Multiple sequence alignment - TraesCS4B01G252300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G252300 chr4B 100.000 2357 0 0 1 2357 518146669 518149025 0.000000e+00 4353.0
1 TraesCS4B01G252300 chr4B 83.333 126 13 5 1 119 537256425 537256549 2.480000e-20 110.0
2 TraesCS4B01G252300 chr4B 81.102 127 18 4 1 121 385385636 385385762 1.930000e-16 97.1
3 TraesCS4B01G252300 chr4D 97.503 721 17 1 1637 2357 421332371 421333090 0.000000e+00 1230.0
4 TraesCS4B01G252300 chr4D 91.217 797 40 13 731 1515 421331568 421332346 0.000000e+00 1057.0
5 TraesCS4B01G252300 chr4D 81.598 413 43 15 279 687 68711004 68711387 6.330000e-81 311.0
6 TraesCS4B01G252300 chr4D 82.114 123 16 4 4 120 111584076 111583954 1.490000e-17 100.0
7 TraesCS4B01G252300 chr4A 96.875 672 20 1 1686 2357 42784730 42784060 0.000000e+00 1123.0
8 TraesCS4B01G252300 chr4A 89.398 830 41 19 690 1503 42785941 42785143 0.000000e+00 1002.0
9 TraesCS4B01G252300 chr4A 85.167 418 50 10 279 692 550137260 550136851 3.620000e-113 418.0
10 TraesCS4B01G252300 chr7B 87.321 418 43 10 280 691 181407885 181408298 9.860000e-129 470.0
11 TraesCS4B01G252300 chr7B 82.536 418 56 12 283 689 99109274 99108863 3.730000e-93 351.0
12 TraesCS4B01G252300 chr7B 79.856 417 65 15 279 690 580875798 580875396 1.070000e-73 287.0
13 TraesCS4B01G252300 chr7B 96.907 97 3 0 1547 1643 39914026 39913930 1.870000e-36 163.0
14 TraesCS4B01G252300 chr7B 94.949 99 4 1 1553 1650 412543762 412543664 1.130000e-33 154.0
15 TraesCS4B01G252300 chr7B 81.890 127 14 8 2 121 663460293 663460417 5.360000e-17 99.0
16 TraesCS4B01G252300 chr5D 87.321 418 44 9 276 689 509542674 509543086 9.860000e-129 470.0
17 TraesCS4B01G252300 chr5D 85.783 415 41 11 280 689 485394861 485395262 7.790000e-115 424.0
18 TraesCS4B01G252300 chr5D 92.632 95 7 0 123 217 273556648 273556554 1.140000e-28 137.0
19 TraesCS4B01G252300 chr3B 86.223 421 42 13 278 689 544546258 544545845 2.150000e-120 442.0
20 TraesCS4B01G252300 chr3B 91.919 99 7 1 118 216 293523617 293523520 1.140000e-28 137.0
21 TraesCS4B01G252300 chr3B 91.089 101 7 2 117 216 508486374 508486473 4.090000e-28 135.0
22 TraesCS4B01G252300 chr3B 90.196 102 8 2 118 218 199528944 199528844 5.290000e-27 132.0
23 TraesCS4B01G252300 chr3D 86.445 391 37 12 307 689 418216323 418215941 4.690000e-112 414.0
24 TraesCS4B01G252300 chr3D 92.553 94 7 0 119 212 535746853 535746946 4.090000e-28 135.0
25 TraesCS4B01G252300 chr3D 90.278 72 7 0 207 278 606566449 606566378 6.930000e-16 95.3
26 TraesCS4B01G252300 chr3D 88.889 72 8 0 207 278 606595464 606595393 3.230000e-14 89.8
27 TraesCS4B01G252300 chr2A 85.258 407 46 7 1675 2080 666559179 666558786 7.840000e-110 407.0
28 TraesCS4B01G252300 chr2A 82.547 424 63 11 279 695 632586545 632586126 1.720000e-96 363.0
29 TraesCS4B01G252300 chr2A 93.617 94 5 1 120 212 750324590 750324497 3.160000e-29 139.0
30 TraesCS4B01G252300 chr2A 97.368 38 1 0 227 264 434139095 434139058 5.440000e-07 65.8
31 TraesCS4B01G252300 chr7D 84.360 422 54 8 272 689 11679925 11680338 1.010000e-108 403.0
32 TraesCS4B01G252300 chr7D 97.872 94 1 1 1553 1646 481573753 481573845 6.740000e-36 161.0
33 TraesCS4B01G252300 chr6B 83.924 423 46 17 273 689 681362515 681362109 3.670000e-103 385.0
34 TraesCS4B01G252300 chr6B 83.333 126 13 5 1 119 669997988 669997864 2.480000e-20 110.0
35 TraesCS4B01G252300 chr7A 82.727 440 57 16 272 699 156877409 156877841 7.950000e-100 374.0
36 TraesCS4B01G252300 chr7A 82.787 122 13 6 2 116 481579359 481579479 4.140000e-18 102.0
37 TraesCS4B01G252300 chr7A 91.837 49 2 2 227 274 357694931 357694978 1.510000e-07 67.6
38 TraesCS4B01G252300 chr2D 85.237 359 45 8 335 689 62416429 62416783 1.720000e-96 363.0
39 TraesCS4B01G252300 chr2D 98.901 91 1 0 1554 1644 22958392 22958482 1.870000e-36 163.0
40 TraesCS4B01G252300 chr2D 88.785 107 10 2 122 226 107899778 107899884 1.900000e-26 130.0
41 TraesCS4B01G252300 chr1B 82.701 422 57 15 281 696 632667837 632667426 6.190000e-96 361.0
42 TraesCS4B01G252300 chr1B 98.936 94 1 0 1551 1644 26838141 26838048 4.030000e-38 169.0
43 TraesCS4B01G252300 chr1B 94.949 99 4 1 1548 1646 230031895 230031798 1.130000e-33 154.0
44 TraesCS4B01G252300 chr2B 84.585 253 39 0 1872 2124 614906422 614906170 3.890000e-63 252.0
45 TraesCS4B01G252300 chr2B 92.553 94 7 0 115 208 653585340 653585433 4.090000e-28 135.0
46 TraesCS4B01G252300 chr6D 94.118 102 5 1 1551 1651 437180550 437180651 1.130000e-33 154.0
47 TraesCS4B01G252300 chr1D 98.824 85 1 0 1554 1638 16084938 16084854 4.060000e-33 152.0
48 TraesCS4B01G252300 chr1D 98.824 85 1 0 1554 1638 16086893 16086809 4.060000e-33 152.0
49 TraesCS4B01G252300 chrUn 93.617 94 5 1 120 212 327154365 327154458 3.160000e-29 139.0
50 TraesCS4B01G252300 chr5A 85.586 111 10 4 1 105 42984135 42984025 6.890000e-21 111.0
51 TraesCS4B01G252300 chr1A 82.677 127 14 4 1 120 203010952 203010827 3.200000e-19 106.0
52 TraesCS4B01G252300 chr1A 81.890 127 17 4 1 121 50224753 50224879 4.140000e-18 102.0
53 TraesCS4B01G252300 chr6A 84.286 70 11 0 207 276 346954042 346953973 4.200000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G252300 chr4B 518146669 518149025 2356 False 4353.0 4353 100.0000 1 2357 1 chr4B.!!$F2 2356
1 TraesCS4B01G252300 chr4D 421331568 421333090 1522 False 1143.5 1230 94.3600 731 2357 2 chr4D.!!$F2 1626
2 TraesCS4B01G252300 chr4A 42784060 42785941 1881 True 1062.5 1123 93.1365 690 2357 2 chr4A.!!$R2 1667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 665 0.032912 TCGTATAGGGGTGTGGAGCA 60.033 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 2082 0.329596 AGAACCCAGATGCCTGTTCC 59.67 55.0 0.0 0.0 38.74 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.692115 TGAGGTGGCATAGAATTAAGTGA 57.308 39.130 0.00 0.00 0.00 3.41
24 25 6.061022 TGAGGTGGCATAGAATTAAGTGAA 57.939 37.500 0.00 0.00 0.00 3.18
25 26 6.480763 TGAGGTGGCATAGAATTAAGTGAAA 58.519 36.000 0.00 0.00 0.00 2.69
26 27 6.599244 TGAGGTGGCATAGAATTAAGTGAAAG 59.401 38.462 0.00 0.00 0.00 2.62
27 28 6.721318 AGGTGGCATAGAATTAAGTGAAAGA 58.279 36.000 0.00 0.00 0.00 2.52
