AutoCloner

Multiple sequence alignment - TraesCS4B01G252700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G252700	chr4B	100.000	3676	0	0	1	3676	518678176	518674501	0.000000e+00	6789.0
1	TraesCS4B01G252700	chr4B	89.301	2860	283	16	831	3676	629035296	629038146	0.000000e+00	3565.0
2	TraesCS4B01G252700	chr4B	89.126	2860	291	15	831	3676	628997834	629000687	0.000000e+00	3541.0
3	TraesCS4B01G252700	chr7B	97.751	2846	63	1	831	3676	636946493	636943649	0.000000e+00	4900.0
4	TraesCS4B01G252700	chr7B	98.020	1768	34	1	1909	3676	641051055	641049289	0.000000e+00	3070.0
5	TraesCS4B01G252700	chr7B	97.332	1087	28	1	831	1917	641060603	641059518	0.000000e+00	1845.0
6	TraesCS4B01G252700	chr7B	97.561	41	1	0	3	43	588875616	588875576	1.830000e-08	71.3
7	TraesCS4B01G252700	chr7B	100.000	37	0	0	1	37	460329685	460329721	6.590000e-08	69.4
8	TraesCS4B01G252700	chr2A	95.645	2847	112	7	831	3676	3401203	3404038	0.000000e+00	4560.0
9	TraesCS4B01G252700	chr2A	95.258	1961	83	5	1716	3676	768722807	768724757	0.000000e+00	3097.0
10	TraesCS4B01G252700	chr5B	95.327	2846	121	5	831	3676	617246429	617243596	0.000000e+00	4508.0
11	TraesCS4B01G252700	chr3B	95.116	2846	126	8	831	3676	819518361	819515529	0.000000e+00	4473.0
12	TraesCS4B01G252700	chr1B	88.663	2858	302	16	834	3676	61171416	61168566	0.000000e+00	3463.0
13	TraesCS4B01G252700	chr4D	87.640	2856	328	21	830	3676	363205455	363208294	0.000000e+00	3295.0
14	TraesCS4B01G252700	chr4D	94.095	796	46	1	35	830	421556065	421555271	0.000000e+00	1208.0
15	TraesCS4B01G252700	chr6A	95.161	1922	83	5	1755	3676	162459117	162461028	0.000000e+00	3025.0
16	TraesCS4B01G252700	chr6A	97.561	41	0	1	2	42	558988370	558988331	6.590000e-08	69.4
17	TraesCS4B01G252700	chr6A	100.000	35	0	0	2	36	6196552	6196586	8.520000e-07	65.8
18	TraesCS4B01G252700	chr4A	93.400	803	42	7	34	830	42262328	42263125	0.000000e+00	1179.0
19	TraesCS4B01G252700	chr2B	95.833	48	0	2	1	48	49902947	49902902	3.940000e-10	76.8
20	TraesCS4B01G252700	chr2B	95.455	44	2	0	2	45	659694595	659694638	1.830000e-08	71.3
21	TraesCS4B01G252700	chr7A	97.561	41	1	0	2	42	198617054	198617094	1.830000e-08	71.3
22	TraesCS4B01G252700	chr2D	97.561	41	1	0	1	41	566129307	566129267	1.830000e-08	71.3
23	TraesCS4B01G252700	chr3A	95.455	44	0	2	2	44	722282142	722282100	6.590000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G252700	chr4B	518674501	518678176	3675	True	6789	6789	100.000	1	3676	1	chr4B.!!$R1	3675
