGTGGTCCTGAGGTCAC 59.394 60.000 16.50 16.5 35.95 3.67 R
3024 4305 1.000274 GCCATTGTTCCGCAAGTCTTT 60.000 47.619 0.00 0.0 40.86 2.52 R
3615 4954 1.068610 TCGTTGTATTTGCCTGCTTGC 60.069 47.619 0.00 0.0 0.00 4.01 R
4989 7391 0.664166 GACAACCCATGCTTGCAACG 60.664 55.000 0.00 0.0 0.00 4.10 R
6263 9040 1.846007 ATTAACAAGGCCCGATTGCA 58.154 45.000 0.00 0.0 0.00 4.08 R
7112 9908 7.465245 CGGTTGTAACAAAATGCAAAGAATTGT 60.465 33.333 0.00 0.0 38.85 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.568732 TTAATGACTCAAATTTTTCGTGAACC 57.431 30.769 0.00 0.00 0.00 3.62
36 37 5.568685 TGACTCAAATTTTTCGTGAACCA 57.431 34.783 0.00 0.00 0.00 3.67
37 38 5.955488 TGACTCAAATTTTTCGTGAACCAA 58.045 33.333 0.00 0.00 0.00 3.67
38 39 6.390721 TGACTCAAATTTTTCGTGAACCAAA 58.609 32.000 0.00 0.00 0.00 3.28
39 40 6.868864 TGACTCAAATTTTTCGTGAACCAAAA 59.131 30.769 0.00 0.00 0.00 2.44
40 41 7.385205 TGACTCAAATTTTTCGTGAACCAAAAA 59.615 29.630 2.00 2.00 36.25 1.94
61 62 7.826260 AAAAATAAAATTGCGAGGGTACATG 57.174 32.000 0.00 0.00 0.00 3.21
62 63 2.939460 AAAATTGCGAGGGTACATGC 57.061 45.000 0.00 0.00 0.00 4.06
63 64 1.832883 AAATTGCGAGGGTACATGCA 58.167 45.000 0.00 0.00 35.15 3.96
64 65 1.094785 AATTGCGAGGGTACATGCAC 58.905 50.000 0.00 0.00 37.01 4.57
65 66 0.253044 ATTGCGAGGGTACATGCACT 59.747 50.000 0.00 0.00 37.01 4.40
66 67 0.899019 TTGCGAGGGTACATGCACTA 59.101 50.000 0.00 0.00 37.01 2.74
67 68 0.899019 TGCGAGGGTACATGCACTAA 59.101 50.000 0.00 0.00 31.31 2.24
68 69 1.276705 TGCGAGGGTACATGCACTAAA 59.723 47.619 0.00 0.00 31.31 1.85
69 70 2.289756 TGCGAGGGTACATGCACTAAAA 60.290 45.455 0.00 0.00 31.31 1.52
70 71 2.943033 GCGAGGGTACATGCACTAAAAT 59.057 45.455 0.00 0.00 0.00 1.82
71 72 3.377172 GCGAGGGTACATGCACTAAAATT 59.623 43.478 0.00 0.00 0.00 1.82
72 73 4.142469 GCGAGGGTACATGCACTAAAATTT 60.142 41.667 0.00 0.00 0.00 1.82
73 74 5.331902 CGAGGGTACATGCACTAAAATTTG 58.668 41.667 0.00 0.00 0.00 2.32
74 75 5.072040 AGGGTACATGCACTAAAATTTGC 57.928 39.130 0.00 0.00 39.33 3.68
75 76 4.081697 AGGGTACATGCACTAAAATTTGCC 60.082 41.667 0.00 0.00 38.00 4.52
76 77 4.180817 GGTACATGCACTAAAATTTGCCC 58.819 43.478 0.00 0.00 38.00 5.36
77 78 4.081697 GGTACATGCACTAAAATTTGCCCT 60.082 41.667 0.00 0.00 38.00 5.19
78 79 3.929094 ACATGCACTAAAATTTGCCCTG 58.071 40.909 0.00 0.00 38.00 4.45
79 80 2.453983 TGCACTAAAATTTGCCCTGC 57.546 45.000 0.00 0.00 38.00 4.85
80 81 1.969923 TGCACTAAAATTTGCCCTGCT 59.030 42.857 0.00 0.00 38.00 4.24
81 82 2.368221 TGCACTAAAATTTGCCCTGCTT 59.632 40.909 0.00 0.00 38.00 3.91
82 83 2.995939 GCACTAAAATTTGCCCTGCTTC 59.004 45.455 0.00 0.00 32.21 3.86
83 84 3.554752 GCACTAAAATTTGCCCTGCTTCA 60.555 43.478 0.00 0.00 32.21 3.02
84 85 3.989817 CACTAAAATTTGCCCTGCTTCAC 59.010 43.478 0.00 0.00 0.00 3.18
85 86 3.640967 ACTAAAATTTGCCCTGCTTCACA 59.359 39.130 0.00 0.00 0.00 3.58
86 87 2.531522 AAATTTGCCCTGCTTCACAC 57.468 45.000 0.00 0.00 0.00 3.82
87 88 1.412079 AATTTGCCCTGCTTCACACA 58.588 45.000 0.00 0.00 0.00 3.72
88 89 1.412079 ATTTGCCCTGCTTCACACAA 58.588 45.000 0.00 0.00 0.00 3.33
89 90 1.189752 TTTGCCCTGCTTCACACAAA 58.810 45.000 0.00 0.00 0.00 2.83
90 91 1.189752 TTGCCCTGCTTCACACAAAA 58.810 45.000 0.00 0.00 0.00 2.44
91 92 1.189752 TGCCCTGCTTCACACAAAAA 58.810 45.000 0.00 0.00 0.00 1.94
123 124 8.770438 TTCATGGTCAAAATACTAAAATTGCC 57.230 30.769 0.00 0.00 0.00 4.52
128 129 8.538701 TGGTCAAAATACTAAAATTGCCATGAT 58.461 29.630 0.00 0.00 29.95 2.45
130 131 9.807649 GTCAAAATACTAAAATTGCCATGATCT 57.192 29.630 0.00 0.00 0.00 2.75
145 146 9.748708 TTGCCATGATCTATAAACTAAATTTGC 57.251 29.630 0.00 0.00 0.00 3.68
146 147 8.359642 TGCCATGATCTATAAACTAAATTTGCC 58.640 33.333 0.00 0.00 0.00 4.52
147 148 8.359642 GCCATGATCTATAAACTAAATTTGCCA 58.640 33.333 0.00 0.00 0.00 4.92
214 215 8.658171 TTTCGTGGTTAATTACTAAAAATCGC 57.342 30.769 0.00 0.00 0.00 4.58
215 216 6.774084 TCGTGGTTAATTACTAAAAATCGCC 58.226 36.000 0.00 0.00 0.00 5.54
216 217 6.370994 TCGTGGTTAATTACTAAAAATCGCCA 59.629 34.615 0.00 0.00 0.00 5.69
217 218 7.066043 TCGTGGTTAATTACTAAAAATCGCCAT 59.934 33.333 0.00 0.00 0.00 4.40
218 219 7.165154 CGTGGTTAATTACTAAAAATCGCCATG 59.835 37.037 0.00 0.00 0.00 3.66
219 220 7.434013 GTGGTTAATTACTAAAAATCGCCATGG 59.566 37.037 7.63 7.63 0.00 3.66
220 221 7.122948 TGGTTAATTACTAAAAATCGCCATGGT 59.877 33.333 14.67 0.00 0.00 3.55
221 222 7.646526 GGTTAATTACTAAAAATCGCCATGGTC 59.353 37.037 14.67 4.79 0.00 4.02
222 223 6.767524 AATTACTAAAAATCGCCATGGTCA 57.232 33.333 14.67 0.00 0.00 4.02
223 224 6.767524 ATTACTAAAAATCGCCATGGTCAA 57.232 33.333 14.67 0.00 0.00 3.18
224 225 6.767524 TTACTAAAAATCGCCATGGTCAAT 57.232 33.333 14.67 1.58 0.00 2.57
225 226 5.659440 ACTAAAAATCGCCATGGTCAATT 57.341 34.783 14.67 7.99 0.00 2.32
226 227 5.650543 ACTAAAAATCGCCATGGTCAATTC 58.349 37.500 14.67 0.00 0.00 2.17
227 228 4.533919 AAAAATCGCCATGGTCAATTCA 57.466 36.364 14.67 0.00 0.00 2.57
228 229 4.533919 AAAATCGCCATGGTCAATTCAA 57.466 36.364 14.67 0.00 0.00 2.69
229 230 4.533919 AAATCGCCATGGTCAATTCAAA 57.466 36.364 14.67 0.00 0.00 2.69
230 231 4.533919 AATCGCCATGGTCAATTCAAAA 57.466 36.364 14.67 0.00 0.00 2.44
231 232 4.533919 ATCGCCATGGTCAATTCAAAAA 57.466 36.364 14.67 0.00 0.00 1.94
254 255 9.857957 AAAAATTTACCGTGAAAAGTAGTTGAA 57.142 25.926 0.00 0.00 0.00 2.69
255 256 9.857957 AAAATTTACCGTGAAAAGTAGTTGAAA 57.142 25.926 0.00 0.00 0.00 2.69
259 260 8.659925 TTACCGTGAAAAGTAGTTGAAATACA 57.340 30.769 5.56 0.00 0.00 2.29
260 261 7.556733 ACCGTGAAAAGTAGTTGAAATACAA 57.443 32.000 5.56 0.00 36.02 2.41
261 262 8.161699 ACCGTGAAAAGTAGTTGAAATACAAT 57.838 30.769 5.56 0.00 40.76 2.71
262 263 8.073768 ACCGTGAAAAGTAGTTGAAATACAATG 58.926 33.333 5.56 0.00 40.76 2.82
263 264 8.286800 CCGTGAAAAGTAGTTGAAATACAATGA 58.713 33.333 5.56 0.00 40.76 2.57
264 265 9.825972 CGTGAAAAGTAGTTGAAATACAATGAT 57.174 29.630 5.56 0.00 40.76 2.45
328 329 7.822658 TGTCAACTTTATGGTAAAACTATGGC 58.177 34.615 0.00 0.00 0.00 4.40
329 330 7.448777 TGTCAACTTTATGGTAAAACTATGGCA 59.551 33.333 0.00 0.00 0.00 4.92
330 331 8.301002 GTCAACTTTATGGTAAAACTATGGCAA 58.699 33.333 0.00 0.00 0.00 4.52
331 332 8.301002 TCAACTTTATGGTAAAACTATGGCAAC 58.699 33.333 0.00 0.00 0.00 4.17
332 333 8.303876 CAACTTTATGGTAAAACTATGGCAACT 58.696 33.333 0.00 0.00 37.61 3.16
333 334 8.417273 ACTTTATGGTAAAACTATGGCAACTT 57.583 30.769 0.00 0.00 37.61 2.66
334 335 8.520351 ACTTTATGGTAAAACTATGGCAACTTC 58.480 33.333 0.00 0.00 37.61 3.01
335 336 8.410673 TTTATGGTAAAACTATGGCAACTTCA 57.589 30.769 0.00 0.00 37.61 3.02
336 337 6.909550 ATGGTAAAACTATGGCAACTTCAA 57.090 33.333 0.00 0.00 37.61 2.69
337 338 6.909550 TGGTAAAACTATGGCAACTTCAAT 57.090 33.333 0.00 0.00 37.61 2.57
338 339 6.686630 TGGTAAAACTATGGCAACTTCAATG 58.313 36.000 0.00 0.00 37.61 2.82
339 340 6.266558 TGGTAAAACTATGGCAACTTCAATGT 59.733 34.615 0.00 0.00 37.61 2.71
340 341 7.448777 TGGTAAAACTATGGCAACTTCAATGTA 59.551 33.333 0.00 0.00 37.61 2.29
341 342 8.301002 GGTAAAACTATGGCAACTTCAATGTAA 58.699 33.333 0.00 0.00 37.61 2.41
342 343 9.124807 GTAAAACTATGGCAACTTCAATGTAAC 57.875 33.333 0.00 0.00 37.61 2.50
343 344 6.892658 AACTATGGCAACTTCAATGTAACA 57.107 33.333 0.00 0.00 37.61 2.41
344 345 7.466746 AACTATGGCAACTTCAATGTAACAT 57.533 32.000 0.00 0.00 37.61 2.71
345 346 7.088589 ACTATGGCAACTTCAATGTAACATC 57.911 36.000 0.00 0.00 37.61 3.06
346 347 5.981088 ATGGCAACTTCAATGTAACATCA 57.019 34.783 0.00 0.00 37.61 3.07
347 348 5.981088 TGGCAACTTCAATGTAACATCAT 57.019 34.783 0.00 0.00 37.61 2.45
348 349 5.712004 TGGCAACTTCAATGTAACATCATG 58.288 37.500 0.00 0.00 37.61 3.07
349 350 5.243507 TGGCAACTTCAATGTAACATCATGT 59.756 36.000 0.00 0.00 37.61 3.21
350 351 5.801947 GGCAACTTCAATGTAACATCATGTC 59.198 40.000 0.00 0.00 0.00 3.06
351 352 6.380995 GCAACTTCAATGTAACATCATGTCA 58.619 36.000 0.00 0.00 0.00 3.58
352 353 6.862608 GCAACTTCAATGTAACATCATGTCAA 59.137 34.615 0.00 0.00 0.00 3.18
353 354 7.148918 GCAACTTCAATGTAACATCATGTCAAC 60.149 37.037 0.00 0.00 0.00 3.18
354 355 7.750229 ACTTCAATGTAACATCATGTCAACT 57.250 32.000 0.00 0.00 0.00 3.16
