Multiple sequence alignment - TraesCS4B01G252500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G252500 chr4B 100.000 5989 0 0 1 5989 518636461 518642449 0.000000e+00 11060
1 TraesCS4B01G252500 chr4B 95.402 174 7 1 1842 2015 106637166 106636994 5.910000e-70 276
2 TraesCS4B01G252500 chr4A 91.381 4606 211 62 556 5039 42280024 42275483 0.000000e+00 6135
3 TraesCS4B01G252500 chr4A 93.261 920 39 10 5091 5989 42275480 42274563 0.000000e+00 1334
4 TraesCS4B01G252500 chr4D 92.485 2821 141 30 3218 5989 421528636 421531434 0.000000e+00 3969
5 TraesCS4B01G252500 chr4D 89.170 2493 114 65 652 3034 421525554 421528000 0.000000e+00 2964
6 TraesCS4B01G252500 chr4D 84.836 244 34 3 4 246 69136142 69135901 6.000000e-60 243
7 TraesCS4B01G252500 chr6B 91.632 729 40 5 1842 2570 272817889 272817182 0.000000e+00 989
8 TraesCS4B01G252500 chr6B 95.278 360 16 1 1842 2201 553748928 553749286 2.420000e-158 569
9 TraesCS4B01G252500 chr6B 92.164 268 16 5 255 518 694428353 694428087 2.040000e-99 374
10 TraesCS4B01G252500 chr6B 85.141 249 30 3 4 246 213641299 213641052 1.290000e-61 248
11 TraesCS4B01G252500 chr5B 94.722 360 18 1 1842 2201 711381487 711381845 5.240000e-155 558
12 TraesCS4B01G252500 chr3B 94.444 360 17 3 1842 2201 350050621 350050977 8.770000e-153 551
13 TraesCS4B01G252500 chr3B 92.509 267 17 3 255 518 114332728 114332462 4.380000e-101 379
14 TraesCS4B01G252500 chr3B 95.977 174 6 1 1842 2015 729710217 729710045 1.270000e-71 281
15 TraesCS4B01G252500 chr3B 94.798 173 8 1 1843 2015 30995187 30995358 9.890000e-68 268
16 TraesCS4B01G252500 chr1A 93.889 360 21 1 1842 2201 26547631 26547273 5.280000e-150 542
17 TraesCS4B01G252500 chr1A 85.772 246 31 4 1 246 390694252 390694493 2.140000e-64 257
18 TraesCS4B01G252500 chr1B 92.473 279 15 6 253 526 211478851 211479128 1.560000e-105 394
19 TraesCS4B01G252500 chr7A 93.893 262 13 3 261 519 44210820 44210559 5.630000e-105 392
20 TraesCS4B01G252500 chr2B 92.029 276 16 6 250 521 357919548 357919821 3.390000e-102 383
21 TraesCS4B01G252500 chr3D 93.130 262 13 5 261 518 447585144 447584884 4.380000e-101 379
22 TraesCS4B01G252500 chr3D 92.193 269 18 3 253 518 226986495 226986763 1.580000e-100 377
23 TraesCS4B01G252500 chr1D 92.776 263 15 4 261 519 97740413 97740151 1.580000e-100 377
24 TraesCS4B01G252500 chr5D 92.424 264 18 2 258 519 317453958 317454221 5.670000e-100 375
25 TraesCS4B01G252500 chr5D 88.066 243 25 4 4 246 447300661 447300899 9.820000e-73 285
26 TraesCS4B01G252500 chr5D 86.420 243 29 3 4 246 428530104 428529866 4.600000e-66 263
27 TraesCS4B01G252500 chr6D 90.123 243 23 1 4 246 366690177 366689936 1.250000e-81 315
28 TraesCS4B01G252500 chr7D 89.712 243 21 4 4 246 481829259 481829021 2.100000e-79 307
29 TraesCS4B01G252500 chr7D 86.008 243 32 2 4 246 169987809 169987569 5.950000e-65 259
30 TraesCS4B01G252500 chr7B 87.764 237 26 3 5 241 467538027 467538260 2.130000e-69 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G252500 chr4B 518636461 518642449 5988 False 11060.0 11060 100.0000 1 5989 1 chr4B.!!$F1 5988
1 TraesCS4B01G252500 chr4A 42274563 42280024 5461 True 3734.5 6135 92.3210 556 5989 2 chr4A.!!$R1 5433
2 TraesCS4B01G252500 chr4D 421525554 421531434 5880 False 3466.5 3969 90.8275 652 5989 2 chr4D.!!$F1 5337
3 TraesCS4B01G252500 chr6B 272817182 272817889 707 True 989.0 989 91.6320 1842 2570 1 chr6B.!!$R2 728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 962 0.033366 CTTCCCCGGCCAAAAACAAG 59.967 55.000 2.24 0.0 0.00 3.16 F
1641 1728 0.540365 TTGCCCTTTTCCTGCCTCTG 60.540 55.000 0.00 0.0 0.00 3.35 F
2607 2728 1.219393 GCGAGGGGAGTTCTCAAGG 59.781 63.158 2.24 0.0 0.00 3.61 F
4347 4965 0.459237 CCGAGAGCAACTTCAGCGAT 60.459 55.000 0.00 0.0 37.01 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 2374 1.428869 ACCAGGAGAACAGCAGAAGT 58.571 50.000 0.0 0.0 0.00 3.01 R
2703 2824 1.579964 TTGCTTCATGCCTCAGTGCG 61.580 55.000 0.0 0.0 42.00 5.34 R
4446 5064 0.100325 CGAAGCTGCTCTCAGACGAT 59.900 55.000 1.0 0.0 42.95 3.73 R
5201 5831 1.891150 ACTCTTTGCTTGCTGGAATGG 59.109 47.619 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.847602 CTCGAGGAGGCCCTGCAG 61.848 72.222 6.78 6.78 44.53 4.41
27 28 4.792804 GAGGAGGCCCTGCAGCAC 62.793 72.222 8.66 1.36 44.53 4.40
46 47 4.208686 CGCTGGAGGGTAGCCGAC 62.209 72.222 5.06 3.06 37.90 4.79
47 48 2.760385 GCTGGAGGGTAGCCGACT 60.760 66.667 5.06 0.00 35.15 4.18
48 49 2.787567 GCTGGAGGGTAGCCGACTC 61.788 68.421 5.06 0.00 35.15 3.36
49 50 2.439701 TGGAGGGTAGCCGACTCG 60.440 66.667 5.06 0.00 31.62 4.18
50 51 2.124403 GGAGGGTAGCCGACTCGA 60.124 66.667 5.06 0.00 31.62 4.04
51 52 2.188161 GGAGGGTAGCCGACTCGAG 61.188 68.421 11.84 11.84 31.62 4.04
52 53 2.124236 AGGGTAGCCGACTCGAGG 60.124 66.667 18.41 0.23 31.62 4.63
53 54 2.124403 GGGTAGCCGACTCGAGGA 60.124 66.667 18.41 0.00 0.00 3.71
54 55 2.188161 GGGTAGCCGACTCGAGGAG 61.188 68.421 18.41 9.87 35.52 3.69
55 56 2.188161 GGTAGCCGACTCGAGGAGG 61.188 68.421 18.41 19.39 33.35 4.30
56 57 1.153208 GTAGCCGACTCGAGGAGGA 60.153 63.158 26.16 8.69 33.35 3.71
57 58 1.153208 TAGCCGACTCGAGGAGGAC 60.153 63.158 26.16 18.33 33.35 3.85
58 59 2.919960 TAGCCGACTCGAGGAGGACG 62.920 65.000 26.16 17.59 33.35 4.79
59 60 3.878519 CCGACTCGAGGAGGACGC 61.879 72.222 18.41 0.00 34.44 5.19
60 61 3.125573 CGACTCGAGGAGGACGCA 61.126 66.667 18.41 0.00 33.35 5.24
61 62 2.486042 GACTCGAGGAGGACGCAC 59.514 66.667 18.41 0.00 33.35 5.34
62 63 2.282251 ACTCGAGGAGGACGCACA 60.282 61.111 18.41 0.00 33.35 4.57
63 64 1.658686 GACTCGAGGAGGACGCACAT 61.659 60.000 18.41 0.00 33.35 3.21
64 65 1.251527 ACTCGAGGAGGACGCACATT 61.252 55.000 18.41 0.00 33.35 2.71
65 66 0.738975 CTCGAGGAGGACGCACATTA 59.261 55.000 3.91 0.00 0.00 1.90
66 67 0.738975 TCGAGGAGGACGCACATTAG 59.261 55.000 0.00 0.00 0.00 1.73
67 68 0.249073 CGAGGAGGACGCACATTAGG 60.249 60.000 0.00 0.00 0.00 2.69
68 69 0.105039 GAGGAGGACGCACATTAGGG 59.895 60.000 0.00 0.00 0.00 3.53
69 70 1.523938 GGAGGACGCACATTAGGGC 60.524 63.158 0.00 0.00 0.00 5.19
75 76 3.196648 GCACATTAGGGCGGGTTG 58.803 61.111 0.00 0.00 0.00 3.77
76 77 2.414785 GCACATTAGGGCGGGTTGG 61.415 63.158 0.00 0.00 0.00 3.77
77 78 1.301623 CACATTAGGGCGGGTTGGA 59.698 57.895 0.00 0.00 0.00 3.53
78 79 0.748005 CACATTAGGGCGGGTTGGAG 60.748 60.000 0.00 0.00 0.00 3.86
79 80 1.823899 CATTAGGGCGGGTTGGAGC 60.824 63.158 0.00 0.00 0.00 4.70
80 81 2.305607 ATTAGGGCGGGTTGGAGCA 61.306 57.895 0.00 0.00 34.54 4.26
81 82 1.858739 ATTAGGGCGGGTTGGAGCAA 61.859 55.000 0.00 0.00 34.54 3.91
82 83 2.478335 TTAGGGCGGGTTGGAGCAAG 62.478 60.000 0.00 0.00 34.54 4.01