1	TraesCS4B01G252700	chr4B	629035296	629038146	2850	False	3565	3565	89.301	831	3676	1	chr4B.!!$F2	2845
2	TraesCS4B01G252700	chr4B	628997834	629000687	2853	False	3541	3541	89.126	831	3676	1	chr4B.!!$F1	2845
3	TraesCS4B01G252700	chr7B	636943649	636946493	2844	True	4900	4900	97.751	831	3676	1	chr7B.!!$R2	2845
4	TraesCS4B01G252700	chr7B	641049289	641051055	1766	True	3070	3070	98.020	1909	3676	1	chr7B.!!$R3	1767
5	TraesCS4B01G252700	chr7B	641059518	641060603	1085	True	1845	1845	97.332	831	1917	1	chr7B.!!$R4	1086
6	TraesCS4B01G252700	chr2A	3401203	3404038	2835	False	4560	4560	95.645	831	3676	1	chr2A.!!$F1	2845
7	TraesCS4B01G252700	chr2A	768722807	768724757	1950	False	3097	3097	95.258	1716	3676	1	chr2A.!!$F2	1960
8	TraesCS4B01G252700	chr5B	617243596	617246429	2833	True	4508	4508	95.327	831	3676	1	chr5B.!!$R1	2845
9	TraesCS4B01G252700	chr3B	819515529	819518361	2832	True	4473	4473	95.116	831	3676	1	chr3B.!!$R1	2845
10	TraesCS4B01G252700	chr1B	61168566	61171416	2850	True	3463	3463	88.663	834	3676	1	chr1B.!!$R1	2842
11	TraesCS4B01G252700	chr4D	363205455	363208294	2839	False	3295	3295	87.640	830	3676	1	chr4D.!!$F1	2846
12	TraesCS4B01G252700	chr4D	421555271	421556065	794	True	1208	1208	94.095	35	830	1	chr4D.!!$R1	795
13	TraesCS4B01G252700	chr6A	162459117	162461028	1911	False	3025	3025	95.161	1755	3676	1	chr6A.!!$F2	1921
14	TraesCS4B01G252700	chr4A	42262328	42263125	797	False	1179	1179	93.400	34	830	1	chr4A.!!$F1	796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
502	504	0.318762	ACCTCTCTTGAACTGTCGGC	59.681	55.0	0.0	0.0	0.00	5.54	F
1147	1156	0.106268	ATATGCCATTCCGCCACCAA	60.106	50.0	0.0	0.0	0.00	3.67	F
2033	2107	0.035725	TCTGCTCCGTCTCCTTACGA	60.036	55.0	0.0	0.0	45.68	3.43	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1930	1968	0.824759	GGAGTAGATGCCGTTGGAGT	59.175	55.000	0.0	0.0	0.0	3.85	R
2632	2712	1.210478	CCCCGTTGTCAGATCCTTCAT	59.790	52.381	0.0	0.0	0.0	2.57	R
3635	3718	0.104672	TGAACAGAGGGAGGTTGGGA	60.105	55.000	0.0	0.0	0.0	4.37	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	8.263940	TCTAGAAAGACAAATATTTGGGAACG	57.736	34.615	27.43	11.14	42.34	3.95
27	28	6.267496	AGAAAGACAAATATTTGGGAACGG	57.733	37.500	27.43	5.66	42.34	4.44
28	29	6.007703	AGAAAGACAAATATTTGGGAACGGA	58.992	36.000	27.43	0.00	42.34	4.69
29	30	5.897377	AAGACAAATATTTGGGAACGGAG	57.103	39.130	27.43	4.34	42.34	4.63