28 29 7.175104 AGGTGGCATAGAATTAAGTGAAAGAA 58.825 34.615 0.00 0.00 0.00 2.52
29 30 7.669722 AGGTGGCATAGAATTAAGTGAAAGAAA 59.330 33.333 0.00 0.00 0.00 2.52
30 31 8.303876 GGTGGCATAGAATTAAGTGAAAGAAAA 58.696 33.333 0.00 0.00 0.00 2.29
31 32 9.860898 GTGGCATAGAATTAAGTGAAAGAAAAT 57.139 29.630 0.00 0.00 0.00 1.82
92 93 6.716934 ATACTAGTATGTGTCTTGTCTGGG 57.283 41.667 14.71 0.00 0.00 4.45
93 94 4.673968 ACTAGTATGTGTCTTGTCTGGGA 58.326 43.478 0.00 0.00 0.00 4.37
94 95 5.084519 ACTAGTATGTGTCTTGTCTGGGAA 58.915 41.667 0.00 0.00 0.00 3.97
95 96 5.721960 ACTAGTATGTGTCTTGTCTGGGAAT 59.278 40.000 0.00 0.00 0.00 3.01
96 97 6.895756 ACTAGTATGTGTCTTGTCTGGGAATA 59.104 38.462 0.00 0.00 0.00 1.75
97 98 6.620877 AGTATGTGTCTTGTCTGGGAATAA 57.379 37.500 0.00 0.00 0.00 1.40
98 99 7.016153 AGTATGTGTCTTGTCTGGGAATAAA 57.984 36.000 0.00 0.00 0.00 1.40
99 100 7.633789 AGTATGTGTCTTGTCTGGGAATAAAT 58.366 34.615 0.00 0.00 0.00 1.40
100 101 8.768397 AGTATGTGTCTTGTCTGGGAATAAATA 58.232 33.333 0.00 0.00 0.00 1.40
101 102 9.391006 GTATGTGTCTTGTCTGGGAATAAATAA 57.609 33.333 0.00 0.00 0.00 1.40
102 103 7.921786 TGTGTCTTGTCTGGGAATAAATAAG 57.078 36.000 0.00 0.00 0.00 1.73
103 104 7.685481 TGTGTCTTGTCTGGGAATAAATAAGA 58.315 34.615 0.00 0.00 0.00 2.10
104 105 8.328758 TGTGTCTTGTCTGGGAATAAATAAGAT 58.671 33.333 0.00 0.00 0.00 2.40
105 106 8.831550 GTGTCTTGTCTGGGAATAAATAAGATC 58.168 37.037 0.00 0.00 0.00 2.75
106 107 8.548025 TGTCTTGTCTGGGAATAAATAAGATCA 58.452 33.333 0.00 0.00 0.00 2.92
107 108 9.566432 GTCTTGTCTGGGAATAAATAAGATCAT 57.434 33.333 0.00 0.00 0.00 2.45
108 109 9.784531 TCTTGTCTGGGAATAAATAAGATCATC 57.215 33.333 0.00 0.00 0.00 2.92
109 110 9.790344 CTTGTCTGGGAATAAATAAGATCATCT 57.210 33.333 0.00 0.00 0.00 2.90
110 111 9.565090 TTGTCTGGGAATAAATAAGATCATCTG 57.435 33.333 0.00 0.00 0.00 2.90
111 112 8.937835 TGTCTGGGAATAAATAAGATCATCTGA 58.062 33.333 0.00 0.00 0.00 3.27
112 113 9.434420 GTCTGGGAATAAATAAGATCATCTGAG 57.566 37.037 0.00 0.00 0.00 3.35
113 114 9.384849 TCTGGGAATAAATAAGATCATCTGAGA 57.615 33.333 0.00 0.00 0.00 3.27
127 128 9.905713 AGATCATCTGAGATACTAATCTACTCC 57.094 37.037 0.00 0.00 42.73 3.85
128 129 9.120538 GATCATCTGAGATACTAATCTACTCCC 57.879 40.741 0.00 0.00 42.73 4.30
129 130 8.225863 TCATCTGAGATACTAATCTACTCCCT 57.774 38.462 0.00 0.00 42.73 4.20
130 131 8.325787 TCATCTGAGATACTAATCTACTCCCTC 58.674 40.741 0.00 0.00 42.73 4.30
131 132 7.023171 TCTGAGATACTAATCTACTCCCTCC 57.977 44.000 0.00 0.00 42.73 4.30
132 133 5.806818 TGAGATACTAATCTACTCCCTCCG 58.193 45.833 0.00 0.00 42.73 4.63
133 134 5.310068 TGAGATACTAATCTACTCCCTCCGT 59.690 44.000 0.00 0.00 42.73 4.69
134 135 6.183361 TGAGATACTAATCTACTCCCTCCGTT 60.183 42.308 0.00 0.00 42.73 4.44
135 136 6.240145 AGATACTAATCTACTCCCTCCGTTC 58.760 44.000 0.00 0.00 40.82 3.95
136 137 3.564264 ACTAATCTACTCCCTCCGTTCC 58.436 50.000 0.00 0.00 0.00 3.62
137 138 2.544844 AATCTACTCCCTCCGTTCCA 57.455 50.000 0.00 0.00 0.00 3.53
138 139 2.544844 ATCTACTCCCTCCGTTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
139 140 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
140 141 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
141 142 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
142 143 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
143 144 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
144 145 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
145 146 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
146 147 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
147 148 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
148 149 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
149 150 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
150 151 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
151 152 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
152 153 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
153 154 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
154 155 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
155 156 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
156 157 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
157 158 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
158 159 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
159 160 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
160 161 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
161 162 6.849588 AATTACTCGTCGTGGTTTTAGTTT 57.150 33.333 0.00 0.00 0.00 2.66
162 163 7.945033 AATTACTCGTCGTGGTTTTAGTTTA 57.055 32.000 0.00 0.00 0.00 2.01
163 164 7.945033 ATTACTCGTCGTGGTTTTAGTTTAA 57.055 32.000 0.00 0.00 0.00 1.52
164 165 7.945033 TTACTCGTCGTGGTTTTAGTTTAAT 57.055 32.000 0.00 0.00 0.00 1.40
165 166 6.849588 ACTCGTCGTGGTTTTAGTTTAATT 57.150 33.333 0.00 0.00 0.00 1.40
166 167 7.250445 ACTCGTCGTGGTTTTAGTTTAATTT 57.750 32.000 0.00 0.00 0.00 1.82
167 168 7.696755 ACTCGTCGTGGTTTTAGTTTAATTTT 58.303 30.769 0.00 0.00 0.00 1.82
168 169 7.641020 ACTCGTCGTGGTTTTAGTTTAATTTTG 59.359 33.333 0.00 0.00 0.00 2.44
169 170 7.692088 TCGTCGTGGTTTTAGTTTAATTTTGA 58.308 30.769 0.00 0.00 0.00 2.69
170 171 8.180267 TCGTCGTGGTTTTAGTTTAATTTTGAA 58.820 29.630 0.00 0.00 0.00 2.69
171 172 8.254470 CGTCGTGGTTTTAGTTTAATTTTGAAC 58.746 33.333 0.00 0.00 0.00 3.18
172 173 9.292846 GTCGTGGTTTTAGTTTAATTTTGAACT 57.707 29.630 5.87 5.87 39.80 3.01
173 174 9.291664 TCGTGGTTTTAGTTTAATTTTGAACTG 57.708 29.630 9.88 0.00 37.53 3.16
174 175 9.291664 CGTGGTTTTAGTTTAATTTTGAACTGA 57.708 29.630 9.88 0.66 37.53 3.41
181 182 7.749539 AGTTTAATTTTGAACTGAAACCACG 57.250 32.000 0.23 0.00 35.92 4.94
182 183 7.540299 AGTTTAATTTTGAACTGAAACCACGA 58.460 30.769 0.23 0.00 35.92 4.35
183 184 7.486870 AGTTTAATTTTGAACTGAAACCACGAC 59.513 33.333 0.23 0.00 35.92 4.34
184 185 3.392769 TTTTGAACTGAAACCACGACG 57.607 42.857 0.00 0.00 0.00 5.12
185 186 2.296831 TTGAACTGAAACCACGACGA 57.703 45.000 0.00 0.00 0.00 4.20
186 187 1.847818 TGAACTGAAACCACGACGAG 58.152 50.000 0.00 0.00 0.00 4.18
