Multiple sequence alignment - TraesCS4B01G252600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G252600 chr4B 100.000 3237 0 0 493 3729 518644416 518641180 0.000000e+00 5978
1 TraesCS4B01G252600 chr4B 91.392 546 46 1 517 1062 478184936 478184392 0.000000e+00 747
2 TraesCS4B01G252600 chr4B 100.000 217 0 0 1 217 518644908 518644692 5.800000e-108 401
3 TraesCS4B01G252600 chr4B 94.286 70 4 0 1350 1419 478184316 478184247 1.420000e-19 108
4 TraesCS4B01G252600 chr4D 94.513 2351 84 20 1419 3729 421532478 421530133 0.000000e+00 3585
5 TraesCS4B01G252600 chr4D 93.031 574 36 2 493 1062 421533466 421532893 0.000000e+00 835
6 TraesCS4B01G252600 chr4D 90.808 359 11 5 1062 1419 421532854 421532517 9.440000e-126 460
7 TraesCS4B01G252600 chr4D 87.310 197 6 4 4 200 421534042 421533865 1.360000e-49 207
8 TraesCS4B01G252600 chr4A 94.453 1965 82 13 1419 3358 42273518 42275480 0.000000e+00 3000
9 TraesCS4B01G252600 chr4A 92.255 581 34 5 493 1062 42272493 42273073 0.000000e+00 813
10 TraesCS4B01G252600 chr4A 92.523 321 20 2 3410 3729 42275483 42275800 1.220000e-124 457
11 TraesCS4B01G252600 chr4A 90.110 364 14 2 1057 1419 42273106 42273448 1.580000e-123 453
12 TraesCS4B01G252600 chr4A 94.954 218 8 3 1 217 42272247 42272462 4.610000e-89 339
13 TraesCS4B01G252600 chr2A 90.351 570 50 3 493 1062 72566605 72566041 0.000000e+00 743
14 TraesCS4B01G252600 chr2A 94.286 70 4 0 1350 1419 72521229 72521160 1.420000e-19 108
15 TraesCS4B01G252600 chr2B 90.175 570 55 1 493 1062 31122690 31123258 0.000000e+00 741
16 TraesCS4B01G252600 chr2B 95.714 70 3 0 1350 1419 31123334 31123403 3.040000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G252600 chr4B 518641180 518644908 3728 True 3189.50 5978 100.0000 1 3729 2 chr4B.!!$R2 3728
1 TraesCS4B01G252600 chr4B 478184247 478184936 689 True 427.50 747 92.8390 517 1419 2 chr4B.!!$R1 902
2 TraesCS4B01G252600 chr4D 421530133 421534042 3909 True 1271.75 3585 91.4155 4 3729 4 chr4D.!!$R1 3725
3 TraesCS4B01G252600 chr4A 42272247 42275800 3553 False 1012.40 3000 92.8590 1 3729 5 chr4A.!!$F1 3728
4 TraesCS4B01G252600 chr2A 72566041 72566605 564 True 743.00 743 90.3510 493 1062 1 chr2A.!!$R2 569
5 TraesCS4B01G252600 chr2B 31122690 31123403 713 False 427.00 741 92.9445 493 1419 2 chr2B.!!$F1 926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 635 0.035458 CCCTCGATTAGGTGCCATCC 59.965 60.000 0.00 0.0 44.9 3.51 F
740 857 0.526096 CATCCTCCGGCGCAAAATTG 60.526 55.000 10.83 0.0 0.0 2.32 F
