Multiple sequence alignment - TraesCS4B01G252900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G252900 chr4B 100.000 2399 0 0 1 2399 518688956 518686558 0.000000e+00 4431.0
1 TraesCS4B01G252900 chr4D 93.661 1751 65 20 509 2227 421557839 421556103 0.000000e+00 2577.0
2 TraesCS4B01G252900 chr4A 93.147 1503 59 17 751 2227 42260807 42262291 0.000000e+00 2165.0
3 TraesCS4B01G252900 chr4A 90.580 414 33 5 50 463 191162243 191162650 5.830000e-151 544.0
4 TraesCS4B01G252900 chr4A 95.133 226 7 1 509 730 42254545 42254770 1.050000e-93 353.0
5 TraesCS4B01G252900 chr3B 92.978 413 24 4 51 463 65196451 65196858 4.410000e-167 597.0
6 TraesCS4B01G252900 chr6A 92.067 416 28 5 51 464 74975340 74975752 4.450000e-162 580.0
7 TraesCS4B01G252900 chr5D 91.807 415 28 6 51 463 510563859 510564269 7.440000e-160 573.0
8 TraesCS4B01G252900 chr5B 91.971 411 26 5 53 463 655193886 655194289 9.620000e-159 569.0
9 TraesCS4B01G252900 chr2D 91.408 419 28 7 49 464 44612080 44611667 3.460000e-158 568.0
10 TraesCS4B01G252900 chr2D 80.488 287 47 8 1059 1339 135485688 135485405 6.720000e-51 211.0
11 TraesCS4B01G252900 chr2D 79.290 169 20 9 2225 2379 253813829 253813996 1.170000e-18 104.0
12 TraesCS4B01G252900 chr2D 79.817 109 12 9 2213 2314 344569361 344569256 1.190000e-08 71.3
13 TraesCS4B01G252900 chr7B 90.073 413 38 3 50 461 194116325 194116735 1.260000e-147 532.0
14 TraesCS4B01G252900 chr2A 89.448 417 38 5 51 467 27369784 27370194 2.730000e-144 521.0
15 TraesCS4B01G252900 chr2A 80.139 287 48 8 1059 1339 143276643 143276360 3.130000e-49 206.0
16 TraesCS4B01G252900 chr2A 86.559 186 18 5 2219 2399 402912500 402912683 5.230000e-47 198.0
17 TraesCS4B01G252900 chr7D 89.423 416 35 7 51 464 29308598 29309006 1.270000e-142 516.0
18 TraesCS4B01G252900 chr1B 97.159 176 2 2 2227 2399 119681317 119681492 6.490000e-76 294.0
19 TraesCS4B01G252900 chr6B 93.785 177 7 3 2227 2399 159419966 159420142 1.830000e-66 263.0
20 TraesCS4B01G252900 chr1D 89.773 176 14 3 2227 2398 208189972 208189797 3.100000e-54 222.0
21 TraesCS4B01G252900 chr2B 78.746 287 52 8 1059 1339 193210780 193210497 1.460000e-42 183.0
22 TraesCS4B01G252900 chr1A 89.423 104 8 2 2224 2324 350402311 350402414 6.960000e-26 128.0
23 TraesCS4B01G252900 chr5A 84.314 102 11 4 2223 2320 333450800 333450700 7.060000e-16 95.3
24 TraesCS4B01G252900 chr6D 82.000 100 15 2 2224 2320 28153595 28153496 5.500000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G252900 chr4B 518686558 518688956 2398 True 4431 4431 100.000 1 2399 1 chr4B.!!$R1 2398
1 TraesCS4B01G252900 chr4D 421556103 421557839 1736 True 2577 2577 93.661 509 2227 1 chr4D.!!$R1 1718
2 TraesCS4B01G252900 chr4A 42260807 42262291 1484 False 2165 2165 93.147 751 2227 1 chr4A.!!$F2 1476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.036388 GACTTCCGTTGCATCCTGGA 60.036 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2058 1.070134 GGTTTTGAAACAGAAGGGCCC 59.93 52.381 16.46 16.46 40.63 5.8 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.681706 CAGCTACTGAGACAAGGTGTG 58.318 52.381 0.00 0.00 34.77 3.82
21 22 2.036475 CAGCTACTGAGACAAGGTGTGT 59.964 50.000 0.00 0.00 37.03 3.72
22 23 2.036475 AGCTACTGAGACAAGGTGTGTG 59.964 50.000 0.00 0.00 41.96 3.82
23 24 2.868044 GCTACTGAGACAAGGTGTGTGG 60.868 54.545 0.00 0.00 41.96 4.17
24 25 0.179045 ACTGAGACAAGGTGTGTGGC 60.179 55.000 0.00 0.00 41.96 5.01
25 26 0.179048 CTGAGACAAGGTGTGTGGCA 60.179 55.000 0.00 0.00 41.96 4.92
26 27 0.254462 TGAGACAAGGTGTGTGGCAA 59.746 50.000 0.00 0.00 41.96 4.52
27 28 1.133823 TGAGACAAGGTGTGTGGCAAT 60.134 47.619 0.00 0.00 41.96 3.56
28 29 1.956477 GAGACAAGGTGTGTGGCAATT 59.044 47.619 0.00 0.00 41.96 2.32
29 30 1.682854 AGACAAGGTGTGTGGCAATTG 59.317 47.619 0.00 0.00 41.96 2.32
30 31 0.752054 ACAAGGTGTGTGGCAATTGG 59.248 50.000 7.72 0.00 39.72 3.16
31 32 0.600782 CAAGGTGTGTGGCAATTGGC 60.601 55.000 24.20 24.20 43.74 4.52
47 48 2.125350 GCAAGAGGCCGAGAGTGG 60.125 66.667 0.00 0.00 36.11 4.00
56 57 3.558674 CCGAGAGTGGCAGGAAAAT 57.441 52.632 0.00 0.00 0.00 1.82
57 58 2.691409 CCGAGAGTGGCAGGAAAATA 57.309 50.000 0.00 0.00 0.00 1.40
58 59 3.199880 CCGAGAGTGGCAGGAAAATAT 57.800 47.619 0.00 0.00 0.00 1.28
59 60 2.874701 CCGAGAGTGGCAGGAAAATATG 59.125 50.000 0.00 0.00 0.00 1.78
60 61 3.432186 CCGAGAGTGGCAGGAAAATATGA 60.432 47.826 0.00 0.00 0.00 2.15
61 62 4.191544 CGAGAGTGGCAGGAAAATATGAA 58.808 43.478 0.00 0.00 0.00 2.57
62 63 4.272018 CGAGAGTGGCAGGAAAATATGAAG 59.728 45.833 0.00 0.00 0.00 3.02
63 64 4.530875 AGAGTGGCAGGAAAATATGAAGG 58.469 43.478 0.00 0.00 0.00 3.46
64 65 4.228210 AGAGTGGCAGGAAAATATGAAGGA 59.772 41.667 0.00 0.00 0.00 3.36
65 66 4.530875 AGTGGCAGGAAAATATGAAGGAG 58.469 43.478 0.00 0.00 0.00 3.69
66 67 4.228210 AGTGGCAGGAAAATATGAAGGAGA 59.772 41.667 0.00 0.00 0.00 3.71
67 68 4.949856 GTGGCAGGAAAATATGAAGGAGAA 59.050 41.667 0.00 0.00 0.00 2.87
68 69 4.949856 TGGCAGGAAAATATGAAGGAGAAC 59.050 41.667 0.00 0.00 0.00 3.01
69 70 4.339530 GGCAGGAAAATATGAAGGAGAACC 59.660 45.833 0.00 0.00 0.00 3.62
88 89 3.467226 GGCTACCAGCGCACCCTA 61.467 66.667 11.47 0.00 43.62 3.53
89 90 2.808206 GGCTACCAGCGCACCCTAT 61.808 63.158 11.47 0.00 43.62 2.57
90 91 1.469335 GGCTACCAGCGCACCCTATA 61.469 60.000 11.47 0.00 43.62 1.31
91 92 0.608640 GCTACCAGCGCACCCTATAT 59.391 55.000 11.47 0.00 0.00 0.86
92 93 1.673033 GCTACCAGCGCACCCTATATG 60.673 57.143 11.47 0.00 0.00 1.78
93 94 0.320374 TACCAGCGCACCCTATATGC 59.680 55.000 11.47 0.00 39.81 3.14
190 191 6.795098 TTGTAGTCGTACAAAAAGATGCAT 57.205 33.333 0.00 0.00 44.53 3.96