88 89 3.369921 GGTTGGAGCAAGCCCTTG 58.630 61.111 3.70 3.70 43.14 3.61
96 97 2.956987 CAAGCCCTTGCCTTGTCG 59.043 61.111 0.00 0.00 38.69 4.35
97 98 2.282462 AAGCCCTTGCCTTGTCGG 60.282 61.111 0.00 0.00 38.69 4.79
139 140 4.856607 CGCTCTTCGACCCGCCTC 62.857 72.222 0.00 0.00 41.67 4.70
140 141 4.516195 GCTCTTCGACCCGCCTCC 62.516 72.222 0.00 0.00 0.00 4.30
141 142 4.194720 CTCTTCGACCCGCCTCCG 62.195 72.222 0.00 0.00 0.00 4.63
171 172 4.899239 CTGCCCATCGTCGAGCCC 62.899 72.222 0.00 0.00 0.00 5.19
173 174 4.467084 GCCCATCGTCGAGCCCAA 62.467 66.667 0.00 0.00 0.00 4.12
174 175 2.202932 CCCATCGTCGAGCCCAAG 60.203 66.667 0.00 0.00 0.00 3.61
175 176 2.579201 CCATCGTCGAGCCCAAGT 59.421 61.111 0.00 0.00 0.00 3.16
176 177 1.079127 CCATCGTCGAGCCCAAGTT 60.079 57.895 0.00 0.00 0.00 2.66
177 178 1.361668 CCATCGTCGAGCCCAAGTTG 61.362 60.000 0.00 0.00 0.00 3.16
178 179 1.079127 ATCGTCGAGCCCAAGTTGG 60.079 57.895 15.52 15.52 37.25 3.77
179 180 1.541310 ATCGTCGAGCCCAAGTTGGA 61.541 55.000 24.06 0.00 40.96 3.53
180 181 1.079127 CGTCGAGCCCAAGTTGGAT 60.079 57.895 24.06 11.35 40.96 3.41
181 182 1.084370 CGTCGAGCCCAAGTTGGATC 61.084 60.000 24.06 18.19 40.96 3.36
182 183 0.744771 GTCGAGCCCAAGTTGGATCC 60.745 60.000 24.06 4.20 40.96 3.36
183 184 1.815421 CGAGCCCAAGTTGGATCCG 60.815 63.158 24.06 17.34 40.96 4.18
184 185 1.452108 GAGCCCAAGTTGGATCCGG 60.452 63.158 24.06 7.10 40.96 5.14
185 186 1.910580 GAGCCCAAGTTGGATCCGGA 61.911 60.000 24.06 6.61 40.96 5.14
186 187 1.452108 GCCCAAGTTGGATCCGGAG 60.452 63.158 24.06 5.60 40.96 4.63
187 188 1.452108 CCCAAGTTGGATCCGGAGC 60.452 63.158 24.06 12.38 40.96 4.70
188 189 1.452108 CCAAGTTGGATCCGGAGCC 60.452 63.158 32.10 32.10 40.96 4.70
189 190 1.815421 CAAGTTGGATCCGGAGCCG 60.815 63.158 32.30 15.04 40.42 5.52
190 191 1.987855 AAGTTGGATCCGGAGCCGA 60.988 57.895 32.30 28.99 40.42 5.54
191 192 1.338136 AAGTTGGATCCGGAGCCGAT 61.338 55.000 30.93 17.58 40.42 4.18
192 193 1.595382 GTTGGATCCGGAGCCGATG 60.595 63.158 30.93 0.00 40.42 3.84
193 194 3.460672 TTGGATCCGGAGCCGATGC 62.461 63.158 32.30 10.52 40.42 3.91
218 219 4.899239 CTCGCCGCCTCCATCCAC 62.899 72.222 0.00 0.00 0.00 4.02
220 221 4.473520 CGCCGCCTCCATCCACTT 62.474 66.667 0.00 0.00 0.00 3.16
221 222 2.825836 GCCGCCTCCATCCACTTG 60.826 66.667 0.00 0.00 0.00 3.16
222 223 2.124570 CCGCCTCCATCCACTTGG 60.125 66.667 0.00 0.00 38.18 3.61
223 224 2.825836 CGCCTCCATCCACTTGGC 60.826 66.667 0.00 0.00 40.14 4.52
224 225 2.679716 GCCTCCATCCACTTGGCT 59.320 61.111 0.00 0.00 40.36 4.75
225 226 1.751927 GCCTCCATCCACTTGGCTG 60.752 63.158 0.00 0.00 40.36 4.85
226 227 1.993653 CCTCCATCCACTTGGCTGA 59.006 57.895 0.47 0.00 36.66 4.26
227 228 0.329261 CCTCCATCCACTTGGCTGAA 59.671 55.000 0.47 0.00 36.66 3.02
228 229 1.681166 CCTCCATCCACTTGGCTGAAG 60.681 57.143 0.47 0.00 36.66 3.02
229 230 0.329261 TCCATCCACTTGGCTGAAGG 59.671 55.000 0.47 0.00 36.66 3.46
230 231 0.329261 CCATCCACTTGGCTGAAGGA 59.671 55.000 0.47 0.00 35.78 3.36
231 232 1.681166 CCATCCACTTGGCTGAAGGAG 60.681 57.143 0.47 0.00 35.78 3.69
232 233 1.280133 CATCCACTTGGCTGAAGGAGA 59.720 52.381 0.00 0.00 35.78 3.71
233 234 0.687354 TCCACTTGGCTGAAGGAGAC 59.313 55.000 0.00 0.00 35.78 3.36
234 235 0.322008 CCACTTGGCTGAAGGAGACC 60.322 60.000 1.85 0.00 35.78 3.85
235 236 0.689623 CACTTGGCTGAAGGAGACCT 59.310 55.000 0.00 0.00 35.78 3.85
236 237 1.902508 CACTTGGCTGAAGGAGACCTA 59.097 52.381 0.00 0.00 35.78 3.08
237 238 1.903183 ACTTGGCTGAAGGAGACCTAC 59.097 52.381 0.00 0.00 35.78 3.18
238 239 1.902508 CTTGGCTGAAGGAGACCTACA 59.097 52.381 0.00 0.00 31.13 2.74
239 240 1.267121 TGGCTGAAGGAGACCTACAC 58.733 55.000 0.00 0.00 31.13 2.90
240 241 0.173708 GGCTGAAGGAGACCTACACG 59.826 60.000 0.00 0.00 31.13 4.49
241 242 0.889306 GCTGAAGGAGACCTACACGT 59.111 55.000 0.00 0.00 31.13 4.49
242 243 1.272769 GCTGAAGGAGACCTACACGTT 59.727 52.381 0.00 0.00 31.13 3.99
243 244 2.927014 GCTGAAGGAGACCTACACGTTG 60.927 54.545 0.00 0.00 31.13 4.10
244 245 1.616865 TGAAGGAGACCTACACGTTGG 59.383 52.381 0.00 0.00 31.13 3.77
245 246 1.891150 GAAGGAGACCTACACGTTGGA 59.109 52.381 4.63 0.00 31.13 3.53
246 247 1.546961 AGGAGACCTACACGTTGGAG 58.453 55.000 4.63 0.00 28.47 3.86
247 248 1.203025 AGGAGACCTACACGTTGGAGT 60.203 52.381 4.63 0.00 28.47 3.85
248 249 1.617357 GGAGACCTACACGTTGGAGTT 59.383 52.381 4.63 0.00 0.00 3.01
249 250 2.609737 GGAGACCTACACGTTGGAGTTG 60.610 54.545 4.63 0.00 0.00 3.16
250 251 1.145803 GACCTACACGTTGGAGTTGC 58.854 55.000 4.63 0.00 0.00 4.17
251 252 0.756903 ACCTACACGTTGGAGTTGCT 59.243 50.000 4.63 0.00 0.00 3.91
252 253 1.270147 ACCTACACGTTGGAGTTGCTC 60.270 52.381 4.63 0.00 0.00 4.26
253 254 1.000955 CCTACACGTTGGAGTTGCTCT 59.999 52.381 0.00 0.00 0.00 4.09
254 255 2.548067 CCTACACGTTGGAGTTGCTCTT 60.548 50.000 0.00 0.00 0.00 2.85
255 256 2.038387 ACACGTTGGAGTTGCTCTTT 57.962 45.000 0.00 0.00 0.00 2.52
256 257 1.940613 ACACGTTGGAGTTGCTCTTTC 59.059 47.619 0.00 0.00 0.00 2.62
257 258 2.213499 CACGTTGGAGTTGCTCTTTCT 58.787 47.619 0.00 0.00 0.00 2.52
258 259 3.181469 ACACGTTGGAGTTGCTCTTTCTA 60.181 43.478 0.00 0.00 0.00 2.10
259 260 3.184581 CACGTTGGAGTTGCTCTTTCTAC 59.815 47.826 0.00 0.00 0.00 2.59
260 261 2.408704 CGTTGGAGTTGCTCTTTCTACG 59.591 50.000 0.00 0.00 0.00 3.51
261 262 3.391049 GTTGGAGTTGCTCTTTCTACGT 58.609 45.455 0.00 0.00 0.00 3.57
262 263 4.553323 GTTGGAGTTGCTCTTTCTACGTA 58.447 43.478 0.00 0.00 0.00 3.57
263 264 4.170292 TGGAGTTGCTCTTTCTACGTAC 57.830 45.455 0.00 0.00 0.00 3.67
264 265 3.825014 TGGAGTTGCTCTTTCTACGTACT 59.175 43.478 0.00 0.00 0.00 2.73
265 266 4.082895 TGGAGTTGCTCTTTCTACGTACTC 60.083 45.833 0.00 0.00 0.00 2.59
266 267 4.413969 GAGTTGCTCTTTCTACGTACTCC 58.586 47.826 0.00 0.00 0.00 3.85
267 268 3.193056 AGTTGCTCTTTCTACGTACTCCC 59.807 47.826 0.00 0.00 0.00 4.30
268 269 3.083122 TGCTCTTTCTACGTACTCCCT 57.917 47.619 0.00 0.00 0.00 4.20
269 270 3.015327 TGCTCTTTCTACGTACTCCCTC 58.985 50.000 0.00 0.00 0.00 4.30
270 271 3.281158 GCTCTTTCTACGTACTCCCTCT 58.719 50.000 0.00 0.00 0.00 3.69
271 272 3.065648 GCTCTTTCTACGTACTCCCTCTG 59.934 52.174 0.00 0.00 0.00 3.35
272 273 4.263435 CTCTTTCTACGTACTCCCTCTGT 58.737 47.826 0.00 0.00 0.00 3.41
273 274 4.660168 TCTTTCTACGTACTCCCTCTGTT 58.340 43.478 0.00 0.00 0.00 3.16
274 275 5.075493 TCTTTCTACGTACTCCCTCTGTTT 58.925 41.667 0.00 0.00 0.00 2.83
275 276 5.182760 TCTTTCTACGTACTCCCTCTGTTTC 59.817 44.000 0.00 0.00 0.00 2.78
276 277 4.298103 TCTACGTACTCCCTCTGTTTCT 57.702 45.455 0.00 0.00 0.00 2.52
277 278 4.660168 TCTACGTACTCCCTCTGTTTCTT 58.340 43.478 0.00 0.00 0.00 2.52
278 279 5.075493 TCTACGTACTCCCTCTGTTTCTTT 58.925 41.667 0.00 0.00 0.00 2.52