796 913 0.904649 TCATCGGGTTGCTGATCTGT 59.095 50.000 1.27 0.0 0.0 3.41 F
805 922 1.857965 TGCTGATCTGTACTGAGGCT 58.142 50.000 18.30 0.0 0.0 4.58 F
1687 1917 2.096980 ACATGCGAATGATCAGCTGTTG 59.903 45.455 11.32 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 1899 1.089112 CCAACAGCTGATCATTCGCA 58.911 50.000 23.35 0.0 0.00 5.10 R
1687 1917 1.541588 CTGCCCACAGCTAAAAAGTCC 59.458 52.381 0.00 0.0 44.23 3.85 R
2118 2349 2.961062 AGGCTTTGTGAAGAACTGCATT 59.039 40.909 0.00 0.0 34.71 3.56 R
2670 2904 3.369546 ACTGCAAAACAAGGGAAATCG 57.630 42.857 0.00 0.0 0.00 3.34 R
3246 3515 0.179073 ATCATACGAGCACAGTGCCC 60.179 55.000 22.41 9.8 46.52 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.698797 GGTATCTCCATTCCCGAACAGA 59.301 50.000 0.00 0.00 35.97 3.41
526 635 0.035458 CCCTCGATTAGGTGCCATCC 59.965 60.000 0.00 0.00 44.90 3.51
620 730 0.527600 GGATTTGCCCGGCGAAATTC 60.528 55.000 16.30 9.95 35.42 2.17
710 827 4.081309 TCACATACTACCCCTTACAAGTGC 60.081 45.833 0.00 0.00 0.00 4.40
740 857 0.526096 CATCCTCCGGCGCAAAATTG 60.526 55.000 10.83 0.00 0.00 2.32
796 913 0.904649 TCATCGGGTTGCTGATCTGT 59.095 50.000 1.27 0.00 0.00 3.41
803 920 2.419297 GGGTTGCTGATCTGTACTGAGG 60.419 54.545 8.50 2.98 0.00 3.86
805 922 1.857965 TGCTGATCTGTACTGAGGCT 58.142 50.000 18.30 0.00 0.00 4.58
919 1039 2.103432 TCTTGCTGACGGTCCTGTTTAA 59.897 45.455 5.55 0.00 0.00 1.52
1108 1267 7.878644 ACTGGTCTAGGTTTTCTTATCTGTTTC 59.121 37.037 0.00 0.00 0.00 2.78
1119 1278 9.436957 TTTTCTTATCTGTTTCTACTCCATGTC 57.563 33.333 0.00 0.00 0.00 3.06
1130 1289 9.262358 GTTTCTACTCCATGTCTTACCATATTC 57.738 37.037 0.00 0.00 0.00 1.75
1200 1360 5.823045 CGGGCATTCTATTTCTTCTAAAGGT 59.177 40.000 0.00 0.00 0.00 3.50
1254 1414 6.808212 AGTTATGTTGCTTTTCCGATGATTTG 59.192 34.615 0.00 0.00 0.00 2.32
1258 1418 6.918626 TGTTGCTTTTCCGATGATTTGATTA 58.081 32.000 0.00 0.00 0.00 1.75
1259 1419 7.546358 TGTTGCTTTTCCGATGATTTGATTAT 58.454 30.769 0.00 0.00 0.00 1.28
1469 1699 6.294065 GGACCAGTATATGAAACTCTAGGACG 60.294 46.154 0.00 0.00 0.00 4.79
1475 1705 8.291032 AGTATATGAAACTCTAGGACGAAATCG 58.709 37.037 0.48 0.48 46.33 3.34
1619 1849 2.827642 GCCAGCTCCATGGTCTGC 60.828 66.667 22.78 19.38 42.75 4.26
1669 1899 3.002791 CCATCGTGCTTGTTCAGTACAT 58.997 45.455 0.00 0.00 37.98 2.29
1687 1917 2.096980 ACATGCGAATGATCAGCTGTTG 59.903 45.455 11.32 0.00 0.00 3.33
1830 2061 6.934645 TGTTATGTACTTTGCAGCTTAGACTT 59.065 34.615 0.00 0.00 0.00 3.01
1849 2080 6.352516 AGACTTCAATGTGTTCTTCTCACTT 58.647 36.000 0.00 0.00 36.83 3.16