191 192 6.403333 TGTAGTCGTACAAAAAGATGCATC 57.597 37.500 19.37 19.37 36.15 3.91
192 193 5.929415 TGTAGTCGTACAAAAAGATGCATCA 59.071 36.000 27.81 2.86 36.15 3.07
193 194 5.283060 AGTCGTACAAAAAGATGCATCAC 57.717 39.130 27.81 14.19 0.00 3.06
194 195 4.754618 AGTCGTACAAAAAGATGCATCACA 59.245 37.500 27.81 4.70 0.00 3.58
195 196 5.082059 GTCGTACAAAAAGATGCATCACAG 58.918 41.667 27.81 14.63 0.00 3.66
196 197 4.994217 TCGTACAAAAAGATGCATCACAGA 59.006 37.500 27.81 13.30 0.00 3.41
197 198 5.468409 TCGTACAAAAAGATGCATCACAGAA 59.532 36.000 27.81 4.93 0.00 3.02
198 199 6.149308 TCGTACAAAAAGATGCATCACAGAAT 59.851 34.615 27.81 11.78 0.00 2.40
199 200 6.249893 CGTACAAAAAGATGCATCACAGAATG 59.750 38.462 27.81 18.95 46.00 2.67
200 201 6.335471 ACAAAAAGATGCATCACAGAATGA 57.665 33.333 27.81 0.00 43.13 2.57
201 202 6.154445 ACAAAAAGATGCATCACAGAATGAC 58.846 36.000 27.81 0.00 41.24 3.06
202 203 6.015688 ACAAAAAGATGCATCACAGAATGACT 60.016 34.615 27.81 0.51 41.24 3.41
203 204 6.585695 AAAAGATGCATCACAGAATGACTT 57.414 33.333 27.81 7.04 41.24 3.01
204 205 5.814764 AAGATGCATCACAGAATGACTTC 57.185 39.130 27.81 0.00 41.24 3.01
205 206 4.197750 AGATGCATCACAGAATGACTTCC 58.802 43.478 27.81 0.00 41.24 3.46
206 207 2.349590 TGCATCACAGAATGACTTCCG 58.650 47.619 0.00 0.00 41.24 4.30
207 208 2.289631 TGCATCACAGAATGACTTCCGT 60.290 45.455 0.00 0.00 41.24 4.69
208 209 2.744202 GCATCACAGAATGACTTCCGTT 59.256 45.455 0.00 0.00 41.24 4.44
209 210 3.425359 GCATCACAGAATGACTTCCGTTG 60.425 47.826 0.00 0.00 41.24 4.10
210 211 2.143122 TCACAGAATGACTTCCGTTGC 58.857 47.619 0.00 0.00 39.69 4.17
211 212 1.872952 CACAGAATGACTTCCGTTGCA 59.127 47.619 0.00 0.00 39.69 4.08
212 213 2.485426 CACAGAATGACTTCCGTTGCAT 59.515 45.455 0.00 0.00 39.69 3.96
213 214 2.744202 ACAGAATGACTTCCGTTGCATC 59.256 45.455 0.00 0.00 39.69 3.91
214 215 2.096496 CAGAATGACTTCCGTTGCATCC 59.904 50.000 0.00 0.00 39.69 3.51
215 216 2.026822 AGAATGACTTCCGTTGCATCCT 60.027 45.455 0.00 0.00 31.27 3.24
216 217 1.742761 ATGACTTCCGTTGCATCCTG 58.257 50.000 0.00 0.00 0.00 3.86
217 218 0.321564 TGACTTCCGTTGCATCCTGG 60.322 55.000 0.00 0.00 0.00 4.45
218 219 0.036388 GACTTCCGTTGCATCCTGGA 60.036 55.000 0.00 0.00 0.00 3.86
219 220 0.620556 ACTTCCGTTGCATCCTGGAT 59.379 50.000 2.57 2.57 0.00 3.41
220 221 1.303309 CTTCCGTTGCATCCTGGATC 58.697 55.000 6.13 2.88 0.00 3.36
221 222 0.461870 TTCCGTTGCATCCTGGATCG 60.462 55.000 6.13 7.36 32.00 3.69
222 223 1.143838 CCGTTGCATCCTGGATCGA 59.856 57.895 14.85 4.96 33.65 3.59
223 224 0.461870 CCGTTGCATCCTGGATCGAA 60.462 55.000 14.85 5.22 33.65 3.71
224 225 0.933097 CGTTGCATCCTGGATCGAAG 59.067 55.000 6.13 0.00 33.65 3.79
225 226 1.471501 CGTTGCATCCTGGATCGAAGA 60.472 52.381 6.13 0.00 45.75 2.87
226 227 2.804572 CGTTGCATCCTGGATCGAAGAT 60.805 50.000 6.13 0.00 45.12 2.40
227 228 3.209410 GTTGCATCCTGGATCGAAGATT 58.791 45.455 6.13 0.00 45.12 2.40
228 229 3.117491 TGCATCCTGGATCGAAGATTC 57.883 47.619 6.13 0.00 45.12 2.52
239 240 1.510007 CGAAGATTCGGCGAAAAACG 58.490 50.000 27.40 22.74 46.30 3.60
256 257 8.961294 CGAAAAACGCTATATACAGGTACTAT 57.039 34.615 0.00 0.00 33.09 2.12
262 263 7.928103 ACGCTATATACAGGTACTATACATGC 58.072 38.462 0.80 0.00 43.70 4.06
263 264 7.774157 ACGCTATATACAGGTACTATACATGCT 59.226 37.037 0.80 0.00 43.70 3.79
264 265 9.269453 CGCTATATACAGGTACTATACATGCTA 57.731 37.037 0.80 0.00 43.70 3.49
272 273 8.459635 ACAGGTACTATACATGCTATATTGTCG 58.540 37.037 0.80 0.00 43.70 4.35
273 274 8.459635 CAGGTACTATACATGCTATATTGTCGT 58.540 37.037 0.00 0.00 36.02 4.34
274 275 8.675504 AGGTACTATACATGCTATATTGTCGTC 58.324 37.037 0.00 0.00 36.02 4.20
275 276 8.456471 GGTACTATACATGCTATATTGTCGTCA 58.544 37.037 0.00 0.00 0.00 4.35
281 282 9.929180 ATACATGCTATATTGTCGTCATAAACT 57.071 29.630 0.00 0.00 0.00 2.66
282 283 8.662781 ACATGCTATATTGTCGTCATAAACTT 57.337 30.769 0.00 0.00 0.00 2.66
283 284 8.551205 ACATGCTATATTGTCGTCATAAACTTG 58.449 33.333 0.00 0.00 0.00 3.16
284 285 8.551205 CATGCTATATTGTCGTCATAAACTTGT 58.449 33.333 0.00 0.00 0.00 3.16
285 286 8.126871 TGCTATATTGTCGTCATAAACTTGTC 57.873 34.615 0.00 0.00 0.00 3.18
286 287 7.979537 TGCTATATTGTCGTCATAAACTTGTCT 59.020 33.333 0.00 0.00 0.00 3.41
287 288 8.818057 GCTATATTGTCGTCATAAACTTGTCTT 58.182 33.333 0.00 0.00 0.00 3.01
309 310 5.697473 TTTTTGCCGTGAAGTCAATATGA 57.303 34.783 0.00 0.00 0.00 2.15
310 311 5.697473 TTTTGCCGTGAAGTCAATATGAA 57.303 34.783 0.00 0.00 0.00 2.57
311 312 5.895636 TTTGCCGTGAAGTCAATATGAAT 57.104 34.783 0.00 0.00 0.00 2.57
312 313 5.484173 TTGCCGTGAAGTCAATATGAATC 57.516 39.130 0.00 0.00 0.00 2.52
313 314 4.512484 TGCCGTGAAGTCAATATGAATCA 58.488 39.130 0.00 0.00 0.00 2.57
314 315 5.125356 TGCCGTGAAGTCAATATGAATCAT 58.875 37.500 0.00 0.00 30.53 2.45
315 316 5.589855 TGCCGTGAAGTCAATATGAATCATT 59.410 36.000 0.00 0.00 30.53 2.57
316 317 6.095300 TGCCGTGAAGTCAATATGAATCATTT 59.905 34.615 0.00 0.00 30.53 2.32
317 318 6.974622 GCCGTGAAGTCAATATGAATCATTTT 59.025 34.615 0.00 0.00 30.53 1.82
318 319 7.166473 GCCGTGAAGTCAATATGAATCATTTTC 59.834 37.037 0.00 0.00 30.53 2.29
319 320 8.400947 CCGTGAAGTCAATATGAATCATTTTCT 58.599 33.333 0.00 0.00 30.53 2.52
320 321 9.778993 CGTGAAGTCAATATGAATCATTTTCTT 57.221 29.630 0.00 1.01 30.53 2.52
325 326 8.689972 AGTCAATATGAATCATTTTCTTGTCCC 58.310 33.333 0.00 0.00 0.00 4.46
326 327 8.469200 GTCAATATGAATCATTTTCTTGTCCCA 58.531 33.333 0.00 0.00 0.00 4.37
327 328 8.469200 TCAATATGAATCATTTTCTTGTCCCAC 58.531 33.333 0.00 0.00 0.00 4.61
328 329 5.665916 ATGAATCATTTTCTTGTCCCACC 57.334 39.130 0.00 0.00 0.00 4.61
329 330 4.739793 TGAATCATTTTCTTGTCCCACCT 58.260 39.130 0.00 0.00 0.00 4.00