187 188 1.135527 TGAACTGAAACCACGACGAGT 59.864 47.619 0.00 0.00 0.00 4.18
188 189 2.358582 TGAACTGAAACCACGACGAGTA 59.641 45.455 0.00 0.00 0.00 2.59
189 190 3.181488 TGAACTGAAACCACGACGAGTAA 60.181 43.478 0.00 0.00 0.00 2.24
190 191 3.655276 ACTGAAACCACGACGAGTAAT 57.345 42.857 0.00 0.00 0.00 1.89
191 192 3.986277 ACTGAAACCACGACGAGTAATT 58.014 40.909 0.00 0.00 0.00 1.40
192 193 4.374399 ACTGAAACCACGACGAGTAATTT 58.626 39.130 0.00 0.00 0.00 1.82
193 194 5.531634 ACTGAAACCACGACGAGTAATTTA 58.468 37.500 0.00 0.00 0.00 1.40
194 195 5.632347 ACTGAAACCACGACGAGTAATTTAG 59.368 40.000 0.00 0.48 0.00 1.85
195 196 5.771469 TGAAACCACGACGAGTAATTTAGA 58.229 37.500 0.00 0.00 0.00 2.10
196 197 6.215121 TGAAACCACGACGAGTAATTTAGAA 58.785 36.000 0.00 0.00 0.00 2.10
197 198 6.869913 TGAAACCACGACGAGTAATTTAGAAT 59.130 34.615 0.00 0.00 0.00 2.40
198 199 6.642683 AACCACGACGAGTAATTTAGAATG 57.357 37.500 0.00 0.00 0.00 2.67
199 200 5.957798 ACCACGACGAGTAATTTAGAATGA 58.042 37.500 0.00 0.00 0.00 2.57
200 201 6.392354 ACCACGACGAGTAATTTAGAATGAA 58.608 36.000 0.00 0.00 0.00 2.57
201 202 6.530534 ACCACGACGAGTAATTTAGAATGAAG 59.469 38.462 0.00 0.00 0.00 3.02
202 203 6.019801 CCACGACGAGTAATTTAGAATGAAGG 60.020 42.308 0.00 0.00 0.00 3.46
203 204 6.019801 CACGACGAGTAATTTAGAATGAAGGG 60.020 42.308 0.00 0.00 0.00 3.95
204 205 6.127535 ACGACGAGTAATTTAGAATGAAGGGA 60.128 38.462 0.00 0.00 0.00 4.20
205 206 6.418226 CGACGAGTAATTTAGAATGAAGGGAG 59.582 42.308 0.00 0.00 0.00 4.30
206 207 7.184067 ACGAGTAATTTAGAATGAAGGGAGT 57.816 36.000 0.00 0.00 0.00 3.85
207 208 8.302515 ACGAGTAATTTAGAATGAAGGGAGTA 57.697 34.615 0.00 0.00 0.00 2.59
208 209 8.925338 ACGAGTAATTTAGAATGAAGGGAGTAT 58.075 33.333 0.00 0.00 0.00 2.12
219 220 9.326489 AGAATGAAGGGAGTATAATACTATGCA 57.674 33.333 0.00 0.00 39.59 3.96
222 223 8.664669 TGAAGGGAGTATAATACTATGCATCA 57.335 34.615 0.19 0.00 39.59 3.07
223 224 9.100197 TGAAGGGAGTATAATACTATGCATCAA 57.900 33.333 0.19 0.00 39.59 2.57
224 225 9.944376 GAAGGGAGTATAATACTATGCATCAAA 57.056 33.333 0.19 0.00 39.59 2.69
235 236 8.904099 ATACTATGCATCAAAAAGGTAGTACC 57.096 34.615 11.73 11.73 38.99 3.34
236 237 6.717289 ACTATGCATCAAAAAGGTAGTACCA 58.283 36.000 21.49 0.00 41.95 3.25
237 238 7.346471 ACTATGCATCAAAAAGGTAGTACCAT 58.654 34.615 21.49 6.68 41.95 3.55
238 239 8.491134 ACTATGCATCAAAAAGGTAGTACCATA 58.509 33.333 21.49 5.49 41.95 2.74
239 240 9.507329 CTATGCATCAAAAAGGTAGTACCATAT 57.493 33.333 21.49 4.38 41.95 1.78
241 242 8.671384 TGCATCAAAAAGGTAGTACCATATAC 57.329 34.615 21.49 2.54 41.95 1.47
242 243 8.491134 TGCATCAAAAAGGTAGTACCATATACT 58.509 33.333 21.49 0.00 41.95 2.12
243 244 9.991906 GCATCAAAAAGGTAGTACCATATACTA 57.008 33.333 21.49 1.78 41.95 1.82
272 273 8.913487 TCATATGCATGATTCTAACTTGTGAT 57.087 30.769 10.16 0.00 36.22 3.06
277 278 8.648557 TGCATGATTCTAACTTGTGATACTAC 57.351 34.615 0.00 0.00 0.00 2.73
278 279 7.435192 TGCATGATTCTAACTTGTGATACTACG 59.565 37.037 0.00 0.00 0.00 3.51
279 280 7.096023 GCATGATTCTAACTTGTGATACTACGG 60.096 40.741 0.00 0.00 0.00 4.02
280 281 7.634671 TGATTCTAACTTGTGATACTACGGA 57.365 36.000 0.00 0.00 0.00 4.69
281 282 8.058667 TGATTCTAACTTGTGATACTACGGAA 57.941 34.615 0.00 0.00 0.00 4.30
282 283 8.525316 TGATTCTAACTTGTGATACTACGGAAA 58.475 33.333 0.00 0.00 0.00 3.13
283 284 9.362539 GATTCTAACTTGTGATACTACGGAAAA 57.637 33.333 0.00 0.00 0.00 2.29
284 285 9.886132 ATTCTAACTTGTGATACTACGGAAAAT 57.114 29.630 0.00 0.00 0.00 1.82
286 287 9.793252 TCTAACTTGTGATACTACGGAAAATAC 57.207 33.333 0.00 0.00 0.00 1.89
287 288 9.577110 CTAACTTGTGATACTACGGAAAATACA 57.423 33.333 0.00 0.00 0.00 2.29
288 289 7.823149 ACTTGTGATACTACGGAAAATACAC 57.177 36.000 0.00 0.00 0.00 2.90
289 290 7.380536 ACTTGTGATACTACGGAAAATACACA 58.619 34.615 0.00 0.00 34.69 3.72
290 291 7.544566 ACTTGTGATACTACGGAAAATACACAG 59.455 37.037 0.00 0.00 37.13 3.66
291 292 6.334989 TGTGATACTACGGAAAATACACAGG 58.665 40.000 0.00 0.00 33.10 4.00
292 293 6.153170 TGTGATACTACGGAAAATACACAGGA 59.847 38.462 0.00 0.00 33.10 3.86
293 294 6.696148 GTGATACTACGGAAAATACACAGGAG 59.304 42.308 0.00 0.00 0.00 3.69
294 295 3.858247 ACTACGGAAAATACACAGGAGC 58.142 45.455 0.00 0.00 0.00 4.70
295 296 3.514309 ACTACGGAAAATACACAGGAGCT 59.486 43.478 0.00 0.00 0.00 4.09
296 297 2.973945 ACGGAAAATACACAGGAGCTC 58.026 47.619 4.71 4.71 0.00 4.09
297 298 2.301870 ACGGAAAATACACAGGAGCTCA 59.698 45.455 17.19 0.00 0.00 4.26
298 299 3.055094 ACGGAAAATACACAGGAGCTCAT 60.055 43.478 17.19 5.25 0.00 2.90
299 300 3.310774 CGGAAAATACACAGGAGCTCATG 59.689 47.826 25.90 25.90 0.00 3.07
300 301 3.629398 GGAAAATACACAGGAGCTCATGG 59.371 47.826 29.98 20.92 30.95 3.66
301 302 3.287867 AAATACACAGGAGCTCATGGG 57.712 47.619 28.08 28.08 37.05 4.00
302 303 1.885049 ATACACAGGAGCTCATGGGT 58.115 50.000 35.50 35.50 46.76 4.51
303 304 0.904649 TACACAGGAGCTCATGGGTG 59.095 55.000 38.84 26.82 44.65 4.61
304 305 1.748122 CACAGGAGCTCATGGGTGC 60.748 63.158 29.98 4.55 30.95 5.01
305 306 1.922369 ACAGGAGCTCATGGGTGCT 60.922 57.895 29.98 7.95 45.88 4.40
319 320 2.868253 GTGCTCCACACCCCAATAC 58.132 57.895 0.00 0.00 44.02 1.89
320 321 1.024579 GTGCTCCACACCCCAATACG 61.025 60.000 0.00 0.00 44.02 3.06
321 322 1.195442 TGCTCCACACCCCAATACGA 61.195 55.000 0.00 0.00 0.00 3.43
322 323 0.035820 GCTCCACACCCCAATACGAA 60.036 55.000 0.00 0.00 0.00 3.85
323 324 1.408266 GCTCCACACCCCAATACGAAT 60.408 52.381 0.00 0.00 0.00 3.34
324 325 2.158871 GCTCCACACCCCAATACGAATA 60.159 50.000 0.00 0.00 0.00 1.75
325 326 3.496160 GCTCCACACCCCAATACGAATAT 60.496 47.826 0.00 0.00 0.00 1.28
326 327 4.714632 CTCCACACCCCAATACGAATATT 58.285 43.478 0.00 0.00 0.00 1.28
327 328 5.743714 GCTCCACACCCCAATACGAATATTA 60.744 44.000 0.00 0.00 29.44 0.98
328 329 6.249911 TCCACACCCCAATACGAATATTAA 57.750 37.500 0.00 0.00 29.44 1.40
329 330 6.843752 TCCACACCCCAATACGAATATTAAT 58.156 36.000 0.00 0.00 29.44 1.40
330 331 6.938030 TCCACACCCCAATACGAATATTAATC 59.062 38.462 0.00 0.00 29.44 1.75
331 332 6.712998 CCACACCCCAATACGAATATTAATCA 59.287 38.462 0.00 0.00 29.44 2.57