2005 2236 8.718158 AATTTCCTTTTCTCAATCTTCTCCTT 57.282 30.769 0.00 0.00 0.00 3.36
2012 2243 5.413309 TCTCAATCTTCTCCTTGACCTTC 57.587 43.478 0.00 0.00 0.00 3.46
2103 2334 3.383185 TGTCAGGTTTGGGTTTGACAATC 59.617 43.478 3.89 0.00 44.81 2.67
2162 2393 3.482436 AGAATTACAAGGTTCGGCAACA 58.518 40.909 0.00 0.00 33.70 3.33
2168 2399 3.219281 ACAAGGTTCGGCAACAACTAAT 58.781 40.909 0.00 0.00 33.70 1.73
2371 2604 4.690280 CGCTTGATTAAAACCTGCCATTTT 59.310 37.500 0.00 0.00 33.85 1.82
2390 2623 6.765512 CCATTTTATGTTTGGACAAAACCTGT 59.234 34.615 2.94 0.00 46.47 4.00
2655 2889 3.118000 TGAGAGTTACGAGGCCTGATCTA 60.118 47.826 12.00 0.00 0.00 1.98
2670 2904 5.337169 GCCTGATCTATATTCTGACCAGTCC 60.337 48.000 0.00 0.00 0.00 3.85
2752 2986 4.678509 TCATTTCGCGCTATGTTTCTTT 57.321 36.364 5.56 0.00 0.00 2.52
2804 3039 2.706723 TGGGGACAACAGCAAGTAGTTA 59.293 45.455 0.00 0.00 37.44 2.24
2844 3079 4.698780 CCCTTTACCTGTTTACTTACTGGC 59.301 45.833 0.00 0.00 39.87 4.85
2997 3236 5.967088 TGTTGAAGTAGAAGCTACATCCTC 58.033 41.667 7.29 2.39 0.00 3.71
3000 3239 5.761205 TGAAGTAGAAGCTACATCCTCTCT 58.239 41.667 7.29 0.00 0.00 3.10
3163 3418 6.104146 ACAAACTTTGTAACTTTGTGGGTT 57.896 33.333 5.30 0.00 43.27 4.11
3171 3426 5.751586 TGTAACTTTGTGGGTTTCTCTCTT 58.248 37.500 0.00 0.00 0.00 2.85
3173 3428 6.661805 TGTAACTTTGTGGGTTTCTCTCTTTT 59.338 34.615 0.00 0.00 0.00 2.27
3226 3487 5.769662 ACATGAGTTTAGGAATTTGTGCTCA 59.230 36.000 0.00 0.00 36.39 4.26
3227 3488 5.689383 TGAGTTTAGGAATTTGTGCTCAC 57.311 39.130 0.00 0.00 0.00 3.51
3246 3515 1.891150 ACTCTTTGCTTGCTGGAATGG 59.109 47.619 0.00 0.00 0.00 3.16
3334 3603 7.547227 TGGTAGATCACATCATATAATCACCG 58.453 38.462 0.00 0.00 0.00 4.94
3362 3639 3.181465 CGATTGGCAGGTAAGGTATCTGT 60.181 47.826 0.00 0.00 39.14 3.41
3369 3646 5.053145 GCAGGTAAGGTATCTGTCAATCTG 58.947 45.833 0.00 0.00 39.14 2.90
3373 3650 2.111384 AGGTATCTGTCAATCTGCCGT 58.889 47.619 0.00 0.00 0.00 5.68
3377 3654 1.262417 TCTGTCAATCTGCCGTACCA 58.738 50.000 0.00 0.00 0.00 3.25
3394 3671 3.083122 ACCACTGATAGTCTGGTACGT 57.917 47.619 0.00 0.00 0.00 3.57
3408 3685 4.022935 TCTGGTACGTAACGAACACAAGAT 60.023 41.667 6.07 0.00 0.00 2.40
3411 3688 4.860907 GGTACGTAACGAACACAAGATGAT 59.139 41.667 0.00 0.00 0.00 2.45
3638 3919 1.073964 CCATATGCAGCGATTCTCCG 58.926 55.000 0.00 0.00 0.00 4.63
3673 3954 2.749621 CGCAGCTTCTTCCTACCATTTT 59.250 45.455 0.00 0.00 0.00 1.82
3703 3984 5.866633 GTCAGATGAGCACATATAACTAGCC 59.133 44.000 0.00 0.00 36.82 3.93
