Multiple sequence alignment - TraesCS4B01G252400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G252400 chr4B 100.000 8898 0 0 1 8898 518156450 518147553 0.000000e+00 16432.0
1 TraesCS4B01G252400 chr4B 95.025 201 5 5 5198 5397 106047817 106047621 2.410000e-80 311.0
2 TraesCS4B01G252400 chr4A 95.786 5078 157 28 150 5209 42777003 42782041 0.000000e+00 8139.0
3 TraesCS4B01G252400 chr4A 95.665 1684 54 8 6431 8097 42783049 42784730 0.000000e+00 2687.0
4 TraesCS4B01G252400 chr4A 97.093 1032 29 1 5374 6405 42782025 42783055 0.000000e+00 1738.0
5 TraesCS4B01G252400 chr4A 91.680 625 30 12 8280 8898 42785143 42785751 0.000000e+00 846.0
6 TraesCS4B01G252400 chr4A 90.476 126 9 3 30 154 42772847 42772970 7.150000e-36 163.0
7 TraesCS4B01G252400 chr4D 96.491 2793 73 11 5374 8146 421335158 421332371 0.000000e+00 4591.0
8 TraesCS4B01G252400 chr4D 93.678 2847 121 21 860 3664 421339779 421336950 0.000000e+00 4205.0
9 TraesCS4B01G252400 chr4D 96.286 1427 39 6 3702 5116 421336953 421335529 0.000000e+00 2329.0
10 TraesCS4B01G252400 chr4D 93.573 778 45 3 86 863 421340702 421339930 0.000000e+00 1155.0
11 TraesCS4B01G252400 chr4D 91.627 633 33 12 8268 8898 421332346 421331732 0.000000e+00 857.0
12 TraesCS4B01G252400 chr4D 100.000 29 0 0 1420 1448 421339248 421339220 4.000000e-03 54.7
13 TraesCS4B01G252400 chr2A 85.258 407 46 7 7703 8108 666558786 666559179 2.990000e-109 407.0
14 TraesCS4B01G252400 chr2A 97.765 179 4 0 5196 5374 116445905 116446083 8.680000e-80 309.0
15 TraesCS4B01G252400 chr7B 96.335 191 3 3 5195 5382 695107079 695107268 2.410000e-80 311.0
16 TraesCS4B01G252400 chr7B 95.812 191 4 3 5187 5374 220990599 220990788 1.120000e-78 305.0
17 TraesCS4B01G252400 chr7B 96.907 97 3 0 8140 8236 39913930 39914026 7.150000e-36 163.0
18 TraesCS4B01G252400 chr7B 94.949 99 4 1 8133 8230 412543664 412543762 4.300000e-33 154.0
19 TraesCS4B01G252400 chr6A 98.305 177 3 0 5198 5374 582491066 582491242 2.410000e-80 311.0
20 TraesCS4B01G252400 chr6B 97.778 180 2 2 5203 5381 460493642 460493464 8.680000e-80 309.0
21 TraesCS4B01G252400 chr7D 97.253 182 1 3 5193 5374 426750092 426750269 1.120000e-78 305.0
22 TraesCS4B01G252400 chr7D 97.872 94 1 1 8137 8230 481573845 481573753 2.570000e-35 161.0
23 TraesCS4B01G252400 chr6D 95.833 192 3 5 5193 5382 59423464 59423652 1.120000e-78 305.0
24 TraesCS4B01G252400 chr6D 94.118 102 5 1 8132 8232 437180651 437180550 4.300000e-33 154.0
25 TraesCS4B01G252400 chr5A 100.000 165 0 0 5210 5374 333417172 333417008 1.120000e-78 305.0
26 TraesCS4B01G252400 chr5A 84.426 122 13 3 590 706 380223844 380223964 2.030000e-21 115.0
27 TraesCS4B01G252400 chr2B 84.585 253 39 0 7659 7911 614906170 614906422 1.480000e-62 252.0
28 TraesCS4B01G252400 chr1B 98.936 94 1 0 8139 8232 26838048 26838141 1.540000e-37 169.0
29 TraesCS4B01G252400 chr1B 94.949 99 4 1 8137 8235 230031798 230031895 4.300000e-33 154.0
30 TraesCS4B01G252400 chr2D 98.901 91 1 0 8139 8229 22958482 22958392 7.150000e-36 163.0
31 TraesCS4B01G252400 chr5D 79.283 251 34 7 473 706 287806766 287807015 9.250000e-35 159.0
32 TraesCS4B01G252400 chr1D 98.824 85 1 0 8145 8229 16084854 16084938 1.550000e-32 152.0
33 TraesCS4B01G252400 chr1D 98.824 85 1 0 8145 8229 16086809 16086893 1.550000e-32 152.0
34 TraesCS4B01G252400 chr7A 81.000 100 19 0 746 845 99648528 99648627 7.410000e-11 80.5
35 TraesCS4B01G252400 chr3B 95.122 41 2 0 679 719 54759899 54759939 2.070000e-06 65.8
36 TraesCS4B01G252400 chr3D 90.476 42 2 2 679 719 85441018 85440978 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G252400 chr4B 518147553 518156450 8897 True 16432.000000 16432 100.000000 1 8898 1 chr4B.!!$R2 8897
1 TraesCS4B01G252400 chr4A 42777003 42785751 8748 False 3352.500000 8139 95.056000 150 8898 4 chr4A.!!$F2 8748
2 TraesCS4B01G252400 chr4D 421331732 421340702 8970 True 2198.616667 4591 95.275833 86 8898 6 chr4D.!!$R1 8812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.258774 TTCTTATCCTTGCTGGGCCC 59.741 55.0 17.59 17.59 36.20 5.80 F
970 1127 0.849540 ACCCAAAACCCCCTCCCTAG 60.850 60.0 0.00 0.00 0.00 3.02 F
2896 3095 0.242825 CAGCAGCATGTCAGGGTTTG 59.757 55.0 0.00 0.00 39.31 2.93 F
2905 3104 0.891904 GTCAGGGTTTGGCGGCTTAA 60.892 55.0 11.43 1.34 0.00 1.85 F
4520 4733 0.977395 GATCCATCCCCTAGTTCCCG 59.023 60.0 0.00 0.00 0.00 5.14 F
5248 5764 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.0 0.00 0.00 34.10 3.16 F
5293 5809 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.0 7.38 0.00 33.79 3.16 F
5336 5852 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.0 0.00 0.00 0.00 4.95 F
5355 5871 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.0 0.00 0.00 41.52 2.85 F
5365 5881 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.0 0.00 0.00 34.99 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1379 1536 0.588252 GCGCACCAGCCATTATACTG 59.412 55.000 0.3 0.0 37.52 2.74 R
2905 3104 1.132262 CAACACCAAACTCGCACTGTT 59.868 47.619 0.0 0.0 0.00 3.16 R
4786 5000 1.134401 ACCGCAATATGTCCTGAGGTG 60.134 52.381 0.0 0.0 43.17 4.00 R
5194 5710 2.169561 TGCCCTCACGAATGCTAATACA 59.830 45.455 0.0 0.0 0.00 2.29 R
5346 5862 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.0 0.0 34.99 4.30 R
6738 7275 1.142465 AGGCAGATCAATAGCAGGTGG 59.858 52.381 0.0 0.0 0.00 4.61 R
6839 7376 1.479323 TCGCCTTGTCCACCTGTATAC 59.521 52.381 0.0 0.0 0.00 1.47 R
7598 8136 1.813513 ACACACTAGACAATGGCTGC 58.186 50.000 0.0 0.0 0.00 5.25 R
7837 8375 3.100111 CCCTTCCCCTCCTTTGGG 58.900 66.667 0.0 0.0 46.68 4.12 R
7939 8477 2.644798 AGGCATCTGGGTTCTACAGTTT 59.355 45.455 0.0 0.0 37.25 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.813750 GTAGTGGAGCTTAGGGTTTACA 57.186 45.455 0.00 0.00 0.00 2.41
22 23 3.983044 AGTGGAGCTTAGGGTTTACAG 57.017 47.619 0.00 0.00 0.00 2.74
23 24 2.572104 AGTGGAGCTTAGGGTTTACAGG 59.428 50.000 0.00 0.00 0.00 4.00
24 25 2.305052 GTGGAGCTTAGGGTTTACAGGT 59.695 50.000 0.00 0.00 0.00 4.00
25 26 3.516700 GTGGAGCTTAGGGTTTACAGGTA 59.483 47.826 0.00 0.00 0.00 3.08
26 27 3.773119 TGGAGCTTAGGGTTTACAGGTAG 59.227 47.826 0.00 0.00 0.00 3.18
27 28 3.773667 GGAGCTTAGGGTTTACAGGTAGT 59.226 47.826 0.00 0.00 0.00 2.73
28 29 4.382793 GGAGCTTAGGGTTTACAGGTAGTG 60.383 50.000 0.00 0.00 0.00 2.74
29 30 3.518303 AGCTTAGGGTTTACAGGTAGTGG 59.482 47.826 0.00 0.00 0.00 4.00
30 31 3.516700 GCTTAGGGTTTACAGGTAGTGGA 59.483 47.826 0.00 0.00 0.00 4.02
31 32 4.382793 GCTTAGGGTTTACAGGTAGTGGAG 60.383 50.000 0.00 0.00 0.00 3.86