355 356 8.169977 ACTTCAATGTAACATCATGTCAACTT 57.830 30.769 0.00 0.00 0.00 2.66
356 357 8.632679 ACTTCAATGTAACATCATGTCAACTTT 58.367 29.630 0.00 0.00 0.00 2.66
357 358 9.467258 CTTCAATGTAACATCATGTCAACTTTT 57.533 29.630 0.00 0.00 0.00 2.27
358 359 8.800231 TCAATGTAACATCATGTCAACTTTTG 57.200 30.769 0.00 2.76 0.00 2.44
359 360 8.628280 TCAATGTAACATCATGTCAACTTTTGA 58.372 29.630 12.81 12.81 37.33 2.69
360 361 9.247126 CAATGTAACATCATGTCAACTTTTGAA 57.753 29.630 0.00 0.00 42.15 2.69
361 362 8.801715 ATGTAACATCATGTCAACTTTTGAAC 57.198 30.769 0.00 0.00 42.15 3.18
362 363 7.766283 TGTAACATCATGTCAACTTTTGAACA 58.234 30.769 0.00 0.00 42.15 3.18
363 364 8.246871 TGTAACATCATGTCAACTTTTGAACAA 58.753 29.630 0.00 0.00 42.15 2.83
364 365 9.081997 GTAACATCATGTCAACTTTTGAACAAA 57.918 29.630 0.00 0.00 42.15 2.83
365 366 8.545229 AACATCATGTCAACTTTTGAACAAAA 57.455 26.923 11.35 11.35 42.15 2.44
366 367 8.545229 ACATCATGTCAACTTTTGAACAAAAA 57.455 26.923 12.61 0.00 42.15 1.94
431 432 9.910267 TCTCTTCAAGATGGATTTAATGATGAA 57.090 29.630 0.00 0.00 0.00 2.57
508 509 5.633830 AAAAATCGCTGATGTCATCTGTT 57.366 34.783 17.91 5.29 0.00 3.16
509 510 5.633830 AAAATCGCTGATGTCATCTGTTT 57.366 34.783 17.91 9.96 0.00 2.83
510 511 4.611310 AATCGCTGATGTCATCTGTTTG 57.389 40.909 17.91 10.39 0.00 2.93
511 512 3.317603 TCGCTGATGTCATCTGTTTGA 57.682 42.857 17.91 12.05 0.00 2.69
512 513 3.865446 TCGCTGATGTCATCTGTTTGAT 58.135 40.909 17.91 0.00 35.40 2.57
513 514 5.009854 TCGCTGATGTCATCTGTTTGATA 57.990 39.130 17.91 0.00 33.36 2.15
514 515 5.045872 TCGCTGATGTCATCTGTTTGATAG 58.954 41.667 17.91 5.22 33.36 2.08
515 516 4.807834 CGCTGATGTCATCTGTTTGATAGT 59.192 41.667 17.91 0.00 33.36 2.12
516 517 5.051173 CGCTGATGTCATCTGTTTGATAGTC 60.051 44.000 17.91 1.48 33.36 2.59
517 518 5.814188 GCTGATGTCATCTGTTTGATAGTCA 59.186 40.000 17.91 0.00 33.36 3.41
518 519 6.314648 GCTGATGTCATCTGTTTGATAGTCAA 59.685 38.462 17.91 0.00 34.03 3.18
519 520 7.148356 GCTGATGTCATCTGTTTGATAGTCAAA 60.148 37.037 17.91 1.24 43.37 2.69
520 521 8.620116 TGATGTCATCTGTTTGATAGTCAAAA 57.380 30.769 13.90 0.00 46.53 2.44
521 522 9.234827 TGATGTCATCTGTTTGATAGTCAAAAT 57.765 29.630 13.90 0.00 46.53 1.82
534 535 9.970395 TTGATAGTCAAAATATTTGGATCATGC 57.030 29.630 8.52 0.00 32.71 4.06
535 536 9.358406 TGATAGTCAAAATATTTGGATCATGCT 57.642 29.630 8.52 3.71 0.00 3.79
538 539 8.712285 AGTCAAAATATTTGGATCATGCTTTG 57.288 30.769 8.52 0.00 0.00 2.77
539 540 8.316214 AGTCAAAATATTTGGATCATGCTTTGT 58.684 29.630 8.52 0.00 0.00 2.83
540 541 8.385111 GTCAAAATATTTGGATCATGCTTTGTG 58.615 33.333 8.52 0.00 0.00 3.33
541 542 8.095792 TCAAAATATTTGGATCATGCTTTGTGT 58.904 29.630 0.39 0.00 0.00 3.72
542 543 8.385111 CAAAATATTTGGATCATGCTTTGTGTC 58.615 33.333 0.39 0.00 0.00 3.67
543 544 6.778834 ATATTTGGATCATGCTTTGTGTCA 57.221 33.333 0.00 0.00 0.00 3.58
544 545 3.921119 TTGGATCATGCTTTGTGTCAC 57.079 42.857 0.00 0.00 0.00 3.67
545 546 2.861274 TGGATCATGCTTTGTGTCACA 58.139 42.857 0.18 0.18 0.00 3.58
546 547 2.553602 TGGATCATGCTTTGTGTCACAC 59.446 45.455 4.80 0.00 34.56 3.82
547 548 2.413239 GGATCATGCTTTGTGTCACACG 60.413 50.000 4.80 1.03 37.14 4.49
548 549 1.662517 TCATGCTTTGTGTCACACGT 58.337 45.000 4.80 0.00 37.14 4.49
549 550 1.330213 TCATGCTTTGTGTCACACGTG 59.670 47.619 15.48 15.48 37.14 4.49
550 551 1.063912 CATGCTTTGTGTCACACGTGT 59.936 47.619 17.22 17.22 37.14 4.49
551 552 0.445829 TGCTTTGTGTCACACGTGTG 59.554 50.000 37.04 37.04 46.91 3.82
565 566 5.873179 ACACGTGTGACCCTTATTATTTG 57.127 39.130 22.71 0.00 0.00 2.32
566 567 4.698304 ACACGTGTGACCCTTATTATTTGG 59.302 41.667 22.71 0.00 0.00 3.28
567 568 4.095782 CACGTGTGACCCTTATTATTTGGG 59.904 45.833 7.58 0.00 46.07 4.12
568 569 4.019141 ACGTGTGACCCTTATTATTTGGGA 60.019 41.667 4.11 0.00 43.47 4.37
569 570 4.944930 CGTGTGACCCTTATTATTTGGGAA 59.055 41.667 4.11 0.00 43.47 3.97
570 571 5.416326 CGTGTGACCCTTATTATTTGGGAAA 59.584 40.000 4.11 0.00 43.47 3.13
571 572 6.071840 CGTGTGACCCTTATTATTTGGGAAAA 60.072 38.462 4.11 0.00 43.47 2.29
572 573 7.363443 CGTGTGACCCTTATTATTTGGGAAAAT 60.363 37.037 4.11 0.00 43.47 1.82
573 574 8.973182 GTGTGACCCTTATTATTTGGGAAAATA 58.027 33.333 4.11 0.00 43.47 1.40
574 575 9.722317 TGTGACCCTTATTATTTGGGAAAATAT 57.278 29.630 4.11 0.00 43.47 1.28
587 588 8.831715 TTTGGGAAAATATTTGAGAGAAAAGC 57.168 30.769 0.39 0.00 0.00 3.51
588 589 7.537596 TGGGAAAATATTTGAGAGAAAAGCA 57.462 32.000 0.39 0.00 0.00 3.91
589 590 8.137745 TGGGAAAATATTTGAGAGAAAAGCAT 57.862 30.769 0.39 0.00 0.00 3.79
590 591 8.036575 TGGGAAAATATTTGAGAGAAAAGCATG 58.963 33.333 0.39 0.00 0.00 4.06
591 592 8.253113 GGGAAAATATTTGAGAGAAAAGCATGA 58.747 33.333 0.39 0.00 0.00 3.07
592 593 9.080915 GGAAAATATTTGAGAGAAAAGCATGAC 57.919 33.333 0.39 0.00 0.00 3.06
593 594 9.852091 GAAAATATTTGAGAGAAAAGCATGACT 57.148 29.630 0.39 0.00 0.00 3.41
609 610 9.696917 AAAGCATGACTTTAAACTTCCAAATAG 57.303 29.630 11.76 0.00 46.95 1.73
610 611 8.635765 AGCATGACTTTAAACTTCCAAATAGA 57.364 30.769 0.00 0.00 0.00 1.98
611 612 9.077885 AGCATGACTTTAAACTTCCAAATAGAA 57.922 29.630 0.00 0.00 0.00 2.10
619 620 6.765915 AAACTTCCAAATAGAAGATCAGGC 57.234 37.500 8.21 0.00 45.08 4.85
620 621 5.707066 ACTTCCAAATAGAAGATCAGGCT 57.293 39.130 8.21 0.00 45.08 4.58
621 622 5.435291 ACTTCCAAATAGAAGATCAGGCTG 58.565 41.667 8.58 8.58 45.08 4.85
622 623 5.190528 ACTTCCAAATAGAAGATCAGGCTGA 59.809 40.000 21.19 21.19 45.08 4.26
623 624 5.698741 TCCAAATAGAAGATCAGGCTGAA 57.301 39.130 22.84 3.72 0.00 3.02
624 625 6.065976 TCCAAATAGAAGATCAGGCTGAAA 57.934 37.500 22.84 0.00 0.00 2.69
625 626 6.666678 TCCAAATAGAAGATCAGGCTGAAAT 58.333 36.000 22.84 10.23 0.00 2.17
626 627 6.544931 TCCAAATAGAAGATCAGGCTGAAATG 59.455 38.462 22.84 7.42 0.00 2.32
627 628 6.207213 CAAATAGAAGATCAGGCTGAAATGC 58.793 40.000 22.84 11.62 0.00 3.56
636 637 2.662006 GGCTGAAATGCCCTTCTTTC 57.338 50.000 0.00 0.00 46.82 2.62
637 638 1.895131 GGCTGAAATGCCCTTCTTTCA 59.105 47.619 0.00 0.00 46.82 2.69
638 639 2.299867 GGCTGAAATGCCCTTCTTTCAA 59.700 45.455 0.00 0.00 46.82 2.69
639 640 3.244181 GGCTGAAATGCCCTTCTTTCAAA 60.244 43.478 0.00 0.00 46.82 2.69
640 641 3.742882 GCTGAAATGCCCTTCTTTCAAAC 59.257 43.478 0.00 0.00 39.97 2.93
641 642 4.740334 GCTGAAATGCCCTTCTTTCAAACA 60.740 41.667 0.00 0.00 39.97 2.83
642 643 5.350504 TGAAATGCCCTTCTTTCAAACAA 57.649 34.783 0.00 0.00 38.17 2.83
643 644 5.115480 TGAAATGCCCTTCTTTCAAACAAC 58.885 37.500 0.00 0.00 38.17 3.32
644 645 4.751767 AATGCCCTTCTTTCAAACAACA 57.248 36.364 0.00 0.00 0.00 3.33
645 646 4.961438 ATGCCCTTCTTTCAAACAACAT 57.039 36.364 0.00 0.00 0.00 2.71
646 647 4.057406 TGCCCTTCTTTCAAACAACATG 57.943 40.909 0.00 0.00 0.00 3.21
647 648 2.802247 GCCCTTCTTTCAAACAACATGC 59.198 45.455 0.00 0.00 0.00 4.06
648 649 3.740764 GCCCTTCTTTCAAACAACATGCA 60.741 43.478 0.00 0.00 0.00 3.96
649 650 3.803778 CCCTTCTTTCAAACAACATGCAC 59.196 43.478 0.00 0.00 0.00 4.57
650 651 3.486841 CCTTCTTTCAAACAACATGCACG 59.513 43.478 0.00 0.00 0.00 5.34
651 652 4.350346 CTTCTTTCAAACAACATGCACGA 58.650 39.130 0.00 0.00 0.00 4.35
652 653 3.690422 TCTTTCAAACAACATGCACGAC 58.310 40.909 0.00 0.00 0.00 4.34
653 654 3.127721 TCTTTCAAACAACATGCACGACA 59.872 39.130 0.00 0.00 0.00 4.35
654 655 3.494045 TTCAAACAACATGCACGACAA 57.506 38.095 0.00 0.00 0.00 3.18
655 656 3.706802 TCAAACAACATGCACGACAAT 57.293 38.095 0.00 0.00 0.00 2.71
656 657 4.039151 TCAAACAACATGCACGACAATT 57.961 36.364 0.00 0.00 0.00 2.32
657 658 3.795639 TCAAACAACATGCACGACAATTG 59.204 39.130 3.24 3.24 35.54 2.32
658 659 1.769733 ACAACATGCACGACAATTGC 58.230 45.000 5.05 0.00 40.63 3.56
659 660 1.337703 ACAACATGCACGACAATTGCT 59.662 42.857 5.05 0.00 40.86 3.91
660 661 1.717113 CAACATGCACGACAATTGCTG 59.283 47.619 5.05 0.17 40.86 4.41
661 662 0.953727 ACATGCACGACAATTGCTGT 59.046 45.000 5.05 0.89 42.61 4.40
662 663 1.333115 CATGCACGACAATTGCTGTG 58.667 50.000 20.56 20.56 38.84 3.66
663 664 1.069091 CATGCACGACAATTGCTGTGA 60.069 47.619 26.16 15.43 38.84 3.58
664 665 1.237533 TGCACGACAATTGCTGTGAT 58.762 45.000 26.16 0.00 38.84 3.06
665 666 1.608109 TGCACGACAATTGCTGTGATT 59.392 42.857 26.16 0.00 38.84 2.57