3707 3988 6.440010 AGATGAGCACATATAACTAGCCTGAT 59.560 38.462 0.00 0.00 36.82 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.943925 CGAATGTGATTTTATTACCGAATTGTC 58.056 33.333 0.00 0.00 0.00 3.18
66 67 5.461032 TGTGTGTGTGTTCCTTTCTTTTT 57.539 34.783 0.00 0.00 0.00 1.94
545 654 0.594028 GCGTGCCGAATCGTAGATCA 60.594 55.000 0.82 0.00 45.12 2.92
620 730 1.226156 CGAGCCGACGAACTCTCAG 60.226 63.158 13.61 0.00 35.09 3.35
710 827 1.590932 CGGAGGATGGCATCAGAAAG 58.409 55.000 27.39 11.44 0.00 2.62
740 857 2.577785 GATACACGGAAGAGCGCGC 61.578 63.158 26.66 26.66 0.00 6.86
796 913 2.420138 GCATCTCGGAGCCTCAGTA 58.580 57.895 0.00 0.00 0.00 2.74
803 920 1.953138 CGACATGGCATCTCGGAGC 60.953 63.158 16.12 0.00 0.00 4.70
805 922 1.037579 AGACGACATGGCATCTCGGA 61.038 55.000 25.19 0.00 0.00 4.55
1079 1238 7.235812 ACAGATAAGAAAACCTAGACCAGTTCT 59.764 37.037 0.00 0.00 38.51 3.01
1108 1267 7.015682 ACTGGAATATGGTAAGACATGGAGTAG 59.984 40.741 0.00 0.00 32.39 2.57
1119 1278 5.473504 GGTGGCATAACTGGAATATGGTAAG 59.526 44.000 0.00 0.00 32.54 2.34
1130 1289 4.644234 TGTATCATTTGGTGGCATAACTGG 59.356 41.667 0.00 0.00 0.00 4.00
1200 1360 3.871006 CACAAGCATGACGGATAAGCTAA 59.129 43.478 0.00 0.00 34.66 3.09
1209 1369 0.796312 GTGTACCACAAGCATGACGG 59.204 55.000 0.00 0.00 34.08 4.79
1258 1418 8.883731 CGACACTTCCAGTCTGATAATAAAAAT 58.116 33.333 0.00 0.00 33.89 1.82
1259 1419 8.092068 TCGACACTTCCAGTCTGATAATAAAAA 58.908 33.333 0.00 0.00 33.89 1.94
1324 1484 8.506196 ACTAAGGATAAGCATTGGGATACTAA 57.494 34.615 0.00 0.00 43.23 2.24
1325 1485 9.784376 ATACTAAGGATAAGCATTGGGATACTA 57.216 33.333 0.00 0.00 0.00 1.82
1326 1486 8.686739 ATACTAAGGATAAGCATTGGGATACT 57.313 34.615 0.00 0.00 0.00 2.12
1327 1487 7.988028 GGATACTAAGGATAAGCATTGGGATAC 59.012 40.741 0.00 0.00 0.00 2.24
1328 1488 7.127339 GGGATACTAAGGATAAGCATTGGGATA 59.873 40.741 0.00 0.00 0.00 2.59
1329 1489 6.069381 GGGATACTAAGGATAAGCATTGGGAT 60.069 42.308 0.00 0.00 0.00 3.85
1330 1490 5.250774 GGGATACTAAGGATAAGCATTGGGA 59.749 44.000 0.00 0.00 0.00 4.37
1331 1491 5.014123 TGGGATACTAAGGATAAGCATTGGG 59.986 44.000 0.00 0.00 0.00 4.12
1332 1492 6.126863 TGGGATACTAAGGATAAGCATTGG 57.873 41.667 0.00 0.00 0.00 3.16
1333 1493 7.065085 CGATTGGGATACTAAGGATAAGCATTG 59.935 40.741 0.00 0.00 41.90 2.82
1334 1494 7.038302 TCGATTGGGATACTAAGGATAAGCATT 60.038 37.037 0.00 0.00 41.90 3.56
1335 1495 6.440647 TCGATTGGGATACTAAGGATAAGCAT 59.559 38.462 0.00 0.00 41.90 3.79
1336 1496 5.778241 TCGATTGGGATACTAAGGATAAGCA 59.222 40.000 0.00 0.00 41.90 3.91