332 333 7.393234 CCACACCCCAATACGAATATTAATCAT 59.607 37.037 0.00 0.00 29.44 2.45
333 334 9.443323 CACACCCCAATACGAATATTAATCATA 57.557 33.333 0.00 0.00 29.44 2.15
366 367 9.500785 ACCAAAAGAATTCAAAAAGTTCTGAAA 57.499 25.926 8.44 0.00 35.31 2.69
372 373 9.112725 AGAATTCAAAAAGTTCTGAAATTTGGG 57.887 29.630 15.49 11.07 35.31 4.12
373 374 7.806409 ATTCAAAAAGTTCTGAAATTTGGGG 57.194 32.000 15.49 8.98 35.31 4.96
374 375 6.552445 TCAAAAAGTTCTGAAATTTGGGGA 57.448 33.333 15.49 10.81 33.08 4.81
375 376 7.135591 TCAAAAAGTTCTGAAATTTGGGGAT 57.864 32.000 15.49 0.00 33.08 3.85
376 377 8.256356 TCAAAAAGTTCTGAAATTTGGGGATA 57.744 30.769 15.49 0.00 33.08 2.59
377 378 8.879227 TCAAAAAGTTCTGAAATTTGGGGATAT 58.121 29.630 15.49 0.00 33.08 1.63
378 379 8.938906 CAAAAAGTTCTGAAATTTGGGGATATG 58.061 33.333 15.49 4.67 0.00 1.78
379 380 8.434589 AAAAGTTCTGAAATTTGGGGATATGA 57.565 30.769 15.49 0.00 0.00 2.15
380 381 8.434589 AAAGTTCTGAAATTTGGGGATATGAA 57.565 30.769 14.22 0.00 0.00 2.57
381 382 8.434589 AAGTTCTGAAATTTGGGGATATGAAA 57.565 30.769 0.00 0.00 0.00 2.69
382 383 7.840931 AGTTCTGAAATTTGGGGATATGAAAC 58.159 34.615 0.00 0.00 0.00 2.78
383 384 7.454380 AGTTCTGAAATTTGGGGATATGAAACA 59.546 33.333 0.00 0.00 0.00 2.83
384 385 7.976414 TCTGAAATTTGGGGATATGAAACAT 57.024 32.000 0.00 0.00 0.00 2.71
385 386 7.784037 TCTGAAATTTGGGGATATGAAACATG 58.216 34.615 0.00 0.00 0.00 3.21
386 387 6.887013 TGAAATTTGGGGATATGAAACATGG 58.113 36.000 0.00 0.00 0.00 3.66
387 388 6.671340 TGAAATTTGGGGATATGAAACATGGA 59.329 34.615 0.00 0.00 0.00 3.41
388 389 7.347748 TGAAATTTGGGGATATGAAACATGGAT 59.652 33.333 0.00 0.00 0.00 3.41
389 390 7.695074 AATTTGGGGATATGAAACATGGATT 57.305 32.000 0.00 0.00 0.00 3.01
390 391 6.729690 TTTGGGGATATGAAACATGGATTC 57.270 37.500 0.00 1.96 0.00 2.52
391 392 5.668135 TGGGGATATGAAACATGGATTCT 57.332 39.130 12.82 4.02 0.00 2.40
392 393 5.634118 TGGGGATATGAAACATGGATTCTC 58.366 41.667 12.82 4.65 0.00 2.87
393 394 5.134169 TGGGGATATGAAACATGGATTCTCA 59.866 40.000 12.82 2.13 0.00 3.27
394 395 6.070656 GGGGATATGAAACATGGATTCTCAA 58.929 40.000 12.82 2.08 0.00 3.02
395 396 6.723052 GGGGATATGAAACATGGATTCTCAAT 59.277 38.462 12.82 5.71 0.00 2.57
396 397 7.094032 GGGGATATGAAACATGGATTCTCAATC 60.094 40.741 12.82 11.70 37.17 2.67
397 398 7.668886 GGGATATGAAACATGGATTCTCAATCT 59.331 37.037 12.82 0.00 38.01 2.40
398 399 9.730705 GGATATGAAACATGGATTCTCAATCTA 57.269 33.333 12.82 0.00 38.01 1.98
401 402 8.674263 ATGAAACATGGATTCTCAATCTACTC 57.326 34.615 12.82 0.00 38.01 2.59
402 403 7.050377 TGAAACATGGATTCTCAATCTACTCC 58.950 38.462 12.82 0.00 38.01 3.85
403 404 6.821616 AACATGGATTCTCAATCTACTCCT 57.178 37.500 0.00 0.00 38.01 3.69
404 405 6.172136 ACATGGATTCTCAATCTACTCCTG 57.828 41.667 0.00 0.00 38.01 3.86
405 406 5.664908 ACATGGATTCTCAATCTACTCCTGT 59.335 40.000 0.00 0.00 38.01 4.00
406 407 5.604758 TGGATTCTCAATCTACTCCTGTG 57.395 43.478 0.00 0.00 38.01 3.66
407 408 5.026121 TGGATTCTCAATCTACTCCTGTGT 58.974 41.667 0.00 0.00 38.01 3.72
408 409 5.105187 TGGATTCTCAATCTACTCCTGTGTG 60.105 44.000 0.00 0.00 38.01 3.82
409 410 5.127845 GGATTCTCAATCTACTCCTGTGTGA 59.872 44.000 0.00 0.00 38.01 3.58
410 411 6.351371 GGATTCTCAATCTACTCCTGTGTGAA 60.351 42.308 0.00 0.00 38.01 3.18
411 412 6.419484 TTCTCAATCTACTCCTGTGTGAAA 57.581 37.500 0.00 0.00 0.00 2.69
412 413 6.611613 TCTCAATCTACTCCTGTGTGAAAT 57.388 37.500 0.00 0.00 0.00 2.17
413 414 7.009179 TCTCAATCTACTCCTGTGTGAAATT 57.991 36.000 0.00 0.00 0.00 1.82
414 415 7.453393 TCTCAATCTACTCCTGTGTGAAATTT 58.547 34.615 0.00 0.00 0.00 1.82
415 416 7.604164 TCTCAATCTACTCCTGTGTGAAATTTC 59.396 37.037 11.41 11.41 0.00 2.17
416 417 6.368791 TCAATCTACTCCTGTGTGAAATTTCG 59.631 38.462 13.34 0.00 0.00 3.46
417 418 5.209818 TCTACTCCTGTGTGAAATTTCGT 57.790 39.130 13.34 5.23 0.00 3.85
418 419 4.988540 TCTACTCCTGTGTGAAATTTCGTG 59.011 41.667 13.34 2.16 0.00 4.35
419 420 2.878406 ACTCCTGTGTGAAATTTCGTGG 59.122 45.455 13.34 10.10 0.00 4.94
420 421 3.138304 CTCCTGTGTGAAATTTCGTGGA 58.862 45.455 13.34 13.19 0.00 4.02
421 422 3.546724 TCCTGTGTGAAATTTCGTGGAA 58.453 40.909 13.34 0.00 0.00 3.53
422 423 3.948473 TCCTGTGTGAAATTTCGTGGAAA 59.052 39.130 13.34 0.00 35.94 3.13
423 424 4.399618 TCCTGTGTGAAATTTCGTGGAAAA 59.600 37.500 13.34 0.00 35.11 2.29
424 425 5.105716 TCCTGTGTGAAATTTCGTGGAAAAA 60.106 36.000 13.34 0.00 35.11 1.94
425 426 5.752955 CCTGTGTGAAATTTCGTGGAAAAAT 59.247 36.000 13.34 0.00 35.11 1.82
426 427 6.920758 CCTGTGTGAAATTTCGTGGAAAAATA 59.079 34.615 13.34 0.00 35.11 1.40
427 428 7.096230 CCTGTGTGAAATTTCGTGGAAAAATAC 60.096 37.037 13.34 2.88 35.11 1.89
428 429 6.697892 TGTGTGAAATTTCGTGGAAAAATACC 59.302 34.615 13.34 0.00 35.11 2.73
429 430 6.697892 GTGTGAAATTTCGTGGAAAAATACCA 59.302 34.615 13.34 0.00 35.11 3.25
430 431 6.920758 TGTGAAATTTCGTGGAAAAATACCAG 59.079 34.615 13.34 0.00 38.14 4.00
431 432 6.364976 GTGAAATTTCGTGGAAAAATACCAGG 59.635 38.462 13.34 0.00 42.40 4.45
432 433 6.265649 TGAAATTTCGTGGAAAAATACCAGGA 59.734 34.615 13.34 0.00 46.06 3.86
436 437 3.499157 TCGTGGAAAAATACCAGGAAACG 59.501 43.478 0.00 0.00 45.21 3.60
437 438 3.251487 CGTGGAAAAATACCAGGAAACGT 59.749 43.478 0.00 0.00 43.30 3.99
438 439 4.451774 CGTGGAAAAATACCAGGAAACGTA 59.548 41.667 0.00 0.00 43.30 3.57
439 440 5.122711 CGTGGAAAAATACCAGGAAACGTAT 59.877 40.000 0.00 0.00 43.30 3.06
440 441 6.549061 GTGGAAAAATACCAGGAAACGTATC 58.451 40.000 0.00 0.00 38.14 2.24
441 442 6.373495 GTGGAAAAATACCAGGAAACGTATCT 59.627 38.462 0.00 0.00 38.14 1.98
442 443 6.373216 TGGAAAAATACCAGGAAACGTATCTG 59.627 38.462 0.00 0.00 33.22 2.90
443 444 6.373495 GGAAAAATACCAGGAAACGTATCTGT 59.627 38.462 0.00 0.00 0.00 3.41
444 445 6.737254 AAAATACCAGGAAACGTATCTGTG 57.263 37.500 0.00 6.08 0.00 3.66
445 446 2.762535 ACCAGGAAACGTATCTGTGG 57.237 50.000 0.00 7.02 32.71 4.17
446 447 1.338769 ACCAGGAAACGTATCTGTGGC 60.339 52.381 0.00 0.00 30.78 5.01
447 448 0.999406 CAGGAAACGTATCTGTGGCG 59.001 55.000 0.00 0.00 0.00 5.69
448 449 0.892755 AGGAAACGTATCTGTGGCGA 59.107 50.000 0.00 0.00 0.00 5.54
449 450 1.274167 AGGAAACGTATCTGTGGCGAA 59.726 47.619 0.00 0.00 0.00 4.70