666 667 2.034432 TGCACGACAATTGCTGTGATTT 59.966 40.909 26.16 0.00 38.84 2.17
667 668 3.052036 GCACGACAATTGCTGTGATTTT 58.948 40.909 26.16 0.00 38.84 1.82
668 669 3.490526 GCACGACAATTGCTGTGATTTTT 59.509 39.130 26.16 0.00 38.84 1.94
669 670 4.606673 GCACGACAATTGCTGTGATTTTTG 60.607 41.667 26.16 4.26 38.84 2.44
670 671 4.050553 ACGACAATTGCTGTGATTTTTGG 58.949 39.130 5.05 0.00 38.84 3.28
671 672 3.429543 CGACAATTGCTGTGATTTTTGGG 59.570 43.478 5.05 0.00 38.84 4.12
672 673 4.379652 GACAATTGCTGTGATTTTTGGGT 58.620 39.130 5.05 0.00 38.84 4.51
673 674 4.379652 ACAATTGCTGTGATTTTTGGGTC 58.620 39.130 5.05 0.00 36.69 4.46
674 675 4.141756 ACAATTGCTGTGATTTTTGGGTCA 60.142 37.500 5.05 0.00 36.69 4.02
675 676 4.686191 ATTGCTGTGATTTTTGGGTCAA 57.314 36.364 0.00 0.00 0.00 3.18
676 677 3.451141 TGCTGTGATTTTTGGGTCAAC 57.549 42.857 0.00 0.00 0.00 3.18
677 678 3.030291 TGCTGTGATTTTTGGGTCAACT 58.970 40.909 0.00 0.00 0.00 3.16
678 679 3.181477 TGCTGTGATTTTTGGGTCAACTG 60.181 43.478 0.00 0.00 0.00 3.16
679 680 3.068024 GCTGTGATTTTTGGGTCAACTGA 59.932 43.478 0.00 0.00 0.00 3.41
680 681 4.794003 GCTGTGATTTTTGGGTCAACTGAG 60.794 45.833 0.00 0.00 0.00 3.35
681 682 3.068024 TGTGATTTTTGGGTCAACTGAGC 59.932 43.478 0.15 0.15 41.50 4.26
682 683 3.068024 GTGATTTTTGGGTCAACTGAGCA 59.932 43.478 10.79 0.00 43.82 4.26
683 684 3.068024 TGATTTTTGGGTCAACTGAGCAC 59.932 43.478 10.79 1.77 43.82 4.40
684 685 2.136298 TTTTGGGTCAACTGAGCACA 57.864 45.000 10.79 4.12 43.82 4.57
685 686 2.136298 TTTGGGTCAACTGAGCACAA 57.864 45.000 10.79 9.20 43.82 3.33
686 687 2.363306 TTGGGTCAACTGAGCACAAT 57.637 45.000 10.79 0.00 43.82 2.71
687 688 1.608055 TGGGTCAACTGAGCACAATG 58.392 50.000 10.79 0.00 43.82 2.82
688 689 0.883833 GGGTCAACTGAGCACAATGG 59.116 55.000 10.79 0.00 43.82 3.16
689 690 0.242017 GGTCAACTGAGCACAATGGC 59.758 55.000 4.07 0.00 41.81 4.40
691 692 2.426522 GTCAACTGAGCACAATGGCTA 58.573 47.619 0.00 0.00 45.99 3.93
692 693 2.417933 GTCAACTGAGCACAATGGCTAG 59.582 50.000 0.00 0.00 45.99 3.42
693 694 1.131883 CAACTGAGCACAATGGCTAGC 59.868 52.381 6.04 6.04 45.99 3.42
694 695 0.742281 ACTGAGCACAATGGCTAGCG 60.742 55.000 9.00 0.00 45.99 4.26
695 696 0.460811 CTGAGCACAATGGCTAGCGA 60.461 55.000 9.00 4.95 45.99 4.93
696 697 0.460811 TGAGCACAATGGCTAGCGAG 60.461 55.000 9.00 0.63 45.99 5.03
697 698 1.153289 AGCACAATGGCTAGCGAGG 60.153 57.895 9.00 4.13 43.70 4.63
698 699 1.153369 GCACAATGGCTAGCGAGGA 60.153 57.895 9.00 0.00 0.00 3.71
699 700 0.744414 GCACAATGGCTAGCGAGGAA 60.744 55.000 9.00 0.00 0.00 3.36
700 701 1.959042 CACAATGGCTAGCGAGGAAT 58.041 50.000 9.00 0.00 0.00 3.01
701 702 2.292267 CACAATGGCTAGCGAGGAATT 58.708 47.619 9.00 0.85 0.00 2.17
702 703 2.289002 CACAATGGCTAGCGAGGAATTC 59.711 50.000 9.00 0.00 0.00 2.17
703 704 2.092968 ACAATGGCTAGCGAGGAATTCA 60.093 45.455 9.00 0.00 0.00 2.57
704 705 2.246719 ATGGCTAGCGAGGAATTCAC 57.753 50.000 9.00 0.00 0.00 3.18
705 706 0.178068 TGGCTAGCGAGGAATTCACC 59.822 55.000 9.00 0.00 0.00 4.02
706 707 0.178068 GGCTAGCGAGGAATTCACCA 59.822 55.000 9.00 0.00 0.00 4.17
707 708 1.202698 GGCTAGCGAGGAATTCACCAT 60.203 52.381 9.00 0.00 0.00 3.55
708 709 1.869767 GCTAGCGAGGAATTCACCATG 59.130 52.381 7.93 0.00 0.00 3.66
709 710 1.869767 CTAGCGAGGAATTCACCATGC 59.130 52.381 7.93 3.74 34.24 4.06
710 711 0.749454 AGCGAGGAATTCACCATGCC 60.749 55.000 7.93 0.00 34.45 4.40
711 712 1.031571 GCGAGGAATTCACCATGCCA 61.032 55.000 7.93 0.00 31.45 4.92
712 713 1.683943 CGAGGAATTCACCATGCCAT 58.316 50.000 7.93 0.00 31.45 4.40
713 714 1.605710 CGAGGAATTCACCATGCCATC 59.394 52.381 7.93 0.00 31.45 3.51
714 715 2.747467 CGAGGAATTCACCATGCCATCT 60.747 50.000 7.93 0.00 31.45 2.90
715 716 2.883386 GAGGAATTCACCATGCCATCTC 59.117 50.000 7.93 0.00 31.45 2.75
716 717 1.605710 GGAATTCACCATGCCATCTCG 59.394 52.381 7.93 0.00 28.86 4.04
717 718 2.564771 GAATTCACCATGCCATCTCGA 58.435 47.619 0.00 0.00 0.00 4.04
718 719 2.945080 ATTCACCATGCCATCTCGAT 57.055 45.000 0.00 0.00 0.00 3.59
719 720 1.957668 TTCACCATGCCATCTCGATG 58.042 50.000 0.00 0.00 38.51 3.84
735 736 3.378767 TGGTACAATCCGGCGACA 58.621 55.556 9.30 0.00 31.92 4.35
736 737 1.079681 TGGTACAATCCGGCGACAC 60.080 57.895 9.30 0.00 31.92 3.67
737 738 1.812507 GGTACAATCCGGCGACACC 60.813 63.158 9.30 2.00 0.00 4.16
758 759 2.181021 GACGACGACGGCCAAGAT 59.819 61.111 12.58 0.00 42.35 2.40
759 760 1.430632 GACGACGACGGCCAAGATA 59.569 57.895 12.58 0.00 42.35 1.98
760 761 0.030369 GACGACGACGGCCAAGATAT 59.970 55.000 12.58 0.00 42.35 1.63
761 762 0.030369 ACGACGACGGCCAAGATATC 59.970 55.000 12.58 0.00 44.46 1.63
762 763 0.030235 CGACGACGGCCAAGATATCA 59.970 55.000 2.24 0.00 35.72 2.15
763 764 1.488527 GACGACGGCCAAGATATCAC 58.511 55.000 2.24 0.00 0.00 3.06
764 765 0.104304 ACGACGGCCAAGATATCACC 59.896 55.000 2.24 0.01 0.00 4.02
766 767 3.642755 CGGCCAAGATATCACCGC 58.357 61.111 2.24 2.58 37.05 5.68
767 768 2.310233 CGGCCAAGATATCACCGCG 61.310 63.158 2.24 0.00 37.05 6.46
768 769 2.607892 GGCCAAGATATCACCGCGC 61.608 63.158 0.00 0.00 0.00 6.86
769 770 2.607892 GCCAAGATATCACCGCGCC 61.608 63.158 0.00 0.00 0.00 6.53
770 771 1.227527 CCAAGATATCACCGCGCCA 60.228 57.895 0.00 0.00 0.00 5.69
771 772 1.498865 CCAAGATATCACCGCGCCAC 61.499 60.000 0.00 0.00 0.00 5.01
772 773 0.530650 CAAGATATCACCGCGCCACT 60.531 55.000 0.00 0.00 0.00 4.00
773 774 1.037493 AAGATATCACCGCGCCACTA 58.963 50.000 0.00 0.00 0.00 2.74
774 775 0.598562 AGATATCACCGCGCCACTAG 59.401 55.000 0.00 0.00 0.00 2.57
775 776 1.006102 ATATCACCGCGCCACTAGC 60.006 57.895 0.00 0.00 38.52 3.42
776 777 1.464376 ATATCACCGCGCCACTAGCT 61.464 55.000 0.00 0.00 40.39 3.32
777 778 2.349969 TATCACCGCGCCACTAGCTG 62.350 60.000 0.00 0.00 40.39 4.24
778 779 4.435436 CACCGCGCCACTAGCTGA 62.435 66.667 0.00 0.00 40.39 4.26
779 780 4.436998 ACCGCGCCACTAGCTGAC 62.437 66.667 0.00 0.00 40.39 3.51
781 782 4.476410 CGCGCCACTAGCTGACGA 62.476 66.667 0.00 0.00 40.39 4.20
782 783 2.881352 GCGCCACTAGCTGACGAC 60.881 66.667 0.00 0.00 40.39 4.34
783 784 2.878429 CGCCACTAGCTGACGACT 59.122 61.111 0.00 0.00 40.39 4.18
784 785 1.989966 GCGCCACTAGCTGACGACTA 61.990 60.000 0.00 0.00 40.39 2.59
785 786 0.450583 CGCCACTAGCTGACGACTAA 59.549 55.000 0.00 0.00 40.39 2.24
786 787 1.532090 CGCCACTAGCTGACGACTAAG 60.532 57.143 0.00 0.00 40.39 2.18
787 788 1.473278 GCCACTAGCTGACGACTAAGT 59.527 52.381 0.00 0.00 38.99 2.24
788 789 2.732597 GCCACTAGCTGACGACTAAGTG 60.733 54.545 0.00 0.00 38.99 3.16
789 790 2.747989 CCACTAGCTGACGACTAAGTGA 59.252 50.000 9.97 0.00 0.00 3.41
790 791 3.378742 CCACTAGCTGACGACTAAGTGAT 59.621 47.826 9.97 0.00 0.00 3.06
791 792 4.142359 CCACTAGCTGACGACTAAGTGATT 60.142 45.833 9.97 0.00 0.00 2.57
792 793 4.795795 CACTAGCTGACGACTAAGTGATTG 59.204 45.833 0.00 0.00 0.00 2.67
793 794 4.700692 ACTAGCTGACGACTAAGTGATTGA 59.299 41.667 0.00 0.00 0.00 2.57
794 795 3.839293 AGCTGACGACTAAGTGATTGAC 58.161 45.455 0.00 0.00 0.00 3.18
795 796 2.924290 GCTGACGACTAAGTGATTGACC 59.076 50.000 0.00 0.00 0.00 4.02
796 797 3.512680 CTGACGACTAAGTGATTGACCC 58.487 50.000 0.00 0.00 0.00 4.46
797 798 2.094906 TGACGACTAAGTGATTGACCCG 60.095 50.000 0.00 0.00 0.00 5.28
798 799 1.278238 CGACTAAGTGATTGACCCGC 58.722 55.000 0.00 0.00 0.00 6.13
799 800 1.403647 CGACTAAGTGATTGACCCGCA 60.404 52.381 0.00 0.00 0.00 5.69
800 801 2.271800 GACTAAGTGATTGACCCGCAG 58.728 52.381 0.00 0.00 0.00 5.18
801 802 1.009829 CTAAGTGATTGACCCGCAGC 58.990 55.000 0.00 0.00 0.00 5.25
802 803 0.613260 TAAGTGATTGACCCGCAGCT 59.387 50.000 0.00 0.00 0.00 4.24
803 804 0.957395 AAGTGATTGACCCGCAGCTG 60.957 55.000 10.11 10.11 0.00 4.24
804 805 2.747460 TGATTGACCCGCAGCTGC 60.747 61.111 29.12 29.12 37.78 5.25
805 806 2.437359 GATTGACCCGCAGCTGCT 60.437 61.111 34.22 18.06 39.32 4.24
806 807 2.749044 ATTGACCCGCAGCTGCTG 60.749 61.111 34.22 28.14 39.32 4.41
807 808 3.258228 ATTGACCCGCAGCTGCTGA 62.258 57.895 34.22 13.98 39.32 4.26
808 809 4.687215 TGACCCGCAGCTGCTGAC 62.687 66.667 34.22 24.21 39.32 3.51
809 810 4.385405 GACCCGCAGCTGCTGACT 62.385 66.667 34.22 17.20 39.32 3.41