330 331 5.147032 TGAATCATTTTCTTGTCCCACCTT 58.853 37.500 0.00 0.00 0.00 3.50
331 332 5.602145 TGAATCATTTTCTTGTCCCACCTTT 59.398 36.000 0.00 0.00 0.00 3.11
332 333 6.099557 TGAATCATTTTCTTGTCCCACCTTTT 59.900 34.615 0.00 0.00 0.00 2.27
333 334 5.529581 TCATTTTCTTGTCCCACCTTTTC 57.470 39.130 0.00 0.00 0.00 2.29
334 335 4.959210 TCATTTTCTTGTCCCACCTTTTCA 59.041 37.500 0.00 0.00 0.00 2.69
335 336 5.068987 TCATTTTCTTGTCCCACCTTTTCAG 59.931 40.000 0.00 0.00 0.00 3.02
336 337 3.943671 TTCTTGTCCCACCTTTTCAGA 57.056 42.857 0.00 0.00 0.00 3.27
337 338 3.208747 TCTTGTCCCACCTTTTCAGAC 57.791 47.619 0.00 0.00 0.00 3.51
338 339 1.873591 CTTGTCCCACCTTTTCAGACG 59.126 52.381 0.00 0.00 0.00 4.18
339 340 1.124780 TGTCCCACCTTTTCAGACGA 58.875 50.000 0.00 0.00 0.00 4.20
340 341 1.487142 TGTCCCACCTTTTCAGACGAA 59.513 47.619 0.00 0.00 0.00 3.85
341 342 2.105821 TGTCCCACCTTTTCAGACGAAT 59.894 45.455 0.00 0.00 0.00 3.34
342 343 3.325425 TGTCCCACCTTTTCAGACGAATA 59.675 43.478 0.00 0.00 0.00 1.75
343 344 3.933332 GTCCCACCTTTTCAGACGAATAG 59.067 47.826 0.00 0.00 31.94 1.73
344 345 3.835978 TCCCACCTTTTCAGACGAATAGA 59.164 43.478 0.00 0.00 33.43 1.98
345 346 4.285003 TCCCACCTTTTCAGACGAATAGAA 59.715 41.667 0.00 0.00 33.43 2.10
346 347 5.045869 TCCCACCTTTTCAGACGAATAGAAT 60.046 40.000 0.00 0.00 33.43 2.40
347 348 6.155565 TCCCACCTTTTCAGACGAATAGAATA 59.844 38.462 0.00 0.00 33.43 1.75
348 349 6.258068 CCCACCTTTTCAGACGAATAGAATAC 59.742 42.308 0.00 0.00 33.43 1.89
349 350 6.258068 CCACCTTTTCAGACGAATAGAATACC 59.742 42.308 0.00 0.00 33.43 2.73
350 351 7.042335 CACCTTTTCAGACGAATAGAATACCT 58.958 38.462 0.00 0.00 33.43 3.08
351 352 7.010552 CACCTTTTCAGACGAATAGAATACCTG 59.989 40.741 0.00 0.00 33.43 4.00
352 353 7.093465 ACCTTTTCAGACGAATAGAATACCTGA 60.093 37.037 0.00 0.00 33.43 3.86
353 354 7.928706 CCTTTTCAGACGAATAGAATACCTGAT 59.071 37.037 0.00 0.00 33.43 2.90
354 355 8.873215 TTTTCAGACGAATAGAATACCTGATC 57.127 34.615 0.00 0.00 0.00 2.92
355 356 7.582667 TTCAGACGAATAGAATACCTGATCA 57.417 36.000 0.00 0.00 0.00 2.92
356 357 7.767250 TCAGACGAATAGAATACCTGATCAT 57.233 36.000 0.00 0.00 0.00 2.45
357 358 7.597386 TCAGACGAATAGAATACCTGATCATG 58.403 38.462 0.00 0.00 0.00 3.07
358 359 7.231519 TCAGACGAATAGAATACCTGATCATGT 59.768 37.037 8.74 8.74 0.00 3.21
359 360 7.869937 CAGACGAATAGAATACCTGATCATGTT 59.130 37.037 9.01 0.00 0.00 2.71
360 361 8.424918 AGACGAATAGAATACCTGATCATGTTT 58.575 33.333 9.01 0.00 0.00 2.83
361 362 8.370493 ACGAATAGAATACCTGATCATGTTTG 57.630 34.615 9.01 0.00 0.00 2.93
362 363 8.204160 ACGAATAGAATACCTGATCATGTTTGA 58.796 33.333 9.01 0.00 36.00 2.69
363 364 9.212641 CGAATAGAATACCTGATCATGTTTGAT 57.787 33.333 9.01 0.00 45.39 2.57
366 367 7.814264 AGAATACCTGATCATGTTTGATTCC 57.186 36.000 9.01 0.00 42.73 3.01
367 368 7.348815 AGAATACCTGATCATGTTTGATTCCA 58.651 34.615 9.01 0.00 42.73 3.53
368 369 7.835682 AGAATACCTGATCATGTTTGATTCCAA 59.164 33.333 9.01 0.00 42.73 3.53
369 370 7.959658 ATACCTGATCATGTTTGATTCCAAA 57.040 32.000 9.01 0.00 42.73 3.28
370 371 6.669125 ACCTGATCATGTTTGATTCCAAAA 57.331 33.333 0.00 0.00 42.73 2.44
371 372 6.694447 ACCTGATCATGTTTGATTCCAAAAG 58.306 36.000 0.00 0.00 42.73 2.27
372 373 6.494491 ACCTGATCATGTTTGATTCCAAAAGA 59.506 34.615 0.00 0.00 42.73 2.52
373 374 7.033791 CCTGATCATGTTTGATTCCAAAAGAG 58.966 38.462 0.00 0.00 42.73 2.85
374 375 7.094075 CCTGATCATGTTTGATTCCAAAAGAGA 60.094 37.037 0.00 0.00 42.73 3.10
375 376 8.357290 TGATCATGTTTGATTCCAAAAGAGAT 57.643 30.769 0.00 0.00 42.73 2.75
376 377 8.809066 TGATCATGTTTGATTCCAAAAGAGATT 58.191 29.630 0.00 0.00 42.73 2.40
377 378 9.649167 GATCATGTTTGATTCCAAAAGAGATTT 57.351 29.630 0.00 0.00 42.73 2.17
378 379 8.821147 TCATGTTTGATTCCAAAAGAGATTTG 57.179 30.769 0.00 0.00 46.54 2.32
436 437 2.742372 GCATATAGGGTGCGCGGG 60.742 66.667 8.83 0.00 32.29 6.13
437 438 2.741092 CATATAGGGTGCGCGGGT 59.259 61.111 8.83 0.00 0.00 5.28
438 439 1.969085 CATATAGGGTGCGCGGGTA 59.031 57.895 8.83 0.00 0.00 3.69
439 440 0.389426 CATATAGGGTGCGCGGGTAC 60.389 60.000 12.29 12.29 0.00 3.34
454 455 1.411041 GGTACCCGAGAGCCATAAGT 58.589 55.000 0.00 0.00 0.00 2.24
455 456 1.340568 GGTACCCGAGAGCCATAAGTC 59.659 57.143 0.00 0.00 0.00 3.01
456 457 1.340568 GTACCCGAGAGCCATAAGTCC 59.659 57.143 0.00 0.00 0.00 3.85
457 458 1.364171 CCCGAGAGCCATAAGTCCG 59.636 63.158 0.00 0.00 0.00 4.79
458 459 1.300233 CCGAGAGCCATAAGTCCGC 60.300 63.158 0.00 0.00 0.00 5.54
459 460 1.658717 CGAGAGCCATAAGTCCGCG 60.659 63.158 0.00 0.00 0.00 6.46
460 461 1.437986 GAGAGCCATAAGTCCGCGT 59.562 57.895 4.92 0.00 0.00 6.01
461 462 0.595310 GAGAGCCATAAGTCCGCGTC 60.595 60.000 4.92 0.00 0.00 5.19
462 463 1.591863 GAGCCATAAGTCCGCGTCC 60.592 63.158 4.92 0.00 0.00 4.79
463 464 2.960129 GCCATAAGTCCGCGTCCG 60.960 66.667 4.92 0.00 0.00 4.79
464 465 2.802792 CCATAAGTCCGCGTCCGA 59.197 61.111 4.92 0.00 36.29 4.55
465 466 1.299165 CCATAAGTCCGCGTCCGAG 60.299 63.158 4.92 0.00 36.29 4.63
466 467 1.299165 CATAAGTCCGCGTCCGAGG 60.299 63.158 4.92 2.84 36.29 4.63
467 468 2.487532 ATAAGTCCGCGTCCGAGGG 61.488 63.158 4.92 0.54 35.72 4.30
468 469 3.925630 TAAGTCCGCGTCCGAGGGT 62.926 63.158 4.92 0.00 35.72 4.34
475 476 4.742201 CGTCCGAGGGTGGCACTG 62.742 72.222 18.45 5.24 0.00 3.66
478 479 3.390521 CCGAGGGTGGCACTGCTA 61.391 66.667 18.45 0.00 0.00 3.49
479 480 2.125512 CGAGGGTGGCACTGCTAC 60.126 66.667 18.45 8.97 39.31 3.58
480 481 2.650116 CGAGGGTGGCACTGCTACT 61.650 63.158 18.45 8.17 39.93 2.57
481 482 1.320344 CGAGGGTGGCACTGCTACTA 61.320 60.000 18.45 0.00 39.93 1.82
482 483 1.123928 GAGGGTGGCACTGCTACTAT 58.876 55.000 18.45 6.17 39.93 2.12