279 280 4.684484 ACGTACTCCCTCTGTTTCTTTT 57.316 40.909 0.00 0.00 0.00 2.27
280 281 5.032327 ACGTACTCCCTCTGTTTCTTTTT 57.968 39.130 0.00 0.00 0.00 1.94
281 282 6.165700 ACGTACTCCCTCTGTTTCTTTTTA 57.834 37.500 0.00 0.00 0.00 1.52
282 283 6.221659 ACGTACTCCCTCTGTTTCTTTTTAG 58.778 40.000 0.00 0.00 0.00 1.85
283 284 6.183360 ACGTACTCCCTCTGTTTCTTTTTAGT 60.183 38.462 0.00 0.00 0.00 2.24
284 285 6.704937 CGTACTCCCTCTGTTTCTTTTTAGTT 59.295 38.462 0.00 0.00 0.00 2.24
285 286 7.226128 CGTACTCCCTCTGTTTCTTTTTAGTTT 59.774 37.037 0.00 0.00 0.00 2.66
286 287 7.334844 ACTCCCTCTGTTTCTTTTTAGTTTG 57.665 36.000 0.00 0.00 0.00 2.93
287 288 6.144078 TCCCTCTGTTTCTTTTTAGTTTGC 57.856 37.500 0.00 0.00 0.00 3.68
288 289 5.654650 TCCCTCTGTTTCTTTTTAGTTTGCA 59.345 36.000 0.00 0.00 0.00 4.08
289 290 6.323739 TCCCTCTGTTTCTTTTTAGTTTGCAT 59.676 34.615 0.00 0.00 0.00 3.96
290 291 7.504238 TCCCTCTGTTTCTTTTTAGTTTGCATA 59.496 33.333 0.00 0.00 0.00 3.14
291 292 8.306761 CCCTCTGTTTCTTTTTAGTTTGCATAT 58.693 33.333 0.00 0.00 0.00 1.78
307 308 9.846248 AGTTTGCATATAAGATTTGTCAAAGTC 57.154 29.630 4.03 2.61 0.00 3.01
308 309 9.624697 GTTTGCATATAAGATTTGTCAAAGTCA 57.375 29.630 4.03 0.00 0.00 3.41
310 311 9.624697 TTGCATATAAGATTTGTCAAAGTCAAC 57.375 29.630 4.03 0.00 0.00 3.18
311 312 9.013229 TGCATATAAGATTTGTCAAAGTCAACT 57.987 29.630 4.03 0.00 0.00 3.16
312 313 9.846248 GCATATAAGATTTGTCAAAGTCAACTT 57.154 29.630 4.03 6.85 37.91 2.66
318 319 9.921637 AAGATTTGTCAAAGTCAACTTTTGTAA 57.078 25.926 5.41 0.00 43.07 2.41
319 320 9.921637 AGATTTGTCAAAGTCAACTTTTGTAAA 57.078 25.926 5.41 7.57 43.07 2.01
349 350 8.635765 AACTAGCTTTGTTGGAAAAGATATCA 57.364 30.769 5.32 0.00 37.39 2.15
350 351 8.635765 ACTAGCTTTGTTGGAAAAGATATCAA 57.364 30.769 5.32 0.00 37.39 2.57
351 352 8.515414 ACTAGCTTTGTTGGAAAAGATATCAAC 58.485 33.333 5.32 0.81 37.39 3.18
352 353 7.288810 AGCTTTGTTGGAAAAGATATCAACA 57.711 32.000 5.32 3.53 44.92 3.33
353 354 7.899973 AGCTTTGTTGGAAAAGATATCAACAT 58.100 30.769 5.32 0.00 45.57 2.71
354 355 8.031277 AGCTTTGTTGGAAAAGATATCAACATC 58.969 33.333 5.32 0.00 45.57 3.06
355 356 7.276438 GCTTTGTTGGAAAAGATATCAACATCC 59.724 37.037 5.32 7.56 45.57 3.51
356 357 7.773489 TTGTTGGAAAAGATATCAACATCCA 57.227 32.000 5.32 9.95 45.57 3.41
357 358 7.156876 TGTTGGAAAAGATATCAACATCCAC 57.843 36.000 15.12 12.02 42.75 4.02
358 359 6.718912 TGTTGGAAAAGATATCAACATCCACA 59.281 34.615 15.12 13.61 42.75 4.17
359 360 6.757897 TGGAAAAGATATCAACATCCACAC 57.242 37.500 5.32 0.00 30.90 3.82
360 361 6.484288 TGGAAAAGATATCAACATCCACACT 58.516 36.000 5.32 0.00 30.90 3.55
361 362 7.629157 TGGAAAAGATATCAACATCCACACTA 58.371 34.615 5.32 0.00 30.90 2.74
362 363 8.274322 TGGAAAAGATATCAACATCCACACTAT 58.726 33.333 5.32 0.00 30.90 2.12
363 364 8.562892 GGAAAAGATATCAACATCCACACTATG 58.437 37.037 5.32 0.00 0.00 2.23
364 365 9.330063 GAAAAGATATCAACATCCACACTATGA 57.670 33.333 5.32 0.00 0.00 2.15
365 366 9.685276 AAAAGATATCAACATCCACACTATGAA 57.315 29.630 5.32 0.00 0.00 2.57
366 367 9.685276 AAAGATATCAACATCCACACTATGAAA 57.315 29.630 5.32 0.00 0.00 2.69
367 368 9.857656 AAGATATCAACATCCACACTATGAAAT 57.142 29.630 5.32 0.00 0.00 2.17
368 369 9.499479 AGATATCAACATCCACACTATGAAATC 57.501 33.333 5.32 0.00 0.00 2.17
369 370 9.276590 GATATCAACATCCACACTATGAAATCA 57.723 33.333 0.00 0.00 0.00 2.57
370 371 7.943079 ATCAACATCCACACTATGAAATCAA 57.057 32.000 0.00 0.00 0.00 2.57
371 372 7.943079 TCAACATCCACACTATGAAATCAAT 57.057 32.000 0.00 0.00 0.00 2.57
372 373 9.631257 ATCAACATCCACACTATGAAATCAATA 57.369 29.630 0.00 0.00 0.00 1.90
373 374 9.460019 TCAACATCCACACTATGAAATCAATAA 57.540 29.630 0.00 0.00 0.00 1.40
497 498 8.166367 GATTTTGATCAAATCTTATATGCGGC 57.834 34.615 21.10 0.00 45.30 6.53
498 499 5.627499 TTGATCAAATCTTATATGCGGCC 57.373 39.130 5.45 0.00 0.00 6.13
499 500 4.910195 TGATCAAATCTTATATGCGGCCT 58.090 39.130 0.00 0.00 0.00 5.19
500 501 6.048732 TGATCAAATCTTATATGCGGCCTA 57.951 37.500 0.00 0.00 0.00 3.93
501 502 6.472016 TGATCAAATCTTATATGCGGCCTAA 58.528 36.000 0.00 0.00 0.00 2.69
502 503 6.939730 TGATCAAATCTTATATGCGGCCTAAA 59.060 34.615 0.00 0.00 0.00 1.85
503 504 7.446931 TGATCAAATCTTATATGCGGCCTAAAA 59.553 33.333 0.00 0.00 0.00 1.52
504 505 7.575414 TCAAATCTTATATGCGGCCTAAAAA 57.425 32.000 0.00 0.00 0.00 1.94
527 528 7.797121 AAATTGGAGGGAGTACAATTTGATT 57.203 32.000 12.20 0.00 46.84 2.57
528 529 8.893563 AAATTGGAGGGAGTACAATTTGATTA 57.106 30.769 12.20 0.00 46.84 1.75
529 530 9.492730 AAATTGGAGGGAGTACAATTTGATTAT 57.507 29.630 12.20 0.00 46.84 1.28
530 531 7.880160 TTGGAGGGAGTACAATTTGATTATG 57.120 36.000 2.79 0.00 0.00 1.90
531 532 6.364701 TGGAGGGAGTACAATTTGATTATGG 58.635 40.000 2.79 0.00 0.00 2.74
532 533 6.159575 TGGAGGGAGTACAATTTGATTATGGA 59.840 38.462 2.79 0.00 0.00 3.41
533 534 7.147141 TGGAGGGAGTACAATTTGATTATGGAT 60.147 37.037 2.79 0.00 0.00 3.41
534 535 7.391833 GGAGGGAGTACAATTTGATTATGGATC 59.608 40.741 2.79 0.00 35.21 3.36
535 536 7.815383 AGGGAGTACAATTTGATTATGGATCA 58.185 34.615 2.79 0.00 42.95 2.92
536 537 7.721399 AGGGAGTACAATTTGATTATGGATCAC 59.279 37.037 2.79 0.00 44.28 3.06
537 538 7.307989 GGGAGTACAATTTGATTATGGATCACG 60.308 40.741 2.79 0.00 44.28 4.35
538 539 7.441157 GGAGTACAATTTGATTATGGATCACGA 59.559 37.037 2.79 0.00 44.28 4.35
539 540 8.908786 AGTACAATTTGATTATGGATCACGAT 57.091 30.769 2.79 0.00 44.28 3.73
540 541 8.777413 AGTACAATTTGATTATGGATCACGATG 58.223 33.333 2.79 0.00 44.28 3.84
541 542 6.441274 ACAATTTGATTATGGATCACGATGC 58.559 36.000 2.79 0.00 44.28 3.91
542 543 4.730600 TTTGATTATGGATCACGATGCG 57.269 40.909 0.00 0.00 44.28 4.73
543 544 3.658757 TGATTATGGATCACGATGCGA 57.341 42.857 0.00 0.00 39.83 5.10
544 545 3.988819 TGATTATGGATCACGATGCGAA 58.011 40.909 0.00 0.00 39.83 4.70
545 546 4.376146 TGATTATGGATCACGATGCGAAA 58.624 39.130 0.00 0.00 39.83 3.46
546 547 4.448732 TGATTATGGATCACGATGCGAAAG 59.551 41.667 0.00 0.00 39.83 2.62
547 548 4.667668 GATTATGGATCACGATGCGAAAGC 60.668 45.833 0.00 0.00 45.58 3.51
567 568 3.121030 CCGCGCAAGGTTCCTCTG 61.121 66.667 8.75 0.00 38.28 3.35
571 572 3.882025 GCAAGGTTCCTCTGCGAG 58.118 61.111 9.08 0.00 0.00 5.03
596 597 4.064388 GAGCTTTATGGCCATCTTCTCTC 58.936 47.826 24.80 18.32 0.00 3.20
597 598 3.715834 AGCTTTATGGCCATCTTCTCTCT 59.284 43.478 24.80 8.60 0.00 3.10
599 600 3.482156 TTATGGCCATCTTCTCTCTGC 57.518 47.619 24.80 0.00 0.00 4.26
600 601 1.509373 ATGGCCATCTTCTCTCTGCT 58.491 50.000 14.09 0.00 0.00 4.24
601 602 0.829333 TGGCCATCTTCTCTCTGCTC 59.171 55.000 0.00 0.00 0.00 4.26
602 603 0.106521 GGCCATCTTCTCTCTGCTCC 59.893 60.000 0.00 0.00 0.00 4.70