810 811 4.694233 ACCCGCAGCTGCTGACTG 62.694 66.667 34.22 19.18 39.32 3.51
815 816 3.264947 CAGCTGCTGACTGCCAAG 58.735 61.111 24.88 0.00 41.37 3.61
816 817 1.302271 CAGCTGCTGACTGCCAAGA 60.302 57.895 24.88 0.00 41.37 3.02
817 818 1.003597 AGCTGCTGACTGCCAAGAG 60.004 57.895 0.00 0.00 41.37 2.85
818 819 2.688794 GCTGCTGACTGCCAAGAGC 61.689 63.158 1.50 0.57 42.00 4.09
819 820 1.003597 CTGCTGACTGCCAAGAGCT 60.004 57.895 1.50 0.00 44.23 4.09
820 821 1.004080 TGCTGACTGCCAAGAGCTC 60.004 57.895 5.27 5.27 44.23 4.09
821 822 1.004080 GCTGACTGCCAAGAGCTCA 60.004 57.895 17.77 0.00 44.23 4.26
822 823 1.020333 GCTGACTGCCAAGAGCTCAG 61.020 60.000 17.77 7.18 44.23 3.35
823 824 0.321021 CTGACTGCCAAGAGCTCAGT 59.679 55.000 17.77 10.77 44.23 3.41
824 825 0.761187 TGACTGCCAAGAGCTCAGTT 59.239 50.000 17.77 0.00 44.23 3.16
825 826 1.141657 TGACTGCCAAGAGCTCAGTTT 59.858 47.619 17.77 0.00 44.23 2.66
826 827 1.803555 GACTGCCAAGAGCTCAGTTTC 59.196 52.381 17.77 1.32 44.23 2.78
827 828 1.163554 CTGCCAAGAGCTCAGTTTCC 58.836 55.000 17.77 0.00 44.23 3.13
828 829 0.603707 TGCCAAGAGCTCAGTTTCCG 60.604 55.000 17.77 0.00 44.23 4.30
829 830 0.603975 GCCAAGAGCTCAGTTTCCGT 60.604 55.000 17.77 0.00 38.99 4.69
830 831 1.337823 GCCAAGAGCTCAGTTTCCGTA 60.338 52.381 17.77 0.00 38.99 4.02
831 832 2.611518 CCAAGAGCTCAGTTTCCGTAG 58.388 52.381 17.77 0.00 0.00 3.51
832 833 2.231478 CCAAGAGCTCAGTTTCCGTAGA 59.769 50.000 17.77 0.00 0.00 2.59
833 834 3.506810 CAAGAGCTCAGTTTCCGTAGAG 58.493 50.000 17.77 0.00 0.00 2.43
835 836 2.654939 GCTCAGTTTCCGTAGAGCG 58.345 57.895 0.00 0.00 43.27 5.03
860 861 4.821589 CCGCCGACAAGGAGAGCC 62.822 72.222 0.00 0.00 43.02 4.70
862 863 2.125350 GCCGACAAGGAGAGCCTG 60.125 66.667 0.00 0.00 46.28 4.85
863 864 2.125350 CCGACAAGGAGAGCCTGC 60.125 66.667 0.00 0.00 46.28 4.85
864 865 2.125350 CGACAAGGAGAGCCTGCC 60.125 66.667 0.00 0.00 46.28 4.85
865 866 2.125350 GACAAGGAGAGCCTGCCG 60.125 66.667 0.00 0.00 46.28 5.69
866 867 2.604686 ACAAGGAGAGCCTGCCGA 60.605 61.111 0.00 0.00 46.28 5.54
867 868 2.125350 CAAGGAGAGCCTGCCGAC 60.125 66.667 0.00 0.00 46.28 4.79
868 869 2.604686 AAGGAGAGCCTGCCGACA 60.605 61.111 0.00 0.00 46.28 4.35
869 870 1.992277 AAGGAGAGCCTGCCGACAT 60.992 57.895 0.00 0.00 46.28 3.06
870 871 1.965754 AAGGAGAGCCTGCCGACATC 61.966 60.000 0.00 0.00 46.28 3.06
871 872 2.430610 GGAGAGCCTGCCGACATCT 61.431 63.158 0.00 0.00 0.00 2.90
872 873 1.519719 GAGAGCCTGCCGACATCTT 59.480 57.895 0.00 0.00 0.00 2.40
882 883 2.437359 GACATCTTGCAGCCGCCT 60.437 61.111 0.00 0.00 37.32 5.52
952 953 0.892755 CGCCTATATAACCCTCGCCA 59.107 55.000 0.00 0.00 0.00 5.69
956 957 1.899814 CTATATAACCCTCGCCAGCCA 59.100 52.381 0.00 0.00 0.00 4.75
989 1003 1.521010 CTCACTCAGCCATCAGCCG 60.521 63.158 0.00 0.00 45.47 5.52
1111 1146 3.317571 ACCTCCTGCTTGCGCTCT 61.318 61.111 9.73 0.00 36.97 4.09
1143 1178 2.440430 CTCCTCTTCGCCTCCGGA 60.440 66.667 2.93 2.93 34.56 5.14
1275 1328 0.107993 TCGTCTCGTGGTACCTCGAT 60.108 55.000 32.41 0.00 40.37 3.59
1287 1343 3.330853 CTCGATAACAGCGGCGGC 61.331 66.667 9.78 8.43 40.37 6.53
1427 1501 4.106925 GCTCAGGCTCTGGTGGGG 62.107 72.222 2.86 0.00 35.22 4.96
1614 1691 2.982130 GGCTCTGCTTCCGAGGAA 59.018 61.111 4.34 4.34 0.00 3.36
1714 1803 2.367377 CCTGGATGAGCCCCCTGA 60.367 66.667 0.00 0.00 34.97 3.86
2499 3767 2.608623 CAGGGGTGGGAAATGAAGTTT 58.391 47.619 0.00 0.00 0.00 2.66
2513 3781 7.383300 GGAAATGAAGTTTTTGTCCAAGATCAG 59.617 37.037 0.00 0.00 0.00 2.90
2733 4001 3.136443 ACAACCTTCCTGACACAATCTCA 59.864 43.478 0.00 0.00 0.00 3.27
3024 4305 2.700897 GCCAAAGCTATCAGGAGAGGTA 59.299 50.000 0.00 0.00 35.50 3.08
3208 4491 4.498241 CGACAAGACATTCATTGGAGAGA 58.502 43.478 0.00 0.00 0.00 3.10
3228 4511 6.139671 AGAGAGAGGCATTAATCTTAGTGGA 58.860 40.000 0.00 0.00 0.00 4.02
3498 4803 2.033141 TTCCTGCCTGCAGCTGAC 59.967 61.111 20.43 9.67 42.76 3.51
3615 4954 2.579207 TGAAAGACGGGAGAATAGCG 57.421 50.000 0.00 0.00 0.00 4.26
4089 5448 1.915141 CAAGTTCCCTGTGCATCCTT 58.085 50.000 0.00 0.00 0.00 3.36
4104 5466 3.676873 GCATCCTTGTAAGGGCATTGTTG 60.677 47.826 10.59 0.52 46.47 3.33
4128 5490 2.032117 TGTCACAGCTGCATACAAAACG 60.032 45.455 15.27 0.00 0.00 3.60
4739 7037 4.483311 ACTCTCGACCGAAATTCTACAAC 58.517 43.478 0.00 0.00 0.00 3.32
4802 7100 5.446143 TGTCGTCCTTTACATTTGCATTT 57.554 34.783 0.00 0.00 0.00 2.32
4963 7365 0.811616 CAGGTATTGCTGGTCTCGCC 60.812 60.000 0.00 0.00 37.90 5.54
4989 7391 5.414454 TCACATATGGGCTTAACTTGAACAC 59.586 40.000 7.80 0.00 0.00 3.32
5145 7547 2.216898 GCCATCAGAGGGAGAAATTCG 58.783 52.381 4.93 0.00 0.00 3.34
5274 7800 6.222038 TGCGAGTGAACTATTAGAAATCCT 57.778 37.500 0.00 0.00 0.00 3.24
5289 7815 4.043310 AGAAATCCTGTCTGATGGGAAACA 59.957 41.667 5.84 0.00 32.53 2.83
5366 8008 7.530426 AGTGCAGATCCTTAACTTTTCAAAT 57.470 32.000 0.00 0.00 0.00 2.32
5467 8109 3.071892 ACTGGTATTGTTGGAAGAACGGA 59.928 43.478 0.00 0.00 0.00 4.69
5712 8355 5.181056 TCGCTTTCACATGCTTCATTTCTTA 59.819 36.000 0.00 0.00 0.00 2.10
5713 8356 5.510674 CGCTTTCACATGCTTCATTTCTTAG 59.489 40.000 0.00 0.00 0.00 2.18
5714 8357 6.385033 GCTTTCACATGCTTCATTTCTTAGT 58.615 36.000 0.00 0.00 0.00 2.24
5734 8387 8.311836 TCTTAGTTATTTCCACAGTAGTCAAGG 58.688 37.037 0.00 0.00 0.00 3.61
5872 8529 6.830736 TGTGTGATATGTTCATTTTCAGTCG 58.169 36.000 0.00 0.00 36.54 4.18
5876 8533 2.661504 TGTTCATTTTCAGTCGTGCG 57.338 45.000 0.00 0.00 0.00 5.34
5958 8735 2.240493 AACACGTGCTACTGCTTCTT 57.760 45.000 17.22 0.00 40.48 2.52
5959 8736 1.784525 ACACGTGCTACTGCTTCTTC 58.215 50.000 17.22 0.00 40.48 2.87
5960 8737 1.341531 ACACGTGCTACTGCTTCTTCT 59.658 47.619 17.22 0.00 40.48 2.85
5961 8738 1.723542 CACGTGCTACTGCTTCTTCTG 59.276 52.381 0.82 0.00 40.48 3.02
5962 8739 1.341531 ACGTGCTACTGCTTCTTCTGT 59.658 47.619 0.00 0.00 40.48 3.41
5963 8740 2.557056 ACGTGCTACTGCTTCTTCTGTA 59.443 45.455 0.00 0.00 40.48 2.74
5964 8741 3.005472 ACGTGCTACTGCTTCTTCTGTAA 59.995 43.478 0.00 0.00 40.48 2.41
5965 8742 3.987868 CGTGCTACTGCTTCTTCTGTAAA 59.012 43.478 0.00 0.00 40.48 2.01
5966 8743 4.143305 CGTGCTACTGCTTCTTCTGTAAAC 60.143 45.833 0.00 0.00 40.48 2.01
5967 8744 4.991687 GTGCTACTGCTTCTTCTGTAAACT 59.008 41.667 0.00 0.00 40.48 2.66
5968 8745 4.991056 TGCTACTGCTTCTTCTGTAAACTG 59.009 41.667 0.00 0.00 40.48 3.16
5969 8746 5.221441 TGCTACTGCTTCTTCTGTAAACTGA 60.221 40.000 0.00 0.00 40.48 3.41
6234 9011 0.965866 TGGTCTTGCTCCTCGACGAT 60.966 55.000 0.00 0.00 0.00 3.73
6263 9040 4.644498 CCATCAGCCCTTTGAAACAAATT 58.356 39.130 0.00 0.00 0.00 1.82
6271 9048 4.083908 CCCTTTGAAACAAATTGCAATCGG 60.084 41.667 13.38 10.39 0.00 4.18
6309 9090 5.514169 TCTATAATCCCATGTGTTTGGCAA 58.486 37.500 0.00 0.00 35.29 4.52
6446 9234 2.101185 CGATGAGAGCGACGCACT 59.899 61.111 23.70 21.72 31.15 4.40
6492 9281 1.086696 CGTTCTTCCACGCCATTGAT 58.913 50.000 0.00 0.00 32.43 2.57
6493 9282 1.202065 CGTTCTTCCACGCCATTGATG 60.202 52.381 0.00 0.00 32.43 3.07
6494 9283 2.083774 GTTCTTCCACGCCATTGATGA 58.916 47.619 0.00 0.00 0.00 2.92
6507 9297 5.902613 CCATTGATGAGGCTTTTTGAGTA 57.097 39.130 0.00 0.00 0.00 2.59
6514 9304 5.290493 TGAGGCTTTTTGAGTAAGTCTGA 57.710 39.130 0.00 0.00 37.67 3.27
6519 9309 5.297029 GGCTTTTTGAGTAAGTCTGACTGTT 59.703 40.000 11.71 0.00 0.00 3.16
6572 9368 4.143986 TGTGTGAGTGTATGGTTGTTGA 57.856 40.909 0.00 0.00 0.00 3.18
6864 9660 1.831652 CTCCTTCCACCTCAAGCCGT 61.832 60.000 0.00 0.00 0.00 5.68
6999 9795 4.373116 GCGCCGTGGACAGGAGAA 62.373 66.667 0.00 0.00 0.00 2.87
7025 9821 1.666700 CGGTGGTTCAACTTCAACGAA 59.333 47.619 0.00 0.00 43.39 3.85
7112 9908 1.005867 GGTTTGCTACCACCGACGA 60.006 57.895 0.00 0.00 46.92 4.20
7419 10217 2.877097 TGAGCCATGGTTTTCTGCTA 57.123 45.000 14.67 0.00 31.23 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.191995 GGTTCACGAAAAATTTGAGTCATTAAT 57.808 29.630 0.00 0.00 0.00 1.40
11 12 7.708051 TGGTTCACGAAAAATTTGAGTCATTA 58.292 30.769 0.00 0.00 0.00 1.90
37 38 6.312672 GCATGTACCCTCGCAATTTTATTTTT 59.687 34.615 0.00 0.00 0.00 1.94
38 39 5.810074 GCATGTACCCTCGCAATTTTATTTT 59.190 36.000 0.00 0.00 0.00 1.82