483 484 1.069358 GAGGGTGGCACTGCTACTATC 59.931 57.143 18.45 10.94 39.93 2.08
484 485 0.830648 GGGTGGCACTGCTACTATCA 59.169 55.000 18.45 0.00 39.93 2.15
485 486 1.202580 GGGTGGCACTGCTACTATCAG 60.203 57.143 18.45 0.00 39.93 2.90
486 487 1.482593 GGTGGCACTGCTACTATCAGT 59.517 52.381 18.45 0.00 44.87 3.41
641 645 1.143073 AGATTTCCTACCATTCCCGGC 59.857 52.381 0.00 0.00 0.00 6.13
676 680 2.287308 TGCGAAATTCAAACCTCCAACG 60.287 45.455 0.00 0.00 0.00 4.10
677 681 2.031508 GCGAAATTCAAACCTCCAACGA 60.032 45.455 0.00 0.00 0.00 3.85
678 682 3.549221 GCGAAATTCAAACCTCCAACGAA 60.549 43.478 0.00 0.00 0.00 3.85
679 683 4.602995 CGAAATTCAAACCTCCAACGAAA 58.397 39.130 0.00 0.00 0.00 3.46
680 684 5.038033 CGAAATTCAAACCTCCAACGAAAA 58.962 37.500 0.00 0.00 0.00 2.29
681 685 5.051973 CGAAATTCAAACCTCCAACGAAAAC 60.052 40.000 0.00 0.00 0.00 2.43
682 686 4.993029 ATTCAAACCTCCAACGAAAACA 57.007 36.364 0.00 0.00 0.00 2.83
683 687 4.364415 TTCAAACCTCCAACGAAAACAG 57.636 40.909 0.00 0.00 0.00 3.16
684 688 3.611970 TCAAACCTCCAACGAAAACAGA 58.388 40.909 0.00 0.00 0.00 3.41
693 697 2.872245 CAACGAAAACAGAGAGGAAGCA 59.128 45.455 0.00 0.00 0.00 3.91
695 699 1.462670 CGAAAACAGAGAGGAAGCAGC 59.537 52.381 0.00 0.00 0.00 5.25
748 753 2.280524 CACCAACCGACGCCAGAA 60.281 61.111 0.00 0.00 0.00 3.02
749 754 2.030562 ACCAACCGACGCCAGAAG 59.969 61.111 0.00 0.00 0.00 2.85
910 935 1.203758 CCACCGCTTTTAAATCCCCAC 59.796 52.381 0.00 0.00 0.00 4.61
911 936 1.203758 CACCGCTTTTAAATCCCCACC 59.796 52.381 0.00 0.00 0.00 4.61
912 937 0.454196 CCGCTTTTAAATCCCCACCG 59.546 55.000 0.00 0.00 0.00 4.94
950 975 2.281091 CGGCCTACCCACCCTCTA 59.719 66.667 0.00 0.00 0.00 2.43
954 981 1.049289 GCCTACCCACCCTCTACCTG 61.049 65.000 0.00 0.00 0.00 4.00
957 984 1.817572 TACCCACCCTCTACCTGCCA 61.818 60.000 0.00 0.00 0.00 4.92
1446 1486 7.334749 TCGTTTATGCTTCGAGATAAAATTCG 58.665 34.615 7.52 7.69 38.13 3.34
1510 1550 2.571212 TGAGTTGCCTGTAGGTTGTTG 58.429 47.619 0.00 0.00 37.57 3.33
1675 1718 1.734465 GTCACCAAGCCTTTCAGATCG 59.266 52.381 0.00 0.00 0.00 3.69
1678 1721 2.353889 CACCAAGCCTTTCAGATCGATG 59.646 50.000 0.54 0.00 0.00 3.84
1741 1784 3.260632 GTGGAACAAGGCCCAAATTATGT 59.739 43.478 0.00 0.00 44.16 2.29
1756 1799 2.435372 TATGTGCAATCCACCCTTCC 57.565 50.000 0.00 0.00 44.01 3.46
1822 1865 6.655078 ATTTGAATTTTCTGTGCCAGTAGT 57.345 33.333 2.68 0.00 32.61 2.73
1898 1941 8.803235 TCTCACTTTTAGTATGCTCTGTCTTTA 58.197 33.333 0.00 0.00 0.00 1.85
1899 1942 8.988064 TCACTTTTAGTATGCTCTGTCTTTAG 57.012 34.615 0.00 0.00 0.00 1.85
1901 1944 9.856488 CACTTTTAGTATGCTCTGTCTTTAGTA 57.144 33.333 0.00 0.00 0.00 1.82
1984 2029 5.675538 AGCATCTATGAACTCAAGTAACCC 58.324 41.667 0.00 0.00 0.00 4.11
2120 2169 9.428097 CTATCTAATTGCTGAATATGCAGTACA 57.572 33.333 12.50 0.00 41.71 2.90
2155 2205 3.266772 TGTGCCTCCCAGTCTTTTCATAT 59.733 43.478 0.00 0.00 0.00 1.78
2182 2232 8.463930 TTTATGAAAAGGAACATTGTGTCTCT 57.536 30.769 0.00 0.00 0.00 3.10
2242 2292 2.953466 TACACTAGATGACCCGTTGC 57.047 50.000 0.00 0.00 0.00 4.17
2243 2293 0.108804 ACACTAGATGACCCGTTGCG 60.109 55.000 0.00 0.00 0.00 4.85
2244 2294 1.153628 ACTAGATGACCCGTTGCGC 60.154 57.895 0.00 0.00 0.00 6.09
2245 2295 1.883084 CTAGATGACCCGTTGCGCC 60.883 63.158 4.18 0.00 0.00 6.53
2246 2296 3.379865 TAGATGACCCGTTGCGCCC 62.380 63.158 4.18 0.00 0.00 6.13
2248 2298 4.424711 ATGACCCGTTGCGCCCAT 62.425 61.111 4.18 0.00 0.00 4.00
2271 2321 2.432972 GGCCAAACGCAAGCCATG 60.433 61.111 0.00 0.00 46.34 3.66
2272 2322 2.339712 GCCAAACGCAAGCCATGT 59.660 55.556 0.00 0.00 45.62 3.21
2273 2323 1.583986 GCCAAACGCAAGCCATGTA 59.416 52.632 0.00 0.00 45.62 2.29
2274 2324 0.173255 GCCAAACGCAAGCCATGTAT 59.827 50.000 0.00 0.00 45.62 2.29
2275 2325 1.404047 GCCAAACGCAAGCCATGTATT 60.404 47.619 0.00 0.00 45.62 1.89
2276 2326 2.930455 GCCAAACGCAAGCCATGTATTT 60.930 45.455 0.00 0.00 45.62 1.40
2277 2327 3.324993 CCAAACGCAAGCCATGTATTTT 58.675 40.909 0.00 0.00 45.62 1.82
2278 2328 4.489810 CCAAACGCAAGCCATGTATTTTA 58.510 39.130 0.00 0.00 45.62 1.52
2279 2329 4.926238 CCAAACGCAAGCCATGTATTTTAA 59.074 37.500 0.00 0.00 45.62 1.52
2280 2330 5.062058 CCAAACGCAAGCCATGTATTTTAAG 59.938 40.000 0.00 0.00 45.62 1.85
2281 2331 5.637006 AACGCAAGCCATGTATTTTAAGA 57.363 34.783 0.00 0.00 45.62 2.10
2282 2332 5.637006 ACGCAAGCCATGTATTTTAAGAA 57.363 34.783 0.00 0.00 45.62 2.52
2283 2333 6.207691 ACGCAAGCCATGTATTTTAAGAAT 57.792 33.333 0.00 0.00 45.62 2.40
2284 2334 6.035843 ACGCAAGCCATGTATTTTAAGAATG 58.964 36.000 0.00 0.00 45.62 2.67
2285 2335 6.035843 CGCAAGCCATGTATTTTAAGAATGT 58.964 36.000 0.00 0.00 0.00 2.71
2286 2336 6.020440 CGCAAGCCATGTATTTTAAGAATGTG 60.020 38.462 0.00 0.00 0.00 3.21
2287 2337 6.237915 GCAAGCCATGTATTTTAAGAATGTGC 60.238 38.462 0.00 0.00 0.00 4.57
2288 2338 6.528537 AGCCATGTATTTTAAGAATGTGCA 57.471 33.333 0.00 0.00 0.00 4.57
2289 2339 7.116075 AGCCATGTATTTTAAGAATGTGCAT 57.884 32.000 0.00 0.00 0.00 3.96
2290 2340 7.558604 AGCCATGTATTTTAAGAATGTGCATT 58.441 30.769 0.00 0.00 0.00 3.56
2291 2341 8.694540 AGCCATGTATTTTAAGAATGTGCATTA 58.305 29.630 0.00 0.00 0.00 1.90
2292 2342 9.311916 GCCATGTATTTTAAGAATGTGCATTAA 57.688 29.630 0.00 0.00 0.00 1.40
2358 2408 6.932356 CAGTTGGCATACATCTGAACTTAT 57.068 37.500 0.00 0.00 45.58 1.73
2359 2409 7.325660 CAGTTGGCATACATCTGAACTTATT 57.674 36.000 0.00 0.00 45.58 1.40
2360 2410 7.765307 CAGTTGGCATACATCTGAACTTATTT 58.235 34.615 0.00 0.00 45.58 1.40
2361 2411 8.892723 CAGTTGGCATACATCTGAACTTATTTA 58.107 33.333 0.00 0.00 45.58 1.40
2362 2412 9.461312 AGTTGGCATACATCTGAACTTATTTAA 57.539 29.630 0.00 0.00 0.00 1.52