32 33 1.907255 AGGGTTTACAGGTAGTGGAGC 59.093 52.381 0.00 0.00 0.00 4.70
33 34 1.626825 GGGTTTACAGGTAGTGGAGCA 59.373 52.381 0.00 0.00 0.00 4.26
34 35 2.039348 GGGTTTACAGGTAGTGGAGCAA 59.961 50.000 0.00 0.00 0.00 3.91
35 36 3.335579 GGTTTACAGGTAGTGGAGCAAG 58.664 50.000 0.00 0.00 0.00 4.01
36 37 3.007614 GGTTTACAGGTAGTGGAGCAAGA 59.992 47.826 0.00 0.00 0.00 3.02
37 38 3.955650 TTACAGGTAGTGGAGCAAGAC 57.044 47.619 0.00 0.00 0.00 3.01
38 39 1.717032 ACAGGTAGTGGAGCAAGACA 58.283 50.000 0.00 0.00 0.00 3.41
39 40 1.344763 ACAGGTAGTGGAGCAAGACAC 59.655 52.381 0.00 0.00 37.86 3.67
40 41 0.977395 AGGTAGTGGAGCAAGACACC 59.023 55.000 0.00 0.00 38.34 4.16
41 42 0.685097 GGTAGTGGAGCAAGACACCA 59.315 55.000 0.00 0.00 38.34 4.17
42 43 1.071699 GGTAGTGGAGCAAGACACCAA 59.928 52.381 0.00 0.00 41.06 3.67
43 44 2.486548 GGTAGTGGAGCAAGACACCAAA 60.487 50.000 0.00 0.00 41.06 3.28
44 45 2.435372 AGTGGAGCAAGACACCAAAA 57.565 45.000 0.00 0.00 41.06 2.44
45 46 2.949447 AGTGGAGCAAGACACCAAAAT 58.051 42.857 0.00 0.00 41.06 1.82
46 47 2.624838 AGTGGAGCAAGACACCAAAATG 59.375 45.455 0.00 0.00 41.06 2.32
47 48 2.362077 GTGGAGCAAGACACCAAAATGT 59.638 45.455 0.00 0.00 41.06 2.71
55 56 3.982576 GACACCAAAATGTCGGTTCTT 57.017 42.857 0.00 0.00 39.69 2.52
57 58 5.622770 GACACCAAAATGTCGGTTCTTAT 57.377 39.130 0.00 0.00 39.69 1.73
58 59 5.622770 ACACCAAAATGTCGGTTCTTATC 57.377 39.130 0.00 0.00 31.41 1.75
59 60 4.457949 ACACCAAAATGTCGGTTCTTATCC 59.542 41.667 0.00 0.00 31.41 2.59
60 61 4.700213 CACCAAAATGTCGGTTCTTATCCT 59.300 41.667 0.00 0.00 31.41 3.24
61 62 5.183140 CACCAAAATGTCGGTTCTTATCCTT 59.817 40.000 0.00 0.00 31.41 3.36
62 63 5.183140 ACCAAAATGTCGGTTCTTATCCTTG 59.817 40.000 0.00 0.00 28.43 3.61
63 64 4.965119 AAATGTCGGTTCTTATCCTTGC 57.035 40.909 0.00 0.00 0.00 4.01
64 65 3.914426 ATGTCGGTTCTTATCCTTGCT 57.086 42.857 0.00 0.00 0.00 3.91
65 66 2.972625 TGTCGGTTCTTATCCTTGCTG 58.027 47.619 0.00 0.00 0.00 4.41
66 67 2.280628 GTCGGTTCTTATCCTTGCTGG 58.719 52.381 0.00 0.00 37.10 4.85
67 68 1.209504 TCGGTTCTTATCCTTGCTGGG 59.790 52.381 0.00 0.00 36.20 4.45
68 69 1.393603 GGTTCTTATCCTTGCTGGGC 58.606 55.000 0.00 0.00 36.20 5.36
69 70 1.393603 GTTCTTATCCTTGCTGGGCC 58.606 55.000 0.00 0.00 36.20 5.80
70 71 0.258774 TTCTTATCCTTGCTGGGCCC 59.741 55.000 17.59 17.59 36.20 5.80
71 72 1.152673 CTTATCCTTGCTGGGCCCC 60.153 63.158 22.27 4.91 36.20 5.80
72 73 2.965716 CTTATCCTTGCTGGGCCCCG 62.966 65.000 22.27 15.62 36.20 5.73
111 112 3.827634 GCTTTATCCAGCCCGGTG 58.172 61.111 0.00 0.00 33.21 4.94
140 141 2.123428 GGGTCATGGCTGCATCACC 61.123 63.158 0.50 1.31 0.00 4.02
151 152 2.415090 GCTGCATCACCTAGTTGCTTTG 60.415 50.000 0.00 0.00 42.23 2.77
160 161 6.123651 TCACCTAGTTGCTTTGGAAAAACTA 58.876 36.000 0.00 0.00 34.76 2.24
190 191 8.885494 TGAATTCAAAAGGTTGGATTAAACAG 57.115 30.769 5.45 0.00 42.12 3.16
258 259 5.449862 GCATTTATACAAATCGAGCAACCCA 60.450 40.000 0.00 0.00 31.82 4.51
368 369 6.547880 GGAGGATTAGAGTGTCATCTCAACTA 59.452 42.308 5.57 0.00 36.97 2.24
454 455 8.166422 ACAATTCTACAAAGAGTTTTAGTGGG 57.834 34.615 0.00 0.00 29.83 4.61
484 487 8.214721 TCTTTCTTTCCAAAATACTCCCTCTA 57.785 34.615 0.00 0.00 0.00 2.43
491 494 8.807948 TTCCAAAATACTCCCTCTATTTCAAG 57.192 34.615 0.00 0.00 0.00 3.02
687 690 9.793259 ATGAAGTTTGACTTAGAACAATCCTAA 57.207 29.630 0.00 0.00 38.80 2.69
963 1120 4.960866 ACGCGACCCAAAACCCCC 62.961 66.667 15.93 0.00 0.00 5.40
970 1127 0.849540 ACCCAAAACCCCCTCCCTAG 60.850 60.000 0.00 0.00 0.00 3.02
1458 1639 2.895372 GTACCGCGGGAATGCAGG 60.895 66.667 31.76 0.00 35.56 4.85
1476 1657 4.191544 GCAGGTGCACAGACTTCAATATA 58.808 43.478 20.43 0.00 41.59 0.86
1566 1753 0.887387 GTACCTTTTGCTGCCCGACA 60.887 55.000 0.00 0.00 0.00 4.35
1936 2123 8.679100 TGACTTCTATTCTAGAGTTCTAAGCAC 58.321 37.037 0.00 0.00 35.96 4.40
1967 2154 8.809468 ACATATATAGAGCTGATTACGAAGGA 57.191 34.615 0.00 0.00 0.00 3.36
2020 2208 3.189495 GCAAGCTTCTTTGTACCTTCTCC 59.811 47.826 0.00 0.00 0.00 3.71
2197 2386 2.158475 ACAGGATGAAAAGGAGTTGGCA 60.158 45.455 0.00 0.00 39.69 4.92
2398 2587 7.742556 TGTTCAATCTGATGTGTGTTTATCA 57.257 32.000 0.00 0.00 32.75 2.15
2421 2610 5.447624 AGTTACTGCTAAAAATTGCGGTT 57.552 34.783 5.39 0.00 45.31 4.44
2427 2616 5.582665 ACTGCTAAAAATTGCGGTTGAAAAA 59.417 32.000 0.00 0.00 45.31 1.94
2679 2868 1.970640 ACATTTCCTTTCTGGCAACCC 59.029 47.619 0.00 0.00 35.26 4.11
2680 2869 1.969923 CATTTCCTTTCTGGCAACCCA 59.030 47.619 0.00 0.00 39.32 4.51
2862 3060 2.609459 CCACAGCGGTTCTCATGTAATC 59.391 50.000 0.00 0.00 0.00 1.75
2896 3095 0.242825 CAGCAGCATGTCAGGGTTTG 59.757 55.000 0.00 0.00 39.31 2.93
2904 3103 1.302993 GTCAGGGTTTGGCGGCTTA 60.303 57.895 11.43 0.00 0.00 3.09
2905 3104 0.891904 GTCAGGGTTTGGCGGCTTAA 60.892 55.000 11.43 1.34 0.00 1.85
2977 3176 5.063880 GGACTTTGTCACCTGATGTAGTTT 58.936 41.667 0.07 0.00 33.68 2.66
2993 3192 2.562296 AGTTTCTGGCAATCTCCCCTA 58.438 47.619 0.00 0.00 0.00 3.53
3061 3260 1.941999 GCACTTGAAGCCTGGCCATC 61.942 60.000 16.57 14.78 0.00 3.51
3111 3311 6.760440 AGATGGGATCTCAACTATGACATT 57.240 37.500 3.04 0.00 33.42 2.71
3523 3725 9.434420 CCAAATGACACCAAACAAACAATATAT 57.566 29.630 0.00 0.00 0.00 0.86
3561 3763 8.056400 TGCCTTATTAGGGTATGTTTGTATGTT 58.944 33.333 0.00 0.00 42.25 2.71
3585 3787 3.132863 CCTGCTGCTTGGCATTTTC 57.867 52.632 0.00 0.00 41.63 2.29
3644 3846 7.946381 TTCTACTGGATAGATATGGCTGTAG 57.054 40.000 0.00 0.00 39.75 2.74
3783 3985 6.025280 TGTTCTTTTGTTTACTCGAAACTGC 58.975 36.000 0.60 0.00 46.53 4.40
3829 4031 2.171840 TGCTCCAGTCTCTTAGTCCAC 58.828 52.381 0.00 0.00 0.00 4.02
3916 4127 9.935241 TTTAGCATTGCCTATTATTTTGTTTCA 57.065 25.926 4.70 0.00 0.00 2.69
4088 4299 5.971895 TTTTTGCAGCTTCTTCAAACATC 57.028 34.783 0.00 0.00 30.45 3.06
4089 4300 4.652421 TTTGCAGCTTCTTCAAACATCA 57.348 36.364 0.00 0.00 0.00 3.07
4090 4301 4.859304 TTGCAGCTTCTTCAAACATCAT 57.141 36.364 0.00 0.00 0.00 2.45
4091 4302 4.168922 TGCAGCTTCTTCAAACATCATG 57.831 40.909 0.00 0.00 0.00 3.07
4155 4366 8.696374 TGATTTCTTCTTATCGTCATAAGGAGT 58.304 33.333 10.47 0.00 44.37 3.85
4504 4717 7.701924 TCACAGTTGAAACAATTTTGACAGATC 59.298 33.333 0.00 0.00 0.00 2.75
4514 4727 4.778213 TTTTGACAGATCCATCCCCTAG 57.222 45.455 0.00 0.00 0.00 3.02
4520 4733 0.977395 GATCCATCCCCTAGTTCCCG 59.023 60.000 0.00 0.00 0.00 5.14
4533 4746 2.317040 AGTTCCCGAAAGTGAGAGACA 58.683 47.619 0.00 0.00 0.00 3.41
4786 5000 3.511699 TGTGACGATCTCTTGTACATGC 58.488 45.455 0.00 0.00 0.00 4.06