39 40 5.105554 TGCATGTACCCTCGCAATTTTATTT 60.106 36.000 0.00 0.00 0.00 1.40
40 41 4.400884 TGCATGTACCCTCGCAATTTTATT 59.599 37.500 0.00 0.00 0.00 1.40
41 42 3.951037 TGCATGTACCCTCGCAATTTTAT 59.049 39.130 0.00 0.00 0.00 1.40
42 43 3.127895 GTGCATGTACCCTCGCAATTTTA 59.872 43.478 1.96 0.00 35.87 1.52
43 44 2.094752 GTGCATGTACCCTCGCAATTTT 60.095 45.455 1.96 0.00 35.87 1.82
44 45 1.472480 GTGCATGTACCCTCGCAATTT 59.528 47.619 1.96 0.00 35.87 1.82
45 46 1.094785 GTGCATGTACCCTCGCAATT 58.905 50.000 1.96 0.00 35.87 2.32
46 47 0.253044 AGTGCATGTACCCTCGCAAT 59.747 50.000 10.59 0.00 35.87 3.56
47 48 0.899019 TAGTGCATGTACCCTCGCAA 59.101 50.000 10.59 0.00 35.87 4.85
48 49 0.899019 TTAGTGCATGTACCCTCGCA 59.101 50.000 10.59 0.00 0.00 5.10
49 50 2.018542 TTTAGTGCATGTACCCTCGC 57.981 50.000 10.59 0.00 0.00 5.03
50 51 5.331902 CAAATTTTAGTGCATGTACCCTCG 58.668 41.667 10.59 0.00 0.00 4.63
51 52 5.102313 GCAAATTTTAGTGCATGTACCCTC 58.898 41.667 10.59 0.00 40.58 4.30
52 53 4.081697 GGCAAATTTTAGTGCATGTACCCT 60.082 41.667 10.59 0.00 42.74 4.34
53 54 4.180817 GGCAAATTTTAGTGCATGTACCC 58.819 43.478 10.59 0.00 42.74 3.69
54 55 4.081697 AGGGCAAATTTTAGTGCATGTACC 60.082 41.667 10.59 0.00 42.74 3.34
55 56 4.864247 CAGGGCAAATTTTAGTGCATGTAC 59.136 41.667 5.71 5.71 42.74 2.90
56 57 4.620332 GCAGGGCAAATTTTAGTGCATGTA 60.620 41.667 2.50 0.00 42.74 2.29
57 58 3.865684 GCAGGGCAAATTTTAGTGCATGT 60.866 43.478 2.50 0.00 42.74 3.21
58 59 2.674357 GCAGGGCAAATTTTAGTGCATG 59.326 45.455 2.50 0.00 42.74 4.06
59 60 2.568509 AGCAGGGCAAATTTTAGTGCAT 59.431 40.909 11.92 0.00 42.74 3.96
60 61 1.969923 AGCAGGGCAAATTTTAGTGCA 59.030 42.857 11.92 0.00 42.74 4.57
61 62 2.749280 AGCAGGGCAAATTTTAGTGC 57.251 45.000 0.00 0.00 40.14 4.40
62 63 3.989817 GTGAAGCAGGGCAAATTTTAGTG 59.010 43.478 0.00 0.00 0.00 2.74
63 64 3.640967 TGTGAAGCAGGGCAAATTTTAGT 59.359 39.130 0.00 0.00 0.00 2.24
64 65 3.989817 GTGTGAAGCAGGGCAAATTTTAG 59.010 43.478 0.00 0.00 0.00 1.85
65 66 3.386078 TGTGTGAAGCAGGGCAAATTTTA 59.614 39.130 0.00 0.00 0.00 1.52
66 67 2.170187 TGTGTGAAGCAGGGCAAATTTT 59.830 40.909 0.00 0.00 0.00 1.82
67 68 1.761784 TGTGTGAAGCAGGGCAAATTT 59.238 42.857 0.00 0.00 0.00 1.82
68 69 1.412079 TGTGTGAAGCAGGGCAAATT 58.588 45.000 0.00 0.00 0.00 1.82
69 70 1.412079 TTGTGTGAAGCAGGGCAAAT 58.588 45.000 0.00 0.00 0.00 2.32
70 71 1.189752 TTTGTGTGAAGCAGGGCAAA 58.810 45.000 0.00 0.00 0.00 3.68
71 72 1.189752 TTTTGTGTGAAGCAGGGCAA 58.810 45.000 0.00 0.00 0.00 4.52
72 73 1.189752 TTTTTGTGTGAAGCAGGGCA 58.810 45.000 0.00 0.00 0.00 5.36
97 98 9.213799 GGCAATTTTAGTATTTTGACCATGAAA 57.786 29.630 0.00 0.00 0.00 2.69
98 99 8.370940 TGGCAATTTTAGTATTTTGACCATGAA 58.629 29.630 0.00 0.00 0.00 2.57
99 100 7.901029 TGGCAATTTTAGTATTTTGACCATGA 58.099 30.769 0.00 0.00 0.00 3.07
100 101 8.605746 CATGGCAATTTTAGTATTTTGACCATG 58.394 33.333 16.14 16.14 41.53 3.66
101 102 8.538701 TCATGGCAATTTTAGTATTTTGACCAT 58.461 29.630 0.00 0.00 36.91 3.55
102 103 7.901029 TCATGGCAATTTTAGTATTTTGACCA 58.099 30.769 0.00 0.00 33.24 4.02
103 104 8.947055 ATCATGGCAATTTTAGTATTTTGACC 57.053 30.769 0.00 0.00 0.00 4.02
104 105 9.807649 AGATCATGGCAATTTTAGTATTTTGAC 57.192 29.630 0.00 0.00 0.00 3.18
119 120 9.748708 GCAAATTTAGTTTATAGATCATGGCAA 57.251 29.630 0.00 0.00 0.00 4.52
120 121 8.359642 GGCAAATTTAGTTTATAGATCATGGCA 58.640 33.333 0.00 0.00 0.00 4.92
170 171 9.316730 CCACGAAAAATTTAATTCATGGATCAT 57.683 29.630 10.77 0.00 40.41 2.45
171 172 8.310382 ACCACGAAAAATTTAATTCATGGATCA 58.690 29.630 19.45 0.00 40.41 2.92
172 173 8.702163 ACCACGAAAAATTTAATTCATGGATC 57.298 30.769 19.45 0.00 40.41 3.36
174 175 9.982651 TTAACCACGAAAAATTTAATTCATGGA 57.017 25.926 19.45 1.44 40.41 3.41
188 189 9.116054 GCGATTTTTAGTAATTAACCACGAAAA 57.884 29.630 0.00 5.66 30.62 2.29
189 190 7.750014 GGCGATTTTTAGTAATTAACCACGAAA 59.250 33.333 0.00 0.00 0.00 3.46
190 191 7.094890 TGGCGATTTTTAGTAATTAACCACGAA 60.095 33.333 0.00 0.00 0.00 3.85
191 192 6.370994 TGGCGATTTTTAGTAATTAACCACGA 59.629 34.615 0.00 0.00 0.00 4.35
192 193 6.544622 TGGCGATTTTTAGTAATTAACCACG 58.455 36.000 0.00 0.00 0.00 4.94
193 194 7.434013 CCATGGCGATTTTTAGTAATTAACCAC 59.566 37.037 0.00 0.00 0.00 4.16
194 195 7.122948 ACCATGGCGATTTTTAGTAATTAACCA 59.877 33.333 13.04 0.00 0.00 3.67
195 196 7.485810 ACCATGGCGATTTTTAGTAATTAACC 58.514 34.615 13.04 0.00 0.00 2.85
196 197 8.185505 TGACCATGGCGATTTTTAGTAATTAAC 58.814 33.333 13.04 0.00 0.00 2.01
197 198 8.282455 TGACCATGGCGATTTTTAGTAATTAA 57.718 30.769 13.04 0.00 0.00 1.40
198 199 7.867305 TGACCATGGCGATTTTTAGTAATTA 57.133 32.000 13.04 0.00 0.00 1.40
199 200 6.767524 TGACCATGGCGATTTTTAGTAATT 57.232 33.333 13.04 0.00 0.00 1.40
200 201 6.767524 TTGACCATGGCGATTTTTAGTAAT 57.232 33.333 13.04 0.00 0.00 1.89
201 202 6.767524 ATTGACCATGGCGATTTTTAGTAA 57.232 33.333 13.04 0.00 0.00 2.24
202 203 6.375736 TGAATTGACCATGGCGATTTTTAGTA 59.624 34.615 13.04 0.00 0.00 1.82
203 204 5.184864 TGAATTGACCATGGCGATTTTTAGT 59.815 36.000 13.04 0.00 0.00 2.24
204 205 5.649557 TGAATTGACCATGGCGATTTTTAG 58.350 37.500 13.04 0.00 0.00 1.85
205 206 5.651387 TGAATTGACCATGGCGATTTTTA 57.349 34.783 13.04 5.02 0.00 1.52
206 207 4.533919 TGAATTGACCATGGCGATTTTT 57.466 36.364 13.04 0.00 0.00 1.94
207 208 4.533919 TTGAATTGACCATGGCGATTTT 57.466 36.364 13.04 0.00 0.00 1.82
208 209 4.533919 TTTGAATTGACCATGGCGATTT 57.466 36.364 13.04 0.43 0.00 2.17
209 210 4.533919 TTTTGAATTGACCATGGCGATT 57.466 36.364 13.04 15.51 0.00 3.34
210 211 4.533919 TTTTTGAATTGACCATGGCGAT 57.466 36.364 13.04 7.36 0.00 4.58
228 229 9.857957 TTCAACTACTTTTCACGGTAAATTTTT 57.142 25.926 0.00 0.00 0.00 1.94
229 230 9.857957 TTTCAACTACTTTTCACGGTAAATTTT 57.142 25.926 0.00 0.00 0.00 1.82
233 234 9.107177 TGTATTTCAACTACTTTTCACGGTAAA 57.893 29.630 0.00 0.00 0.00 2.01
234 235 8.659925 TGTATTTCAACTACTTTTCACGGTAA 57.340 30.769 0.00 0.00 0.00 2.85
235 236 8.659925 TTGTATTTCAACTACTTTTCACGGTA 57.340 30.769 0.00 0.00 0.00 4.02
236 237 7.556733 TTGTATTTCAACTACTTTTCACGGT 57.443 32.000 0.00 0.00 0.00 4.83
237 238 8.286800 TCATTGTATTTCAACTACTTTTCACGG 58.713 33.333 0.00 0.00 38.97 4.94
238 239 9.825972 ATCATTGTATTTCAACTACTTTTCACG 57.174 29.630 0.00 0.00 38.97 4.35
302 303 8.466798 GCCATAGTTTTACCATAAAGTTGACAT 58.533 33.333 0.00 0.00 0.00 3.06
303 304 7.448777 TGCCATAGTTTTACCATAAAGTTGACA 59.551 33.333 0.00 0.00 0.00 3.58
304 305 7.822658 TGCCATAGTTTTACCATAAAGTTGAC 58.177 34.615 0.00 0.00 0.00 3.18
305 306 8.301002 GTTGCCATAGTTTTACCATAAAGTTGA 58.699 33.333 0.00 0.00 0.00 3.18
306 307 8.303876 AGTTGCCATAGTTTTACCATAAAGTTG 58.696 33.333 0.00 0.00 0.00 3.16
307 308 8.417273 AGTTGCCATAGTTTTACCATAAAGTT 57.583 30.769 0.00 0.00 0.00 2.66
308 309 8.417273 AAGTTGCCATAGTTTTACCATAAAGT 57.583 30.769 0.00 0.00 0.00 2.66
309 310 8.519526 TGAAGTTGCCATAGTTTTACCATAAAG 58.480 33.333 0.00 0.00 0.00 1.85
310 311 8.410673 TGAAGTTGCCATAGTTTTACCATAAA 57.589 30.769 0.00 0.00 0.00 1.40
311 312 8.410673 TTGAAGTTGCCATAGTTTTACCATAA 57.589 30.769 0.00 0.00 0.00 1.90
312 313 8.465999 CATTGAAGTTGCCATAGTTTTACCATA 58.534 33.333 0.00 0.00 0.00 2.74
313 314 6.909550 TTGAAGTTGCCATAGTTTTACCAT 57.090 33.333 0.00 0.00 0.00 3.55
314 315 6.266558 ACATTGAAGTTGCCATAGTTTTACCA 59.733 34.615 0.00 0.00 0.00 3.25
315 316 6.687604 ACATTGAAGTTGCCATAGTTTTACC 58.312 36.000 0.00 0.00 0.00 2.85
316 317 9.124807 GTTACATTGAAGTTGCCATAGTTTTAC 57.875 33.333 0.00 0.00 0.00 2.01
317 318 8.851145 TGTTACATTGAAGTTGCCATAGTTTTA 58.149 29.630 0.00 0.00 0.00 1.52
318 319 7.721402 TGTTACATTGAAGTTGCCATAGTTTT 58.279 30.769 0.00 0.00 0.00 2.43
319 320 7.283625 TGTTACATTGAAGTTGCCATAGTTT 57.716 32.000 0.00 0.00 0.00 2.66
320 321 6.892658 TGTTACATTGAAGTTGCCATAGTT 57.107 33.333 0.00 0.00 0.00 2.24
321 322 6.658816 TGATGTTACATTGAAGTTGCCATAGT 59.341 34.615 0.00 0.00 0.00 2.12
322 323 7.087409 TGATGTTACATTGAAGTTGCCATAG 57.913 36.000 0.00 0.00 0.00 2.23
323 324 7.122501 ACATGATGTTACATTGAAGTTGCCATA 59.877 33.333 0.00 0.00 0.00 2.74
324 325 5.981088 TGATGTTACATTGAAGTTGCCAT 57.019 34.783 0.00 0.00 0.00 4.40