450 451 2.070783 GGAAACGTATCTGTGGCGAAA 58.929 47.619 0.00 0.00 0.00 3.46
451 452 2.093783 GGAAACGTATCTGTGGCGAAAG 59.906 50.000 0.00 0.00 0.00 2.62
452 453 2.736144 AACGTATCTGTGGCGAAAGA 57.264 45.000 0.00 0.00 0.00 2.52
453 454 2.736144 ACGTATCTGTGGCGAAAGAA 57.264 45.000 0.00 0.00 0.00 2.52
454 455 3.034721 ACGTATCTGTGGCGAAAGAAA 57.965 42.857 0.00 0.00 0.00 2.52
455 456 3.596214 ACGTATCTGTGGCGAAAGAAAT 58.404 40.909 0.00 0.00 0.00 2.17
456 457 4.751060 ACGTATCTGTGGCGAAAGAAATA 58.249 39.130 0.00 0.00 0.00 1.40
457 458 5.357257 ACGTATCTGTGGCGAAAGAAATAT 58.643 37.500 0.00 0.00 0.00 1.28
458 459 5.815740 ACGTATCTGTGGCGAAAGAAATATT 59.184 36.000 0.00 0.00 0.00 1.28
459 460 6.129393 CGTATCTGTGGCGAAAGAAATATTG 58.871 40.000 0.00 0.00 0.00 1.90
460 461 6.238103 CGTATCTGTGGCGAAAGAAATATTGT 60.238 38.462 0.00 0.00 0.00 2.71
461 462 5.957842 TCTGTGGCGAAAGAAATATTGTT 57.042 34.783 0.00 0.00 0.00 2.83
462 463 5.938322 TCTGTGGCGAAAGAAATATTGTTC 58.062 37.500 0.00 0.00 0.00 3.18
463 464 4.717991 TGTGGCGAAAGAAATATTGTTCG 58.282 39.130 18.05 18.05 44.29 3.95
464 465 4.452795 TGTGGCGAAAGAAATATTGTTCGA 59.547 37.500 23.08 8.77 44.24 3.71
465 466 5.049336 TGTGGCGAAAGAAATATTGTTCGAA 60.049 36.000 23.08 13.02 44.24 3.71
466 467 5.283012 GTGGCGAAAGAAATATTGTTCGAAC 59.717 40.000 21.42 21.42 44.24 3.95
467 468 5.049336 TGGCGAAAGAAATATTGTTCGAACA 60.049 36.000 26.53 26.53 44.24 3.18
481 482 7.834068 TTGTTCGAACAAAAATCAATCCAAA 57.166 28.000 34.99 12.59 45.17 3.28
482 483 7.227992 TGTTCGAACAAAAATCAATCCAAAC 57.772 32.000 27.94 0.00 35.67 2.93
483 484 6.813649 TGTTCGAACAAAAATCAATCCAAACA 59.186 30.769 27.94 0.00 35.67 2.83
484 485 7.009999 TGTTCGAACAAAAATCAATCCAAACAG 59.990 33.333 27.94 0.00 35.67 3.16
485 486 6.568869 TCGAACAAAAATCAATCCAAACAGT 58.431 32.000 0.00 0.00 0.00 3.55
486 487 7.038659 TCGAACAAAAATCAATCCAAACAGTT 58.961 30.769 0.00 0.00 0.00 3.16
487 488 7.547370 TCGAACAAAAATCAATCCAAACAGTTT 59.453 29.630 0.00 0.00 0.00 2.66
488 489 8.174422 CGAACAAAAATCAATCCAAACAGTTTT 58.826 29.630 0.00 0.00 0.00 2.43
489 490 9.838975 GAACAAAAATCAATCCAAACAGTTTTT 57.161 25.926 0.00 0.00 0.00 1.94
518 519 8.141835 ACACATAGGAATTTTTGTCTTTTTGC 57.858 30.769 0.00 0.00 0.00 3.68
519 520 7.226523 ACACATAGGAATTTTTGTCTTTTTGCC 59.773 33.333 0.00 0.00 0.00 4.52
520 521 6.710295 ACATAGGAATTTTTGTCTTTTTGCCC 59.290 34.615 0.00 0.00 0.00 5.36
521 522 4.126437 AGGAATTTTTGTCTTTTTGCCCG 58.874 39.130 0.00 0.00 0.00 6.13
522 523 4.123506 GGAATTTTTGTCTTTTTGCCCGA 58.876 39.130 0.00 0.00 0.00 5.14
523 524 4.572795 GGAATTTTTGTCTTTTTGCCCGAA 59.427 37.500 0.00 0.00 0.00 4.30
524 525 5.238432 GGAATTTTTGTCTTTTTGCCCGAAT 59.762 36.000 0.00 0.00 0.00 3.34
525 526 6.425417 GGAATTTTTGTCTTTTTGCCCGAATA 59.575 34.615 0.00 0.00 0.00 1.75
526 527 6.779115 ATTTTTGTCTTTTTGCCCGAATAC 57.221 33.333 0.00 0.00 0.00 1.89
527 528 3.926821 TTGTCTTTTTGCCCGAATACC 57.073 42.857 0.00 0.00 0.00 2.73
528 529 3.149005 TGTCTTTTTGCCCGAATACCT 57.851 42.857 0.00 0.00 0.00 3.08
529 530 3.492337 TGTCTTTTTGCCCGAATACCTT 58.508 40.909 0.00 0.00 0.00 3.50
530 531 3.892588 TGTCTTTTTGCCCGAATACCTTT 59.107 39.130 0.00 0.00 0.00 3.11
531 532 4.342665 TGTCTTTTTGCCCGAATACCTTTT 59.657 37.500 0.00 0.00 0.00 2.27
532 533 4.921515 GTCTTTTTGCCCGAATACCTTTTC 59.078 41.667 0.00 0.00 0.00 2.29
533 534 3.945981 TTTTGCCCGAATACCTTTTCC 57.054 42.857 0.00 0.00 0.00 3.13
534 535 2.891191 TTGCCCGAATACCTTTTCCT 57.109 45.000 0.00 0.00 0.00 3.36
535 536 2.122783 TGCCCGAATACCTTTTCCTG 57.877 50.000 0.00 0.00 0.00 3.86
536 537 1.340600 TGCCCGAATACCTTTTCCTGG 60.341 52.381 0.00 0.00 0.00 4.45
537 538 1.340697 GCCCGAATACCTTTTCCTGGT 60.341 52.381 0.00 0.00 41.28 4.00
538 539 2.092807 GCCCGAATACCTTTTCCTGGTA 60.093 50.000 0.00 0.00 43.28 3.25
565 566 6.639671 TTTTCACAAAATTTCACACGGAAG 57.360 33.333 0.00 0.00 36.72 3.46
576 577 4.009015 ACGGAAGTAGACGGGACC 57.991 61.111 0.00 0.00 46.88 4.46
577 578 1.680314 ACGGAAGTAGACGGGACCC 60.680 63.158 0.00 0.00 46.88 4.46
578 579 2.421399 CGGAAGTAGACGGGACCCC 61.421 68.421 4.46 0.00 0.00 4.95
579 580 1.305549 GGAAGTAGACGGGACCCCA 60.306 63.158 4.46 0.00 35.37 4.96
580 581 1.328430 GGAAGTAGACGGGACCCCAG 61.328 65.000 4.46 0.00 35.37 4.45
581 582 0.324091 GAAGTAGACGGGACCCCAGA 60.324 60.000 4.46 0.00 35.37 3.86
582 583 0.338814 AAGTAGACGGGACCCCAGAT 59.661 55.000 4.46 0.00 35.37 2.90
583 584 0.338814 AGTAGACGGGACCCCAGATT 59.661 55.000 4.46 0.00 35.37 2.40
584 585 1.201424 GTAGACGGGACCCCAGATTT 58.799 55.000 4.46 0.00 35.37 2.17
585 586 1.134491 GTAGACGGGACCCCAGATTTG 60.134 57.143 4.46 0.00 35.37 2.32
586 587 0.546747 AGACGGGACCCCAGATTTGA 60.547 55.000 4.46 0.00 35.37 2.69
587 588 0.546598 GACGGGACCCCAGATTTGAT 59.453 55.000 4.46 0.00 35.37 2.57
588 589 1.766496 GACGGGACCCCAGATTTGATA 59.234 52.381 4.46 0.00 35.37 2.15
589 590 2.372172 GACGGGACCCCAGATTTGATAT 59.628 50.000 4.46 0.00 35.37 1.63
590 591 2.372172 ACGGGACCCCAGATTTGATATC 59.628 50.000 4.46 0.00 35.37 1.63
591 592 2.290323 CGGGACCCCAGATTTGATATCC 60.290 54.545 4.46 0.00 35.37 2.59
592 593 2.041755 GGGACCCCAGATTTGATATCCC 59.958 54.545 0.00 0.00 37.96 3.85
593 594 2.716424 GGACCCCAGATTTGATATCCCA 59.284 50.000 0.00 0.00 0.00 4.37
594 595 3.140144 GGACCCCAGATTTGATATCCCAA 59.860 47.826 0.00 0.00 0.00 4.12
595 596 4.387437 GGACCCCAGATTTGATATCCCAAA 60.387 45.833 0.00 0.00 39.93 3.28
596 597 5.208121 GACCCCAGATTTGATATCCCAAAA 58.792 41.667 0.00 0.00 39.20 2.44
597 598 5.791749 ACCCCAGATTTGATATCCCAAAAT 58.208 37.500 0.00 0.00 39.20 1.82
598 599 5.840693 ACCCCAGATTTGATATCCCAAAATC 59.159 40.000 14.69 14.69 39.20 2.17
599 600 6.080009 CCCCAGATTTGATATCCCAAAATCT 58.920 40.000 17.56 17.56 39.20 2.40
600 601 6.210185 CCCCAGATTTGATATCCCAAAATCTC 59.790 42.308 19.30 4.59 39.20 2.75
601 602 6.779049 CCCAGATTTGATATCCCAAAATCTCA 59.221 38.462 19.30 0.00 39.20 3.27
602 603 7.288389 CCCAGATTTGATATCCCAAAATCTCAA 59.712 37.037 19.30 0.00 39.20 3.02
603 604 8.698210 CCAGATTTGATATCCCAAAATCTCAAA 58.302 33.333 19.30 5.32 39.20 2.69
647 648 9.549509 TCGGTATTCTTTTGAATTTAATGTTCG 57.450 29.630 0.00 0.00 46.12 3.95