4941 5155 4.650734 TGTTTCCACATCAACTGATAGCA 58.349 39.130 0.00 0.00 32.63 3.49
5117 5331 9.826574 AATACATCACGTTTTACCATATGTAGT 57.173 29.630 1.24 0.00 33.33 2.73
5118 5332 9.826574 ATACATCACGTTTTACCATATGTAGTT 57.173 29.630 1.24 0.00 33.33 2.24
5120 5334 9.826574 ACATCACGTTTTACCATATGTAGTTAT 57.173 29.630 1.24 0.00 0.00 1.89
5122 5336 9.826574 ATCACGTTTTACCATATGTAGTTATGT 57.173 29.630 1.24 0.00 0.00 2.29
5187 5703 7.924412 GCACAAGTTAGCACACCTATATTAGTA 59.076 37.037 0.00 0.00 0.00 1.82
5214 5730 2.833794 TGTATTAGCATTCGTGAGGGC 58.166 47.619 0.00 0.00 0.00 5.19
5215 5731 2.169561 TGTATTAGCATTCGTGAGGGCA 59.830 45.455 0.00 0.00 0.00 5.36
5216 5732 1.959042 ATTAGCATTCGTGAGGGCAG 58.041 50.000 0.00 0.00 0.00 4.85
5217 5733 0.107703 TTAGCATTCGTGAGGGCAGG 60.108 55.000 0.00 0.00 0.00 4.85
5218 5734 2.593468 TAGCATTCGTGAGGGCAGGC 62.593 60.000 0.00 0.00 0.00 4.85
5219 5735 2.825836 CATTCGTGAGGGCAGGCC 60.826 66.667 4.33 4.33 0.00 5.19
5220 5736 3.011517 ATTCGTGAGGGCAGGCCT 61.012 61.111 17.36 17.36 36.10 5.19
5221 5737 3.335356 ATTCGTGAGGGCAGGCCTG 62.335 63.158 29.34 29.34 36.10 4.85
5235 5751 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
5236 5752 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
5237 5753 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
5238 5754 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
5239 5755 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
5240 5756 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
5241 5757 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
5242 5758 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
5243 5759 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
5244 5760 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
5245 5761 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
5246 5762 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
5247 5763 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
5248 5764 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
5249 5765 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
5250 5766 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
5251 5767 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
5252 5768 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
5253 5769 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
5254 5770 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
5255 5771 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
5256 5772 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
5257 5773 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
5258 5774 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
5259 5775 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
5260 5776 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
5261 5777 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
5262 5778 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
5263 5779 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
5264 5780 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
5265 5781 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
5266 5782 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
5267 5783 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
5268 5784 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
5269 5785 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
5270 5786 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
5271 5787 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
5272 5788 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
5283 5799 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
5284 5800 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
5285 5801 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
5286 5802 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
5287 5803 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
5288 5804 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
5289 5805 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
5290 5806 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
5291 5807 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
5292 5808 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
5293 5809 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
5294 5810 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
5295 5811 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
5296 5812 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
5306 5822 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
5307 5823 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
5308 5824 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
5309 5825 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
5310 5826 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
5311 5827 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
5312 5828 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
5313 5829 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
5314 5830 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
5315 5831 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
5316 5832 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
5317 5833 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
5318 5834 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
5319 5835 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
5320 5836 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
5321 5837 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
5322 5838 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
5323 5839 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
5324 5840 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
5325 5841 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
5326 5842 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
5327 5843 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
5328 5844 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
5329 5845 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
5330 5846 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
5331 5847 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
5332 5848 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
5333 5849 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
5334 5850 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
5335 5851 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