325 326 5.243507 ACATGATGTTACATTGAAGTTGCCA 59.756 36.000 0.00 0.00 0.00 4.92
326 327 5.713025 ACATGATGTTACATTGAAGTTGCC 58.287 37.500 0.00 0.00 0.00 4.52
327 328 6.380995 TGACATGATGTTACATTGAAGTTGC 58.619 36.000 0.00 0.00 0.00 4.17
328 329 8.077991 AGTTGACATGATGTTACATTGAAGTTG 58.922 33.333 0.00 0.00 0.00 3.16
329 330 8.169977 AGTTGACATGATGTTACATTGAAGTT 57.830 30.769 0.00 0.00 0.00 2.66
330 331 7.750229 AGTTGACATGATGTTACATTGAAGT 57.250 32.000 0.00 0.00 0.00 3.01
331 332 9.467258 AAAAGTTGACATGATGTTACATTGAAG 57.533 29.630 0.00 0.00 0.00 3.02
332 333 9.247126 CAAAAGTTGACATGATGTTACATTGAA 57.753 29.630 0.00 0.00 0.00 2.69
333 334 8.628280 TCAAAAGTTGACATGATGTTACATTGA 58.372 29.630 17.98 17.98 34.08 2.57
334 335 8.800231 TCAAAAGTTGACATGATGTTACATTG 57.200 30.769 0.00 10.47 34.08 2.82
335 336 9.248291 GTTCAAAAGTTGACATGATGTTACATT 57.752 29.630 0.00 0.00 39.87 2.71
336 337 8.412456 TGTTCAAAAGTTGACATGATGTTACAT 58.588 29.630 0.00 0.00 39.87 2.29
337 338 7.766283 TGTTCAAAAGTTGACATGATGTTACA 58.234 30.769 0.00 0.00 39.87 2.41
338 339 8.627487 TTGTTCAAAAGTTGACATGATGTTAC 57.373 30.769 0.00 1.61 39.87 2.50
339 340 9.645059 TTTTGTTCAAAAGTTGACATGATGTTA 57.355 25.926 0.00 0.00 39.87 2.41
340 341 8.545229 TTTTGTTCAAAAGTTGACATGATGTT 57.455 26.923 0.00 0.00 39.87 2.71
341 342 8.545229 TTTTTGTTCAAAAGTTGACATGATGT 57.455 26.923 0.00 0.00 39.87 3.06
405 406 9.910267 TTCATCATTAAATCCATCTTGAAGAGA 57.090 29.630 0.00 0.00 39.13 3.10
486 487 5.633830 AACAGATGACATCAGCGATTTTT 57.366 34.783 17.57 0.00 37.34 1.94
487 488 5.181811 TCAAACAGATGACATCAGCGATTTT 59.818 36.000 17.57 3.75 37.34 1.82
488 489 4.696877 TCAAACAGATGACATCAGCGATTT 59.303 37.500 17.57 7.24 37.34 2.17
489 490 4.256110 TCAAACAGATGACATCAGCGATT 58.744 39.130 17.57 4.16 37.34 3.34
490 491 3.865446 TCAAACAGATGACATCAGCGAT 58.135 40.909 17.57 0.00 37.34 4.58
491 492 3.317603 TCAAACAGATGACATCAGCGA 57.682 42.857 17.57 4.94 37.34 4.93
492 493 4.807834 ACTATCAAACAGATGACATCAGCG 59.192 41.667 17.57 7.90 37.57 5.18
493 494 5.814188 TGACTATCAAACAGATGACATCAGC 59.186 40.000 17.57 0.00 37.57 4.26
494 495 7.838771 TTGACTATCAAACAGATGACATCAG 57.161 36.000 17.57 11.95 37.57 2.90
495 496 8.620116 TTTTGACTATCAAACAGATGACATCA 57.380 30.769 17.57 0.00 45.03 3.07
508 509 9.970395 GCATGATCCAAATATTTTGACTATCAA 57.030 29.630 4.22 0.00 34.03 2.57
509 510 9.358406 AGCATGATCCAAATATTTTGACTATCA 57.642 29.630 4.22 5.57 0.00 2.15
512 513 9.806203 CAAAGCATGATCCAAATATTTTGACTA 57.194 29.630 4.22 0.00 0.00 2.59
513 514 8.316214 ACAAAGCATGATCCAAATATTTTGACT 58.684 29.630 4.22 0.00 0.00 3.41
514 515 8.385111 CACAAAGCATGATCCAAATATTTTGAC 58.615 33.333 4.22 1.00 0.00 3.18
515 516 8.095792 ACACAAAGCATGATCCAAATATTTTGA 58.904 29.630 4.58 4.58 0.00 2.69
516 517 8.259049 ACACAAAGCATGATCCAAATATTTTG 57.741 30.769 0.00 0.00 0.00 2.44
517 518 8.095792 TGACACAAAGCATGATCCAAATATTTT 58.904 29.630 0.00 0.00 0.00 1.82
518 519 7.546667 GTGACACAAAGCATGATCCAAATATTT 59.453 33.333 0.00 0.00 0.00 1.40
519 520 7.037438 GTGACACAAAGCATGATCCAAATATT 58.963 34.615 0.00 0.00 0.00 1.28
520 521 6.153170 TGTGACACAAAGCATGATCCAAATAT 59.847 34.615 5.62 0.00 0.00 1.28
521 522 5.476254 TGTGACACAAAGCATGATCCAAATA 59.524 36.000 5.62 0.00 0.00 1.40
522 523 4.281435 TGTGACACAAAGCATGATCCAAAT 59.719 37.500 5.62 0.00 0.00 2.32
523 524 3.635836 TGTGACACAAAGCATGATCCAAA 59.364 39.130 5.62 0.00 0.00 3.28
524 525 3.004629 GTGTGACACAAAGCATGATCCAA 59.995 43.478 10.50 0.00 34.08 3.53
525 526 2.553602 GTGTGACACAAAGCATGATCCA 59.446 45.455 10.50 0.00 34.08 3.41
526 527 2.413239 CGTGTGACACAAAGCATGATCC 60.413 50.000 16.74 0.00 33.40 3.36
527 528 2.224079 ACGTGTGACACAAAGCATGATC 59.776 45.455 16.74 0.00 33.40 2.92
528 529 2.031769 CACGTGTGACACAAAGCATGAT 60.032 45.455 16.74 0.00 33.40 2.45
529 530 1.330213 CACGTGTGACACAAAGCATGA 59.670 47.619 16.74 0.00 33.40 3.07
530 531 1.063912 ACACGTGTGACACAAAGCATG 59.936 47.619 22.71 7.00 33.40 4.06
531 532 1.378531 ACACGTGTGACACAAAGCAT 58.621 45.000 22.71 0.00 33.40 3.79
532 533 2.847725 ACACGTGTGACACAAAGCA 58.152 47.368 22.71 0.00 33.40 3.91
542 543 5.391523 CCAAATAATAAGGGTCACACGTGTG 60.392 44.000 37.04 37.04 46.91 3.82
543 544 4.698304 CCAAATAATAAGGGTCACACGTGT 59.302 41.667 17.22 17.22 0.00 4.49
544 545 4.095782 CCCAAATAATAAGGGTCACACGTG 59.904 45.833 15.48 15.48 37.81 4.49
545 546 4.019141 TCCCAAATAATAAGGGTCACACGT 60.019 41.667 0.00 0.00 43.31 4.49
546 547 4.519213 TCCCAAATAATAAGGGTCACACG 58.481 43.478 0.00 0.00 43.31 4.49
547 548 6.844097 TTTCCCAAATAATAAGGGTCACAC 57.156 37.500 0.00 0.00 43.31 3.82
548 549 9.722317 ATATTTTCCCAAATAATAAGGGTCACA 57.278 29.630 0.00 0.00 43.31 3.58
561 562 9.440773 GCTTTTCTCTCAAATATTTTCCCAAAT 57.559 29.630 0.00 0.00 36.52 2.32
562 563 8.428063 TGCTTTTCTCTCAAATATTTTCCCAAA 58.572 29.630 0.00 0.00 0.00 3.28
563 564 7.961351 TGCTTTTCTCTCAAATATTTTCCCAA 58.039 30.769 0.00 0.00 0.00 4.12
564 565 7.537596 TGCTTTTCTCTCAAATATTTTCCCA 57.462 32.000 0.00 0.00 0.00 4.37
565 566 8.253113 TCATGCTTTTCTCTCAAATATTTTCCC 58.747 33.333 0.00 0.00 0.00 3.97
566 567 9.080915 GTCATGCTTTTCTCTCAAATATTTTCC 57.919 33.333 0.00 0.00 0.00 3.13
567 568 9.852091 AGTCATGCTTTTCTCTCAAATATTTTC 57.148 29.630 0.00 0.00 0.00 2.29
573 574 9.468532 GTTTAAAGTCATGCTTTTCTCTCAAAT 57.531 29.630 16.63 0.00 44.41 2.32
574 575 8.686334 AGTTTAAAGTCATGCTTTTCTCTCAAA 58.314 29.630 16.63 9.60 44.41 2.69
575 576 8.225603 AGTTTAAAGTCATGCTTTTCTCTCAA 57.774 30.769 16.63 5.34 44.41 3.02
576 577 7.807977 AGTTTAAAGTCATGCTTTTCTCTCA 57.192 32.000 16.63 0.47 44.41 3.27
577 578 7.805542 GGAAGTTTAAAGTCATGCTTTTCTCTC 59.194 37.037 16.63 9.68 44.41 3.20
578 579 7.285401 TGGAAGTTTAAAGTCATGCTTTTCTCT 59.715 33.333 16.63 11.09 44.41 3.10
579 580 7.425606 TGGAAGTTTAAAGTCATGCTTTTCTC 58.574 34.615 16.63 9.65 44.41 2.87
580 581 7.346751 TGGAAGTTTAAAGTCATGCTTTTCT 57.653 32.000 16.63 11.57 44.41 2.52
581 582 8.419076 TTTGGAAGTTTAAAGTCATGCTTTTC 57.581 30.769 16.63 9.91 44.41 2.29
582 583 8.962884 ATTTGGAAGTTTAAAGTCATGCTTTT 57.037 26.923 16.63 9.16 44.41 2.27
584 585 9.077885 TCTATTTGGAAGTTTAAAGTCATGCTT 57.922 29.630 0.00 0.00 39.52 3.91
585 586 8.635765 TCTATTTGGAAGTTTAAAGTCATGCT 57.364 30.769 0.00 0.00 0.00 3.79
586 587 9.346725 CTTCTATTTGGAAGTTTAAAGTCATGC 57.653 33.333 0.00 0.00 38.22 4.06
593 594 8.739972 GCCTGATCTTCTATTTGGAAGTTTAAA 58.260 33.333 3.96 0.00 42.19 1.52
594 595 8.109634 AGCCTGATCTTCTATTTGGAAGTTTAA 58.890 33.333 3.96 0.00 42.19 1.52
595 596 7.554118 CAGCCTGATCTTCTATTTGGAAGTTTA 59.446 37.037 3.96 0.00 42.19 2.01
596 597 6.376581 CAGCCTGATCTTCTATTTGGAAGTTT 59.623 38.462 3.96 0.00 42.19 2.66
597 598 5.884792 CAGCCTGATCTTCTATTTGGAAGTT 59.115 40.000 3.96 0.00 42.19 2.66
598 599 5.190528 TCAGCCTGATCTTCTATTTGGAAGT 59.809 40.000 0.00 0.00 42.19 3.01
599 600 5.678583 TCAGCCTGATCTTCTATTTGGAAG 58.321 41.667 0.00 0.00 42.72 3.46
600 601 5.698741 TCAGCCTGATCTTCTATTTGGAA 57.301 39.130 0.00 0.00 0.00 3.53
601 602 5.698741 TTCAGCCTGATCTTCTATTTGGA 57.301 39.130 0.00 0.00 0.00 3.53
602 603 6.735145 GCATTTCAGCCTGATCTTCTATTTGG 60.735 42.308 0.00 0.00 0.00 3.28
603 604 6.207213 GCATTTCAGCCTGATCTTCTATTTG 58.793 40.000 0.00 0.00 0.00 2.32
604 605 6.388435 GCATTTCAGCCTGATCTTCTATTT 57.612 37.500 0.00 0.00 0.00 1.40
618 619 3.665745 TTGAAAGAAGGGCATTTCAGC 57.334 42.857 4.19 0.00 43.97 4.26
619 620 4.947645 TGTTTGAAAGAAGGGCATTTCAG 58.052 39.130 4.19 0.00 43.97 3.02
620 621 5.115480 GTTGTTTGAAAGAAGGGCATTTCA 58.885 37.500 4.19 3.74 42.17 2.69
621 622 5.115480 TGTTGTTTGAAAGAAGGGCATTTC 58.885 37.500 0.00 0.00 36.24 2.17
622 623 5.096443 TGTTGTTTGAAAGAAGGGCATTT 57.904 34.783 0.00 0.00 0.00 2.32
623 624 4.751767 TGTTGTTTGAAAGAAGGGCATT 57.248 36.364 0.00 0.00 0.00 3.56
624 625 4.634199 CATGTTGTTTGAAAGAAGGGCAT 58.366 39.130 0.00 0.00 0.00 4.40
625 626 3.740764 GCATGTTGTTTGAAAGAAGGGCA 60.741 43.478 0.00 0.00 0.00 5.36
626 627 2.802247 GCATGTTGTTTGAAAGAAGGGC 59.198 45.455 0.00 0.00 0.00 5.19
627 628 3.803778 GTGCATGTTGTTTGAAAGAAGGG 59.196 43.478 0.00 0.00 0.00 3.95