1337 1497 6.071278 AGTCGATTGGGATACTAAGGATAAGC 60.071 42.308 0.00 0.00 41.90 3.09
1338 1498 7.469537 AGTCGATTGGGATACTAAGGATAAG 57.530 40.000 0.00 0.00 41.90 1.73
1339 1499 8.967918 CATAGTCGATTGGGATACTAAGGATAA 58.032 37.037 0.00 0.00 41.90 1.75
1340 1500 8.333984 TCATAGTCGATTGGGATACTAAGGATA 58.666 37.037 0.00 0.00 41.90 2.59
1341 1501 7.182760 TCATAGTCGATTGGGATACTAAGGAT 58.817 38.462 0.00 0.00 41.90 3.24
1342 1502 6.549242 TCATAGTCGATTGGGATACTAAGGA 58.451 40.000 0.00 0.00 41.90 3.36
1343 1503 6.835819 TCATAGTCGATTGGGATACTAAGG 57.164 41.667 0.00 0.00 41.90 2.69
1344 1504 8.957466 TGTATCATAGTCGATTGGGATACTAAG 58.043 37.037 22.33 4.75 41.90 2.18
1521 1751 7.112779 CCCCAAGACAAAATCTACACTAATCT 58.887 38.462 0.00 0.00 36.27 2.40
1539 1769 3.533146 TCCAAGTACCATTACCCCAAGA 58.467 45.455 0.00 0.00 0.00 3.02
1619 1849 2.503356 AGTAGCCAATTGGAGACTGGAG 59.497 50.000 29.02 0.00 37.39 3.86
1669 1899 1.089112 CCAACAGCTGATCATTCGCA 58.911 50.000 23.35 0.00 0.00 5.10
1687 1917 1.541588 CTGCCCACAGCTAAAAAGTCC 59.458 52.381 0.00 0.00 44.23 3.85
1783 2014 8.685838 AACACATTGTACCTAACATTACTTGT 57.314 30.769 0.00 0.00 41.53 3.16
1802 2033 5.964958 AAGCTGCAAAGTACATAACACAT 57.035 34.783 1.02 0.00 0.00 3.21
1830 2061 6.290605 TCATCAAGTGAGAAGAACACATTGA 58.709 36.000 0.00 0.00 40.25 2.57
2005 2236 7.855375 AGTCAATTCATCTATTGAGAAGGTCA 58.145 34.615 0.00 0.00 43.22 4.02
2012 2243 9.702494 TGCATACTAGTCAATTCATCTATTGAG 57.298 33.333 0.00 0.00 43.22 3.02
2103 2334 3.058016 ACTGCATTGTTGATTTCAGACCG 60.058 43.478 0.00 0.00 0.00 4.79
2118 2349 2.961062 AGGCTTTGTGAAGAACTGCATT 59.039 40.909 0.00 0.00 34.71 3.56
2162 2393 7.616313 TGGAGAACAACCAAAACAAATTAGTT 58.384 30.769 0.00 0.00 34.25 2.24
2168 2399 5.667539 TGATGGAGAACAACCAAAACAAA 57.332 34.783 0.00 0.00 40.93 2.83
2338 2569 5.115021 GGTTTTAATCAAGCGAGAAACAACG 59.885 40.000 0.00 0.00 30.20 4.10
2339 2570 6.142320 CAGGTTTTAATCAAGCGAGAAACAAC 59.858 38.462 0.00 0.00 30.20 3.32
2371 2604 7.045126 CCTTTACAGGTTTTGTCCAAACATA 57.955 36.000 2.31 0.00 46.01 2.29
2390 2623 8.696043 ATCAGCATAGCATTGAATAACCTTTA 57.304 30.769 0.00 0.00 0.00 1.85
2400 2633 7.899973 TGAAGATACTATCAGCATAGCATTGA 58.100 34.615 0.00 0.00 36.18 2.57
2423 2657 4.130857 TCTAGTGAACGCATTGGTTTTGA 58.869 39.130 0.00 0.00 0.00 2.69
2477 2711 6.757237 TGCAAATCAGTGTCCATTAAACATT 58.243 32.000 0.00 0.00 0.00 2.71
2655 2889 4.202367 GGGAAATCGGACTGGTCAGAATAT 60.202 45.833 7.55 0.00 37.35 1.28