603 604 0.829333 GCCATCTTCTCTCTGCTCCA 59.171 55.000 0.00 0.00 0.00 3.86
604 605 1.209019 GCCATCTTCTCTCTGCTCCAA 59.791 52.381 0.00 0.00 0.00 3.53
605 606 2.158784 GCCATCTTCTCTCTGCTCCAAT 60.159 50.000 0.00 0.00 0.00 3.16
606 607 3.731089 CCATCTTCTCTCTGCTCCAATC 58.269 50.000 0.00 0.00 0.00 2.67
607 608 3.382855 CATCTTCTCTCTGCTCCAATCG 58.617 50.000 0.00 0.00 0.00 3.34
611 612 0.809241 CTCTCTGCTCCAATCGTGGC 60.809 60.000 0.00 0.00 45.54 5.01
613 614 3.197790 CTGCTCCAATCGTGGCCG 61.198 66.667 0.00 0.00 45.54 6.13
766 779 4.709397 TCCCCCACAATTAATTACAAGCTG 59.291 41.667 0.00 0.00 0.00 4.24
767 780 4.432712 CCCCACAATTAATTACAAGCTGC 58.567 43.478 0.00 0.00 0.00 5.25
768 781 4.160252 CCCCACAATTAATTACAAGCTGCT 59.840 41.667 0.00 0.00 0.00 4.24
784 797 3.203412 CTCCGGACGGACCTCGAG 61.203 72.222 9.76 5.13 39.76 4.04
785 798 3.677284 CTCCGGACGGACCTCGAGA 62.677 68.421 15.71 0.00 39.76 4.04
886 936 3.346870 CCCCCTTCCATCCCCTTC 58.653 66.667 0.00 0.00 0.00 3.46
887 937 2.395353 CCCCCTTCCATCCCCTTCC 61.395 68.421 0.00 0.00 0.00 3.46
888 938 2.395353 CCCCTTCCATCCCCTTCCC 61.395 68.421 0.00 0.00 0.00 3.97
889 939 1.309102 CCCTTCCATCCCCTTCCCT 60.309 63.158 0.00 0.00 0.00 4.20
890 940 0.926220 CCCTTCCATCCCCTTCCCTT 60.926 60.000 0.00 0.00 0.00 3.95
891 941 0.553333 CCTTCCATCCCCTTCCCTTC 59.447 60.000 0.00 0.00 0.00 3.46
892 942 0.553333 CTTCCATCCCCTTCCCTTCC 59.447 60.000 0.00 0.00 0.00 3.46
912 962 0.033366 CTTCCCCGGCCAAAAACAAG 59.967 55.000 2.24 0.00 0.00 3.16
1050 1100 2.276740 CCAGAACCAGATGGCCCC 59.723 66.667 0.00 0.00 39.32 5.80
1357 1431 2.105128 CAGATCCGGTGACTCGCC 59.895 66.667 0.00 0.00 0.00 5.54
1454 1529 3.197790 CCGGCATCTGCAAGTCGG 61.198 66.667 11.36 11.36 44.36 4.79
1458 1533 2.334946 GCATCTGCAAGTCGGCCAA 61.335 57.895 2.24 0.00 41.59 4.52
1472 1547 2.659016 CCAAGCTGCACTCGAGGA 59.341 61.111 18.41 0.00 0.00 3.71
1525 1612 2.511600 GATTCGGACCACGGCCTG 60.512 66.667 0.00 0.00 44.45 4.85
1526 1613 3.000819 ATTCGGACCACGGCCTGA 61.001 61.111 0.00 0.00 44.45 3.86
1621 1708 1.731160 CAACTGCTCTGCTTAGTCTGC 59.269 52.381 0.00 0.00 0.00 4.26
1633 1720 2.200373 TAGTCTGCTTGCCCTTTTCC 57.800 50.000 0.00 0.00 0.00 3.13
1637 1724 2.163601 CTGCTTGCCCTTTTCCTGCC 62.164 60.000 0.00 0.00 0.00 4.85
1639 1726 1.881903 GCTTGCCCTTTTCCTGCCTC 61.882 60.000 0.00 0.00 0.00 4.70
1641 1728 0.540365 TTGCCCTTTTCCTGCCTCTG 60.540 55.000 0.00 0.00 0.00 3.35
1668 1755 1.519455 GCCTCCGTTCAGATGACCG 60.519 63.158 0.00 0.00 0.00 4.79
1777 1891 4.317348 GCAATTTCGCAAAGTGTTGTCTTC 60.317 41.667 9.59 0.00 38.61 2.87
1991 2108 3.569701 TGGCATGACTTCTTCACCTTTTC 59.430 43.478 0.00 0.00 36.92 2.29
2121 2238 8.668353 TGCAGAGTAAGATACATTTTCAATGTC 58.332 33.333 5.39 0.00 33.76 3.06
2164 2281 2.415090 CCTGCTTCCTTTCAAGAATGCG 60.415 50.000 0.00 0.00 0.00 4.73
2257 2374 8.383175 ACTACAAAGGGTTCTTCATTCTAATGA 58.617 33.333 1.23 1.23 43.28 2.57
2324 2441 5.085920 ACCACAATGGGATCTGAAAATGAA 58.914 37.500 0.00 0.00 43.37 2.57
2607 2728 1.219393 GCGAGGGGAGTTCTCAAGG 59.781 63.158 2.24 0.00 0.00 3.61
2661 2782 7.806690 TCTCAACTGTAGCATTTGTAATTGTC 58.193 34.615 0.00 0.00 0.00 3.18
2703 2824 7.817418 TTTTCCTATCCAATACATGCTTACC 57.183 36.000 0.00 0.00 0.00 2.85
2741 2862 8.272176 TGAAGCAAAAATTTATTTACAGCGTTG 58.728 29.630 0.00 0.00 0.00 4.10
3030 3181 6.047511 ACATGTTTGGCCATAATTTTGCTA 57.952 33.333 6.09 0.00 0.00 3.49
3037 3188 5.358922 TGGCCATAATTTTGCTATTGCTTC 58.641 37.500 0.00 0.00 40.48 3.86
3121 3428 5.394005 CCAATTCTTTCGGCATATTTGTGGA 60.394 40.000 0.00 0.00 0.00 4.02
3123 3430 4.898829 TCTTTCGGCATATTTGTGGATG 57.101 40.909 0.00 0.00 0.00 3.51
3224 3545 7.231467 AGTACAATTTCCTCAACCTGTTATGT 58.769 34.615 0.00 0.00 0.00 2.29
3228 3549 6.764308 ATTTCCTCAACCTGTTATGTCATG 57.236 37.500 0.00 0.00 0.00 3.07
3229 3550 4.220693 TCCTCAACCTGTTATGTCATGG 57.779 45.455 0.00 0.00 0.00 3.66
3584 4195 2.681848 CACAGATCCTGGATGTGAAAGC 59.318 50.000 33.10 10.46 45.67 3.51
3656 4273 9.681692 TCGCATCAATTTTCCTATGAATAATTG 57.318 29.630 14.68 14.68 38.54 2.32
3787 4404 1.446907 CACCTGCTCTCATGTTGTCC 58.553 55.000 0.00 0.00 0.00 4.02
3788 4405 1.002888 CACCTGCTCTCATGTTGTCCT 59.997 52.381 0.00 0.00 0.00 3.85
3791 4408 3.133721 ACCTGCTCTCATGTTGTCCTATC 59.866 47.826 0.00 0.00 0.00 2.08
3847 4464 9.529325 GCATGTTGTCAGATTAGTAACTATACA 57.471 33.333 0.00 0.00 34.29 2.29
3933 4551 5.113383 TGAATACCCACAGTTAGTATTGCG 58.887 41.667 8.96 0.00 36.94 4.85
3978 4596 6.655848 ACTGGTGTTGAACAACAAGTACTAAA 59.344 34.615 17.58 0.00 46.38 1.85
4018 4636 4.083164 TCAAACATGTGCTGATGCTTACTG 60.083 41.667 0.00 0.00 40.48 2.74
4024 4642 2.807967 GTGCTGATGCTTACTGTTCACA 59.192 45.455 0.00 0.00 40.48 3.58
4031 4649 6.446318 TGATGCTTACTGTTCACATTTTTCC 58.554 36.000 0.00 0.00 0.00 3.13
4099 4717 3.307975 CCCTGGAAGCAAGAAGATGAAGA 60.308 47.826 0.00 0.00 0.00 2.87
4125 4743 4.006319 CGGAAGGAGCAAGAAGAAGAAAT 58.994 43.478 0.00 0.00 0.00 2.17
4131 4749 4.378874 GGAGCAAGAAGAAGAAATGGAACG 60.379 45.833 0.00 0.00 0.00 3.95
4227 4845 5.190357 AGAAATCCAAGATTCTGAAGCCT 57.810 39.130 1.43 0.00 34.70 4.58
4257 4875 1.696336 CAAGACCCTCCGATCATCCAT 59.304 52.381 0.00 0.00 0.00 3.41
4305 4923 2.224329 CGAACTCTCTCTCGATCCCCTA 60.224 54.545 0.00 0.00 37.23 3.53
4317 4935 1.557371 GATCCCCTAGCAAGGCTATCC 59.443 57.143 0.00 0.00 40.54 2.59
4344 4962 1.905922 GCACCGAGAGCAACTTCAGC 61.906 60.000 0.00 0.00 0.00 4.26
4347 4965 0.459237 CCGAGAGCAACTTCAGCGAT 60.459 55.000 0.00 0.00 37.01 4.58
4381 4999 1.553690 TTCTGCCAGTCTAGCCCCAC 61.554 60.000 0.00 0.00 0.00 4.61
4446 5064 1.667154 CCTCCAGAATCGCCGTCTCA 61.667 60.000 0.00 0.00 0.00 3.27
4450 5068 0.248661 CAGAATCGCCGTCTCATCGT 60.249 55.000 0.00 0.00 0.00 3.73
4526 5144 1.079127 CCGACGAAATGCTGGGAGT 60.079 57.895 0.00 0.00 0.00 3.85
4527 5145 0.673644 CCGACGAAATGCTGGGAGTT 60.674 55.000 0.00 0.00 0.00 3.01
4528 5146 1.404986 CCGACGAAATGCTGGGAGTTA 60.405 52.381 0.00 0.00 0.00 2.24
4632 5250 1.661821 CCGCATCCCGTCGAGAATC 60.662 63.158 0.00 0.00 34.38 2.52
4712 5330 0.968901 CCTGACCAGCACATGCCATT 60.969 55.000 0.00 0.00 43.38 3.16
4740 5358 4.164843 AGGGTTTCTTAACAACAGCAGA 57.835 40.909 0.00 0.00 35.92 4.26
4744 5362 5.335191 GGGTTTCTTAACAACAGCAGATCAG 60.335 44.000 0.00 0.00 35.92 2.90
4774 5392 2.636647 TGTGCTCATCTGACCAACAA 57.363 45.000 0.00 0.00 0.00 2.83
4809 5427 1.964373 CTGCGTGGTGTTGGTACCC 60.964 63.158 10.07 0.00 40.09 3.69
4888 5507 6.117975 TCTAGGGTTAGGTTTTGTTAGTGG 57.882 41.667 0.00 0.00 0.00 4.00
4889 5508 4.801521 AGGGTTAGGTTTTGTTAGTGGT 57.198 40.909 0.00 0.00 0.00 4.16
4982 5604 2.287915 GTGTGTTTCGACAGATTGCAGT 59.712 45.455 0.00 0.00 0.00 4.40