5336 5852 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
5337 5853 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
5338 5854 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
5340 5856 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
5341 5857 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
5342 5858 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
5343 5859 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
5344 5860 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
5345 5861 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
5346 5862 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
5353 5869 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
5354 5870 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
5355 5871 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
5356 5872 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
5357 5873 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
5358 5874 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
5359 5875 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
5360 5876 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
5361 5877 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
5362 5878 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
5363 5879 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
5364 5880 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
5365 5881 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
5366 5882 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
5367 5883 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
5368 5884 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
5369 5885 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
5370 5886 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
5371 5887 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
5372 5888 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
5449 5965 6.283694 TGTGGCTTTGTAGCTCATAGATAAG 58.716 40.000 0.00 0.00 46.90 1.73
5524 6040 8.513774 TCTACTATGTGTGTACGTCAAATTGTA 58.486 33.333 0.00 11.50 0.00 2.41
5531 6047 6.352547 GTGTGTACGTCAAATTGTAAAGAACG 59.647 38.462 0.00 1.92 0.00 3.95
5584 6100 4.618920 TGTCTTCTCCCTCCTTTTGTAC 57.381 45.455 0.00 0.00 0.00 2.90
5585 6101 3.971305 TGTCTTCTCCCTCCTTTTGTACA 59.029 43.478 0.00 0.00 0.00 2.90
5610 6126 9.282569 CAATTTGTCCATTTTTCTGGGAAATTA 57.717 29.630 10.65 0.00 37.03 1.40
5661 6177 2.427812 GGACAGGTTGAGTAGGAGTAGC 59.572 54.545 0.00 0.00 0.00 3.58
5745 6261 1.730547 GTGCGCATGGTTGTCTTGC 60.731 57.895 15.91 0.00 41.47 4.01
5985 6501 4.806330 CTGTTAGGTACTTCTTCTTGCGA 58.194 43.478 0.00 0.00 41.75 5.10
6078 6594 7.403312 TGCTAACACAATTGGTATTTATGCT 57.597 32.000 10.83 0.00 0.00 3.79
6080 6596 8.961634 TGCTAACACAATTGGTATTTATGCTTA 58.038 29.630 10.83 0.00 0.00 3.09
6125 6641 4.782019 TTGGCTTATGCTTTAGTTGGTG 57.218 40.909 0.13 0.00 39.59 4.17
6253 6769 3.332034 AGCTTTTGATTCAATTGCTGCC 58.668 40.909 19.21 0.00 33.57 4.85
6432 6948 9.159364 GACAGTAAACGGTCTAAATAGGAAAAT 57.841 33.333 6.20 0.00 37.92 1.82
6500 7020 9.899226 GCTTGAAACCCTTTATATGTAATGATC 57.101 33.333 0.00 0.00 0.00 2.92
6620 7150 7.750655 TCTCTTCTTGGAGCTATAGATAGTGA 58.249 38.462 3.21 0.00 33.70 3.41
6640 7170 5.242171 AGTGATTGCTGAATTGACATGTGAA 59.758 36.000 1.15 0.00 0.00 3.18
6673 7204 0.319383 CGCTTCAGACACTGTCAGCT 60.319 55.000 11.80 0.00 37.02 4.24
6713 7244 8.365060 TGAATTGGTTCCACTTGATATTTCAT 57.635 30.769 0.00 0.00 33.26 2.57
6738 7275 7.325660 ACACATGTTGGATATTTCAGATCAC 57.674 36.000 0.00 0.00 0.00 3.06
6750 7287 3.548745 TCAGATCACCACCTGCTATTG 57.451 47.619 0.00 0.00 0.00 1.90
6764 7301 6.370994 CACCTGCTATTGATCTGCCTAATAAG 59.629 42.308 0.00 0.00 0.00 1.73
7095 7632 6.479095 TTACTTGCCAAAATTTAATGCTGC 57.521 33.333 0.00 0.00 0.00 5.25
7096 7633 4.644498 ACTTGCCAAAATTTAATGCTGCT 58.356 34.783 0.00 0.00 0.00 4.24
7176 7713 4.574013 ACTTTCAAACAGAAGAGCACTCTG 59.426 41.667 0.00 7.86 40.36 3.35
7224 7761 7.355101 TCTGTACATCTGAGTACCTAATTCCT 58.645 38.462 0.00 0.00 42.84 3.36
7430 7968 7.390440 AGGATCTCGTCATTATTCTAGAGACAG 59.610 40.741 9.10 6.22 37.54 3.51
7561 8099 7.872061 ATGTTCTTGTATGTCCAGGGATATA 57.128 36.000 1.10 1.10 0.00 0.86
7563 8101 6.042781 TGTTCTTGTATGTCCAGGGATATACC 59.957 42.308 23.94 13.50 43.76 2.73
7570 8108 7.959152 TGTATGTCCAGGGATATACCATTTAGA 59.041 37.037 23.94 8.24 43.76 2.10
7593 8131 8.807667 AGATCTAAACTCAATTTTGCAAAGTG 57.192 30.769 12.41 14.17 0.00 3.16
7598 8136 9.264782 CTAAACTCAATTTTGCAAAGTGTTTTG 57.735 29.630 23.38 19.75 45.17 2.44
7837 8375 3.681897 TCGAAGAGAAAGATCAAGCAAGC 59.318 43.478 0.00 0.00 0.00 4.01
7965 8503 0.329596 AGAACCCAGATGCCTGTTCC 59.670 55.000 0.00 0.00 38.74 3.62
8011 8549 7.553881 TGGTGTAGATAGCATAAAAGCTTTC 57.446 36.000 13.10 0.00 43.70 2.62
8056 8594 9.315525 ACTTTTTGTAGAGAGAACTGAACTTAC 57.684 33.333 0.00 0.00 0.00 2.34
8112 8733 6.683974 ATTGTACTACATTGAGATGGCAAC 57.316 37.500 0.00 0.00 37.60 4.17
8128 8749 1.228862 AACATTGGTGCACCCCCTC 60.229 57.895 32.62 8.33 34.29 4.30
8156 8777 5.263599 TGAAAATGTAGTACTCCCTCCGTA 58.736 41.667 0.00 0.00 0.00 4.02
8157 8778 5.716228 TGAAAATGTAGTACTCCCTCCGTAA 59.284 40.000 0.00 0.00 0.00 3.18
8158 8779 6.211184 TGAAAATGTAGTACTCCCTCCGTAAA 59.789 38.462 0.00 0.00 0.00 2.01
8160 8781 4.307032 TGTAGTACTCCCTCCGTAAACT 57.693 45.455 0.00 0.00 0.00 2.66
8165 8786 8.220559 TGTAGTACTCCCTCCGTAAACTAATAT 58.779 37.037 0.00 0.00 0.00 1.28
8169 8790 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
8170 8791 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
8171 8792 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
8202 8823 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
8203 8824 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
8204 8825 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
8205 8826 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
8206 8827 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
8208 8829 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
8241 9028 3.116551 AGAGGGAGTATAAGGCATCCACT 60.117 47.826 0.00 0.00 33.24 4.00
8263 9050 5.598417 ACTTTTTCCACCAGTTAGCTCAAAT 59.402 36.000 0.00 0.00 0.00 2.32
8475 9268 2.563427 GAGCTTGCGCCCTTTGTC 59.437 61.111 4.18 0.00 36.60 3.18
8607 9400 0.550914 ACCACCTTGCTGAACCTGAA 59.449 50.000 0.00 0.00 0.00 3.02
8752 9545 1.146041 GTAGATGATGGCGGCCACA 59.854 57.895 26.48 23.07 35.80 4.17