30	31	4.270008	AGACAAATATTTGGGAACGGAGG	58.730	43.478	27.43	3.68	42.34	4.30
31	32	3.361786	ACAAATATTTGGGAACGGAGGG	58.638	45.455	27.43	3.22	42.34	4.30
32	33	3.010808	ACAAATATTTGGGAACGGAGGGA	59.989	43.478	27.43	0.00	42.34	4.20
64	65	5.411053	GGAGTCTTCATATCTTGCTATTGCC	59.589	44.000	0.00	0.00	38.71	4.52
125	126	8.538856	CAGTAAATCTCGAGTTCATCATCTTTC	58.461	37.037	13.13	0.00	0.00	2.62
132	133	5.118664	TCGAGTTCATCATCTTTCAAACGAC	59.881	40.000	0.00	0.00	0.00	4.34
153	154	9.504710	AACGACGTGATATAGAATAGCAATATC	57.495	33.333	0.00	0.00	34.55	1.63
269	270	7.600752	GCTATAGCTTTCTAATACCTGTCCTTG	59.399	40.741	17.75	0.00	38.21	3.61
316	317	5.435291	GAGATCTTGTCATTCTTGGATGGT	58.565	41.667	0.00	0.00	0.00	3.55
375	376	3.440872	ACGTTGTTGTTTAGCCAGTTTCA	59.559	39.130	0.00	0.00	0.00	2.69
380	381	5.347342	TGTTGTTTAGCCAGTTTCAACATG	58.653	37.500	0.00	0.00	39.65	3.21
502	504	0.318762	ACCTCTCTTGAACTGTCGGC	59.681	55.000	0.00	0.00	0.00	5.54
515	517	3.793559	ACTGTCGGCGCTTATATTCTTT	58.206	40.909	7.64	0.00	0.00	2.52
524	526	5.366752	GCGCTTATATTCTTTGACGCTTAG	58.633	41.667	0.00	0.00	41.70	2.18
542	544	1.945387	AGCCTGCATGAACTGATACG	58.055	50.000	0.00	0.00	0.00	3.06
620	623	2.820330	ACGTTTTGCAGAAATTGGTGG	58.180	42.857	0.00	0.00	0.00	4.61
655	658	3.630312	TGGTTGCTTGGTTACTTTGAGTC	59.370	43.478	0.00	0.00	0.00	3.36
706	709	4.521256	TGTTGTACCATACCAAAGCTTTCC	59.479	41.667	9.23	0.00	0.00	3.13
715	718	2.564721	AAAGCTTTCCGGTGGCTGC	61.565	57.895	5.69	8.83	36.37	5.25
740	747	1.205064	CAGTTTGCACGCCTTCTCG	59.795	57.895	0.00	0.00	0.00	4.04
743	750	1.227409	TTTGCACGCCTTCTCGACA	60.227	52.632	0.00	0.00	0.00	4.35
789	796	2.439156	GCTGCACTCCATCACCCC	60.439	66.667	0.00	0.00	0.00	4.95
799	806	1.186917	CCATCACCCCAAGCTTGCAA	61.187	55.000	21.43	0.00	0.00	4.08
826	833	2.661537	TCGTGTTGTCCAGCTGCG	60.662	61.111	8.66	4.63	0.00	5.18
902	911	3.346969	TCTCTACTATCCTTAGCCCCCT	58.653	50.000	0.00	0.00	0.00	4.79
1122	1131	2.850568	CAACCCTAGTTCCCTTACCCAT	59.149	50.000	0.00	0.00	32.45	4.00
1135	1144	3.436325	CCTTACCCATCACCAATATGCCA	60.436	47.826	0.00	0.00	0.00	4.92
1147	1156	0.106268	ATATGCCATTCCGCCACCAA	60.106	50.000	0.00	0.00	0.00	3.67
1181	1190	3.181497	GCAGATACAATTGCCGATGTTGT	60.181	43.478	5.05	0.00	39.26	3.32
1575	1585	1.244019	ATGAACTCCGGCAACTTGGC	61.244	55.000	5.24	5.24	39.85	4.52
1745	1756	3.288308	CTCGCAAGGCCACTCGTCT	62.288	63.158	5.01	0.00	38.47	4.18
1763	1774	0.317269	CTGCAAGTGTTTCACGCCAG	60.317	55.000	0.00	0.00	39.64	4.85