628 629 3.486841 CGTGCATGTTGTTTGAAAGAAGG 59.513 43.478 0.00 0.00 0.00 3.46
629 630 4.204978 GTCGTGCATGTTGTTTGAAAGAAG 59.795 41.667 5.68 0.00 0.00 2.85
630 631 4.101942 GTCGTGCATGTTGTTTGAAAGAA 58.898 39.130 5.68 0.00 0.00 2.52
631 632 3.127721 TGTCGTGCATGTTGTTTGAAAGA 59.872 39.130 5.68 0.00 0.00 2.52
632 633 3.433709 TGTCGTGCATGTTGTTTGAAAG 58.566 40.909 5.68 0.00 0.00 2.62
633 634 3.494045 TGTCGTGCATGTTGTTTGAAA 57.506 38.095 5.68 0.00 0.00 2.69
634 635 3.494045 TTGTCGTGCATGTTGTTTGAA 57.506 38.095 5.68 0.00 0.00 2.69
635 636 3.706802 ATTGTCGTGCATGTTGTTTGA 57.293 38.095 5.68 0.00 0.00 2.69
636 637 3.602038 GCAATTGTCGTGCATGTTGTTTG 60.602 43.478 7.40 7.71 41.80 2.93
637 638 2.539274 GCAATTGTCGTGCATGTTGTTT 59.461 40.909 7.40 0.00 41.80 2.83
638 639 2.126467 GCAATTGTCGTGCATGTTGTT 58.874 42.857 7.40 0.00 41.80 2.83
639 640 1.337703 AGCAATTGTCGTGCATGTTGT 59.662 42.857 7.40 0.00 44.74 3.32
640 641 1.717113 CAGCAATTGTCGTGCATGTTG 59.283 47.619 7.40 4.29 44.74 3.33
641 642 1.337703 ACAGCAATTGTCGTGCATGTT 59.662 42.857 7.40 0.00 44.74 2.71
642 643 0.953727 ACAGCAATTGTCGTGCATGT 59.046 45.000 7.40 0.00 44.74 3.21
643 644 1.069091 TCACAGCAATTGTCGTGCATG 60.069 47.619 18.89 0.00 44.74 4.06
644 645 1.237533 TCACAGCAATTGTCGTGCAT 58.762 45.000 18.89 0.00 44.74 3.96
645 646 1.237533 ATCACAGCAATTGTCGTGCA 58.762 45.000 18.89 11.52 44.74 4.57
646 647 2.336554 AATCACAGCAATTGTCGTGC 57.663 45.000 18.89 1.83 38.16 5.34
647 648 4.084952 CCAAAAATCACAGCAATTGTCGTG 60.085 41.667 18.06 18.06 38.16 4.35
648 649 4.050553 CCAAAAATCACAGCAATTGTCGT 58.949 39.130 7.40 1.62 38.16 4.34
649 650 3.429543 CCCAAAAATCACAGCAATTGTCG 59.570 43.478 7.40 0.95 38.16 4.35
650 651 4.379652 ACCCAAAAATCACAGCAATTGTC 58.620 39.130 7.40 0.00 38.16 3.18
651 652 4.141756 TGACCCAAAAATCACAGCAATTGT 60.142 37.500 7.40 0.00 41.94 2.71
652 653 4.378774 TGACCCAAAAATCACAGCAATTG 58.621 39.130 0.00 0.00 0.00 2.32
653 654 4.686191 TGACCCAAAAATCACAGCAATT 57.314 36.364 0.00 0.00 0.00 2.32
654 655 4.101430 AGTTGACCCAAAAATCACAGCAAT 59.899 37.500 0.00 0.00 0.00 3.56
655 656 3.450457 AGTTGACCCAAAAATCACAGCAA 59.550 39.130 0.00 0.00 0.00 3.91
656 657 3.030291 AGTTGACCCAAAAATCACAGCA 58.970 40.909 0.00 0.00 0.00 4.41
657 658 3.068024 TCAGTTGACCCAAAAATCACAGC 59.932 43.478 0.00 0.00 0.00 4.40
658 659 4.794003 GCTCAGTTGACCCAAAAATCACAG 60.794 45.833 0.00 0.00 0.00 3.66
659 660 3.068024 GCTCAGTTGACCCAAAAATCACA 59.932 43.478 0.00 0.00 0.00 3.58
660 661 3.068024 TGCTCAGTTGACCCAAAAATCAC 59.932 43.478 0.00 0.00 0.00 3.06
661 662 3.068024 GTGCTCAGTTGACCCAAAAATCA 59.932 43.478 0.00 0.00 0.00 2.57
662 663 3.068024 TGTGCTCAGTTGACCCAAAAATC 59.932 43.478 0.00 0.00 0.00 2.17
663 664 3.030291 TGTGCTCAGTTGACCCAAAAAT 58.970 40.909 0.00 0.00 0.00 1.82
664 665 2.451490 TGTGCTCAGTTGACCCAAAAA 58.549 42.857 0.00 0.00 0.00 1.94
665 666 2.136298 TGTGCTCAGTTGACCCAAAA 57.864 45.000 0.00 0.00 0.00 2.44
666 667 2.136298 TTGTGCTCAGTTGACCCAAA 57.864 45.000 0.00 0.00 0.00 3.28
667 668 1.955778 CATTGTGCTCAGTTGACCCAA 59.044 47.619 0.00 0.00 0.00 4.12
668 669 1.608055 CATTGTGCTCAGTTGACCCA 58.392 50.000 0.00 0.00 0.00 4.51
669 670 0.883833 CCATTGTGCTCAGTTGACCC 59.116 55.000 3.24 0.00 0.00 4.46
670 671 0.242017 GCCATTGTGCTCAGTTGACC 59.758 55.000 3.24 0.00 0.00 4.02
671 672 1.242076 AGCCATTGTGCTCAGTTGAC 58.758 50.000 3.24 0.00 36.75 3.18
672 673 2.703416 CTAGCCATTGTGCTCAGTTGA 58.297 47.619 3.35 0.00 41.68 3.18
673 674 1.131883 GCTAGCCATTGTGCTCAGTTG 59.868 52.381 2.29 0.00 41.68 3.16
674 675 1.457346 GCTAGCCATTGTGCTCAGTT 58.543 50.000 2.29 0.00 41.68 3.16
675 676 0.742281 CGCTAGCCATTGTGCTCAGT 60.742 55.000 9.66 0.00 41.68 3.41
676 677 0.460811 TCGCTAGCCATTGTGCTCAG 60.461 55.000 9.66 0.00 41.68 3.35
677 678 0.460811 CTCGCTAGCCATTGTGCTCA 60.461 55.000 9.66 0.00 41.68 4.26
678 679 1.156645 CCTCGCTAGCCATTGTGCTC 61.157 60.000 9.66 0.00 41.68 4.26
679 680 1.153289 CCTCGCTAGCCATTGTGCT 60.153 57.895 9.66 5.23 45.38 4.40
680 681 0.744414 TTCCTCGCTAGCCATTGTGC 60.744 55.000 9.66 0.00 0.00 4.57
681 682 1.959042 ATTCCTCGCTAGCCATTGTG 58.041 50.000 9.66 0.00 0.00 3.33
682 683 2.092968 TGAATTCCTCGCTAGCCATTGT 60.093 45.455 9.66 0.00 0.00 2.71
683 684 2.289002 GTGAATTCCTCGCTAGCCATTG 59.711 50.000 9.66 0.00 0.00 2.82
684 685 2.565841 GTGAATTCCTCGCTAGCCATT 58.434 47.619 9.66 0.00 0.00 3.16
685 686 1.202698 GGTGAATTCCTCGCTAGCCAT 60.203 52.381 9.66 0.00 34.75 4.40
686 687 0.178068 GGTGAATTCCTCGCTAGCCA 59.822 55.000 9.66 0.00 34.75 4.75
687 688 0.178068 TGGTGAATTCCTCGCTAGCC 59.822 55.000 9.66 0.00 34.75 3.93
688 689 1.869767 CATGGTGAATTCCTCGCTAGC 59.130 52.381 4.06 4.06 34.75 3.42
689 690 1.869767 GCATGGTGAATTCCTCGCTAG 59.130 52.381 2.27 0.00 34.75 3.42
690 691 1.475034 GGCATGGTGAATTCCTCGCTA 60.475 52.381 2.27 0.00 34.75 4.26
691 692 0.749454 GGCATGGTGAATTCCTCGCT 60.749 55.000 2.27 0.00 34.75 4.93
692 693 1.031571 TGGCATGGTGAATTCCTCGC 61.032 55.000 2.27 0.00 0.00 5.03
693 694 1.605710 GATGGCATGGTGAATTCCTCG 59.394 52.381 3.81 0.00 0.00 4.63
694 695 2.883386 GAGATGGCATGGTGAATTCCTC 59.117 50.000 3.81 0.00 0.00 3.71
695 696 2.747467 CGAGATGGCATGGTGAATTCCT 60.747 50.000 3.81 0.00 0.00 3.36
696 697 1.605710 CGAGATGGCATGGTGAATTCC 59.394 52.381 3.81 0.00 0.00 3.01
697 698 2.564771 TCGAGATGGCATGGTGAATTC 58.435 47.619 3.81 0.00 0.00 2.17
698 699 2.715749 TCGAGATGGCATGGTGAATT 57.284 45.000 3.81 0.00 0.00 2.17
699 700 2.501261 CATCGAGATGGCATGGTGAAT 58.499 47.619 3.81 0.00 35.24 2.57
700 701 1.957668 CATCGAGATGGCATGGTGAA 58.042 50.000 3.81 0.00 35.24 3.18
701 702 3.692424 CATCGAGATGGCATGGTGA 57.308 52.632 3.81 0.00 35.24 4.02
710 711 2.677199 CCGGATTGTACCATCGAGATG 58.323 52.381 0.00 6.12 38.51 2.90
711 712 1.000955 GCCGGATTGTACCATCGAGAT 59.999 52.381 5.05 0.00 0.00 2.75
712 713 0.387929 GCCGGATTGTACCATCGAGA 59.612 55.000 5.05 0.00 0.00 4.04
713 714 0.939577 CGCCGGATTGTACCATCGAG 60.940 60.000 5.05 0.00 0.00 4.04
714 715 1.066752 CGCCGGATTGTACCATCGA 59.933 57.895 5.05 0.00 0.00 3.59
715 716 1.066752 TCGCCGGATTGTACCATCG 59.933 57.895 5.05 0.00 0.00 3.84
716 717 0.179094 TGTCGCCGGATTGTACCATC 60.179 55.000 5.05 0.00 0.00 3.51
717 718 0.461339 GTGTCGCCGGATTGTACCAT 60.461 55.000 5.05 0.00 0.00 3.55
718 719 1.079681 GTGTCGCCGGATTGTACCA 60.080 57.895 5.05 0.00 0.00 3.25
719 720 1.812507 GGTGTCGCCGGATTGTACC 60.813 63.158 5.05 2.14 0.00 3.34
720 721 3.790177 GGTGTCGCCGGATTGTAC 58.210 61.111 5.05 0.00 0.00 2.90
740 741 1.996786 TATCTTGGCCGTCGTCGTCC 61.997 60.000 0.00 0.00 35.51 4.79
741 742 0.030369 ATATCTTGGCCGTCGTCGTC 59.970 55.000 0.00 0.00 35.01 4.20
742 743 0.030369 GATATCTTGGCCGTCGTCGT 59.970 55.000 0.00 0.00 35.01 4.34
743 744 0.030235 TGATATCTTGGCCGTCGTCG 59.970 55.000 3.98 0.00 0.00 5.12
744 745 1.488527 GTGATATCTTGGCCGTCGTC 58.511 55.000 3.98 0.00 0.00 4.20
745 746 0.104304 GGTGATATCTTGGCCGTCGT 59.896 55.000 3.98 0.00 0.00 4.34
746 747 0.939577 CGGTGATATCTTGGCCGTCG 60.940 60.000 15.34 0.00 37.87 5.12
747 748 1.222115 GCGGTGATATCTTGGCCGTC 61.222 60.000 20.62 13.62 43.78 4.79
748 749 1.227556 GCGGTGATATCTTGGCCGT 60.228 57.895 20.62 0.00 43.78 5.68
749 750 2.310233 CGCGGTGATATCTTGGCCG 61.310 63.158 17.69 17.69 44.60 6.13
750 751 2.607892 GCGCGGTGATATCTTGGCC 61.608 63.158 8.83 0.00 0.00 5.36
751 752 2.607892 GGCGCGGTGATATCTTGGC 61.608 63.158 8.83 3.62 0.00 4.52
752 753 1.227527 TGGCGCGGTGATATCTTGG 60.228 57.895 8.83 0.00 0.00 3.61
753 754 0.530650 AGTGGCGCGGTGATATCTTG 60.531 55.000 8.83 0.00 0.00 3.02
754 755 1.000163 CTAGTGGCGCGGTGATATCTT 60.000 52.381 8.83 0.00 0.00 2.40
755 756 0.598562 CTAGTGGCGCGGTGATATCT 59.401 55.000 8.83 0.00 0.00 1.98
756 757 1.009389 GCTAGTGGCGCGGTGATATC 61.009 60.000 8.83 0.00 0.00 1.63
757 758 1.006102 GCTAGTGGCGCGGTGATAT 60.006 57.895 8.83 0.00 0.00 1.63
758 759 2.415843 GCTAGTGGCGCGGTGATA 59.584 61.111 8.83 0.00 0.00 2.15
767 768 1.473278 ACTTAGTCGTCAGCTAGTGGC 59.527 52.381 0.00 0.00 42.19 5.01
768 769 2.747989 TCACTTAGTCGTCAGCTAGTGG 59.252 50.000 8.69 0.00 0.00 4.00
769 770 4.624336 ATCACTTAGTCGTCAGCTAGTG 57.376 45.455 3.13 3.13 0.00 2.74