4983 5605 2.942376 TGTGTTTCGACAGATTGCAGTT 59.058 40.909 0.00 0.00 0.00 3.16
4984 5606 3.242706 TGTGTTTCGACAGATTGCAGTTG 60.243 43.478 0.00 0.00 0.00 3.16
4992 5614 4.388773 CGACAGATTGCAGTTGTTAAGCTA 59.611 41.667 0.00 0.00 0.00 3.32
5036 5658 7.112779 TGATGATCTATCTCTATTACCGCTCA 58.887 38.462 0.00 0.00 36.71 4.26
5039 5661 7.112779 TGATCTATCTCTATTACCGCTCATCA 58.887 38.462 0.00 0.00 0.00 3.07
5053 5675 3.612423 CGCTCATCATCTTGTGTTCGTTA 59.388 43.478 0.00 0.00 0.00 3.18
5070 5692 4.507710 TCGTTACGTACCAGACTATCAGT 58.492 43.478 4.24 0.00 0.00 3.41
5074 5696 4.226427 ACGTACCAGACTATCAGTGGTA 57.774 45.455 0.00 0.00 42.99 3.25
5078 5700 1.067212 CCAGACTATCAGTGGTACGGC 59.933 57.143 0.00 0.00 0.00 5.68
5085 5707 1.262417 TCAGTGGTACGGCAGATTGA 58.738 50.000 0.00 0.00 0.00 2.57
5113 5743 0.963355 TTACCTGCCAATCGGTTGCC 60.963 55.000 1.86 0.00 34.76 4.52
5201 5831 0.179073 ATCATACGAGCACAGTGCCC 60.179 55.000 22.41 9.80 46.52 5.36
5220 5850 1.203994 CCCATTCCAGCAAGCAAAGAG 59.796 52.381 0.00 0.00 0.00 2.85
5222 5852 2.352421 CCATTCCAGCAAGCAAAGAGTG 60.352 50.000 0.00 0.00 0.00 3.51
5223 5853 2.346766 TTCCAGCAAGCAAAGAGTGA 57.653 45.000 0.00 0.00 0.00 3.41
5224 5854 1.888215 TCCAGCAAGCAAAGAGTGAG 58.112 50.000 0.00 0.00 0.00 3.51
5270 5914 1.748493 AGCGCCAAACACAAAAAGAGA 59.252 42.857 2.29 0.00 0.00 3.10
5272 5916 2.926838 GCGCCAAACACAAAAAGAGAAA 59.073 40.909 0.00 0.00 0.00 2.52
5274 5918 4.143009 GCGCCAAACACAAAAAGAGAAAAA 60.143 37.500 0.00 0.00 0.00 1.94
5297 5957 7.712204 AAAAAGAGAGAAACCCACAAAGTTA 57.288 32.000 0.00 0.00 0.00 2.24
5450 6110 8.818141 TGAACATAAGTACAAAAGAGACAGAG 57.182 34.615 0.00 0.00 0.00 3.35
5529 6193 3.190535 GGGCGCTTATGAAGTTTCTTCAA 59.809 43.478 7.64 1.13 31.55 2.69
5603 6267 5.106830 GGGTGTAATTTACAAAGGACAGTCG 60.107 44.000 10.73 0.00 40.93 4.18
5658 6322 4.201950 GGATGGCATAACTACTTGCTGTTG 60.202 45.833 0.00 0.00 38.88 3.33
5695 6360 5.772825 AAAAACTTCAGCTGCTACATCAA 57.227 34.783 9.47 0.00 0.00 2.57
5777 6442 3.369546 ACTGCAAAACAAGGGAAATCG 57.630 42.857 0.00 0.00 0.00 3.34
5792 6457 4.202367 GGGAAATCGGACTGGTCAGAATAT 60.202 45.833 7.55 0.00 37.35 1.28
5970 6635 6.757237 TGCAAATCAGTGTCCATTAAACATT 58.243 32.000 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.847602 CTGCAGGGCCTCCTCGAG 61.848 72.222 0.95 5.13 42.67 4.04
10 11 4.792804 GTGCTGCAGGGCCTCCTC 62.793 72.222 17.12 0.00 42.67 3.71
29 30 4.208686 GTCGGCTACCCTCCAGCG 62.209 72.222 0.00 0.00 40.05 5.18
30 31 2.760385 AGTCGGCTACCCTCCAGC 60.760 66.667 0.00 0.00 38.35 4.85
31 32 2.482333 CGAGTCGGCTACCCTCCAG 61.482 68.421 4.10 0.00 0.00 3.86
32 33 2.439701 CGAGTCGGCTACCCTCCA 60.440 66.667 4.10 0.00 0.00 3.86
33 34 2.124403 TCGAGTCGGCTACCCTCC 60.124 66.667 13.54 0.00 0.00 4.30
34 35 2.188161 CCTCGAGTCGGCTACCCTC 61.188 68.421 13.54 0.00 0.00 4.30
35 36 2.124236 CCTCGAGTCGGCTACCCT 60.124 66.667 13.54 0.00 0.00 4.34
36 37 2.124403 TCCTCGAGTCGGCTACCC 60.124 66.667 13.54 0.00 0.00 3.69
37 38 2.188161 CCTCCTCGAGTCGGCTACC 61.188 68.421 13.54 0.00 0.00 3.18
38 39 1.153208 TCCTCCTCGAGTCGGCTAC 60.153 63.158 13.54 0.00 0.00 3.58
39 40 1.153208 GTCCTCCTCGAGTCGGCTA 60.153 63.158 13.54 0.00 0.00 3.93
40 41 2.438795 GTCCTCCTCGAGTCGGCT 60.439 66.667 13.54 0.00 0.00 5.52
41 42 3.878519 CGTCCTCCTCGAGTCGGC 61.879 72.222 13.54 6.63 0.00 5.54
42 43 3.878519 GCGTCCTCCTCGAGTCGG 61.879 72.222 13.54 11.09 0.00 4.79
43 44 3.125573 TGCGTCCTCCTCGAGTCG 61.126 66.667 12.31 6.09 0.00 4.18
44 45 1.658686 ATGTGCGTCCTCCTCGAGTC 61.659 60.000 12.31 0.00 0.00 3.36
45 46 1.251527 AATGTGCGTCCTCCTCGAGT 61.252 55.000 12.31 0.00 0.00 4.18
46 47 0.738975 TAATGTGCGTCCTCCTCGAG 59.261 55.000 5.13 5.13 0.00 4.04
47 48 0.738975 CTAATGTGCGTCCTCCTCGA 59.261 55.000 0.00 0.00 0.00 4.04
48 49 0.249073 CCTAATGTGCGTCCTCCTCG 60.249 60.000 0.00 0.00 0.00 4.63
49 50 0.105039 CCCTAATGTGCGTCCTCCTC 59.895 60.000 0.00 0.00 0.00 3.71
50 51 1.972660 GCCCTAATGTGCGTCCTCCT 61.973 60.000 0.00 0.00 0.00 3.69
51 52 1.523938 GCCCTAATGTGCGTCCTCC 60.524 63.158 0.00 0.00 0.00 4.30
52 53 1.883084 CGCCCTAATGTGCGTCCTC 60.883 63.158 0.00 0.00 45.43 3.71
53 54 2.186903 CGCCCTAATGTGCGTCCT 59.813 61.111 0.00 0.00 45.43 3.85
58 59 2.414785 CCAACCCGCCCTAATGTGC 61.415 63.158 0.00 0.00 0.00 4.57
59 60 0.748005 CTCCAACCCGCCCTAATGTG 60.748 60.000 0.00 0.00 0.00 3.21
60 61 1.607612 CTCCAACCCGCCCTAATGT 59.392 57.895 0.00 0.00 0.00 2.71
61 62 1.823899 GCTCCAACCCGCCCTAATG 60.824 63.158 0.00 0.00 0.00 1.90
62 63 1.858739 TTGCTCCAACCCGCCCTAAT 61.859 55.000 0.00 0.00 0.00 1.73
63 64 2.478335 CTTGCTCCAACCCGCCCTAA 62.478 60.000 0.00 0.00 0.00 2.69
64 65 2.931105 TTGCTCCAACCCGCCCTA 60.931 61.111 0.00 0.00 0.00 3.53
65 66 4.351054 CTTGCTCCAACCCGCCCT 62.351 66.667 0.00 0.00 0.00 5.19
69 70 3.868200 AAGGGCTTGCTCCAACCCG 62.868 63.158 0.00 0.00 38.65 5.28
70 71 2.118294 AAGGGCTTGCTCCAACCC 59.882 61.111 0.00 0.00 36.02 4.11
71 72 3.369921 CAAGGGCTTGCTCCAACC 58.630 61.111 0.00 0.00 33.45 3.77
124 125 4.194720 CGGAGGCGGGTCGAAGAG 62.195 72.222 0.00 0.00 36.95 2.85
154 155 4.899239 GGGCTCGACGATGGGCAG 62.899 72.222 11.82 0.00 0.00 4.85
156 157 4.467084 TTGGGCTCGACGATGGGC 62.467 66.667 0.00 0.00 0.00 5.36
157 158 2.202932 CTTGGGCTCGACGATGGG 60.203 66.667 0.00 0.00 0.00 4.00
158 159 1.079127 AACTTGGGCTCGACGATGG 60.079 57.895 0.00 0.00 0.00 3.51
159 160 1.361668 CCAACTTGGGCTCGACGATG 61.362 60.000 0.00 0.00 32.67 3.84
160 161 1.079127 CCAACTTGGGCTCGACGAT 60.079 57.895 0.00 0.00 32.67 3.73
161 162 1.541310 ATCCAACTTGGGCTCGACGA 61.541 55.000 8.01 0.00 38.32 4.20
162 163 1.079127 ATCCAACTTGGGCTCGACG 60.079 57.895 8.01 0.00 38.32 5.12
163 164 0.744771 GGATCCAACTTGGGCTCGAC 60.745 60.000 6.95 0.00 38.32 4.20
164 165 1.602237 GGATCCAACTTGGGCTCGA 59.398 57.895 6.95 0.00 38.32 4.04
165 166 1.815421 CGGATCCAACTTGGGCTCG 60.815 63.158 13.41 5.75 38.32 5.03
166 167 1.452108 CCGGATCCAACTTGGGCTC 60.452 63.158 13.41 5.54 38.32 4.70
167 168 1.915078 CTCCGGATCCAACTTGGGCT 61.915 60.000 13.41 0.00 38.32 5.19
168 169 1.452108 CTCCGGATCCAACTTGGGC 60.452 63.158 13.41 1.00 38.32 5.36
169 170 1.452108 GCTCCGGATCCAACTTGGG 60.452 63.158 13.41 3.47 38.32 4.12
170 171 1.452108 GGCTCCGGATCCAACTTGG 60.452 63.158 19.59 4.27 39.43 3.61
171 172 1.815421 CGGCTCCGGATCCAACTTG 60.815 63.158 23.60 3.52 35.56 3.16
172 173 1.338136 ATCGGCTCCGGATCCAACTT 61.338 55.000 23.60 2.58 40.25 2.66
173 174 1.762460 ATCGGCTCCGGATCCAACT 60.762 57.895 23.60 4.90 40.25 3.16
174 175 1.595382 CATCGGCTCCGGATCCAAC 60.595 63.158 23.60 2.81 40.25 3.77
175 176 2.821685 CATCGGCTCCGGATCCAA 59.178 61.111 23.60 6.24 40.25 3.53