8798 9591 1.153524 ATGGCTGCTGGTTTGTGGA 59.846 52.632 0.00 0.00 0.00 4.02
8799 9592 0.469705 ATGGCTGCTGGTTTGTGGAA 60.470 50.000 0.00 0.00 0.00 3.53
8800 9593 0.469705 TGGCTGCTGGTTTGTGGAAT 60.470 50.000 0.00 0.00 0.00 3.01
8801 9594 0.681175 GGCTGCTGGTTTGTGGAATT 59.319 50.000 0.00 0.00 0.00 2.17
8802 9595 1.606224 GGCTGCTGGTTTGTGGAATTG 60.606 52.381 0.00 0.00 0.00 2.32
8803 9596 1.069049 GCTGCTGGTTTGTGGAATTGT 59.931 47.619 0.00 0.00 0.00 2.71
8804 9597 2.746269 CTGCTGGTTTGTGGAATTGTG 58.254 47.619 0.00 0.00 0.00 3.33
8805 9598 1.411977 TGCTGGTTTGTGGAATTGTGG 59.588 47.619 0.00 0.00 0.00 4.17
8812 9605 2.647683 TGTGGAATTGTGGTGTGCTA 57.352 45.000 0.00 0.00 0.00 3.49
8814 9607 1.812571 GTGGAATTGTGGTGTGCTAGG 59.187 52.381 0.00 0.00 0.00 3.02
8815 9608 0.811281 GGAATTGTGGTGTGCTAGGC 59.189 55.000 0.00 0.00 0.00 3.93
8823 9616 0.811616 GGTGTGCTAGGCTTGGATCG 60.812 60.000 0.00 0.00 0.00 3.69
8837 9630 3.526931 TGGATCGATCAGTGAGGTTTC 57.473 47.619 25.93 5.95 0.00 2.78
8855 9648 1.809684 TCGAAGCTCGAGAGTTGAGA 58.190 50.000 18.75 7.49 44.82 3.27
8856 9649 2.360844 TCGAAGCTCGAGAGTTGAGAT 58.639 47.619 18.75 0.00 44.82 2.75
8858 9651 2.096657 CGAAGCTCGAGAGTTGAGATCA 59.903 50.000 18.75 0.00 43.74 2.92
8866 9659 4.335037 TCGAGAGTTGAGATCAGTCAGATG 59.665 45.833 0.00 0.00 37.00 2.90
8871 9664 4.222366 AGTTGAGATCAGTCAGATGCTCAA 59.778 41.667 0.00 0.00 42.23 3.02
8877 9670 4.813750 TCAGTCAGATGCTCAAATCAGA 57.186 40.909 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.382793 CCTGTAAACCCTAAGCTCCACTAC 60.383 50.000 0.00 0.00 0.00 2.73
1 2 3.773119 CCTGTAAACCCTAAGCTCCACTA 59.227 47.826 0.00 0.00 0.00 2.74
2 3 2.572104 CCTGTAAACCCTAAGCTCCACT 59.428 50.000 0.00 0.00 0.00 4.00
3 4 2.305052 ACCTGTAAACCCTAAGCTCCAC 59.695 50.000 0.00 0.00 0.00 4.02
4 5 2.627933 ACCTGTAAACCCTAAGCTCCA 58.372 47.619 0.00 0.00 0.00 3.86
5 6 3.773667 ACTACCTGTAAACCCTAAGCTCC 59.226 47.826 0.00 0.00 0.00 4.70
6 7 4.382793 CCACTACCTGTAAACCCTAAGCTC 60.383 50.000 0.00 0.00 0.00 4.09
7 8 3.518303 CCACTACCTGTAAACCCTAAGCT 59.482 47.826 0.00 0.00 0.00 3.74
8 9 3.516700 TCCACTACCTGTAAACCCTAAGC 59.483 47.826 0.00 0.00 0.00 3.09
9 10 4.382793 GCTCCACTACCTGTAAACCCTAAG 60.383 50.000 0.00 0.00 0.00 2.18
10 11 3.516700 GCTCCACTACCTGTAAACCCTAA 59.483 47.826 0.00 0.00 0.00 2.69
11 12 3.102204 GCTCCACTACCTGTAAACCCTA 58.898 50.000 0.00 0.00 0.00 3.53
12 13 1.907255 GCTCCACTACCTGTAAACCCT 59.093 52.381 0.00 0.00 0.00 4.34
13 14 1.626825 TGCTCCACTACCTGTAAACCC 59.373 52.381 0.00 0.00 0.00 4.11
14 15 3.007614 TCTTGCTCCACTACCTGTAAACC 59.992 47.826 0.00 0.00 0.00 3.27
15 16 3.995048 GTCTTGCTCCACTACCTGTAAAC 59.005 47.826 0.00 0.00 0.00 2.01
16 17 3.644265 TGTCTTGCTCCACTACCTGTAAA 59.356 43.478 0.00 0.00 0.00 2.01
17 18 3.006537 GTGTCTTGCTCCACTACCTGTAA 59.993 47.826 0.00 0.00 0.00 2.41
18 19 2.561419 GTGTCTTGCTCCACTACCTGTA 59.439 50.000 0.00 0.00 0.00 2.74
19 20 1.344763 GTGTCTTGCTCCACTACCTGT 59.655 52.381 0.00 0.00 0.00 4.00
20 21 1.338200 GGTGTCTTGCTCCACTACCTG 60.338 57.143 0.00 0.00 0.00 4.00
21 22 0.977395 GGTGTCTTGCTCCACTACCT 59.023 55.000 0.00 0.00 0.00 3.08
22 23 0.685097 TGGTGTCTTGCTCCACTACC 59.315 55.000 0.00 0.00 35.98 3.18
23 24 2.543777 TTGGTGTCTTGCTCCACTAC 57.456 50.000 0.00 0.00 40.12 2.73
24 25 3.569194 TTTTGGTGTCTTGCTCCACTA 57.431 42.857 0.00 0.00 40.12 2.74
25 26 2.435372 TTTTGGTGTCTTGCTCCACT 57.565 45.000 0.00 0.00 40.12 4.00
26 27 2.362077 ACATTTTGGTGTCTTGCTCCAC 59.638 45.455 0.00 0.00 40.12 4.02
27 28 2.622942 GACATTTTGGTGTCTTGCTCCA 59.377 45.455 0.08 0.00 43.96 3.86
28 29 2.350772 CGACATTTTGGTGTCTTGCTCC 60.351 50.000 5.61 0.00 44.89 4.70
29 30 2.350772 CCGACATTTTGGTGTCTTGCTC 60.351 50.000 5.61 0.00 44.89 4.26
30 31 1.608590 CCGACATTTTGGTGTCTTGCT 59.391 47.619 5.61 0.00 44.89 3.91
31 32 1.336755 ACCGACATTTTGGTGTCTTGC 59.663 47.619 5.61 0.00 44.89 4.01
32 33 3.315191 AGAACCGACATTTTGGTGTCTTG 59.685 43.478 5.61 0.18 44.89 3.02
33 34 3.551846 AGAACCGACATTTTGGTGTCTT 58.448 40.909 5.61 0.00 44.89 3.01
34 35 3.208747 AGAACCGACATTTTGGTGTCT 57.791 42.857 5.61 0.00 44.89 3.41
35 36 3.982576 AAGAACCGACATTTTGGTGTC 57.017 42.857 0.00 0.00 38.79 3.67
36 37 4.457949 GGATAAGAACCGACATTTTGGTGT 59.542 41.667 0.00 0.00 38.79 4.16
37 38 4.700213 AGGATAAGAACCGACATTTTGGTG 59.300 41.667 0.00 0.00 38.79 4.17
38 39 4.918588 AGGATAAGAACCGACATTTTGGT 58.081 39.130 0.00 0.00 42.01 3.67
39 40 5.640732 CAAGGATAAGAACCGACATTTTGG 58.359 41.667 0.00 0.00 0.00 3.28
40 41 5.095490 GCAAGGATAAGAACCGACATTTTG 58.905 41.667 0.00 0.00 0.00 2.44
41 42 5.010282 AGCAAGGATAAGAACCGACATTTT 58.990 37.500 0.00 0.00 0.00 1.82
42 43 4.396166 CAGCAAGGATAAGAACCGACATTT 59.604 41.667 0.00 0.00 0.00 2.32
43 44 3.941483 CAGCAAGGATAAGAACCGACATT 59.059 43.478 0.00 0.00 0.00 2.71
44 45 3.535561 CAGCAAGGATAAGAACCGACAT 58.464 45.455 0.00 0.00 0.00 3.06
45 46 2.354704 CCAGCAAGGATAAGAACCGACA 60.355 50.000 0.00 0.00 41.22 4.35
46 47 2.280628 CCAGCAAGGATAAGAACCGAC 58.719 52.381 0.00 0.00 41.22 4.79
47 48 1.209504 CCCAGCAAGGATAAGAACCGA 59.790 52.381 0.00 0.00 41.22 4.69
48 49 1.668419 CCCAGCAAGGATAAGAACCG 58.332 55.000 0.00 0.00 41.22 4.44
49 50 1.393603 GCCCAGCAAGGATAAGAACC 58.606 55.000 0.00 0.00 41.22 3.62
50 51 1.393603 GGCCCAGCAAGGATAAGAAC 58.606 55.000 0.00 0.00 41.22 3.01
51 52 0.258774 GGGCCCAGCAAGGATAAGAA 59.741 55.000 19.95 0.00 41.22 2.52
52 53 1.645402 GGGGCCCAGCAAGGATAAGA 61.645 60.000 26.86 0.00 41.22 2.10
53 54 1.152673 GGGGCCCAGCAAGGATAAG 60.153 63.158 26.86 0.00 41.22 1.73
54 55 3.015383 GGGGCCCAGCAAGGATAA 58.985 61.111 26.86 0.00 41.22 1.75
55 56 3.488569 CGGGGCCCAGCAAGGATA 61.489 66.667 26.86 0.00 41.22 2.59
68 69 2.908940 GAATCAGGGCATGCGGGG 60.909 66.667 12.44 3.03 0.00 5.73
69 70 3.282157 CGAATCAGGGCATGCGGG 61.282 66.667 12.44 3.43 0.00 6.13
70 71 2.514592 ACGAATCAGGGCATGCGG 60.515 61.111 12.44 3.83 0.00 5.69
71 72 2.537560 GGACGAATCAGGGCATGCG 61.538 63.158 12.44 0.00 0.00 4.73
72 73 0.749454 AAGGACGAATCAGGGCATGC 60.749 55.000 9.90 9.90 0.00 4.06
73 74 1.402968 CAAAGGACGAATCAGGGCATG 59.597 52.381 0.00 0.00 0.00 4.06
74 75 1.683011 CCAAAGGACGAATCAGGGCAT 60.683 52.381 0.00 0.00 0.00 4.40
75 76 0.322456 CCAAAGGACGAATCAGGGCA 60.322 55.000 0.00 0.00 0.00 5.36
76 77 1.657751 GCCAAAGGACGAATCAGGGC 61.658 60.000 0.00 0.00 0.00 5.19
77 78 0.035056 AGCCAAAGGACGAATCAGGG 60.035 55.000 0.00 0.00 0.00 4.45
78 79 1.826385 AAGCCAAAGGACGAATCAGG 58.174 50.000 0.00 0.00 0.00 3.86