2363 2413 9.722056 GTTGGCATACATCTGAACTTATTTAAG 57.278 33.333 0.00 0.00 39.18 1.85
2364 2414 7.930217 TGGCATACATCTGAACTTATTTAAGC 58.070 34.615 0.00 0.00 36.79 3.09
2365 2415 7.555914 TGGCATACATCTGAACTTATTTAAGCA 59.444 33.333 0.00 0.00 36.79 3.91
2366 2416 8.405531 GGCATACATCTGAACTTATTTAAGCAA 58.594 33.333 0.00 0.00 36.79 3.91
2367 2417 9.787532 GCATACATCTGAACTTATTTAAGCAAA 57.212 29.630 0.00 0.00 36.79 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.408050 CACACACCTTGTCTCAGTAGC 58.592 52.381 0.00 0.00 35.67 3.58
3 4 2.868044 GCCACACACCTTGTCTCAGTAG 60.868 54.545 0.00 0.00 35.67 2.57
4 5 1.070134 GCCACACACCTTGTCTCAGTA 59.930 52.381 0.00 0.00 35.67 2.74
5 6 0.179045 GCCACACACCTTGTCTCAGT 60.179 55.000 0.00 0.00 35.67 3.41
6 7 0.179048 TGCCACACACCTTGTCTCAG 60.179 55.000 0.00 0.00 35.67 3.35
7 8 0.254462 TTGCCACACACCTTGTCTCA 59.746 50.000 0.00 0.00 35.67 3.27
8 9 1.609208 ATTGCCACACACCTTGTCTC 58.391 50.000 0.00 0.00 35.67 3.36
9 10 1.682854 CAATTGCCACACACCTTGTCT 59.317 47.619 0.00 0.00 35.67 3.41
11 12 0.752054 CCAATTGCCACACACCTTGT 59.248 50.000 0.00 0.00 39.97 3.16
12 13 0.600782 GCCAATTGCCACACACCTTG 60.601 55.000 0.00 0.00 0.00 3.61
13 14 1.047596 TGCCAATTGCCACACACCTT 61.048 50.000 0.00 0.00 40.16 3.50
14 15 1.047596 TTGCCAATTGCCACACACCT 61.048 50.000 0.00 0.00 40.16 4.00
15 16 0.600782 CTTGCCAATTGCCACACACC 60.601 55.000 0.00 0.00 40.16 4.16
16 17 0.388659 TCTTGCCAATTGCCACACAC 59.611 50.000 0.00 0.00 40.16 3.82
17 18 0.675083 CTCTTGCCAATTGCCACACA 59.325 50.000 0.00 0.00 40.16 3.72
18 19 0.037975 CCTCTTGCCAATTGCCACAC 60.038 55.000 0.00 0.00 40.16 3.82
19 20 1.818959 GCCTCTTGCCAATTGCCACA 61.819 55.000 0.00 0.00 40.16 4.17
20 21 1.079612 GCCTCTTGCCAATTGCCAC 60.080 57.895 0.00 0.00 40.16 5.01
21 22 3.379880 GCCTCTTGCCAATTGCCA 58.620 55.556 0.00 0.00 40.16 4.92
30 31 2.125350 CCACTCTCGGCCTCTTGC 60.125 66.667 0.00 0.00 40.16 4.01
38 39 2.691409 TATTTTCCTGCCACTCTCGG 57.309 50.000 0.00 0.00 0.00 4.63
39 40 3.797039 TCATATTTTCCTGCCACTCTCG 58.203 45.455 0.00 0.00 0.00 4.04
40 41 4.578105 CCTTCATATTTTCCTGCCACTCTC 59.422 45.833 0.00 0.00 0.00 3.20
41 42 4.228210 TCCTTCATATTTTCCTGCCACTCT 59.772 41.667 0.00 0.00 0.00 3.24
42 43 4.526970 TCCTTCATATTTTCCTGCCACTC 58.473 43.478 0.00 0.00 0.00 3.51
43 44 4.228210 TCTCCTTCATATTTTCCTGCCACT 59.772 41.667 0.00 0.00 0.00 4.00
44 45 4.526970 TCTCCTTCATATTTTCCTGCCAC 58.473 43.478 0.00 0.00 0.00 5.01
45 46 4.860802 TCTCCTTCATATTTTCCTGCCA 57.139 40.909 0.00 0.00 0.00 4.92
46 47 4.339530 GGTTCTCCTTCATATTTTCCTGCC 59.660 45.833 0.00 0.00 0.00 4.85
47 48 5.067023 CAGGTTCTCCTTCATATTTTCCTGC 59.933 44.000 0.00 0.00 43.07 4.85
48 49 5.591877 CCAGGTTCTCCTTCATATTTTCCTG 59.408 44.000 0.00 0.00 43.07 3.86
49 50 5.760131 CCAGGTTCTCCTTCATATTTTCCT 58.240 41.667 0.00 0.00 43.07 3.36
50 51 4.339530 GCCAGGTTCTCCTTCATATTTTCC 59.660 45.833 0.00 0.00 43.07 3.13
51 52 5.196695 AGCCAGGTTCTCCTTCATATTTTC 58.803 41.667 0.00 0.00 43.07 2.29
52 53 5.198602 AGCCAGGTTCTCCTTCATATTTT 57.801 39.130 0.00 0.00 43.07 1.82
53 54 4.870021 AGCCAGGTTCTCCTTCATATTT 57.130 40.909 0.00 0.00 43.07 1.40
54 55 4.103311 GGTAGCCAGGTTCTCCTTCATATT 59.897 45.833 0.00 0.00 43.07 1.28
55 56 3.648545 GGTAGCCAGGTTCTCCTTCATAT 59.351 47.826 0.00 0.00 43.07 1.78
56 57 3.039011 GGTAGCCAGGTTCTCCTTCATA 58.961 50.000 0.00 0.00 43.07 2.15
57 58 1.840635 GGTAGCCAGGTTCTCCTTCAT 59.159 52.381 0.00 0.00 43.07 2.57
58 59 1.276622 GGTAGCCAGGTTCTCCTTCA 58.723 55.000 0.00 0.00 43.07 3.02
59 60 1.276622 TGGTAGCCAGGTTCTCCTTC 58.723 55.000 0.00 0.00 43.07 3.46
60 61 3.494561 TGGTAGCCAGGTTCTCCTT 57.505 52.632 0.00 0.00 43.07 3.36
71 72 1.469335 TATAGGGTGCGCTGGTAGCC 61.469 60.000 9.73 7.35 45.54 3.93
72 73 0.608640 ATATAGGGTGCGCTGGTAGC 59.391 55.000 9.73 0.00 38.02 3.58
73 74 1.673033 GCATATAGGGTGCGCTGGTAG 60.673 57.143 9.73 0.00 32.29 3.18
74 75 0.320374 GCATATAGGGTGCGCTGGTA 59.680 55.000 9.73 0.00 32.29 3.25
75 76 1.071471 GCATATAGGGTGCGCTGGT 59.929 57.895 9.73 0.00 32.29 4.00
76 77 3.972227 GCATATAGGGTGCGCTGG 58.028 61.111 9.73 0.00 32.29 4.85
150 151 9.817809 ACGACTACAATACTTGATCATGTTTAT 57.182 29.630 18.30 5.52 0.00 1.40
152 153 9.084164 GTACGACTACAATACTTGATCATGTTT 57.916 33.333 18.30 8.93 0.00 2.83
153 154 8.248253 TGTACGACTACAATACTTGATCATGTT 58.752 33.333 18.30 4.52 29.36 2.71
154 155 7.768240 TGTACGACTACAATACTTGATCATGT 58.232 34.615 17.37 17.37 29.36 3.21
155 156 8.628882 TTGTACGACTACAATACTTGATCATG 57.371 34.615 7.04 7.04 37.85 3.07
156 157 9.647797 TTTTGTACGACTACAATACTTGATCAT 57.352 29.630 0.00 0.00 41.53 2.45
157 158 9.478768 TTTTTGTACGACTACAATACTTGATCA 57.521 29.630 0.00 0.00 41.53 2.92
158 159 9.953825 CTTTTTGTACGACTACAATACTTGATC 57.046 33.333 0.00 0.00 41.53 2.92
159 160 9.701098 TCTTTTTGTACGACTACAATACTTGAT 57.299 29.630 0.00 0.00 41.53 2.57
160 161 9.701098 ATCTTTTTGTACGACTACAATACTTGA 57.299 29.630 0.00 0.00 41.53 3.02
161 162 9.741168 CATCTTTTTGTACGACTACAATACTTG 57.259 33.333 0.00 0.00 41.53 3.16
162 163 8.440833 GCATCTTTTTGTACGACTACAATACTT 58.559 33.333 0.00 0.00 41.53 2.24
163 164 7.601130 TGCATCTTTTTGTACGACTACAATACT 59.399 33.333 0.00 0.00 41.53 2.12
164 165 7.735500 TGCATCTTTTTGTACGACTACAATAC 58.264 34.615 0.00 0.00 41.53 1.89
165 166 7.892778 TGCATCTTTTTGTACGACTACAATA 57.107 32.000 0.00 0.00 41.53 1.90
166 167 6.795098 TGCATCTTTTTGTACGACTACAAT 57.205 33.333 0.00 0.00 41.53 2.71
167 168 6.425417 TGATGCATCTTTTTGTACGACTACAA 59.575 34.615 26.32 0.00 40.47 2.41
168 169 5.929415 TGATGCATCTTTTTGTACGACTACA 59.071 36.000 26.32 0.00 0.00 2.74