648 649 9.337091 CGGTATTCTTTTGAATTTAATGTTCGT 57.663 29.630 0.00 0.00 46.12 3.85
655 656 9.730420 CTTTTGAATTTAATGTTCGTATAGGGG 57.270 33.333 0.00 0.00 0.00 4.79
656 657 8.810990 TTTGAATTTAATGTTCGTATAGGGGT 57.189 30.769 0.00 0.00 0.00 4.95
657 658 7.795482 TGAATTTAATGTTCGTATAGGGGTG 57.205 36.000 0.00 0.00 0.00 4.61
658 659 7.340256 TGAATTTAATGTTCGTATAGGGGTGT 58.660 34.615 0.00 0.00 0.00 4.16
659 660 7.281324 TGAATTTAATGTTCGTATAGGGGTGTG 59.719 37.037 0.00 0.00 0.00 3.82
660 661 3.553828 AATGTTCGTATAGGGGTGTGG 57.446 47.619 0.00 0.00 0.00 4.17
661 662 2.234896 TGTTCGTATAGGGGTGTGGA 57.765 50.000 0.00 0.00 0.00 4.02
662 663 2.104967 TGTTCGTATAGGGGTGTGGAG 58.895 52.381 0.00 0.00 0.00 3.86
663 664 1.117150 TTCGTATAGGGGTGTGGAGC 58.883 55.000 0.00 0.00 0.00 4.70
664 665 0.032912 TCGTATAGGGGTGTGGAGCA 60.033 55.000 0.00 0.00 0.00 4.26
665 666 0.104304 CGTATAGGGGTGTGGAGCAC 59.896 60.000 0.00 0.00 46.97 4.40
672 673 3.315949 GTGTGGAGCACCCGGGTA 61.316 66.667 29.72 7.58 42.10 3.69
673 674 2.285069 TGTGGAGCACCCGGGTAT 60.285 61.111 29.72 19.11 37.93 2.73
674 675 1.921346 TGTGGAGCACCCGGGTATT 60.921 57.895 29.72 18.13 37.93 1.89
675 676 0.618107 TGTGGAGCACCCGGGTATTA 60.618 55.000 29.72 8.57 37.93 0.98
676 677 0.179065 GTGGAGCACCCGGGTATTAC 60.179 60.000 29.72 18.89 37.93 1.89
677 678 0.618107 TGGAGCACCCGGGTATTACA 60.618 55.000 29.72 21.51 37.93 2.41
678 679 0.542805 GGAGCACCCGGGTATTACAA 59.457 55.000 29.72 0.00 0.00 2.41
679 680 1.065272 GGAGCACCCGGGTATTACAAA 60.065 52.381 29.72 0.00 0.00 2.83
680 681 2.422377 GGAGCACCCGGGTATTACAAAT 60.422 50.000 29.72 5.76 0.00 2.32
681 682 2.876550 GAGCACCCGGGTATTACAAATC 59.123 50.000 29.72 11.44 0.00 2.17
682 683 1.951602 GCACCCGGGTATTACAAATCC 59.048 52.381 29.72 0.62 0.00 3.01
683 684 2.215196 CACCCGGGTATTACAAATCCG 58.785 52.381 29.72 5.11 40.32 4.18
684 685 1.232119 CCCGGGTATTACAAATCCGC 58.768 55.000 14.18 0.00 39.41 5.54
685 686 1.202722 CCCGGGTATTACAAATCCGCT 60.203 52.381 14.18 0.00 39.41 5.52
686 687 2.567985 CCGGGTATTACAAATCCGCTT 58.432 47.619 0.00 0.00 39.41 4.68
687 688 2.546789 CCGGGTATTACAAATCCGCTTC 59.453 50.000 0.00 0.00 39.41 3.86
688 689 2.546789 CGGGTATTACAAATCCGCTTCC 59.453 50.000 0.00 0.00 34.17 3.46
695 696 6.560253 ATTACAAATCCGCTTCCATGATAC 57.440 37.500 0.00 0.00 0.00 2.24
705 706 4.929808 CGCTTCCATGATACTACCCATTAC 59.070 45.833 0.00 0.00 0.00 1.89
717 718 1.852965 ACCCATTACAGCCAGCCTTAT 59.147 47.619 0.00 0.00 0.00 1.73
718 719 3.053077 ACCCATTACAGCCAGCCTTATA 58.947 45.455 0.00 0.00 0.00 0.98
719 720 3.073062 ACCCATTACAGCCAGCCTTATAG 59.927 47.826 0.00 0.00 0.00 1.31
720 721 3.077359 CCATTACAGCCAGCCTTATAGC 58.923 50.000 0.00 0.00 0.00 2.97
739 740 2.289820 AGCGCATGCATCAAGAATGTAG 59.710 45.455 19.57 0.00 46.23 2.74
749 750 7.748333 GCATCAAGAATGTAGCGGTATGCAC 62.748 48.000 7.99 0.00 41.21 4.57
771 772 4.956075 ACCAAGGGATCAACCACATTAATC 59.044 41.667 0.00 0.00 41.20 1.75
904 915 2.171003 TCACATGTCAGTGATCCTCGT 58.829 47.619 0.00 0.00 43.18 4.18
910 921 3.092301 TGTCAGTGATCCTCGTCTGATT 58.908 45.455 0.00 0.00 38.80 2.57
915 926 2.863137 GTGATCCTCGTCTGATTTGAGC 59.137 50.000 0.00 0.00 0.00 4.26
923 934 3.194329 TCGTCTGATTTGAGCATCTGACT 59.806 43.478 15.22 0.00 44.25 3.41
925 936 4.502016 GTCTGATTTGAGCATCTGACTGA 58.498 43.478 11.96 0.00 43.61 3.41
931 942 4.813750 TTGAGCATCTGACTGATCTCAA 57.186 40.909 20.40 20.40 41.41 3.02
932 943 4.120792 TGAGCATCTGACTGATCTCAAC 57.879 45.455 15.47 3.69 36.91 3.18
933 944 3.768215 TGAGCATCTGACTGATCTCAACT 59.232 43.478 15.47 2.24 36.91 3.16
934 945 4.142204 TGAGCATCTGACTGATCTCAACTC 60.142 45.833 15.47 8.89 36.91 3.01
935 946 4.025360 AGCATCTGACTGATCTCAACTCT 58.975 43.478 0.00 0.00 32.05 3.24
936 947 4.098349 AGCATCTGACTGATCTCAACTCTC 59.902 45.833 0.00 0.00 32.05 3.20
937 948 4.600032 CATCTGACTGATCTCAACTCTCG 58.400 47.826 0.00 0.00 32.05 4.04
944 955 2.096657 TGATCTCAACTCTCGAGCTTCG 59.903 50.000 7.81 0.00 42.10 3.79
958 969 2.926838 GAGCTTCGAAACCTCACTGATC 59.073 50.000 16.44 1.03 0.00 2.92
966 977 3.533606 AACCTCACTGATCGATCCAAG 57.466 47.619 22.31 15.89 0.00 3.61
967 978 1.137872 ACCTCACTGATCGATCCAAGC 59.862 52.381 22.31 0.00 0.00 4.01
969 980 1.411977 CTCACTGATCGATCCAAGCCT 59.588 52.381 22.31 0.00 0.00 4.58
979 990 0.035056 ATCCAAGCCTAGCACACCAC 60.035 55.000 0.00 0.00 0.00 4.16
980 991 1.073025 CCAAGCCTAGCACACCACA 59.927 57.895 0.00 0.00 0.00 4.17
981 992 0.537143 CCAAGCCTAGCACACCACAA 60.537 55.000 0.00 0.00 0.00 3.33
982 993 1.538047 CAAGCCTAGCACACCACAAT 58.462 50.000 0.00 0.00 0.00 2.71
983 994 1.888512 CAAGCCTAGCACACCACAATT 59.111 47.619 0.00 0.00 0.00 2.32
984 995 1.826385 AGCCTAGCACACCACAATTC 58.174 50.000 0.00 0.00 0.00 2.17
985 996 0.811281 GCCTAGCACACCACAATTCC 59.189 55.000 0.00 0.00 0.00 3.01
986 997 1.886222 GCCTAGCACACCACAATTCCA 60.886 52.381 0.00 0.00 0.00 3.53
1029 1040 1.816537 CATCACCCTCGTCATCGGT 59.183 57.895 0.00 0.00 37.69 4.69
1230 1241 0.981183 TGGTGTCGGGCTTCAACTAT 59.019 50.000 0.00 0.00 0.00 2.12
1298 1309 0.113776 AAGGTGGAGGTGTACGAGGA 59.886 55.000 0.00 0.00 0.00 3.71
1486 1503 1.346365 TCTAAATGTCACTCGTGCGC 58.654 50.000 0.00 0.00 0.00 6.09
1497 1514 2.028523 CACTCGTGCGCATTCTAGAAAG 59.971 50.000 15.91 6.28 0.00 2.62
1499 1516 2.923655 CTCGTGCGCATTCTAGAAAGAA 59.076 45.455 15.91 0.00 45.63 2.52
1500 1517 3.322369 TCGTGCGCATTCTAGAAAGAAA 58.678 40.909 15.91 0.00 44.75 2.52
1501 1518 3.743911 TCGTGCGCATTCTAGAAAGAAAA 59.256 39.130 15.91 0.00 44.75 2.29
1502 1519 4.212425 TCGTGCGCATTCTAGAAAGAAAAA 59.788 37.500 15.91 0.00 44.75 1.94
1540 1557 6.478512 AATTTGAGCTAACTGGTGGAAAAA 57.521 33.333 0.00 0.00 0.00 1.94
1562 1579 3.116551 AGTGGATGCCTTATACTCCCTCT 60.117 47.826 0.00 0.00 0.00 3.69
1565 1582 4.140782 TGGATGCCTTATACTCCCTCTGTA 60.141 45.833 0.00 0.00 0.00 2.74
1566 1583 4.838986 GGATGCCTTATACTCCCTCTGTAA 59.161 45.833 0.00 0.00 0.00 2.41
1567 1584 5.307196 GGATGCCTTATACTCCCTCTGTAAA 59.693 44.000 0.00 0.00 0.00 2.01
1568 1585 5.609533 TGCCTTATACTCCCTCTGTAAAC 57.390 43.478 0.00 0.00 0.00 2.01