2670 2904 3.369546 ACTGCAAAACAAGGGAAATCG 57.630 42.857 0.00 0.00 0.00 3.34
2752 2986 5.772825 AAAAACTTCAGCTGCTACATCAA 57.227 34.783 9.47 0.00 0.00 2.57
2789 3024 4.201950 GGATGGCATAACTACTTGCTGTTG 60.202 45.833 0.00 0.00 38.88 3.33
2844 3079 5.106830 GGGTGTAATTTACAAAGGACAGTCG 60.107 44.000 10.73 0.00 40.93 4.18
2918 3153 3.190535 GGGCGCTTATGAAGTTTCTTCAA 59.809 43.478 7.64 1.13 31.55 2.69
2997 3236 8.818141 TGAACATAAGTACAAAAGAGACAGAG 57.182 34.615 0.00 0.00 0.00 3.35
3150 3389 7.712204 AAAAAGAGAGAAACCCACAAAGTTA 57.288 32.000 0.00 0.00 0.00 2.24
3173 3428 4.143009 GCGCCAAACACAAAAAGAGAAAAA 60.143 37.500 0.00 0.00 0.00 1.94
3175 3430 2.926838 GCGCCAAACACAAAAAGAGAAA 59.073 40.909 0.00 0.00 0.00 2.52
3177 3432 1.748493 AGCGCCAAACACAAAAAGAGA 59.252 42.857 2.29 0.00 0.00 3.10
3226 3487 1.891150 CCATTCCAGCAAGCAAAGAGT 59.109 47.619 0.00 0.00 0.00 3.24
3227 3488 1.203994 CCCATTCCAGCAAGCAAAGAG 59.796 52.381 0.00 0.00 0.00 2.85
3246 3515 0.179073 ATCATACGAGCACAGTGCCC 60.179 55.000 22.41 9.80 46.52 5.36
3334 3603 0.963355 TTACCTGCCAATCGGTTGCC 60.963 55.000 1.86 0.00 34.76 4.52
3362 3639 1.262417 TCAGTGGTACGGCAGATTGA 58.738 50.000 0.00 0.00 0.00 2.57
3369 3646 1.067212 CCAGACTATCAGTGGTACGGC 59.933 57.143 0.00 0.00 0.00 5.68
3373 3650 4.226427 ACGTACCAGACTATCAGTGGTA 57.774 45.455 0.00 0.00 42.99 3.25
3377 3654 4.507710 TCGTTACGTACCAGACTATCAGT 58.492 43.478 4.24 0.00 0.00 3.41
3394 3671 3.612423 CGCTCATCATCTTGTGTTCGTTA 59.388 43.478 0.00 0.00 0.00 3.18
3408 3685 7.112779 TGATCTATCTCTATTACCGCTCATCA 58.887 38.462 0.00 0.00 0.00 3.07
3411 3688 7.112779 TGATGATCTATCTCTATTACCGCTCA 58.887 38.462 0.00 0.00 36.71 4.26
3455 3732 4.388773 CGACAGATTGCAGTTGTTAAGCTA 59.611 41.667 0.00 0.00 0.00 3.32
3461 3738 3.376859 TGTTTCGACAGATTGCAGTTGTT 59.623 39.130 0.00 0.00 0.00 2.83
3462 3739 2.942376 TGTTTCGACAGATTGCAGTTGT 59.058 40.909 0.17 0.17 0.00 3.32
3463 3740 3.242706 TGTGTTTCGACAGATTGCAGTTG 60.243 43.478 0.00 0.00 0.00 3.16
3558 3838 4.801521 AGGGTTAGGTTTTGTTAGTGGT 57.198 40.909 0.00 0.00 0.00 4.16
3559 3839 6.117975 TCTAGGGTTAGGTTTTGTTAGTGG 57.882 41.667 0.00 0.00 0.00 4.00
3638 3919 1.964373 CTGCGTGGTGTTGGTACCC 60.964 63.158 10.07 0.00 40.09 3.69
3673 3954 2.636647 TGTGCTCATCTGACCAACAA 57.363 45.000 0.00 0.00 0.00 2.83
3703 3984 5.335191 GGGTTTCTTAACAACAGCAGATCAG 60.335 44.000 0.00 0.00 35.92 2.90
3707 3988 4.164843 AGGGTTTCTTAACAACAGCAGA 57.835 40.909 0.00 0.00 35.92 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.