169 170 6.128661 TGTGATGCATCTTTTTGTACGACTAC 60.129 38.462 26.32 11.79 0.00 2.73
170 171 5.929415 TGTGATGCATCTTTTTGTACGACTA 59.071 36.000 26.32 0.00 0.00 2.59
171 172 4.754618 TGTGATGCATCTTTTTGTACGACT 59.245 37.500 26.32 0.00 0.00 4.18
172 173 5.029650 TGTGATGCATCTTTTTGTACGAC 57.970 39.130 26.32 12.86 0.00 4.34
173 174 4.994217 TCTGTGATGCATCTTTTTGTACGA 59.006 37.500 26.32 12.80 0.00 3.43
174 175 5.281693 TCTGTGATGCATCTTTTTGTACG 57.718 39.130 26.32 11.02 0.00 3.67
175 176 7.272084 GTCATTCTGTGATGCATCTTTTTGTAC 59.728 37.037 26.32 14.90 39.48 2.90
176 177 7.175467 AGTCATTCTGTGATGCATCTTTTTGTA 59.825 33.333 26.32 2.27 39.48 2.41
177 178 6.015688 AGTCATTCTGTGATGCATCTTTTTGT 60.016 34.615 26.32 7.22 39.48 2.83
178 179 6.387465 AGTCATTCTGTGATGCATCTTTTTG 58.613 36.000 26.32 15.71 39.48 2.44
179 180 6.585695 AGTCATTCTGTGATGCATCTTTTT 57.414 33.333 26.32 5.12 39.48 1.94
180 181 6.349944 GGAAGTCATTCTGTGATGCATCTTTT 60.350 38.462 26.32 4.11 39.48 2.27
181 182 5.125097 GGAAGTCATTCTGTGATGCATCTTT 59.875 40.000 26.32 3.43 39.48 2.52
182 183 4.639310 GGAAGTCATTCTGTGATGCATCTT 59.361 41.667 26.32 9.03 39.48 2.40
183 184 4.197750 GGAAGTCATTCTGTGATGCATCT 58.802 43.478 26.32 3.04 39.48 2.90
184 185 3.002042 CGGAAGTCATTCTGTGATGCATC 59.998 47.826 20.14 20.14 39.48 3.91
185 186 2.941064 CGGAAGTCATTCTGTGATGCAT 59.059 45.455 0.00 0.00 39.48 3.96
186 187 2.349590 CGGAAGTCATTCTGTGATGCA 58.650 47.619 0.00 0.00 39.48 3.96
195 196 5.028212 CCAGGATGCAACGGAAGTCATTC 62.028 52.174 0.00 0.00 38.18 2.67
196 197 3.201225 CCAGGATGCAACGGAAGTCATT 61.201 50.000 0.00 0.00 38.18 2.57
197 198 1.679944 CCAGGATGCAACGGAAGTCAT 60.680 52.381 0.00 0.00 38.18 3.06
198 199 0.321564 CCAGGATGCAACGGAAGTCA 60.322 55.000 0.00 0.00 38.18 3.41
199 200 0.036388 TCCAGGATGCAACGGAAGTC 60.036 55.000 0.00 0.00 38.18 3.01
200 201 0.620556 ATCCAGGATGCAACGGAAGT 59.379 50.000 0.00 0.00 40.81 3.01
201 202 1.303309 GATCCAGGATGCAACGGAAG 58.697 55.000 6.70 0.00 31.97 3.46
202 203 0.461870 CGATCCAGGATGCAACGGAA 60.462 55.000 6.70 0.00 31.97 4.30
203 204 1.143838 CGATCCAGGATGCAACGGA 59.856 57.895 6.70 0.00 31.97 4.69
204 205 0.461870 TTCGATCCAGGATGCAACGG 60.462 55.000 6.70 0.00 31.97 4.44
205 206 0.933097 CTTCGATCCAGGATGCAACG 59.067 55.000 6.70 4.15 31.97 4.10
206 207 2.315925 TCTTCGATCCAGGATGCAAC 57.684 50.000 6.70 0.00 31.97 4.17
207 208 3.470709 GAATCTTCGATCCAGGATGCAA 58.529 45.455 6.70 0.00 31.97 4.08
208 209 3.117491 GAATCTTCGATCCAGGATGCA 57.883 47.619 6.70 0.00 31.97 3.96
231 232 8.961294 ATAGTACCTGTATATAGCGTTTTTCG 57.039 34.615 0.00 0.00 43.12 3.46
236 237 8.404000 GCATGTATAGTACCTGTATATAGCGTT 58.596 37.037 0.00 0.00 0.00 4.84
237 238 7.774157 AGCATGTATAGTACCTGTATATAGCGT 59.226 37.037 0.00 0.00 0.00 5.07
238 239 8.155821 AGCATGTATAGTACCTGTATATAGCG 57.844 38.462 0.00 0.00 0.00 4.26
246 247 8.459635 CGACAATATAGCATGTATAGTACCTGT 58.540 37.037 0.00 0.00 0.00 4.00
247 248 8.459635 ACGACAATATAGCATGTATAGTACCTG 58.540 37.037 0.00 0.00 0.00 4.00
248 249 8.577048 ACGACAATATAGCATGTATAGTACCT 57.423 34.615 0.00 0.00 0.00 3.08
249 250 8.456471 TGACGACAATATAGCATGTATAGTACC 58.544 37.037 0.00 0.00 0.00 3.34
255 256 9.929180 AGTTTATGACGACAATATAGCATGTAT 57.071 29.630 0.00 0.00 0.00 2.29
256 257 9.758651 AAGTTTATGACGACAATATAGCATGTA 57.241 29.630 0.00 0.00 0.00 2.29
257 258 8.551205 CAAGTTTATGACGACAATATAGCATGT 58.449 33.333 0.00 0.00 0.00 3.21
258 259 8.551205 ACAAGTTTATGACGACAATATAGCATG 58.449 33.333 0.00 0.00 0.00 4.06
259 260 8.662781 ACAAGTTTATGACGACAATATAGCAT 57.337 30.769 0.00 0.00 0.00 3.79
260 261 7.979537 AGACAAGTTTATGACGACAATATAGCA 59.020 33.333 0.00 0.00 0.00 3.49
261 262 8.354011 AGACAAGTTTATGACGACAATATAGC 57.646 34.615 0.00 0.00 0.00 2.97
287 288 5.697473 TCATATTGACTTCACGGCAAAAA 57.303 34.783 0.00 0.00 0.00 1.94
288 289 5.697473 TTCATATTGACTTCACGGCAAAA 57.303 34.783 0.00 0.00 0.00 2.44
289 290 5.414144 TGATTCATATTGACTTCACGGCAAA 59.586 36.000 0.00 0.00 0.00 3.68
290 291 4.940654 TGATTCATATTGACTTCACGGCAA 59.059 37.500 0.00 0.00 0.00 4.52
291 292 4.512484 TGATTCATATTGACTTCACGGCA 58.488 39.130 0.00 0.00 0.00 5.69
292 293 5.679734 ATGATTCATATTGACTTCACGGC 57.320 39.130 0.00 0.00 0.00 5.68
293 294 8.400947 AGAAAATGATTCATATTGACTTCACGG 58.599 33.333 0.00 0.00 0.00 4.94
294 295 9.778993 AAGAAAATGATTCATATTGACTTCACG 57.221 29.630 0.00 0.00 0.00 4.35
299 300 8.689972 GGGACAAGAAAATGATTCATATTGACT 58.310 33.333 15.20 4.47 0.00 3.41
300 301 8.469200 TGGGACAAGAAAATGATTCATATTGAC 58.531 33.333 15.20 11.13 31.92 3.18
301 302 8.469200 GTGGGACAAGAAAATGATTCATATTGA 58.531 33.333 15.20 0.00 44.16 2.57
302 303 7.707893 GGTGGGACAAGAAAATGATTCATATTG 59.292 37.037 0.00 6.05 44.16 1.90
303 304 7.620888 AGGTGGGACAAGAAAATGATTCATATT 59.379 33.333 0.00 0.00 44.16 1.28
304 305 7.128077 AGGTGGGACAAGAAAATGATTCATAT 58.872 34.615 0.00 0.00 44.16 1.78
305 306 6.493166 AGGTGGGACAAGAAAATGATTCATA 58.507 36.000 0.00 0.00 44.16 2.15
306 307 5.336102 AGGTGGGACAAGAAAATGATTCAT 58.664 37.500 0.00 0.00 44.16 2.57
307 308 4.739793 AGGTGGGACAAGAAAATGATTCA 58.260 39.130 0.00 0.00 44.16 2.57
308 309 5.728637 AAGGTGGGACAAGAAAATGATTC 57.271 39.130 0.00 0.00 44.16 2.52
309 310 6.099557 TGAAAAGGTGGGACAAGAAAATGATT 59.900 34.615 0.00 0.00 44.16 2.57
310 311 5.602145 TGAAAAGGTGGGACAAGAAAATGAT 59.398 36.000 0.00 0.00 44.16 2.45
311 312 4.959210 TGAAAAGGTGGGACAAGAAAATGA 59.041 37.500 0.00 0.00 44.16 2.57
312 313 5.068987 TCTGAAAAGGTGGGACAAGAAAATG 59.931 40.000 0.00 0.00 44.16 2.32
313 314 5.069119 GTCTGAAAAGGTGGGACAAGAAAAT 59.931 40.000 0.00 0.00 44.16 1.82
314 315 4.401202 GTCTGAAAAGGTGGGACAAGAAAA 59.599 41.667 0.00 0.00 44.16 2.29