1917	1955	0.316522	CCTCGGCATCATCATCGTCT	59.683	55.000	0.00	0.00	0.00	4.18
1918	1956	1.541588	CCTCGGCATCATCATCGTCTA	59.458	52.381	0.00	0.00	0.00	2.59
1920	1958	1.953686	TCGGCATCATCATCGTCTACA	59.046	47.619	0.00	0.00	0.00	2.74
1921	1959	2.054363	CGGCATCATCATCGTCTACAC	58.946	52.381	0.00	0.00	0.00	2.90
1924	1962	2.543861	GCATCATCATCGTCTACACCGT	60.544	50.000	0.00	0.00	0.00	4.83
1926	1964	1.674441	TCATCATCGTCTACACCGTCC	59.326	52.381	0.00	0.00	0.00	4.79
1929	1967	1.065636	TCATCGTCTACACCGTCCTCT	60.066	52.381	0.00	0.00	0.00	3.69
1930	1968	2.169144	TCATCGTCTACACCGTCCTCTA	59.831	50.000	0.00	0.00	0.00	2.43
1933	1977	1.932511	CGTCTACACCGTCCTCTACTC	59.067	57.143	0.00	0.00	0.00	2.59
1936	1980	2.306805	TCTACACCGTCCTCTACTCCAA	59.693	50.000	0.00	0.00	0.00	3.53
2033	2107	0.035725	TCTGCTCCGTCTCCTTACGA	60.036	55.000	0.00	0.00	45.68	3.43
2155	2229	0.877071	CACTACTACACCGACCACGT	59.123	55.000	0.00	0.00	37.88	4.49
2238	2312	0.309922	CTCCGTCACCGTACGCATAT	59.690	55.000	10.49	0.00	41.51	1.78
2485	2565	4.373156	ACTATTCCTGTTTCTTGCACCT	57.627	40.909	0.00	0.00	0.00	4.00
3035	3115	6.901615	TTATATTTGGACCTTTCCTCTCCA	57.098	37.500	0.00	0.00	43.31	3.86
3436	3519	2.108700	CTCTTCGCGTTTTTGGTTGTG	58.891	47.619	5.77	0.00	0.00	3.33
3482	3565	8.582657	TCTACAACTTCTCATAAGCTAGAACT	57.417	34.615	0.00	0.00	0.00	3.01
3635	3718	3.873801	GCCACACAAACATCCTCTACCAT	60.874	47.826	0.00	0.00	0.00	3.55
3644	3727	2.176247	TCCTCTACCATCCCAACCTC	57.824	55.000	0.00	0.00	0.00	3.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	8.391106	CGTTCCCAAATATTTGTCTTTCTAGAG	58.609	37.037	23.24	7.00	36.45	2.43
1	2	7.335924	CCGTTCCCAAATATTTGTCTTTCTAGA	59.664	37.037	23.24	7.17	36.45	2.43
2	3	7.335924	TCCGTTCCCAAATATTTGTCTTTCTAG	59.664	37.037	23.24	8.23	36.45	2.43
3	4	7.169591	TCCGTTCCCAAATATTTGTCTTTCTA	58.830	34.615	23.24	5.03	36.45	2.10
4	5	6.007703	TCCGTTCCCAAATATTTGTCTTTCT	58.992	36.000	23.24	0.00	36.45	2.52
5	6	6.262193	TCCGTTCCCAAATATTTGTCTTTC	57.738	37.500	23.24	10.84	36.45	2.62
6	7	5.185056	CCTCCGTTCCCAAATATTTGTCTTT	59.815	40.000	23.24	0.00	36.45	2.52
7	8	4.705023	CCTCCGTTCCCAAATATTTGTCTT	59.295	41.667	23.24	0.00	36.45	3.01
8	9	4.270008	CCTCCGTTCCCAAATATTTGTCT	58.730	43.478	23.24	0.00	36.45	3.41
9	10	3.380320	CCCTCCGTTCCCAAATATTTGTC	59.620	47.826	23.24	11.68	36.45	3.18
10	11	3.010808	TCCCTCCGTTCCCAAATATTTGT	59.989	43.478	23.24	0.00	36.45	2.83