79 80 4.035675 GGATAAAGCCAAAGGACGAATCAG 59.964 45.833 0.00 0.00 0.00 2.90
80 81 3.945285 GGATAAAGCCAAAGGACGAATCA 59.055 43.478 0.00 0.00 0.00 2.57
81 82 3.945285 TGGATAAAGCCAAAGGACGAATC 59.055 43.478 0.00 0.00 34.31 2.52
82 83 3.947834 CTGGATAAAGCCAAAGGACGAAT 59.052 43.478 0.00 0.00 37.52 3.34
83 84 3.343617 CTGGATAAAGCCAAAGGACGAA 58.656 45.455 0.00 0.00 37.52 3.85
84 85 2.939640 GCTGGATAAAGCCAAAGGACGA 60.940 50.000 0.00 0.00 37.52 4.20
127 128 2.020694 GCAACTAGGTGATGCAGCCAT 61.021 52.381 13.29 0.00 42.94 4.40
133 134 2.436417 TCCAAAGCAACTAGGTGATGC 58.564 47.619 13.29 7.93 43.63 3.91
140 141 8.755018 CATTTGTAGTTTTTCCAAAGCAACTAG 58.245 33.333 0.00 0.00 33.42 2.57
160 161 9.844257 TTAATCCAACCTTTTGAATTCATTTGT 57.156 25.926 9.40 2.02 34.24 2.83
214 215 4.133820 TGCAGCTTGTAAGAACTTGCTTA 58.866 39.130 0.00 0.00 34.37 3.09
388 389 6.325993 TCATTCATCCAAATTCCTACAGGA 57.674 37.500 0.00 0.00 43.73 3.86
389 390 7.094463 GCTATCATTCATCCAAATTCCTACAGG 60.094 40.741 0.00 0.00 0.00 4.00
392 393 7.229306 TGTGCTATCATTCATCCAAATTCCTAC 59.771 37.037 0.00 0.00 0.00 3.18
454 455 8.029522 GGGAGTATTTTGGAAAGAAAGAATCAC 58.970 37.037 0.00 0.00 27.58 3.06
963 1120 3.541713 GCGGAGTGGGCTAGGGAG 61.542 72.222 0.00 0.00 0.00 4.30
1379 1536 0.588252 GCGCACCAGCCATTATACTG 59.412 55.000 0.30 0.00 37.52 2.74
1458 1639 7.482743 CACACAAATATATTGAAGTCTGTGCAC 59.517 37.037 18.90 10.75 37.11 4.57
1476 1657 4.383850 TTTGCACTGCTAACACACAAAT 57.616 36.364 1.98 0.00 0.00 2.32
1566 1753 7.175641 CACCATGAACAAATTCTTAGAGAAGGT 59.824 37.037 0.00 0.00 37.69 3.50
1936 2123 7.912773 CGTAATCAGCTCTATATATGTCACCAG 59.087 40.741 0.00 0.00 0.00 4.00
1967 2154 3.493350 CCTCACAGCTGACACAGTAAAGT 60.493 47.826 23.35 0.00 33.43 2.66
2197 2386 3.368739 GCACAGGGCAGCAATTATTTTCT 60.369 43.478 0.00 0.00 43.97 2.52
2398 2587 5.447624 ACCGCAATTTTTAGCAGTAACTT 57.552 34.783 0.00 0.00 0.00 2.66
2415 2604 6.811253 ATAGTTCTACATTTTTCAACCGCA 57.189 33.333 0.00 0.00 0.00 5.69
2657 2846 3.056821 GGGTTGCCAGAAAGGAAATGTAC 60.057 47.826 0.00 0.00 37.23 2.90
2679 2868 8.944029 GGATGATATCTAAGTGACCATTTGATG 58.056 37.037 3.98 0.00 0.00 3.07
2680 2869 8.888419 AGGATGATATCTAAGTGACCATTTGAT 58.112 33.333 3.98 0.00 0.00 2.57
2811 3009 1.609555 ACTCTTCACTGTCTGTCGACC 59.390 52.381 14.12 0.00 39.47 4.79
2817 3015 5.918011 GTCTAAAGACACTCTTCACTGTCTG 59.082 44.000 5.24 0.00 45.19 3.51
2882 3080 2.568090 CGCCAAACCCTGACATGC 59.432 61.111 0.00 0.00 0.00 4.06
2896 3095 2.175811 CGCACTGTTTAAGCCGCC 59.824 61.111 0.00 0.00 0.00 6.13
2904 3103 1.459450 ACACCAAACTCGCACTGTTT 58.541 45.000 0.00 0.00 38.04 2.83
2905 3104 1.132262 CAACACCAAACTCGCACTGTT 59.868 47.619 0.00 0.00 0.00 3.16
2960 3159 3.557054 GCCAGAAACTACATCAGGTGACA 60.557 47.826 0.00 0.00 0.00 3.58
2977 3176 0.694444 GGGTAGGGGAGATTGCCAGA 60.694 60.000 0.00 0.00 0.00 3.86
3017 3216 6.003950 TCAGTAAGCTTTTTAGCCAAGACAT 58.996 36.000 3.20 0.00 34.90 3.06
3061 3260 4.090354 CAGCGCAAGGAAAATAAACATGTG 59.910 41.667 11.47 0.00 38.28 3.21
3111 3311 3.188254 CCGATGCACACATGTACTTTGAA 59.812 43.478 0.00 0.00 36.35 2.69
3523 3725 4.704540 CCTAATAAGGCATCAAACCACACA 59.295 41.667 0.00 0.00 35.64 3.72
3561 3763 3.689414 CCAAGCAGCAGGCATGAA 58.311 55.556 0.62 0.00 43.74 2.57
3585 3787 1.535028 TGCAACCTGTTCATGCTTACG 59.465 47.619 0.00 0.00 40.66 3.18
3644 3846 0.810031 ATATCAGACAACACGCCGCC 60.810 55.000 0.00 0.00 0.00 6.13
3829 4031 7.409697 AGTTAACTGCTCATTTATTACATGCG 58.590 34.615 7.48 0.00 0.00 4.73
3919 4130 7.551585 ACAAACATACAGAAATGAACAACCAA 58.448 30.769 0.00 0.00 0.00 3.67
4266 4479 7.713750 TGTTAGCTGGTTACTGTATAGATCAC 58.286 38.462 0.00 0.00 0.00 3.06
4276 4489 5.235186 GCTATGTGATGTTAGCTGGTTACTG 59.765 44.000 0.00 0.00 38.22 2.74
4504 4717 1.141053 CTTTCGGGAACTAGGGGATGG 59.859 57.143 0.00 0.00 0.00 3.51
4514 4727 2.814280 TGTCTCTCACTTTCGGGAAC 57.186 50.000 0.00 0.00 0.00 3.62
4520 4733 3.431572 GCTGTCACATGTCTCTCACTTTC 59.568 47.826 0.00 0.00 0.00 2.62
4533 4746 8.940952 GTTCTTTCTATTTCTTAGCTGTCACAT 58.059 33.333 0.00 0.00 0.00 3.21
4786 5000 1.134401 ACCGCAATATGTCCTGAGGTG 60.134 52.381 0.00 0.00 43.17 4.00
5192 5708 4.039852 TGCCCTCACGAATGCTAATACATA 59.960 41.667 0.00 0.00 0.00 2.29
5193 5709 3.181455 TGCCCTCACGAATGCTAATACAT 60.181 43.478 0.00 0.00 0.00 2.29
5194 5710 2.169561 TGCCCTCACGAATGCTAATACA 59.830 45.455 0.00 0.00 0.00 2.29
5195 5711 2.802816 CTGCCCTCACGAATGCTAATAC 59.197 50.000 0.00 0.00 0.00 1.89
5196 5712 2.224281 CCTGCCCTCACGAATGCTAATA 60.224 50.000 0.00 0.00 0.00 0.98
5197 5713 1.475751 CCTGCCCTCACGAATGCTAAT 60.476 52.381 0.00 0.00 0.00 1.73
5198 5714 0.107703 CCTGCCCTCACGAATGCTAA 60.108 55.000 0.00 0.00 0.00 3.09
5199 5715 1.522092 CCTGCCCTCACGAATGCTA 59.478 57.895 0.00 0.00 0.00 3.49
5200 5716 2.270205 CCTGCCCTCACGAATGCT 59.730 61.111 0.00 0.00 0.00 3.79
5201 5717 3.512516 GCCTGCCCTCACGAATGC 61.513 66.667 0.00 0.00 0.00 3.56
5202 5718 2.825836 GGCCTGCCCTCACGAATG 60.826 66.667 0.00 0.00 0.00 2.67
5203 5719 3.011517 AGGCCTGCCCTCACGAAT 61.012 61.111 3.11 0.00 41.21 3.34
5204 5720 4.020617 CAGGCCTGCCCTCACGAA 62.021 66.667 22.33 0.00 44.09 3.85
5218 5734 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
5219 5735 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
5220 5736 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
5221 5737 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
5222 5738 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
5223 5739 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
5224 5740 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
5230 5746 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
5231 5747 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
5232 5748 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
5233 5749 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
5234 5750 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
5235 5751 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
5236 5752 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
5247 5763 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
5248 5764 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
5249 5765 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
5250 5766 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
5251 5767 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
5252 5768 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
5253 5769 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