315 316 3.951680 GTCTGAAAAGGTGGGACAAGAAA 59.048 43.478 0.00 0.00 44.16 2.52
316 317 3.551846 GTCTGAAAAGGTGGGACAAGAA 58.448 45.455 0.00 0.00 44.16 2.52
317 318 2.484770 CGTCTGAAAAGGTGGGACAAGA 60.485 50.000 0.00 0.00 44.16 3.02
318 319 1.873591 CGTCTGAAAAGGTGGGACAAG 59.126 52.381 0.00 0.00 44.16 3.16
319 320 1.487142 TCGTCTGAAAAGGTGGGACAA 59.513 47.619 0.00 0.00 44.16 3.18
320 321 1.124780 TCGTCTGAAAAGGTGGGACA 58.875 50.000 0.00 0.00 0.00 4.02
321 322 2.249844 TTCGTCTGAAAAGGTGGGAC 57.750 50.000 0.00 0.00 0.00 4.46
322 323 3.835978 TCTATTCGTCTGAAAAGGTGGGA 59.164 43.478 0.00 0.00 37.71 4.37
323 324 4.202245 TCTATTCGTCTGAAAAGGTGGG 57.798 45.455 0.00 0.00 37.71 4.61
324 325 6.258068 GGTATTCTATTCGTCTGAAAAGGTGG 59.742 42.308 0.00 0.00 37.71 4.61
325 326 7.010552 CAGGTATTCTATTCGTCTGAAAAGGTG 59.989 40.741 0.00 0.00 37.71 4.00
326 327 7.042335 CAGGTATTCTATTCGTCTGAAAAGGT 58.958 38.462 0.00 0.00 37.71 3.50
327 328 7.265673 TCAGGTATTCTATTCGTCTGAAAAGG 58.734 38.462 0.00 0.00 37.71 3.11
328 329 8.879342 ATCAGGTATTCTATTCGTCTGAAAAG 57.121 34.615 0.00 0.00 37.71 2.27
329 330 8.474831 TGATCAGGTATTCTATTCGTCTGAAAA 58.525 33.333 0.00 0.00 37.71 2.29
330 331 8.007405 TGATCAGGTATTCTATTCGTCTGAAA 57.993 34.615 0.00 0.00 37.71 2.69
331 332 7.582667 TGATCAGGTATTCTATTCGTCTGAA 57.417 36.000 0.00 0.00 38.76 3.02
332 333 7.231519 ACATGATCAGGTATTCTATTCGTCTGA 59.768 37.037 12.06 0.00 34.83 3.27
333 334 7.374272 ACATGATCAGGTATTCTATTCGTCTG 58.626 38.462 12.06 0.00 0.00 3.51
334 335 7.531857 ACATGATCAGGTATTCTATTCGTCT 57.468 36.000 12.06 0.00 0.00 4.18
335 336 8.491152 CAAACATGATCAGGTATTCTATTCGTC 58.509 37.037 14.25 0.00 0.00 4.20
336 337 8.204160 TCAAACATGATCAGGTATTCTATTCGT 58.796 33.333 14.25 0.00 0.00 3.85
337 338 8.593492 TCAAACATGATCAGGTATTCTATTCG 57.407 34.615 14.25 0.00 0.00 3.34
340 341 9.512588 GGAATCAAACATGATCAGGTATTCTAT 57.487 33.333 23.41 9.73 0.00 1.98
341 342 8.493607 TGGAATCAAACATGATCAGGTATTCTA 58.506 33.333 23.41 18.67 0.00 2.10
342 343 7.348815 TGGAATCAAACATGATCAGGTATTCT 58.651 34.615 23.41 5.73 0.00 2.40
343 344 7.572523 TGGAATCAAACATGATCAGGTATTC 57.427 36.000 19.24 19.24 0.00 1.75
344 345 7.959658 TTGGAATCAAACATGATCAGGTATT 57.040 32.000 14.25 9.91 0.00 1.89
345 346 7.959658 TTTGGAATCAAACATGATCAGGTAT 57.040 32.000 14.25 0.59 37.89 2.73
346 347 7.669304 TCTTTTGGAATCAAACATGATCAGGTA 59.331 33.333 14.25 0.00 41.97 3.08
347 348 6.494491 TCTTTTGGAATCAAACATGATCAGGT 59.506 34.615 7.30 7.30 41.97 4.00
348 349 6.927416 TCTTTTGGAATCAAACATGATCAGG 58.073 36.000 5.68 5.68 41.97 3.86
349 350 7.823665 TCTCTTTTGGAATCAAACATGATCAG 58.176 34.615 0.00 0.00 41.97 2.90
350 351 7.764141 TCTCTTTTGGAATCAAACATGATCA 57.236 32.000 0.00 0.00 41.97 2.92
351 352 9.649167 AAATCTCTTTTGGAATCAAACATGATC 57.351 29.630 0.00 0.00 41.97 2.92
352 353 9.431887 CAAATCTCTTTTGGAATCAAACATGAT 57.568 29.630 0.00 0.00 41.97 2.45
353 354 8.821147 CAAATCTCTTTTGGAATCAAACATGA 57.179 30.769 0.00 0.00 41.97 3.07
419 420 2.162338 TACCCGCGCACCCTATATGC 62.162 60.000 8.75 0.00 39.81 3.14
420 421 0.389426 GTACCCGCGCACCCTATATG 60.389 60.000 8.75 0.00 0.00 1.78
421 422 1.538687 GGTACCCGCGCACCCTATAT 61.539 60.000 8.75 0.00 0.00 0.86
422 423 2.202395 GGTACCCGCGCACCCTATA 61.202 63.158 8.75 0.00 0.00 1.31
423 424 3.543641 GGTACCCGCGCACCCTAT 61.544 66.667 8.75 0.00 0.00 2.57
436 437 1.340568 GGACTTATGGCTCTCGGGTAC 59.659 57.143 0.00 0.00 0.00 3.34
437 438 1.700955 GGACTTATGGCTCTCGGGTA 58.299 55.000 0.00 0.00 0.00 3.69
438 439 1.392710 CGGACTTATGGCTCTCGGGT 61.393 60.000 0.00 0.00 0.00 5.28
439 440 1.364171 CGGACTTATGGCTCTCGGG 59.636 63.158 0.00 0.00 0.00 5.14
440 441 1.300233 GCGGACTTATGGCTCTCGG 60.300 63.158 0.00 0.00 0.00 4.63
441 442 1.658717 CGCGGACTTATGGCTCTCG 60.659 63.158 0.00 0.00 0.00 4.04
442 443 0.595310 GACGCGGACTTATGGCTCTC 60.595 60.000 12.47 0.00 0.00 3.20
443 444 1.437986 GACGCGGACTTATGGCTCT 59.562 57.895 12.47 0.00 0.00 4.09
444 445 1.591863 GGACGCGGACTTATGGCTC 60.592 63.158 12.47 0.00 0.00 4.70
445 446 2.499685 GGACGCGGACTTATGGCT 59.500 61.111 12.47 0.00 0.00 4.75
446 447 2.960129 CGGACGCGGACTTATGGC 60.960 66.667 12.47 0.00 0.00 4.40
447 448 1.299165 CTCGGACGCGGACTTATGG 60.299 63.158 12.47 0.00 0.00 2.74
448 449 1.299165 CCTCGGACGCGGACTTATG 60.299 63.158 12.47 0.00 0.00 1.90
449 450 2.487532 CCCTCGGACGCGGACTTAT 61.488 63.158 12.47 0.00 0.00 1.73
450 451 3.136123 CCCTCGGACGCGGACTTA 61.136 66.667 12.47 0.00 0.00 2.24
458 459 4.742201 CAGTGCCACCCTCGGACG 62.742 72.222 0.00 0.00 0.00 4.79
460 461 3.897681 TAGCAGTGCCACCCTCGGA 62.898 63.158 12.58 0.00 0.00 4.55
461 462 3.390521 TAGCAGTGCCACCCTCGG 61.391 66.667 12.58 0.00 0.00 4.63
462 463 1.320344 TAGTAGCAGTGCCACCCTCG 61.320 60.000 12.58 0.00 0.00 4.63
463 464 1.069358 GATAGTAGCAGTGCCACCCTC 59.931 57.143 12.58 4.45 0.00 4.30
464 465 1.123928 GATAGTAGCAGTGCCACCCT 58.876 55.000 12.58 5.12 0.00 4.34
465 466 0.830648 TGATAGTAGCAGTGCCACCC 59.169 55.000 12.58 1.52 0.00 4.61
466 467 1.482593 ACTGATAGTAGCAGTGCCACC 59.517 52.381 19.87 0.00 44.39 4.61
467 468 2.969628 ACTGATAGTAGCAGTGCCAC 57.030 50.000 19.87 8.86 44.39 5.01
495 496 9.367160 TGATAGTATCAGTGTGATCCTCAATAA 57.633 33.333 8.84 0.00 38.26 1.40
496 497 8.940397 TGATAGTATCAGTGTGATCCTCAATA 57.060 34.615 8.84 0.00 38.26 1.90
497 498 7.846101 TGATAGTATCAGTGTGATCCTCAAT 57.154 36.000 8.84 0.00 38.26 2.57
498 499 7.846101 ATGATAGTATCAGTGTGATCCTCAA 57.154 36.000 17.52 0.00 43.53 3.02
499 500 7.664758 CAATGATAGTATCAGTGTGATCCTCA 58.335 38.462 25.44 0.00 46.81 3.86