11	12	3.626930	TCCCTCCGTTCCCAAATATTTG	58.373	45.455	19.40	19.40	37.90	2.32
12	13	3.268595	ACTCCCTCCGTTCCCAAATATTT	59.731	43.478	0.00	0.00	0.00	1.40
13	14	2.850568	ACTCCCTCCGTTCCCAAATATT	59.149	45.455	0.00	0.00	0.00	1.28
14	15	2.488836	ACTCCCTCCGTTCCCAAATAT	58.511	47.619	0.00	0.00	0.00	1.28
15	16	1.961133	ACTCCCTCCGTTCCCAAATA	58.039	50.000	0.00	0.00	0.00	1.40
16	17	1.838077	CTACTCCCTCCGTTCCCAAAT	59.162	52.381	0.00	0.00	0.00	2.32
17	18	1.272807	CTACTCCCTCCGTTCCCAAA	58.727	55.000	0.00	0.00	0.00	3.28
18	19	1.262640	GCTACTCCCTCCGTTCCCAA	61.263	60.000	0.00	0.00	0.00	4.12
19	20	1.684734	GCTACTCCCTCCGTTCCCA	60.685	63.158	0.00	0.00	0.00	4.37
20	21	1.262640	TTGCTACTCCCTCCGTTCCC	61.263	60.000	0.00	0.00	0.00	3.97
21	22	0.175989	CTTGCTACTCCCTCCGTTCC	59.824	60.000	0.00	0.00	0.00	3.62
22	23	0.175989	CCTTGCTACTCCCTCCGTTC	59.824	60.000	0.00	0.00	0.00	3.95
23	24	0.252103	TCCTTGCTACTCCCTCCGTT	60.252	55.000	0.00	0.00	0.00	4.44
24	25	0.684805	CTCCTTGCTACTCCCTCCGT	60.685	60.000	0.00	0.00	0.00	4.69
25	26	0.684805	ACTCCTTGCTACTCCCTCCG	60.685	60.000	0.00	0.00	0.00	4.63
26	27	1.116308	GACTCCTTGCTACTCCCTCC	58.884	60.000	0.00	0.00	0.00	4.30
27	28	2.153034	AGACTCCTTGCTACTCCCTC	57.847	55.000	0.00	0.00	0.00	4.30
28	29	2.225394	TGAAGACTCCTTGCTACTCCCT	60.225	50.000	0.00	0.00	31.62	4.20
29	30	2.180276	TGAAGACTCCTTGCTACTCCC	58.820	52.381	0.00	0.00	31.62	4.30
30	31	5.538433	AGATATGAAGACTCCTTGCTACTCC	59.462	44.000	0.00	0.00	31.62	3.85
31	32	6.648879	AGATATGAAGACTCCTTGCTACTC	57.351	41.667	0.00	0.00	31.62	2.59
32	33	6.815089	CAAGATATGAAGACTCCTTGCTACT	58.185	40.000	0.00	0.00	31.62	2.57
64	65	5.091261	AGAATAGTACTTGGCCTTCACTG	57.909	43.478	3.32	0.00	0.00	3.66
80	81	8.553459	TTTACTGAAAGCAGAAAGGAGAATAG	57.447	34.615	0.00	0.00	45.17	1.73
125	126	6.986424	TGCTATTCTATATCACGTCGTTTG	57.014	37.500	0.00	0.00	0.00	2.93
269	270	5.163416	CCATTATTTTGGTCCAACTGATCCC	60.163	44.000	2.98	0.00	31.74	3.85
316	317	3.069586	ACTGGTTGAGAACAAGACGATCA	59.930	43.478	0.00	0.00	35.91	2.92
399	400	7.020914	GACATTATGTCTCCATCTTGAAACC	57.979	40.000	17.19	0.00	43.73	3.27
502	504	5.366752	GCTAAGCGTCAAAGAATATAAGCG	58.633	41.667	0.00	0.00	0.00	4.68
515	517	0.036483	TTCATGCAGGCTAAGCGTCA	60.036	50.000	0.00	0.00	33.85	4.35
524	526	1.939974	TCGTATCAGTTCATGCAGGC	58.060	50.000	0.00	0.00	0.00	4.85
565	568	5.510520	GGATGGATCCAGAGAATACACAGTC	60.511	48.000	21.33	7.56	46.38	3.51