1569 1586 5.278061 TGCCTTATACTCCCTCTGTAAACT 58.722 41.667 0.00 0.00 0.00 2.66
1581 1598 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1582 1599 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1584 1601 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1599 1616 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
1600 1617 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
1601 1618 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
1602 1619 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
1603 1620 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
1604 1621 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
1653 1836 5.243207 AGGGAGTACTACATTTTCAAACGG 58.757 41.667 7.57 0.00 0.00 4.44
1669 1852 2.362889 GGAGGGGGTGCACCAATG 60.363 66.667 35.78 0.00 42.91 2.82
1725 1991 3.347077 AGCCTGAGAGAACAGAATTGG 57.653 47.619 0.00 0.00 39.94 3.16
1816 2082 5.686834 CATCAGATATGAGATGGTTTTGCG 58.313 41.667 0.00 0.00 38.33 4.85
1842 2108 2.644798 AGGCATCTGGGTTCTACAGTTT 59.355 45.455 0.00 0.00 37.25 2.66
1843 2109 3.074538 AGGCATCTGGGTTCTACAGTTTT 59.925 43.478 0.00 0.00 37.25 2.43
1944 2210 3.100111 CCCTTCCCCTCCTTTGGG 58.900 66.667 0.00 0.00 46.68 4.12
2183 2449 1.813513 ACACACTAGACAATGGCTGC 58.186 50.000 0.00 0.00 0.00 5.25
2188 2454 3.004734 ACACTAGACAATGGCTGCAAAAC 59.995 43.478 0.00 0.00 0.00 2.43
2211 2478 8.947055 AACACTTTGCAAAATTGAGTTTAGAT 57.053 26.923 21.56 0.60 0.00 1.98
2220 2487 9.860898 GCAAAATTGAGTTTAGATCTAAATGGT 57.139 29.630 26.46 16.26 37.37 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.692115 TCACTTAATTCTATGCCACCTCA 57.308 39.130 0.00 0.00 0.00 3.86
2 3 6.823689 TCTTTCACTTAATTCTATGCCACCTC 59.176 38.462 0.00 0.00 0.00 3.85
3 4 6.721318 TCTTTCACTTAATTCTATGCCACCT 58.279 36.000 0.00 0.00 0.00 4.00
4 5 7.391148 TTCTTTCACTTAATTCTATGCCACC 57.609 36.000 0.00 0.00 0.00 4.61
5 6 9.860898 ATTTTCTTTCACTTAATTCTATGCCAC 57.139 29.630 0.00 0.00 0.00 5.01
66 67 8.861086 CCCAGACAAGACACATACTAGTATAAT 58.139 37.037 15.03 4.22 0.00 1.28
67 68 8.057011 TCCCAGACAAGACACATACTAGTATAA 58.943 37.037 15.03 0.00 0.00 0.98
68 69 7.580007 TCCCAGACAAGACACATACTAGTATA 58.420 38.462 15.03 0.00 0.00 1.47
69 70 6.432581 TCCCAGACAAGACACATACTAGTAT 58.567 40.000 9.71 9.71 0.00 2.12
70 71 5.823312 TCCCAGACAAGACACATACTAGTA 58.177 41.667 4.77 4.77 0.00 1.82
71 72 4.673968 TCCCAGACAAGACACATACTAGT 58.326 43.478 0.00 0.00 0.00 2.57
72 73 5.661056 TTCCCAGACAAGACACATACTAG 57.339 43.478 0.00 0.00 0.00 2.57
73 74 7.727578 TTATTCCCAGACAAGACACATACTA 57.272 36.000 0.00 0.00 0.00 1.82
74 75 6.620877 TTATTCCCAGACAAGACACATACT 57.379 37.500 0.00 0.00 0.00 2.12
75 76 7.865706 ATTTATTCCCAGACAAGACACATAC 57.134 36.000 0.00 0.00 0.00 2.39
76 77 9.613428 CTTATTTATTCCCAGACAAGACACATA 57.387 33.333 0.00 0.00 0.00 2.29
77 78 8.328758 TCTTATTTATTCCCAGACAAGACACAT 58.671 33.333 0.00 0.00 0.00 3.21
78 79 7.685481 TCTTATTTATTCCCAGACAAGACACA 58.315 34.615 0.00 0.00 0.00 3.72
79 80 8.738645 ATCTTATTTATTCCCAGACAAGACAC 57.261 34.615 0.00 0.00 0.00 3.67
80 81 8.548025 TGATCTTATTTATTCCCAGACAAGACA 58.452 33.333 0.00 0.00 0.00 3.41
81 82 8.964476 TGATCTTATTTATTCCCAGACAAGAC 57.036 34.615 0.00 0.00 0.00 3.01
82 83 9.784531 GATGATCTTATTTATTCCCAGACAAGA 57.215 33.333 0.00 0.00 0.00 3.02
83 84 9.790344 AGATGATCTTATTTATTCCCAGACAAG 57.210 33.333 0.00 0.00 0.00 3.16
84 85 9.565090 CAGATGATCTTATTTATTCCCAGACAA 57.435 33.333 0.00 0.00 0.00 3.18
85 86 8.937835 TCAGATGATCTTATTTATTCCCAGACA 58.062 33.333 0.00 0.00 0.00 3.41
86 87 9.434420 CTCAGATGATCTTATTTATTCCCAGAC 57.566 37.037 0.00 0.00 0.00 3.51
87 88 9.384849 TCTCAGATGATCTTATTTATTCCCAGA 57.615 33.333 0.00 0.00 0.00 3.86
101 102 9.905713 GGAGTAGATTAGTATCTCAGATGATCT 57.094 37.037 0.00 4.06 41.38 2.75
102 103 9.120538 GGGAGTAGATTAGTATCTCAGATGATC 57.879 40.741 0.00 0.00 41.38 2.92
103 104 8.845793 AGGGAGTAGATTAGTATCTCAGATGAT 58.154 37.037 0.00 0.00 41.38 2.45
104 105 8.225863 AGGGAGTAGATTAGTATCTCAGATGA 57.774 38.462 0.00 0.00 41.38 2.92
105 106 7.556275 GGAGGGAGTAGATTAGTATCTCAGATG 59.444 44.444 0.00 0.00 41.38 2.90
106 107 7.582633 CGGAGGGAGTAGATTAGTATCTCAGAT 60.583 44.444 0.00 0.00 41.38 2.90
107 108 6.295973 CGGAGGGAGTAGATTAGTATCTCAGA 60.296 46.154 0.00 0.00 41.38 3.27
108 109 5.878116 CGGAGGGAGTAGATTAGTATCTCAG 59.122 48.000 0.00 0.00 41.38 3.35
109 110 5.310068 ACGGAGGGAGTAGATTAGTATCTCA 59.690 44.000 0.00 0.00 41.38 3.27
110 111 5.807909 ACGGAGGGAGTAGATTAGTATCTC 58.192 45.833 0.00 0.00 41.38 2.75
111 112 5.846528 ACGGAGGGAGTAGATTAGTATCT 57.153 43.478 0.00 0.00 43.51 1.98
112 113 5.415389 GGAACGGAGGGAGTAGATTAGTATC 59.585 48.000 0.00 0.00 0.00 2.24
113 114 5.163012 TGGAACGGAGGGAGTAGATTAGTAT 60.163 44.000 0.00 0.00 0.00 2.12
114 115 4.166725 TGGAACGGAGGGAGTAGATTAGTA 59.833 45.833 0.00 0.00 0.00 1.82
115 116 3.053095 TGGAACGGAGGGAGTAGATTAGT 60.053 47.826 0.00 0.00 0.00 2.24
116 117 3.563223 TGGAACGGAGGGAGTAGATTAG 58.437 50.000 0.00 0.00 0.00 1.73
117 118 3.675348 TGGAACGGAGGGAGTAGATTA 57.325 47.619 0.00 0.00 0.00 1.75
118 119 2.544844 TGGAACGGAGGGAGTAGATT 57.455 50.000 0.00 0.00 0.00 2.40
119 120 2.544844 TTGGAACGGAGGGAGTAGAT 57.455 50.000 0.00 0.00 0.00 1.98
120 121 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
121 122 3.629142 AATTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
122 123 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
123 124 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
124 125 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
125 126 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
126 127 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
127 128 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
128 129 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
129 130 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
130 131 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
131 132 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
132 133 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
133 134 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