176 177 3.928779 GCATCGGCTCCGGATCCA 61.929 66.667 23.60 11.43 40.25 3.41
178 179 2.971428 TTTCGCATCGGCTCCGGATC 62.971 60.000 3.57 0.00 40.25 3.36
179 180 2.978452 CTTTCGCATCGGCTCCGGAT 62.978 60.000 3.57 0.00 40.25 4.18
180 181 3.716539 CTTTCGCATCGGCTCCGGA 62.717 63.158 2.93 2.93 40.25 5.14
181 182 3.264897 CTTTCGCATCGGCTCCGG 61.265 66.667 8.59 0.00 40.25 5.14
182 183 3.929948 GCTTTCGCATCGGCTCCG 61.930 66.667 1.14 1.14 38.10 4.63
183 184 3.929948 CGCTTTCGCATCGGCTCC 61.930 66.667 0.00 0.00 38.10 4.70
201 202 4.899239 GTGGATGGAGGCGGCGAG 62.899 72.222 12.98 0.00 0.00 5.03
203 204 4.473520 AAGTGGATGGAGGCGGCG 62.474 66.667 0.51 0.51 0.00 6.46
204 205 2.825836 CAAGTGGATGGAGGCGGC 60.826 66.667 0.00 0.00 0.00 6.53
205 206 2.124570 CCAAGTGGATGGAGGCGG 60.125 66.667 0.00 0.00 43.54 6.13
206 207 2.825836 GCCAAGTGGATGGAGGCG 60.826 66.667 0.18 0.00 43.54 5.52
207 208 2.679716 AGCCAAGTGGATGGAGGC 59.320 61.111 0.18 0.00 43.54 4.70
213 214 1.280421 GTCTCCTTCAGCCAAGTGGAT 59.720 52.381 0.18 0.00 37.39 3.41
214 215 0.687354 GTCTCCTTCAGCCAAGTGGA 59.313 55.000 0.18 0.00 37.39 4.02
215 216 0.322008 GGTCTCCTTCAGCCAAGTGG 60.322 60.000 0.00 0.00 38.53 4.00
216 217 0.689623 AGGTCTCCTTCAGCCAAGTG 59.310 55.000 0.00 0.00 0.00 3.16
217 218 1.903183 GTAGGTCTCCTTCAGCCAAGT 59.097 52.381 0.00 0.00 34.61 3.16
218 219 1.902508 TGTAGGTCTCCTTCAGCCAAG 59.097 52.381 0.00 0.00 34.61 3.61
219 220 1.623811 GTGTAGGTCTCCTTCAGCCAA 59.376 52.381 0.00 0.00 31.78 4.52
220 221 1.267121 GTGTAGGTCTCCTTCAGCCA 58.733 55.000 0.00 0.00 31.78 4.75
221 222 0.173708 CGTGTAGGTCTCCTTCAGCC 59.826 60.000 0.00 0.00 31.78 4.85
222 223 0.889306 ACGTGTAGGTCTCCTTCAGC 59.111 55.000 0.00 0.00 31.78 4.26
223 224 2.352814 CCAACGTGTAGGTCTCCTTCAG 60.353 54.545 0.00 0.00 31.78 3.02
224 225 1.616865 CCAACGTGTAGGTCTCCTTCA 59.383 52.381 0.00 0.00 34.61 3.02
225 226 1.891150 TCCAACGTGTAGGTCTCCTTC 59.109 52.381 0.00 0.00 34.61 3.46
226 227 1.893801 CTCCAACGTGTAGGTCTCCTT 59.106 52.381 0.00 0.00 34.61 3.36
227 228 1.203025 ACTCCAACGTGTAGGTCTCCT 60.203 52.381 0.00 0.00 37.71 3.69
228 229 1.254954 ACTCCAACGTGTAGGTCTCC 58.745 55.000 0.00 0.00 0.00 3.71
229 230 2.673833 CAACTCCAACGTGTAGGTCTC 58.326 52.381 0.00 0.00 0.00 3.36
230 231 1.270147 GCAACTCCAACGTGTAGGTCT 60.270 52.381 0.00 0.00 0.00 3.85
231 232 1.145803 GCAACTCCAACGTGTAGGTC 58.854 55.000 0.00 0.00 0.00 3.85
232 233 0.756903 AGCAACTCCAACGTGTAGGT 59.243 50.000 0.00 0.00 0.00 3.08
233 234 1.000955 AGAGCAACTCCAACGTGTAGG 59.999 52.381 0.00 0.00 0.00 3.18
234 235 2.440539 AGAGCAACTCCAACGTGTAG 57.559 50.000 0.00 0.00 0.00 2.74
235 236 2.902705 AAGAGCAACTCCAACGTGTA 57.097 45.000 0.00 0.00 0.00 2.90
236 237 1.940613 GAAAGAGCAACTCCAACGTGT 59.059 47.619 0.00 0.00 0.00 4.49
237 238 2.213499 AGAAAGAGCAACTCCAACGTG 58.787 47.619 0.00 0.00 0.00 4.49
238 239 2.622064 AGAAAGAGCAACTCCAACGT 57.378 45.000 0.00 0.00 0.00 3.99
239 240 2.408704 CGTAGAAAGAGCAACTCCAACG 59.591 50.000 0.00 0.00 0.00 4.10
240 241 3.391049 ACGTAGAAAGAGCAACTCCAAC 58.609 45.455 0.00 0.00 0.00 3.77
241 242 3.746045 ACGTAGAAAGAGCAACTCCAA 57.254 42.857 0.00 0.00 0.00 3.53
242 243 3.825014 AGTACGTAGAAAGAGCAACTCCA 59.175 43.478 0.00 0.00 0.00 3.86
243 244 4.413969 GAGTACGTAGAAAGAGCAACTCC 58.586 47.826 0.00 0.00 0.00 3.85
244 245 4.413969 GGAGTACGTAGAAAGAGCAACTC 58.586 47.826 0.00 0.00 33.10 3.01
245 246 3.193056 GGGAGTACGTAGAAAGAGCAACT 59.807 47.826 0.00 0.00 0.00 3.16
246 247 3.193056 AGGGAGTACGTAGAAAGAGCAAC 59.807 47.826 0.00 0.00 0.00 4.17
247 248 3.428532 AGGGAGTACGTAGAAAGAGCAA 58.571 45.455 0.00 0.00 0.00 3.91
248 249 3.015327 GAGGGAGTACGTAGAAAGAGCA 58.985 50.000 0.00 0.00 0.00 4.26
249 250 3.065648 CAGAGGGAGTACGTAGAAAGAGC 59.934 52.174 0.00 0.00 0.00 4.09
250 251 4.263435 ACAGAGGGAGTACGTAGAAAGAG 58.737 47.826 0.00 0.00 0.00 2.85
251 252 4.298103 ACAGAGGGAGTACGTAGAAAGA 57.702 45.455 0.00 0.00 0.00 2.52
252 253 5.183522 AGAAACAGAGGGAGTACGTAGAAAG 59.816 44.000 0.00 0.00 0.00 2.62
253 254 5.075493 AGAAACAGAGGGAGTACGTAGAAA 58.925 41.667 0.00 0.00 0.00 2.52
254 255 4.660168 AGAAACAGAGGGAGTACGTAGAA 58.340 43.478 0.00 0.00 0.00 2.10
255 256 4.298103 AGAAACAGAGGGAGTACGTAGA 57.702 45.455 0.00 0.00 0.00 2.59
256 257 5.388408 AAAGAAACAGAGGGAGTACGTAG 57.612 43.478 0.00 0.00 0.00 3.51
257 258 5.796424 AAAAGAAACAGAGGGAGTACGTA 57.204 39.130 0.00 0.00 0.00 3.57
258 259 4.684484 AAAAGAAACAGAGGGAGTACGT 57.316 40.909 0.00 0.00 0.00 3.57
259 260 6.221659 ACTAAAAAGAAACAGAGGGAGTACG 58.778 40.000 0.00 0.00 0.00 3.67
260 261 8.343366 CAAACTAAAAAGAAACAGAGGGAGTAC 58.657 37.037 0.00 0.00 0.00 2.73
261 262 7.012989 GCAAACTAAAAAGAAACAGAGGGAGTA 59.987 37.037 0.00 0.00 0.00 2.59
262 263 6.183360 GCAAACTAAAAAGAAACAGAGGGAGT 60.183 38.462 0.00 0.00 0.00 3.85
263 264 6.183360 TGCAAACTAAAAAGAAACAGAGGGAG 60.183 38.462 0.00 0.00 0.00 4.30
264 265 5.654650 TGCAAACTAAAAAGAAACAGAGGGA 59.345 36.000 0.00 0.00 0.00 4.20
265 266 5.901552 TGCAAACTAAAAAGAAACAGAGGG 58.098 37.500 0.00 0.00 0.00 4.30
281 282 9.846248 GACTTTGACAAATCTTATATGCAAACT 57.154 29.630 0.05 0.00 0.00 2.66
282 283 9.624697 TGACTTTGACAAATCTTATATGCAAAC 57.375 29.630 0.05 0.00 0.00 2.93
284 285 9.624697 GTTGACTTTGACAAATCTTATATGCAA 57.375 29.630 0.05 0.00 0.00 4.08
285 286 9.013229 AGTTGACTTTGACAAATCTTATATGCA 57.987 29.630 0.05 0.00 0.00 3.96
286 287 9.846248 AAGTTGACTTTGACAAATCTTATATGC 57.154 29.630 0.05 0.00 30.82 3.14
292 293 9.921637 TTACAAAAGTTGACTTTGACAAATCTT 57.078 25.926 9.67 0.15 44.69 2.40
293 294 9.921637 TTTACAAAAGTTGACTTTGACAAATCT 57.078 25.926 9.67 0.00 44.69 2.40
323 324 9.733556 TGATATCTTTTCCAACAAAGCTAGTTA 57.266 29.630 3.98 0.00 34.26 2.24
324 325 8.635765 TGATATCTTTTCCAACAAAGCTAGTT 57.364 30.769 3.98 0.00 34.26 2.24
325 326 8.515414 GTTGATATCTTTTCCAACAAAGCTAGT 58.485 33.333 3.98 0.00 38.84 2.57
326 327 8.514594 TGTTGATATCTTTTCCAACAAAGCTAG 58.485 33.333 3.98 0.00 43.75 3.42
327 328 8.402798 TGTTGATATCTTTTCCAACAAAGCTA 57.597 30.769 3.98 0.00 43.75 3.32
328 329 7.288810 TGTTGATATCTTTTCCAACAAAGCT 57.711 32.000 3.98 0.00 43.75 3.74
334 335 7.029563 GTGTGGATGTTGATATCTTTTCCAAC 58.970 38.462 14.62 7.11 39.29 3.77
335 336 6.947733 AGTGTGGATGTTGATATCTTTTCCAA 59.052 34.615 14.62 6.89 33.85 3.53
336 337 6.484288 AGTGTGGATGTTGATATCTTTTCCA 58.516 36.000 3.98 8.38 0.00 3.53
337 338 8.562892 CATAGTGTGGATGTTGATATCTTTTCC 58.437 37.037 3.98 6.04 0.00 3.13
338 339 9.330063 TCATAGTGTGGATGTTGATATCTTTTC 57.670 33.333 3.98 0.00 0.00 2.29
339 340 9.685276 TTCATAGTGTGGATGTTGATATCTTTT 57.315 29.630 3.98 0.00 0.00 2.27