655	658	5.646793	ACCACTTCTGTGAATGAATGATCAG	59.353	40.000	0.09	0.00	46.55	2.90
740	747	0.179205	GCTCGTGCTGCATTTCTGTC	60.179	55.000	5.27	0.00	36.03	3.51
743	750	0.604780	AGTGCTCGTGCTGCATTTCT	60.605	50.000	5.27	0.00	42.69	2.52
799	806	1.333619	GGACAACACGACTGCACAAAT	59.666	47.619	0.00	0.00	0.00	2.32
806	813	1.835483	GCAGCTGGACAACACGACTG	61.835	60.000	17.12	0.00	0.00	3.51
826	833	9.843334	CAAACCGAAGATATACTCTAATACTCC	57.157	37.037	0.00	0.00	32.41	3.85
895	904	5.791303	ATAAGTTACAAAACTAGGGGGCT	57.209	39.130	0.00	0.00	45.37	5.19
994	1003	2.735772	GCGGAGAGGCCATGAGGAA	61.736	63.158	5.01	0.00	36.89	3.36
1122	1131	1.317613	GCGGAATGGCATATTGGTGA	58.682	50.000	0.00	0.00	0.00	4.02
1135	1144	1.004745	AGAGATTGTTGGTGGCGGAAT	59.995	47.619	0.00	0.00	0.00	3.01
1147	1156	6.705381	GCAATTGTATCTGCTAGAGAGATTGT	59.295	38.462	7.40	0.00	35.62	2.71
1181	1190	0.104120	CGAGATGGGTATGAACGGCA	59.896	55.000	0.00	0.00	0.00	5.69
1745	1756	1.726865	CTGGCGTGAAACACTTGCA	59.273	52.632	0.00	0.00	35.74	4.08
1917	1955	2.440409	GTTGGAGTAGAGGACGGTGTA	58.560	52.381	0.00	0.00	0.00	2.90
1918	1956	1.254954	GTTGGAGTAGAGGACGGTGT	58.745	55.000	0.00	0.00	0.00	4.16
1920	1958	0.964358	CCGTTGGAGTAGAGGACGGT	60.964	60.000	5.16	0.00	45.94	4.83
1921	1959	1.807886	CCGTTGGAGTAGAGGACGG	59.192	63.158	0.00	0.00	45.86	4.79
1924	1962	1.112113	GATGCCGTTGGAGTAGAGGA	58.888	55.000	0.00	0.00	0.00	3.71
1926	1964	2.952978	AGTAGATGCCGTTGGAGTAGAG	59.047	50.000	0.00	0.00	0.00	2.43
1929	1967	2.029623	GGAGTAGATGCCGTTGGAGTA	58.970	52.381	0.00	0.00	0.00	2.59
1930	1968	0.824759	GGAGTAGATGCCGTTGGAGT	59.175	55.000	0.00	0.00	0.00	3.85
1933	1977	1.369625	GTTGGAGTAGATGCCGTTGG	58.630	55.000	0.00	0.00	0.00	3.77
1936	1980	1.515954	CCGTTGGAGTAGATGCCGT	59.484	57.895	0.00	0.00	0.00	5.68
2238	2312	2.284039	ATTGGTGCATGCTGCCCA	60.284	55.556	20.33	18.32	44.23	5.36
2485	2565	7.420214	GGAAGAATAGGGGATGTAAGAATCACA	60.420	40.741	0.00	0.00	31.07	3.58
2632	2712	1.210478	CCCCGTTGTCAGATCCTTCAT	59.790	52.381	0.00	0.00	0.00	2.57
3035	3115	1.338769	GGTGTACATCGGACTTGGCTT	60.339	52.381	0.00	0.00	0.00	4.35
3436	3519	4.580580	AGAAGTGATGTTGGGAAAACAGAC	59.419	41.667	0.00	0.00	33.18	3.51
3482	3565	2.489938	AATGCAGGGTAAAGAGCGAA	57.510	45.000	0.00	0.00	0.00	4.70
3635	3718	0.104672	TGAACAGAGGGAGGTTGGGA	60.105	55.000	0.00	0.00	0.00	4.37
3644	3727	4.163839	AGGAGATGAAGAATGAACAGAGGG	59.836	45.833	0.00	0.00	0.00	4.30

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.