770 771 4.700692 TCAATCACTTAGTCGTCAGCTAGT 59.299 41.667 0.00 0.00 0.00 2.57
771 772 5.031578 GTCAATCACTTAGTCGTCAGCTAG 58.968 45.833 0.00 0.00 0.00 3.42
772 773 4.142447 GGTCAATCACTTAGTCGTCAGCTA 60.142 45.833 0.00 0.00 0.00 3.32
773 774 3.367498 GGTCAATCACTTAGTCGTCAGCT 60.367 47.826 0.00 0.00 0.00 4.24
774 775 2.924290 GGTCAATCACTTAGTCGTCAGC 59.076 50.000 0.00 0.00 0.00 4.26
775 776 3.512680 GGGTCAATCACTTAGTCGTCAG 58.487 50.000 0.00 0.00 0.00 3.51
776 777 2.094906 CGGGTCAATCACTTAGTCGTCA 60.095 50.000 0.00 0.00 0.00 4.35
777 778 2.527100 CGGGTCAATCACTTAGTCGTC 58.473 52.381 0.00 0.00 0.00 4.20
778 779 1.403780 GCGGGTCAATCACTTAGTCGT 60.404 52.381 0.00 0.00 0.00 4.34
779 780 1.278238 GCGGGTCAATCACTTAGTCG 58.722 55.000 0.00 0.00 0.00 4.18
780 781 2.271800 CTGCGGGTCAATCACTTAGTC 58.728 52.381 0.00 0.00 0.00 2.59
781 782 1.676014 GCTGCGGGTCAATCACTTAGT 60.676 52.381 0.00 0.00 0.00 2.24
782 783 1.009829 GCTGCGGGTCAATCACTTAG 58.990 55.000 0.00 0.00 0.00 2.18
783 784 0.613260 AGCTGCGGGTCAATCACTTA 59.387 50.000 0.00 0.00 0.00 2.24
784 785 0.957395 CAGCTGCGGGTCAATCACTT 60.957 55.000 0.00 0.00 0.00 3.16
785 786 1.376424 CAGCTGCGGGTCAATCACT 60.376 57.895 0.00 0.00 0.00 3.41
786 787 3.044059 GCAGCTGCGGGTCAATCAC 62.044 63.158 25.23 0.00 0.00 3.06
787 788 2.747460 GCAGCTGCGGGTCAATCA 60.747 61.111 25.23 0.00 0.00 2.57
803 804 1.004080 TGAGCTCTTGGCAGTCAGC 60.004 57.895 16.19 6.35 44.79 4.26
804 805 0.321021 ACTGAGCTCTTGGCAGTCAG 59.679 55.000 16.19 3.73 44.08 3.51
805 806 0.761187 AACTGAGCTCTTGGCAGTCA 59.239 50.000 16.19 0.00 41.65 3.41
806 807 1.803555 GAAACTGAGCTCTTGGCAGTC 59.196 52.381 16.19 0.00 41.65 3.51
807 808 1.544314 GGAAACTGAGCTCTTGGCAGT 60.544 52.381 16.19 7.26 44.15 4.40
808 809 1.163554 GGAAACTGAGCTCTTGGCAG 58.836 55.000 16.19 6.55 44.79 4.85
809 810 0.603707 CGGAAACTGAGCTCTTGGCA 60.604 55.000 16.19 0.00 44.79 4.92
810 811 0.603975 ACGGAAACTGAGCTCTTGGC 60.604 55.000 16.19 0.58 42.19 4.52
811 812 2.231478 TCTACGGAAACTGAGCTCTTGG 59.769 50.000 16.19 7.75 0.00 3.61
812 813 3.506810 CTCTACGGAAACTGAGCTCTTG 58.493 50.000 16.19 10.33 0.00 3.02
813 814 2.094442 GCTCTACGGAAACTGAGCTCTT 60.094 50.000 16.19 0.00 45.78 2.85
814 815 1.474879 GCTCTACGGAAACTGAGCTCT 59.525 52.381 16.19 0.00 45.78 4.09
815 816 1.795889 CGCTCTACGGAAACTGAGCTC 60.796 57.143 6.82 6.82 46.70 4.09
816 817 0.171455 CGCTCTACGGAAACTGAGCT 59.829 55.000 11.23 0.00 46.70 4.09
817 818 2.654939 CGCTCTACGGAAACTGAGC 58.345 57.895 0.00 0.00 45.79 4.26
843 844 4.821589 GGCTCTCCTTGTCGGCGG 62.822 72.222 7.21 0.00 0.00 6.13
844 845 3.764466 AGGCTCTCCTTGTCGGCG 61.764 66.667 0.00 0.00 40.66 6.46
845 846 2.125350 CAGGCTCTCCTTGTCGGC 60.125 66.667 0.00 0.00 41.93 5.54
846 847 2.125350 GCAGGCTCTCCTTGTCGG 60.125 66.667 0.00 0.00 41.93 4.79
847 848 2.125350 GGCAGGCTCTCCTTGTCG 60.125 66.667 0.00 0.00 41.93 4.35
848 849 2.125350 CGGCAGGCTCTCCTTGTC 60.125 66.667 0.00 0.00 41.93 3.18
849 850 2.604686 TCGGCAGGCTCTCCTTGT 60.605 61.111 0.00 0.00 41.93 3.16
850 851 2.125350 GTCGGCAGGCTCTCCTTG 60.125 66.667 0.00 0.00 41.93 3.61
851 852 1.965754 GATGTCGGCAGGCTCTCCTT 61.966 60.000 0.00 0.00 41.93 3.36
852 853 2.364842 ATGTCGGCAGGCTCTCCT 60.365 61.111 0.00 0.00 45.66 3.69
853 854 1.965754 AAGATGTCGGCAGGCTCTCC 61.966 60.000 0.00 0.00 0.00 3.71
854 855 0.809241 CAAGATGTCGGCAGGCTCTC 60.809 60.000 0.00 0.00 0.00 3.20
855 856 1.220206 CAAGATGTCGGCAGGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
856 857 2.467826 GCAAGATGTCGGCAGGCTC 61.468 63.158 0.00 0.00 0.00 4.70
857 858 2.437359 GCAAGATGTCGGCAGGCT 60.437 61.111 0.00 0.00 0.00 4.58
858 859 2.747460 TGCAAGATGTCGGCAGGC 60.747 61.111 0.00 0.00 32.95 4.85
861 862 2.747460 GGCTGCAAGATGTCGGCA 60.747 61.111 0.50 0.00 36.35 5.69
862 863 3.869272 CGGCTGCAAGATGTCGGC 61.869 66.667 0.50 0.00 34.07 5.54
863 864 3.869272 GCGGCTGCAAGATGTCGG 61.869 66.667 14.08 0.00 42.15 4.79
864 865 3.869272 GGCGGCTGCAAGATGTCG 61.869 66.667 21.31 0.00 45.35 4.35
865 866 2.437359 AGGCGGCTGCAAGATGTC 60.437 61.111 21.31 0.00 45.35 3.06
866 867 2.437359 GAGGCGGCTGCAAGATGT 60.437 61.111 19.63 0.00 45.35 3.06
867 868 3.570638 CGAGGCGGCTGCAAGATG 61.571 66.667 19.63 0.00 45.35 2.90
868 869 4.087892 ACGAGGCGGCTGCAAGAT 62.088 61.111 19.63 1.10 45.35 2.40
869 870 4.742201 GACGAGGCGGCTGCAAGA 62.742 66.667 19.63 0.00 45.35 3.02
930 931 0.822164 CGAGGGTTATATAGGCGGGG 59.178 60.000 0.00 0.00 0.00 5.73
934 935 1.405661 GCTGGCGAGGGTTATATAGGC 60.406 57.143 0.00 0.00 0.00 3.93
1089 1124 4.357279 GCAAGCAGGAGGTGGGCT 62.357 66.667 0.00 0.00 40.14 5.19
1427 1501 1.119684 GGAGAGGAGAAGGAAGAGCC 58.880 60.000 0.00 0.00 0.00 4.70
1714 1803 4.457496 CCTGTGGCCGACTGCGAT 62.457 66.667 0.00 0.00 42.61 4.58
2124 3392 0.250424 TCTGGTACACGACGGAGACA 60.250 55.000 0.00 0.00 0.00 3.41
2346 3614 0.317799 TTGCAAGCATGACCGCAATT 59.682 45.000 10.82 0.00 39.32 2.32
2499 3767 3.390967 TGAGGTCACTGATCTTGGACAAA 59.609 43.478 11.45 0.00 32.00 2.83
2513 3781 0.605589 CTCTGTGGTCCTGAGGTCAC 59.394 60.000 16.50 16.50 35.95 3.67
2733 4001 4.927049 ACACCTTGGTCTGAATCATCATT 58.073 39.130 0.00 0.00 34.37 2.57
3024 4305 1.000274 GCCATTGTTCCGCAAGTCTTT 60.000 47.619 0.00 0.00 40.86 2.52
3208 4491 4.349342 CCCTCCACTAAGATTAATGCCTCT 59.651 45.833 0.00 0.00 0.00 3.69
3228 4511 1.076024 TGAATCCTTTGCTTCTGCCCT 59.924 47.619 0.00 0.00 38.71 5.19
3286 4569 1.324736 GCTGAACGGATCATCGAACAC 59.675 52.381 0.00 0.00 37.44 3.32
3498 4803 7.486647 CCAATGAAATTCTCACCAGAATAAGG 58.513 38.462 0.00 0.00 46.96 2.69
3615 4954 1.068610 TCGTTGTATTTGCCTGCTTGC 60.069 47.619 0.00 0.00 0.00 4.01
4089 5448 2.625790 GACAACCAACAATGCCCTTACA 59.374 45.455 0.00 0.00 0.00 2.41
4104 5466 1.522668 TGTATGCAGCTGTGACAACC 58.477 50.000 16.64 0.00 0.00 3.77
4492 5858 9.462174 TGCAGTTAAAACAACATGAAGAATAAG 57.538 29.630 0.00 0.00 0.00 1.73
4739 7037 2.483745 CACTCCATTGCTGCAGCG 59.516 61.111 32.11 19.51 45.83 5.18
4802 7100 7.712639 GGTAGACTGATCAGAAATATCAAAGCA 59.287 37.037 29.27 0.00 33.13 3.91
4863 7161 8.798402 ACCATTACTCGAATATTTTTCCAAACA 58.202 29.630 0.00 0.00 0.00 2.83
4963 7365 4.188462 TCAAGTTAAGCCCATATGTGACG 58.812 43.478 1.24 0.00 0.00 4.35
4989 7391 0.664166 GACAACCCATGCTTGCAACG 60.664 55.000 0.00 0.00 0.00 4.10
5145 7547 6.147328 GGTATTTACATGGAGATTACGAAGCC 59.853 42.308 0.00 0.00 0.00 4.35
5274 7800 3.640498 TGCAATTTGTTTCCCATCAGACA 59.360 39.130 0.00 0.00 0.00 3.41
5289 7815 6.339730 TGACAAAACACTGAATCTGCAATTT 58.660 32.000 0.00 0.00 0.00 1.82
5366 8008 4.194640 GAGCATATCTCACCTGCAGAAAA 58.805 43.478 17.39 0.00 41.51 2.29
5467 8109 6.530120 TGTATGAGTGTTGATTTACCACTGT 58.470 36.000 0.00 0.00 39.43 3.55
5712 8355 6.465084 GTCCTTGACTACTGTGGAAATAACT 58.535 40.000 0.00 0.00 0.00 2.24
5713 8356 5.642491 GGTCCTTGACTACTGTGGAAATAAC 59.358 44.000 0.00 0.00 32.47 1.89
5714 8357 5.546499 AGGTCCTTGACTACTGTGGAAATAA 59.454 40.000 0.00 0.00 32.47 1.40
5717 8370 3.071023 CAGGTCCTTGACTACTGTGGAAA 59.929 47.826 0.00 0.00 32.47 3.13
5734 8387 4.508124 CAGACTACAACTTCACAACAGGTC 59.492 45.833 0.00 0.00 0.00 3.85
5872 8529 2.354821 AGTTTCAGACTTTCAACCGCAC 59.645 45.455 0.00 0.00 33.92 5.34
5876 8533 7.706607 AGCAAATTAAGTTTCAGACTTTCAACC 59.293 33.333 0.00 0.00 46.34 3.77
6263 9040 1.846007 ATTAACAAGGCCCGATTGCA 58.154 45.000 0.00 0.00 0.00 4.08
6271 9048 7.724061 TGGGATTATAGAAGAATTAACAAGGCC 59.276 37.037 0.00 0.00 0.00 5.19
6309 9090 3.319122 GGCTTTTGTCAGACCAACAGATT 59.681 43.478 0.00 0.00 0.00 2.40
6492 9281 5.057149 GTCAGACTTACTCAAAAAGCCTCA 58.943 41.667 0.00 0.00 0.00 3.86
6493 9282 5.178438 CAGTCAGACTTACTCAAAAAGCCTC 59.822 44.000 0.00 0.00 0.00 4.70
6494 9283 5.059833 CAGTCAGACTTACTCAAAAAGCCT 58.940 41.667 0.00 0.00 0.00 4.58
6500 9289 6.816136 TCATCAACAGTCAGACTTACTCAAA 58.184 36.000 0.00 0.00 0.00 2.69
6507 9297 7.498900 TGTTTAACATCATCAACAGTCAGACTT 59.501 33.333 0.00 0.00 0.00 3.01
7112 9908 7.465245 CGGTTGTAACAAAATGCAAAGAATTGT 60.465 33.333 0.00 0.00 38.85 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.