340 341 9.685276 TTTCATAGTGTGGATGTTGATATCTTT 57.315 29.630 3.98 0.00 0.00 2.52
341 342 9.857656 ATTTCATAGTGTGGATGTTGATATCTT 57.142 29.630 3.98 0.00 0.00 2.40
342 343 9.499479 GATTTCATAGTGTGGATGTTGATATCT 57.501 33.333 3.98 0.00 0.00 1.98
343 344 9.276590 TGATTTCATAGTGTGGATGTTGATATC 57.723 33.333 0.00 0.00 0.00 1.63
344 345 9.631257 TTGATTTCATAGTGTGGATGTTGATAT 57.369 29.630 0.00 0.00 0.00 1.63
345 346 9.631257 ATTGATTTCATAGTGTGGATGTTGATA 57.369 29.630 0.00 0.00 0.00 2.15
346 347 7.943079 TTGATTTCATAGTGTGGATGTTGAT 57.057 32.000 0.00 0.00 0.00 2.57
347 348 7.943079 ATTGATTTCATAGTGTGGATGTTGA 57.057 32.000 0.00 0.00 0.00 3.18
473 474 7.039504 AGGCCGCATATAAGATTTGATCAAAAT 60.040 33.333 23.91 15.07 41.33 1.82
474 475 6.265196 AGGCCGCATATAAGATTTGATCAAAA 59.735 34.615 23.91 8.76 33.56 2.44
475 476 5.769662 AGGCCGCATATAAGATTTGATCAAA 59.230 36.000 22.52 22.52 34.46 2.69
476 477 5.316167 AGGCCGCATATAAGATTTGATCAA 58.684 37.500 3.38 3.38 0.00 2.57
477 478 4.910195 AGGCCGCATATAAGATTTGATCA 58.090 39.130 0.00 0.00 0.00 2.92
478 479 6.985188 TTAGGCCGCATATAAGATTTGATC 57.015 37.500 0.00 0.00 0.00 2.92
479 480 7.759489 TTTTAGGCCGCATATAAGATTTGAT 57.241 32.000 0.00 0.00 0.00 2.57
480 481 7.575414 TTTTTAGGCCGCATATAAGATTTGA 57.425 32.000 0.00 0.00 0.00 2.69
501 502 7.610580 TCAAATTGTACTCCCTCCAATTTTT 57.389 32.000 6.80 0.00 42.88 1.94
502 503 7.797121 ATCAAATTGTACTCCCTCCAATTTT 57.203 32.000 6.80 0.00 42.88 1.82
503 504 7.797121 AATCAAATTGTACTCCCTCCAATTT 57.203 32.000 0.00 0.00 45.02 1.82
504 505 8.917088 CATAATCAAATTGTACTCCCTCCAATT 58.083 33.333 0.00 0.00 39.72 2.32
505 506 7.506938 CCATAATCAAATTGTACTCCCTCCAAT 59.493 37.037 0.00 0.00 0.00 3.16
506 507 6.833416 CCATAATCAAATTGTACTCCCTCCAA 59.167 38.462 0.00 0.00 0.00 3.53
507 508 6.159575 TCCATAATCAAATTGTACTCCCTCCA 59.840 38.462 0.00 0.00 0.00 3.86
508 509 6.601332 TCCATAATCAAATTGTACTCCCTCC 58.399 40.000 0.00 0.00 0.00 4.30
509 510 7.939039 TGATCCATAATCAAATTGTACTCCCTC 59.061 37.037 0.00 0.00 41.49 4.30
510 511 7.721399 GTGATCCATAATCAAATTGTACTCCCT 59.279 37.037 0.00 0.00 45.88 4.20
511 512 7.307989 CGTGATCCATAATCAAATTGTACTCCC 60.308 40.741 0.00 0.00 45.88 4.30
512 513 7.441157 TCGTGATCCATAATCAAATTGTACTCC 59.559 37.037 0.00 0.00 45.88 3.85
513 514 8.365399 TCGTGATCCATAATCAAATTGTACTC 57.635 34.615 0.00 0.00 45.88 2.59
514 515 8.777413 CATCGTGATCCATAATCAAATTGTACT 58.223 33.333 0.00 0.00 45.88 2.73
515 516 7.535258 GCATCGTGATCCATAATCAAATTGTAC 59.465 37.037 0.00 0.00 45.88 2.90
516 517 7.571059 CGCATCGTGATCCATAATCAAATTGTA 60.571 37.037 0.00 0.00 45.88 2.41
517 518 6.441274 GCATCGTGATCCATAATCAAATTGT 58.559 36.000 0.00 0.00 45.88 2.71
518 519 5.566395 CGCATCGTGATCCATAATCAAATTG 59.434 40.000 0.00 0.00 45.88 2.32
519 520 5.469760 TCGCATCGTGATCCATAATCAAATT 59.530 36.000 0.00 0.00 45.88 1.82
520 521 4.996758 TCGCATCGTGATCCATAATCAAAT 59.003 37.500 0.00 0.00 45.88 2.32
521 522 4.376146 TCGCATCGTGATCCATAATCAAA 58.624 39.130 0.00 0.00 45.88 2.69
522 523 3.988819 TCGCATCGTGATCCATAATCAA 58.011 40.909 0.00 0.00 45.88 2.57
523 524 3.658757 TCGCATCGTGATCCATAATCA 57.341 42.857 0.00 0.00 42.21 2.57
524 525 4.667668 GCTTTCGCATCGTGATCCATAATC 60.668 45.833 0.00 0.00 35.78 1.75
525 526 3.187227 GCTTTCGCATCGTGATCCATAAT 59.813 43.478 0.00 0.00 35.78 1.28
526 527 2.543848 GCTTTCGCATCGTGATCCATAA 59.456 45.455 0.00 0.00 35.78 1.90
527 528 2.135139 GCTTTCGCATCGTGATCCATA 58.865 47.619 0.00 0.00 35.78 2.74
528 529 0.940126 GCTTTCGCATCGTGATCCAT 59.060 50.000 0.00 0.00 35.78 3.41
529 530 0.390998 TGCTTTCGCATCGTGATCCA 60.391 50.000 0.00 0.00 42.25 3.41
530 531 2.383170 TGCTTTCGCATCGTGATCC 58.617 52.632 0.00 0.00 42.25 3.36
541 542 2.796617 CTTGCGCGGTTGCTTTCG 60.797 61.111 8.83 0.00 39.65 3.46
542 543 2.429069 CCTTGCGCGGTTGCTTTC 60.429 61.111 8.83 0.00 39.65 2.62
543 544 2.677573 GAACCTTGCGCGGTTGCTTT 62.678 55.000 22.23 0.00 46.85 3.51
544 545 3.194272 GAACCTTGCGCGGTTGCTT 62.194 57.895 22.23 0.38 46.85 3.91
545 546 3.660111 GAACCTTGCGCGGTTGCT 61.660 61.111 22.23 0.74 46.85 3.91
546 547 4.700365 GGAACCTTGCGCGGTTGC 62.700 66.667 22.23 20.81 46.85 4.17
547 548 2.966309 GAGGAACCTTGCGCGGTTG 61.966 63.158 22.23 4.54 46.85 3.77
549 550 3.626924 AGAGGAACCTTGCGCGGT 61.627 61.111 8.83 0.95 39.48 5.68
550 551 3.121030 CAGAGGAACCTTGCGCGG 61.121 66.667 8.83 0.14 0.00 6.46
551 552 3.793144 GCAGAGGAACCTTGCGCG 61.793 66.667 0.00 0.00 0.00 6.86
552 553 3.793144 CGCAGAGGAACCTTGCGC 61.793 66.667 24.48 0.00 41.94 6.09
567 568 0.882484 GGCCATAAAGCTCTCCTCGC 60.882 60.000 0.00 0.00 0.00 5.03
570 571 2.416638 AGATGGCCATAAAGCTCTCCT 58.583 47.619 20.84 4.96 0.00 3.69
571 572 2.947127 AGATGGCCATAAAGCTCTCC 57.053 50.000 20.84 2.24 0.00 3.71
581 582 1.417145 GAGCAGAGAGAAGATGGCCAT 59.583 52.381 20.96 20.96 0.00 4.40
767 780 3.203412 CTCGAGGTCCGTCCGGAG 61.203 72.222 3.06 0.00 46.16 4.63
768 781 3.709633 TCTCGAGGTCCGTCCGGA 61.710 66.667 13.56 0.00 42.90 5.14
780 793 1.804730 CCGTCTCGTCTCGTCTCGA 60.805 63.158 0.00 0.00 34.88 4.04
782 795 2.400402 GCCGTCTCGTCTCGTCTC 59.600 66.667 0.00 0.00 0.00 3.36
783 796 3.488978 CGCCGTCTCGTCTCGTCT 61.489 66.667 0.00 0.00 0.00 4.18
873 922 0.553333 GGAAGGGAAGGGGATGGAAG 59.447 60.000 0.00 0.00 0.00 3.46
883 933 2.680370 CCGGGGAAGGGAAGGGAAG 61.680 68.421 0.00 0.00 0.00 3.46
884 934 2.612746 CCGGGGAAGGGAAGGGAA 60.613 66.667 0.00 0.00 0.00 3.97
888 938 2.723464 TTTTGGCCGGGGAAGGGAAG 62.723 60.000 2.18 0.00 0.00 3.46
889 939 2.313749 TTTTTGGCCGGGGAAGGGAA 62.314 55.000 2.18 0.00 0.00 3.97
890 940 2.780185 TTTTTGGCCGGGGAAGGGA 61.780 57.895 2.18 0.00 0.00 4.20
891 941 2.203714 TTTTTGGCCGGGGAAGGG 60.204 61.111 2.18 0.00 0.00 3.95
892 942 1.403687 TTGTTTTTGGCCGGGGAAGG 61.404 55.000 2.18 0.00 0.00 3.46
912 962 6.072948 AGGTTTGGTTTTTGTTACTTGTTTGC 60.073 34.615 0.00 0.00 0.00 3.68
1089 1139 1.595058 GGGGAGGAGGAAGAGGGAGA 61.595 65.000 0.00 0.00 0.00 3.71
1247 1297 1.901085 GTACTGGGAGGTCTGGCTG 59.099 63.158 0.00 0.00 0.00 4.85
1326 1376 1.406614 GGATCTGTTGCTGGTGAGGAG 60.407 57.143 0.00 0.00 0.00 3.69
1327 1377 0.615331 GGATCTGTTGCTGGTGAGGA 59.385 55.000 0.00 0.00 0.00 3.71
1330 1380 1.296392 CCGGATCTGTTGCTGGTGA 59.704 57.895 0.00 0.00 0.00 4.02
1331 1381 1.003355 ACCGGATCTGTTGCTGGTG 60.003 57.895 9.46 0.00 42.06 4.17
1332 1382 1.003355 CACCGGATCTGTTGCTGGT 60.003 57.895 9.46 0.00 44.43 4.00
1336 1401 1.078759 CGAGTCACCGGATCTGTTGC 61.079 60.000 9.46 0.00 0.00 4.17
1357 1431 1.732683 GGAATTTGTTGCACCGCCG 60.733 57.895 0.00 0.00 0.00 6.46
1454 1529 2.866085 ATCCTCGAGTGCAGCTTGGC 62.866 60.000 12.31 0.00 0.00 4.52
1458 1533 1.683707 TCCATCCTCGAGTGCAGCT 60.684 57.895 12.31 0.00 0.00 4.24