509 510 8.717717 TCAATTCCTTCCAATGATAGTATCAGT 58.282 33.333 17.52 12.71 43.53 3.41
510 511 9.565090 TTCAATTCCTTCCAATGATAGTATCAG 57.435 33.333 17.52 5.81 43.53 2.90
511 512 9.342308 GTTCAATTCCTTCCAATGATAGTATCA 57.658 33.333 15.10 15.10 44.55 2.15
512 513 8.787852 GGTTCAATTCCTTCCAATGATAGTATC 58.212 37.037 2.97 2.97 0.00 2.24
513 514 7.445402 CGGTTCAATTCCTTCCAATGATAGTAT 59.555 37.037 0.00 0.00 0.00 2.12
514 515 6.765989 CGGTTCAATTCCTTCCAATGATAGTA 59.234 38.462 0.00 0.00 0.00 1.82
515 516 5.590259 CGGTTCAATTCCTTCCAATGATAGT 59.410 40.000 0.00 0.00 0.00 2.12
516 517 5.822519 TCGGTTCAATTCCTTCCAATGATAG 59.177 40.000 0.00 0.00 0.00 2.08
517 518 5.750524 TCGGTTCAATTCCTTCCAATGATA 58.249 37.500 0.00 0.00 0.00 2.15
518 519 4.599041 TCGGTTCAATTCCTTCCAATGAT 58.401 39.130 0.00 0.00 0.00 2.45
641 645 1.619526 TTCGCAACGTTCGAATCGGG 61.620 55.000 22.62 10.41 40.49 5.14
676 680 2.225255 GTGCTGCTTCCTCTCTGTTTTC 59.775 50.000 0.00 0.00 0.00 2.29
677 681 2.225467 GTGCTGCTTCCTCTCTGTTTT 58.775 47.619 0.00 0.00 0.00 2.43
678 682 1.141657 TGTGCTGCTTCCTCTCTGTTT 59.858 47.619 0.00 0.00 0.00 2.83
679 683 0.761187 TGTGCTGCTTCCTCTCTGTT 59.239 50.000 0.00 0.00 0.00 3.16
680 684 0.034616 GTGTGCTGCTTCCTCTCTGT 59.965 55.000 0.00 0.00 0.00 3.41
681 685 1.013005 CGTGTGCTGCTTCCTCTCTG 61.013 60.000 0.00 0.00 0.00 3.35
682 686 1.291588 CGTGTGCTGCTTCCTCTCT 59.708 57.895 0.00 0.00 0.00 3.10
683 687 1.739562 CCGTGTGCTGCTTCCTCTC 60.740 63.158 0.00 0.00 0.00 3.20
684 688 2.345244 CCGTGTGCTGCTTCCTCT 59.655 61.111 0.00 0.00 0.00 3.69
693 697 3.216292 GTTGTTGGCCCGTGTGCT 61.216 61.111 0.00 0.00 0.00 4.40
695 699 0.804156 GTTTGTTGTTGGCCCGTGTG 60.804 55.000 0.00 0.00 0.00 3.82
746 751 4.831107 AGGAGATTGTTCTCTTCTGCTTC 58.169 43.478 3.26 0.00 46.46 3.86
748 753 4.470334 GAGGAGATTGTTCTCTTCTGCT 57.530 45.455 7.61 0.00 46.40 4.24
770 781 3.056328 GTGCCACGGAAAGGGAGC 61.056 66.667 0.00 0.00 0.00 4.70
947 972 2.529930 TAGGCTGGCTGGCAGGTAGA 62.530 60.000 29.23 0.00 44.55 2.59
950 975 3.406200 CTAGGCTGGCTGGCAGGT 61.406 66.667 29.23 2.25 44.55 4.00
954 981 2.788210 AAAACCCTAGGCTGGCTGGC 62.788 60.000 14.70 10.02 42.15 4.85
957 984 0.329596 CTCAAAACCCTAGGCTGGCT 59.670 55.000 9.28 9.28 0.00 4.75
1446 1486 4.030306 CGCACACGAACTCTAGATGTAAAC 59.970 45.833 0.00 0.00 43.93 2.01
1510 1550 1.586154 AATAACAGCACAGGCACGCC 61.586 55.000 0.00 0.00 44.61 5.68
1583 1625 4.062293 TCTTGTTCACAGATACAAACGGG 58.938 43.478 0.00 0.00 34.17 5.28
1705 1748 2.103094 TGTTCCACACCTTCAGTCTGAG 59.897 50.000 2.12 0.00 0.00 3.35
1741 1784 1.075601 AGAAGGAAGGGTGGATTGCA 58.924 50.000 0.00 0.00 0.00 4.08
1756 1799 7.492524 TCAGAACATACTACTGCCATTAGAAG 58.507 38.462 0.00 0.00 0.00 2.85
1899 1942 6.987404 CCCTTGCTTAGAGATAGAAAAGGTAC 59.013 42.308 0.00 0.00 32.72 3.34
1901 1944 5.726793 TCCCTTGCTTAGAGATAGAAAAGGT 59.273 40.000 0.00 0.00 32.72 3.50
1984 2029 3.506810 GAGTCTCAGAATTCGACCAGTG 58.493 50.000 0.00 0.00 0.00 3.66
2013 2058 1.070134 GGTTTTGAAACAGAAGGGCCC 59.930 52.381 16.46 16.46 40.63 5.80
2120 2169 3.244181 GGGAGGCACAATGTTTTGATTGT 60.244 43.478 0.00 0.00 45.51 2.71
2223 2273 1.133598 CGCAACGGGTCATCTAGTGTA 59.866 52.381 0.00 0.00 0.00 2.90
2224 2274 0.108804 CGCAACGGGTCATCTAGTGT 60.109 55.000 0.00 0.00 0.00 3.55
2225 2275 1.421410 GCGCAACGGGTCATCTAGTG 61.421 60.000 0.30 0.00 0.00 2.74
2226 2276 1.153628 GCGCAACGGGTCATCTAGT 60.154 57.895 0.30 0.00 0.00 2.57
2227 2277 1.883084 GGCGCAACGGGTCATCTAG 60.883 63.158 10.83 0.00 0.00 2.43
2228 2278 2.185867 GGCGCAACGGGTCATCTA 59.814 61.111 10.83 0.00 0.00 1.98
2229 2279 4.778143 GGGCGCAACGGGTCATCT 62.778 66.667 10.83 0.00 0.00 2.90
2231 2281 4.424711 ATGGGCGCAACGGGTCAT 62.425 61.111 10.83 0.00 0.00 3.06
2251 2301 4.362476 GGCTTGCGTTTGGCCTGG 62.362 66.667 3.32 0.00 42.31 4.45
2252 2302 2.934570 ATGGCTTGCGTTTGGCCTG 61.935 57.895 3.32 0.00 45.45 4.85
2253 2303 2.601367 ATGGCTTGCGTTTGGCCT 60.601 55.556 3.32 0.00 45.45 5.19
2254 2304 1.872197 TACATGGCTTGCGTTTGGCC 61.872 55.000 0.00 0.00 45.45 5.36
2255 2305 0.173255 ATACATGGCTTGCGTTTGGC 59.827 50.000 0.00 0.00 43.96 4.52
2256 2306 2.652941 AATACATGGCTTGCGTTTGG 57.347 45.000 0.00 0.00 0.00 3.28
2257 2307 5.861251 TCTTAAAATACATGGCTTGCGTTTG 59.139 36.000 0.00 0.00 0.00 2.93
2258 2308 6.019779 TCTTAAAATACATGGCTTGCGTTT 57.980 33.333 0.00 0.00 0.00 3.60
2259 2309 5.637006 TCTTAAAATACATGGCTTGCGTT 57.363 34.783 0.00 0.00 0.00 4.84
2260 2310 5.637006 TTCTTAAAATACATGGCTTGCGT 57.363 34.783 0.00 0.00 0.00 5.24
2261 2311 6.020440 CACATTCTTAAAATACATGGCTTGCG 60.020 38.462 0.00 0.00 0.00 4.85
2262 2312 6.237915 GCACATTCTTAAAATACATGGCTTGC 60.238 38.462 0.00 0.00 0.00 4.01
2263 2313 6.812656 TGCACATTCTTAAAATACATGGCTTG 59.187 34.615 0.00 0.00 0.00 4.01
2264 2314 6.934056 TGCACATTCTTAAAATACATGGCTT 58.066 32.000 0.00 0.00 0.00 4.35
2265 2315 6.528537 TGCACATTCTTAAAATACATGGCT 57.471 33.333 0.00 0.00 0.00 4.75
2266 2316 7.775397 AATGCACATTCTTAAAATACATGGC 57.225 32.000 0.00 0.00 0.00 4.40
2335 2385 6.932356 ATAAGTTCAGATGTATGCCAACTG 57.068 37.500 0.00 0.00 43.37 3.16
2336 2386 7.944729 AAATAAGTTCAGATGTATGCCAACT 57.055 32.000 0.00 0.00 0.00 3.16
2337 2387 9.722056 CTTAAATAAGTTCAGATGTATGCCAAC 57.278 33.333 0.00 0.00 0.00 3.77
2338 2388 8.405531 GCTTAAATAAGTTCAGATGTATGCCAA 58.594 33.333 2.42 0.00 35.75 4.52
2339 2389 7.555914 TGCTTAAATAAGTTCAGATGTATGCCA 59.444 33.333 2.42 0.00 35.75 4.92
2340 2390 7.930217 TGCTTAAATAAGTTCAGATGTATGCC 58.070 34.615 2.42 0.00 35.75 4.40
2341 2391 9.787532 TTTGCTTAAATAAGTTCAGATGTATGC 57.212 29.630 2.42 0.00 35.75 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.