5254 5770 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
5255 5771 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
5256 5772 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
5265 5781 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
5266 5782 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
5267 5783 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
5268 5784 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
5269 5785 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
5270 5786 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
5271 5787 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
5272 5788 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
5274 5790 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
5275 5791 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
5276 5792 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
5277 5793 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
5288 5804 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
5289 5805 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
5290 5806 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
5291 5807 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
5292 5808 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
5293 5809 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
5294 5810 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
5295 5811 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
5296 5812 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
5297 5813 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
5298 5814 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
5299 5815 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
5300 5816 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
5301 5817 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
5302 5818 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
5303 5819 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
5304 5820 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
5305 5821 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
5306 5822 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
5307 5823 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
5308 5824 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
5309 5825 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
5310 5826 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
5311 5827 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
5312 5828 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
5313 5829 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
5314 5830 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
5315 5831 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
5316 5832 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
5317 5833 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
5318 5834 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
5319 5835 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
5320 5836 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
5321 5837 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
5323 5839 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
5324 5840 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
5325 5841 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
5326 5842 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
5327 5843 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
5328 5844 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
5329 5845 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
5337 5853 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
5338 5854 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
5339 5855 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
5340 5856 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
5341 5857 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
5342 5858 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
5343 5859 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
5344 5860 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
5345 5861 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
5346 5862 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
5347 5863 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
5348 5864 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
5349 5865 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
5350 5866 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
5351 5867 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
5352 5868 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
5353 5869 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
5354 5870 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
5355 5871 2.543037 TAGGACAGACCCAGTGCATA 57.457 50.000 0.00 0.00 40.05 3.14
5356 5872 1.487976 CATAGGACAGACCCAGTGCAT 59.512 52.381 0.00 0.00 40.05 3.96
5357 5873 0.904649 CATAGGACAGACCCAGTGCA 59.095 55.000 0.00 0.00 40.05 4.57
5358 5874 0.905357 ACATAGGACAGACCCAGTGC 59.095 55.000 0.00 0.00 40.05 4.40
5359 5875 5.509840 GCTAATACATAGGACAGACCCAGTG 60.510 48.000 0.00 0.00 40.05 3.66
5360 5876 4.589374 GCTAATACATAGGACAGACCCAGT 59.411 45.833 0.00 0.00 40.05 4.00
5361 5877 4.588951 TGCTAATACATAGGACAGACCCAG 59.411 45.833 0.00 0.00 40.05 4.45
5362 5878 4.552674 TGCTAATACATAGGACAGACCCA 58.447 43.478 0.00 0.00 40.05 4.51
5363 5879 5.746990 ATGCTAATACATAGGACAGACCC 57.253 43.478 0.00 0.00 40.05 4.46
5364 5880 5.864474 CGAATGCTAATACATAGGACAGACC 59.136 44.000 0.00 0.00 34.49 3.85
5365 5881 6.448006 ACGAATGCTAATACATAGGACAGAC 58.552 40.000 0.00 0.00 34.49 3.51
5366 5882 6.294564 GGACGAATGCTAATACATAGGACAGA 60.295 42.308 0.00 0.00 34.49 3.41
5367 5883 5.864474 GGACGAATGCTAATACATAGGACAG 59.136 44.000 0.00 0.00 34.49 3.51
5368 5884 5.538813 AGGACGAATGCTAATACATAGGACA 59.461 40.000 0.00 0.00 34.49 4.02
5369 5885 6.026947 AGGACGAATGCTAATACATAGGAC 57.973 41.667 0.00 0.00 34.49 3.85
5370 5886 6.665992 AAGGACGAATGCTAATACATAGGA 57.334 37.500 0.00 0.00 36.30 2.94
5371 5887 7.730364 AAAAGGACGAATGCTAATACATAGG 57.270 36.000 0.00 0.00 31.83 2.57
5372 5888 8.709646 GGTAAAAGGACGAATGCTAATACATAG 58.290 37.037 0.00 0.00 34.52 2.23
5449 5965 3.826729 AGAAGGTGGCCAAAAATACAGAC 59.173 43.478 7.24 0.00 0.00 3.51
5584 6100 7.748691 ATTTCCCAGAAAAATGGACAAATTG 57.251 32.000 0.00 0.00 43.57 2.32