1472 1547 4.096003 CCGCCCGTCCTTGTCCAT 62.096 66.667 0.00 0.00 0.00 3.41
1621 1708 0.251519 AGAGGCAGGAAAAGGGCAAG 60.252 55.000 0.00 0.00 0.00 4.01
1645 1732 1.833630 TCATCTGAACGGAGGCATCTT 59.166 47.619 0.00 0.00 0.00 2.40
1656 1743 1.667724 CAGAATGCCGGTCATCTGAAC 59.332 52.381 20.88 8.34 34.83 3.18
1658 1745 1.194218 TCAGAATGCCGGTCATCTGA 58.806 50.000 22.85 22.85 37.19 3.27
1660 1747 1.833630 TCTTCAGAATGCCGGTCATCT 59.166 47.619 1.90 0.72 33.40 2.90
1668 1755 4.094590 CACTCATGTTCTCTTCAGAATGCC 59.905 45.833 0.00 0.00 40.88 4.40
1720 1807 3.119291 GACATGTCATACCTCTGCTTCG 58.881 50.000 21.07 0.00 0.00 3.79
1726 1813 5.441718 AATGTTGGACATGTCATACCTCT 57.558 39.130 26.47 8.76 37.97 3.69
1735 1822 5.981088 TTGCTCAATAATGTTGGACATGT 57.019 34.783 0.00 0.00 37.97 3.21
1739 1852 5.004726 GCGAAATTGCTCAATAATGTTGGAC 59.995 40.000 0.00 0.00 0.00 4.02
1777 1891 4.792704 GCACAACTTGGTGGAAACATGTAG 60.793 45.833 0.00 0.00 46.14 2.74
1881 1995 7.997482 TCTTGTATGTCTGACTACAACCTATC 58.003 38.462 19.55 0.00 34.88 2.08
1882 1996 7.956328 TCTTGTATGTCTGACTACAACCTAT 57.044 36.000 19.55 4.35 34.88 2.57
1991 2108 5.545658 AGGTTTGTAATAACATGTCGCAG 57.454 39.130 0.00 0.00 34.97 5.18
2121 2238 4.566488 GGGATATGAATAACAGGGCAGAGG 60.566 50.000 0.00 0.00 0.00 3.69
2164 2281 4.514401 ACATCAGGGAAAATAGGAACGTC 58.486 43.478 0.00 0.00 0.00 4.34
2257 2374 1.428869 ACCAGGAGAACAGCAGAAGT 58.571 50.000 0.00 0.00 0.00 3.01
2607 2728 5.391416 GCTTCCTAACTTTGAGTCAATCTGC 60.391 44.000 6.36 0.00 0.00 4.26
2703 2824 1.579964 TTGCTTCATGCCTCAGTGCG 61.580 55.000 0.00 0.00 42.00 5.34
2932 3074 2.443016 CCCCCTCTCCCTGTCTCG 60.443 72.222 0.00 0.00 0.00 4.04
2937 3079 3.368501 TCCCTCCCCCTCTCCCTG 61.369 72.222 0.00 0.00 0.00 4.45
2938 3080 3.039526 CTCCCTCCCCCTCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
3030 3181 6.011122 AGATGGAAGTAAGGATGAAGCAAT 57.989 37.500 0.00 0.00 0.00 3.56
3037 3188 6.439636 TGGGATTAGATGGAAGTAAGGATG 57.560 41.667 0.00 0.00 0.00 3.51
3103 3410 4.898829 TCATCCACAAATATGCCGAAAG 57.101 40.909 0.00 0.00 0.00 2.62
3121 3428 3.684788 GTCACCGTTTGCTGTCTTATCAT 59.315 43.478 0.00 0.00 0.00 2.45
3123 3430 2.415512 GGTCACCGTTTGCTGTCTTATC 59.584 50.000 0.00 0.00 0.00 1.75
3224 3545 5.302568 ACAAATGCAAACTTCTCTTCCATGA 59.697 36.000 0.00 0.00 0.00 3.07
3228 3549 5.591099 TGAACAAATGCAAACTTCTCTTCC 58.409 37.500 0.00 0.00 0.00 3.46
3229 3550 7.704789 AATGAACAAATGCAAACTTCTCTTC 57.295 32.000 0.00 0.00 0.00 2.87
3584 4195 5.244785 AGAGTGCATCATATTTTGCTGTG 57.755 39.130 7.85 0.00 39.60 3.66
3655 4272 4.517075 TCATTTATGACGAAACAACAGCCA 59.483 37.500 0.00 0.00 0.00 4.75
3656 4273 5.041951 TCATTTATGACGAAACAACAGCC 57.958 39.130 0.00 0.00 0.00 4.85
3787 4404 8.946085 TGAAAGGCTTTATTGTTGTACTGATAG 58.054 33.333 13.37 0.00 0.00 2.08
3788 4405 8.856153 TGAAAGGCTTTATTGTTGTACTGATA 57.144 30.769 13.37 0.00 0.00 2.15
3791 4408 6.970484 ACTGAAAGGCTTTATTGTTGTACTG 58.030 36.000 13.37 3.97 39.30 2.74
3802 4419 1.271926 GCTGGGGACTGAAAGGCTTTA 60.272 52.381 13.37 1.00 46.21 1.85
3906 4523 8.466798 GCAATACTAACTGTGGGTATTCAAAAT 58.533 33.333 12.55 0.00 34.99 1.82
3991 4609 4.890088 AGCATCAGCACATGTTTGAAAAT 58.110 34.783 12.43 1.44 45.49 1.82
4018 4636 4.045636 ACTGTGCAGGAAAAATGTGAAC 57.954 40.909 4.11 0.00 0.00 3.18
4024 4642 5.163426 TGACATCAAACTGTGCAGGAAAAAT 60.163 36.000 4.11 0.00 0.00 1.82
4031 4649 2.163010 GGGATGACATCAAACTGTGCAG 59.837 50.000 17.08 0.00 0.00 4.41
4099 4717 2.467880 TCTTCTTGCTCCTTCCGGTAT 58.532 47.619 0.00 0.00 0.00 2.73
4125 4743 2.164338 GGGCTGATTTTTACCGTTCCA 58.836 47.619 0.00 0.00 0.00 3.53
4131 4749 2.100197 GTCCAGGGGCTGATTTTTACC 58.900 52.381 0.00 0.00 32.44 2.85
4194 4812 3.828451 TCTTGGATTTCTTCTTTGCCTGG 59.172 43.478 0.00 0.00 0.00 4.45
4227 4845 2.354704 CGGAGGGTCTTGTCTTGCAATA 60.355 50.000 0.00 0.00 36.36 1.90
4257 4875 3.636231 CGCCCCCTCCTGTTGTCA 61.636 66.667 0.00 0.00 0.00 3.58
4281 4899 4.716003 TCGAGAGAGAGTTCGGCA 57.284 55.556 0.00 0.00 37.42 5.69
4344 4962 1.996786 AAGCTTCCATTGCCGCATCG 61.997 55.000 0.00 0.00 0.00 3.84
4347 4965 1.303561 AGAAGCTTCCATTGCCGCA 60.304 52.632 22.81 0.00 0.00 5.69
4446 5064 0.100325 CGAAGCTGCTCTCAGACGAT 59.900 55.000 1.00 0.00 42.95 3.73
4450 5068 1.821136 TGAATCGAAGCTGCTCTCAGA 59.179 47.619 1.00 0.56 42.95 3.27
4635 5253 1.021390 CCCAGTTGGACGATCTGTGC 61.021 60.000 0.00 0.00 39.78 4.57
4712 5330 5.502079 TGTTGTTAAGAAACCCTTCAGACA 58.498 37.500 0.00 0.00 36.34 3.41
4740 5358 6.440010 AGATGAGCACATATAACTAGCCTGAT 59.560 38.462 0.00 0.00 36.82 2.90
4744 5362 5.866633 GTCAGATGAGCACATATAACTAGCC 59.133 44.000 0.00 0.00 36.82 3.93
4774 5392 2.749621 CGCAGCTTCTTCCTACCATTTT 59.250 45.455 0.00 0.00 0.00 1.82
4809 5427 1.073964 CCATATGCAGCGATTCTCCG 58.926 55.000 0.00 0.00 0.00 4.63
5036 5658 4.860907 GGTACGTAACGAACACAAGATGAT 59.139 41.667 0.00 0.00 0.00 2.45
5039 5661 4.022935 TCTGGTACGTAACGAACACAAGAT 60.023 41.667 6.07 0.00 0.00 2.40
5053 5675 3.083122 ACCACTGATAGTCTGGTACGT 57.917 47.619 0.00 0.00 0.00 3.57
5070 5692 1.262417 TCTGTCAATCTGCCGTACCA 58.738 50.000 0.00 0.00 0.00 3.25
5074 5696 2.111384 AGGTATCTGTCAATCTGCCGT 58.889 47.619 0.00 0.00 0.00 5.68
5078 5700 5.053145 GCAGGTAAGGTATCTGTCAATCTG 58.947 45.833 0.00 0.00 39.14 2.90
5085 5707 3.181465 CGATTGGCAGGTAAGGTATCTGT 60.181 47.826 0.00 0.00 39.14 3.41
5113 5743 7.547227 TGGTAGATCACATCATATAATCACCG 58.453 38.462 0.00 0.00 0.00 4.94
5201 5831 1.891150 ACTCTTTGCTTGCTGGAATGG 59.109 47.619 0.00 0.00 0.00 3.16
5220 5850 5.689383 TGAGTTTAGGAATTTGTGCTCAC 57.311 39.130 0.00 0.00 0.00 3.51
5222 5852 6.259550 ACATGAGTTTAGGAATTTGTGCTC 57.740 37.500 0.00 0.00 0.00 4.26
5223 5853 7.665559 TCTTACATGAGTTTAGGAATTTGTGCT 59.334 33.333 0.00 0.00 0.00 4.40
5224 5854 7.816640 TCTTACATGAGTTTAGGAATTTGTGC 58.183 34.615 0.00 0.00 0.00 4.57
5274 5918 6.661805 TGTAACTTTGTGGGTTTCTCTCTTTT 59.338 34.615 0.00 0.00 0.00 2.27
5276 5920 5.751586 TGTAACTTTGTGGGTTTCTCTCTT 58.248 37.500 0.00 0.00 0.00 2.85
5447 6107 5.761205 TGAAGTAGAAGCTACATCCTCTCT 58.239 41.667 7.29 0.00 0.00 3.10
5450 6110 5.967088 TGTTGAAGTAGAAGCTACATCCTC 58.033 41.667 7.29 2.39 0.00 3.71
5603 6267 4.698780 CCCTTTACCTGTTTACTTACTGGC 59.301 45.833 0.00 0.00 39.87 4.85
5643 6307 2.706723 TGGGGACAACAGCAAGTAGTTA 59.293 45.455 0.00 0.00 37.44 2.24
5695 6360 4.678509 TCATTTCGCGCTATGTTTCTTT 57.321 36.364 5.56 0.00 0.00 2.52
5777 6442 5.337169 GCCTGATCTATATTCTGACCAGTCC 60.337 48.000 0.00 0.00 0.00 3.85
5792 6457 3.118000 TGAGAGTTACGAGGCCTGATCTA 60.118 47.826 12.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.