5637 6153 2.110188 ACTCCTACTCAACCTGTCCTGA 59.890 50.000 0.00 0.00 0.00 3.86
5661 6177 8.458843 CCATACGCATCCCTATAAAATTAAAGG 58.541 37.037 0.00 0.00 0.00 3.11
5718 6234 2.103538 CATGCGCACCAATGAGGC 59.896 61.111 14.90 0.00 43.14 4.70
5985 6501 5.361857 CCCATCATTGCCAAATTCTACTTCT 59.638 40.000 0.00 0.00 0.00 2.85
6125 6641 7.924947 ACTAACCACTTAAGACAGACAGTTAAC 59.075 37.037 10.09 0.00 0.00 2.01
6253 6769 2.855660 TGAATGAATTGCCATCTGCG 57.144 45.000 0.00 0.00 45.60 5.18
6451 6971 9.452287 AAGCTTTTGTAATGCATTATTGGAAAT 57.548 25.926 21.52 4.88 34.29 2.17
6460 6980 5.469760 GGGTTTCAAGCTTTTGTAATGCATT 59.530 36.000 17.56 17.56 34.29 3.56
6617 7138 5.050644 TCACATGTCAATTCAGCAATCAC 57.949 39.130 0.00 0.00 0.00 3.06
6620 7150 7.156000 TCATTTTCACATGTCAATTCAGCAAT 58.844 30.769 0.00 0.00 0.00 3.56
6640 7170 1.337703 TGAAGCGCTTGTTGCTCATTT 59.662 42.857 30.47 0.00 43.14 2.32
6673 7204 5.007034 ACCAATTCATAATGGACAACACGA 58.993 37.500 0.00 0.00 39.12 4.35
6713 7244 7.498900 GGTGATCTGAAATATCCAACATGTGTA 59.501 37.037 0.00 0.00 0.00 2.90
6738 7275 1.142465 AGGCAGATCAATAGCAGGTGG 59.858 52.381 0.00 0.00 0.00 4.61
6764 7301 8.351495 TGCAAACATGTGTTAAAAGAATCTTC 57.649 30.769 0.00 0.00 37.25 2.87
6839 7376 1.479323 TCGCCTTGTCCACCTGTATAC 59.521 52.381 0.00 0.00 0.00 1.47
7095 7632 4.025015 GCATCATGCAGTTTGACCTTAG 57.975 45.455 4.20 0.00 44.26 2.18
7353 7890 8.028354 TGAATAAGGCACATATCACAAACAAAG 58.972 33.333 0.00 0.00 0.00 2.77
7561 8099 9.860898 GCAAAATTGAGTTTAGATCTAAATGGT 57.139 29.630 26.46 16.26 37.37 3.55
7570 8108 8.947055 AACACTTTGCAAAATTGAGTTTAGAT 57.053 26.923 21.56 0.60 0.00 1.98
7593 8131 3.004734 ACACTAGACAATGGCTGCAAAAC 59.995 43.478 0.00 0.00 0.00 2.43
7598 8136 1.813513 ACACACTAGACAATGGCTGC 58.186 50.000 0.00 0.00 0.00 5.25
7837 8375 3.100111 CCCTTCCCCTCCTTTGGG 58.900 66.667 0.00 0.00 46.68 4.12
7938 8476 3.074538 AGGCATCTGGGTTCTACAGTTTT 59.925 43.478 0.00 0.00 37.25 2.43
7939 8477 2.644798 AGGCATCTGGGTTCTACAGTTT 59.355 45.455 0.00 0.00 37.25 2.66
7965 8503 5.686834 CATCAGATATGAGATGGTTTTGCG 58.313 41.667 0.00 0.00 38.33 4.85
8056 8594 3.347077 AGCCTGAGAGAACAGAATTGG 57.653 47.619 0.00 0.00 39.94 3.16
8112 8733 2.362889 GGAGGGGGTGCACCAATG 60.363 66.667 35.78 0.00 42.91 2.82
8128 8749 5.243207 AGGGAGTACTACATTTTCAAACGG 58.757 41.667 7.57 0.00 0.00 4.44
8176 8797 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
8178 8799 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
8179 8800 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
8180 8801 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
8181 8802 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
8182 8803 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
8197 8818 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
8199 8820 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
8200 8821 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
8201 8822 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
8208 8829 9.086758 GCCTTATACTCCCTCTGTAAACTAATA 57.913 37.037 0.00 0.00 0.00 0.98
8210 8831 6.899075 TGCCTTATACTCCCTCTGTAAACTAA 59.101 38.462 0.00 0.00 0.00 2.24
8212 8833 5.278061 TGCCTTATACTCCCTCTGTAAACT 58.722 41.667 0.00 0.00 0.00 2.66
8213 8834 5.609533 TGCCTTATACTCCCTCTGTAAAC 57.390 43.478 0.00 0.00 0.00 2.01
8214 8835 5.307196 GGATGCCTTATACTCCCTCTGTAAA 59.693 44.000 0.00 0.00 0.00 2.01
8216 8837 4.140782 TGGATGCCTTATACTCCCTCTGTA 60.141 45.833 0.00 0.00 0.00 2.74
8218 8839 3.007398 GTGGATGCCTTATACTCCCTCTG 59.993 52.174 0.00 0.00 0.00 3.35
8219 8840 3.116551 AGTGGATGCCTTATACTCCCTCT 60.117 47.826 0.00 0.00 0.00 3.69
8241 9028 6.478512 AATTTGAGCTAACTGGTGGAAAAA 57.521 33.333 0.00 0.00 0.00 1.94
8279 9066 4.212425 TCGTGCGCATTCTAGAAAGAAAAA 59.788 37.500 15.91 0.00 44.75 1.94
8280 9067 3.743911 TCGTGCGCATTCTAGAAAGAAAA 59.256 39.130 15.91 0.00 44.75 2.29
8281 9068 3.322369 TCGTGCGCATTCTAGAAAGAAA 58.678 40.909 15.91 0.00 44.75 2.52
8282 9069 2.923655 CTCGTGCGCATTCTAGAAAGAA 59.076 45.455 15.91 0.00 45.63 2.52
8284 9071 2.028523 CACTCGTGCGCATTCTAGAAAG 59.971 50.000 15.91 6.28 0.00 2.62
8295 9082 1.346365 TCTAAATGTCACTCGTGCGC 58.654 50.000 0.00 0.00 0.00 6.09
8483 9276 0.113776 AAGGTGGAGGTGTACGAGGA 59.886 55.000 0.00 0.00 0.00 3.71
8551 9344 0.981183 TGGTGTCGGGCTTCAACTAT 59.019 50.000 0.00 0.00 0.00 2.12
8752 9545 1.816537 CATCACCCTCGTCATCGGT 59.183 57.895 0.00 0.00 37.69 4.69
8798 9591 1.888512 CAAGCCTAGCACACCACAATT 59.111 47.619 0.00 0.00 0.00 2.32
8799 9592 1.538047 CAAGCCTAGCACACCACAAT 58.462 50.000 0.00 0.00 0.00 2.71
8800 9593 0.537143 CCAAGCCTAGCACACCACAA 60.537 55.000 0.00 0.00 0.00 3.33
8801 9594 1.073025 CCAAGCCTAGCACACCACA 59.927 57.895 0.00 0.00 0.00 4.17
8802 9595 0.035056 ATCCAAGCCTAGCACACCAC 60.035 55.000 0.00 0.00 0.00 4.16
8803 9596 0.253044 GATCCAAGCCTAGCACACCA 59.747 55.000 0.00 0.00 0.00 4.17
8804 9597 0.811616 CGATCCAAGCCTAGCACACC 60.812 60.000 0.00 0.00 0.00 4.16
8805 9598 0.175760 TCGATCCAAGCCTAGCACAC 59.824 55.000 0.00 0.00 0.00 3.82
8812 9605 1.411977 CTCACTGATCGATCCAAGCCT 59.588 52.381 22.31 0.00 0.00 4.58
8814 9607 1.137872 ACCTCACTGATCGATCCAAGC 59.862 52.381 22.31 0.00 0.00 4.01
8815 9608 3.533606 AACCTCACTGATCGATCCAAG 57.466 47.619 22.31 15.89 0.00 3.61
8823 9616 2.926838 GAGCTTCGAAACCTCACTGATC 59.073 50.000 16.44 1.03 0.00 2.92
8837 9630 2.096657 TGATCTCAACTCTCGAGCTTCG 59.903 50.000 7.81 0.00 42.10 3.79
8844 9637 4.600032 CATCTGACTGATCTCAACTCTCG 58.400 47.826 0.00 0.00 32.05 4.04
8850 9643 4.813750 TTGAGCATCTGACTGATCTCAA 57.186 40.909 20.40 20.40 41.41 3.02
8851 9644 4.813750 TTTGAGCATCTGACTGATCTCA 57.186 40.909 14.58 14.58 37.46 3.27
8852 9645 5.358090 TGATTTGAGCATCTGACTGATCTC 58.642 41.667 0.00 11.43 32.81 2.75
8853 9646 5.128991 TCTGATTTGAGCATCTGACTGATCT 59.871 40.000 0.00 0.00 32.81 2.75
8854 9647 5.234757 GTCTGATTTGAGCATCTGACTGATC 59.765 44.000 11.96 0.00 43.61 2.92
8855 9648 5.117584 GTCTGATTTGAGCATCTGACTGAT 58.882 41.667 11.96 0.00 43.61 2.90
8856 9649 4.502016 GTCTGATTTGAGCATCTGACTGA 58.498 43.478 11.96 0.00 43.61 3.41
8858 9651 3.194329 TCGTCTGATTTGAGCATCTGACT 59.806 43.478 15.22 0.00 44.25 3.41
8866 9659 2.863137 GTGATCCTCGTCTGATTTGAGC 59.137 50.000 0.00 0.00 0.00 4.26
8871 9664 3.092301 TGTCAGTGATCCTCGTCTGATT 58.908 45.455 0.00 0.00 38.80 2.57
8877 9670 2.171003 TCACATGTCAGTGATCCTCGT 58.829 47.619 0.00 0.00 43.18 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.