134 135 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
135 136 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
136 137 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
137 138 6.849588 AACTAAAACCACGACGAGTAATTT 57.150 33.333 0.00 0.34 0.00 1.82
138 139 6.849588 AAACTAAAACCACGACGAGTAATT 57.150 33.333 0.00 1.08 0.00 1.40
139 140 7.945033 TTAAACTAAAACCACGACGAGTAAT 57.055 32.000 0.00 0.00 0.00 1.89
140 141 7.945033 ATTAAACTAAAACCACGACGAGTAA 57.055 32.000 0.00 0.00 0.00 2.24
141 142 7.945033 AATTAAACTAAAACCACGACGAGTA 57.055 32.000 0.00 0.00 0.00 2.59
142 143 6.849588 AATTAAACTAAAACCACGACGAGT 57.150 33.333 0.00 0.00 0.00 4.18
143 144 7.851963 TCAAAATTAAACTAAAACCACGACGAG 59.148 33.333 0.00 0.00 0.00 4.18
144 145 7.692088 TCAAAATTAAACTAAAACCACGACGA 58.308 30.769 0.00 0.00 0.00 4.20
145 146 7.895582 TCAAAATTAAACTAAAACCACGACG 57.104 32.000 0.00 0.00 0.00 5.12
146 147 9.292846 AGTTCAAAATTAAACTAAAACCACGAC 57.707 29.630 0.00 0.00 34.05 4.34
147 148 9.291664 CAGTTCAAAATTAAACTAAAACCACGA 57.708 29.630 0.00 0.00 34.05 4.35
148 149 9.291664 TCAGTTCAAAATTAAACTAAAACCACG 57.708 29.630 1.73 0.00 34.05 4.94
155 156 9.291664 CGTGGTTTCAGTTCAAAATTAAACTAA 57.708 29.630 0.00 0.00 34.05 2.24
156 157 8.675504 TCGTGGTTTCAGTTCAAAATTAAACTA 58.324 29.630 0.00 0.00 34.05 2.24
157 158 7.486870 GTCGTGGTTTCAGTTCAAAATTAAACT 59.513 33.333 0.00 0.00 36.16 2.66
158 159 7.512426 CGTCGTGGTTTCAGTTCAAAATTAAAC 60.512 37.037 0.00 0.00 0.00 2.01
159 160 6.469595 CGTCGTGGTTTCAGTTCAAAATTAAA 59.530 34.615 0.00 0.00 0.00 1.52
160 161 5.966503 CGTCGTGGTTTCAGTTCAAAATTAA 59.033 36.000 0.00 0.00 0.00 1.40
161 162 5.293814 TCGTCGTGGTTTCAGTTCAAAATTA 59.706 36.000 0.00 0.00 0.00 1.40
162 163 4.095185 TCGTCGTGGTTTCAGTTCAAAATT 59.905 37.500 0.00 0.00 0.00 1.82
163 164 3.623960 TCGTCGTGGTTTCAGTTCAAAAT 59.376 39.130 0.00 0.00 0.00 1.82
164 165 3.001414 TCGTCGTGGTTTCAGTTCAAAA 58.999 40.909 0.00 0.00 0.00 2.44
165 166 2.605818 CTCGTCGTGGTTTCAGTTCAAA 59.394 45.455 0.00 0.00 0.00 2.69
166 167 2.198406 CTCGTCGTGGTTTCAGTTCAA 58.802 47.619 0.00 0.00 0.00 2.69
167 168 1.135527 ACTCGTCGTGGTTTCAGTTCA 59.864 47.619 0.00 0.00 0.00 3.18
168 169 1.849097 ACTCGTCGTGGTTTCAGTTC 58.151 50.000 0.00 0.00 0.00 3.01
169 170 3.441496 TTACTCGTCGTGGTTTCAGTT 57.559 42.857 0.00 0.00 0.00 3.16
170 171 3.655276 ATTACTCGTCGTGGTTTCAGT 57.345 42.857 0.00 0.00 0.00 3.41
171 172 4.985044 AAATTACTCGTCGTGGTTTCAG 57.015 40.909 0.00 0.00 0.00 3.02
172 173 5.771469 TCTAAATTACTCGTCGTGGTTTCA 58.229 37.500 0.00 0.00 0.00 2.69
173 174 6.695292 TTCTAAATTACTCGTCGTGGTTTC 57.305 37.500 0.00 0.00 0.00 2.78
174 175 6.869913 TCATTCTAAATTACTCGTCGTGGTTT 59.130 34.615 0.00 0.79 0.00 3.27
175 176 6.392354 TCATTCTAAATTACTCGTCGTGGTT 58.608 36.000 0.00 0.00 0.00 3.67
176 177 5.957798 TCATTCTAAATTACTCGTCGTGGT 58.042 37.500 0.00 0.00 0.00 4.16
177 178 6.019801 CCTTCATTCTAAATTACTCGTCGTGG 60.020 42.308 0.00 0.00 0.00 4.94
178 179 6.019801 CCCTTCATTCTAAATTACTCGTCGTG 60.020 42.308 0.00 0.00 0.00 4.35
179 180 6.040878 CCCTTCATTCTAAATTACTCGTCGT 58.959 40.000 0.00 0.00 0.00 4.34
180 181 6.270815 TCCCTTCATTCTAAATTACTCGTCG 58.729 40.000 0.00 0.00 0.00 5.12
181 182 7.266400 ACTCCCTTCATTCTAAATTACTCGTC 58.734 38.462 0.00 0.00 0.00 4.20
182 183 7.184067 ACTCCCTTCATTCTAAATTACTCGT 57.816 36.000 0.00 0.00 0.00 4.18
193 194 9.326489 TGCATAGTATTATACTCCCTTCATTCT 57.674 33.333 8.29 0.00 40.14 2.40
196 197 9.271921 TGATGCATAGTATTATACTCCCTTCAT 57.728 33.333 8.29 6.68 40.14 2.57
197 198 8.664669 TGATGCATAGTATTATACTCCCTTCA 57.335 34.615 8.29 8.94 40.14 3.02
198 199 9.944376 TTTGATGCATAGTATTATACTCCCTTC 57.056 33.333 8.29 6.88 40.14 3.46
209 210 9.338622 GGTACTACCTTTTTGATGCATAGTATT 57.661 33.333 0.00 0.00 34.73 1.89
210 211 8.491134 TGGTACTACCTTTTTGATGCATAGTAT 58.509 33.333 0.00 0.00 39.58 2.12
211 212 7.853299 TGGTACTACCTTTTTGATGCATAGTA 58.147 34.615 0.00 0.00 39.58 1.82
212 213 6.717289 TGGTACTACCTTTTTGATGCATAGT 58.283 36.000 0.00 0.00 39.58 2.12
213 214 7.807977 ATGGTACTACCTTTTTGATGCATAG 57.192 36.000 0.00 0.00 39.58 2.23
215 216 9.284968 GTATATGGTACTACCTTTTTGATGCAT 57.715 33.333 0.00 0.00 39.58 3.96
216 217 8.491134 AGTATATGGTACTACCTTTTTGATGCA 58.509 33.333 6.79 0.00 39.58 3.96
217 218 8.904099 AGTATATGGTACTACCTTTTTGATGC 57.096 34.615 6.79 0.00 39.58 3.91
247 248 8.913487 ATCACAAGTTAGAATCATGCATATGA 57.087 30.769 6.97 0.00 46.67 2.15
251 252 9.265901 GTAGTATCACAAGTTAGAATCATGCAT 57.734 33.333 0.00 0.00 0.00 3.96
252 253 7.435192 CGTAGTATCACAAGTTAGAATCATGCA 59.565 37.037 0.00 0.00 0.00 3.96
253 254 7.096023 CCGTAGTATCACAAGTTAGAATCATGC 60.096 40.741 0.00 0.00 0.00 4.06
254 255 8.135529 TCCGTAGTATCACAAGTTAGAATCATG 58.864 37.037 0.00 0.00 0.00 3.07
255 256 8.234136 TCCGTAGTATCACAAGTTAGAATCAT 57.766 34.615 0.00 0.00 0.00 2.45
256 257 7.634671 TCCGTAGTATCACAAGTTAGAATCA 57.365 36.000 0.00 0.00 0.00 2.57
257 258 8.922058 TTTCCGTAGTATCACAAGTTAGAATC 57.078 34.615 0.00 0.00 0.00 2.52
258 259 9.886132 ATTTTCCGTAGTATCACAAGTTAGAAT 57.114 29.630 0.00 0.00 0.00 2.40
260 261 9.793252 GTATTTTCCGTAGTATCACAAGTTAGA 57.207 33.333 0.00 0.00 0.00 2.10
261 262 9.577110 TGTATTTTCCGTAGTATCACAAGTTAG 57.423 33.333 0.00 0.00 0.00 2.34
262 263 9.357652 GTGTATTTTCCGTAGTATCACAAGTTA 57.642 33.333 0.00 0.00 0.00 2.24
263 264 7.874016 TGTGTATTTTCCGTAGTATCACAAGTT 59.126 33.333 0.00 0.00 31.85 2.66
264 265 7.380536 TGTGTATTTTCCGTAGTATCACAAGT 58.619 34.615 0.00 0.00 31.85 3.16
265 266 7.010183 CCTGTGTATTTTCCGTAGTATCACAAG 59.990 40.741 0.00 0.00 33.91 3.16
266 267 6.814644 CCTGTGTATTTTCCGTAGTATCACAA 59.185 38.462 0.00 0.00 33.91 3.33
267 268 6.153170 TCCTGTGTATTTTCCGTAGTATCACA 59.847 38.462 0.00 0.00 33.38 3.58
268 269 6.567050 TCCTGTGTATTTTCCGTAGTATCAC 58.433 40.000 0.00 0.00 0.00 3.06
269 270 6.682113 GCTCCTGTGTATTTTCCGTAGTATCA 60.682 42.308 0.00 0.00 0.00 2.15
270 271 5.690857 GCTCCTGTGTATTTTCCGTAGTATC 59.309 44.000 0.00 0.00 0.00 2.24
271 272 5.363005 AGCTCCTGTGTATTTTCCGTAGTAT 59.637 40.000 0.00 0.00 0.00 2.12
272 273 4.708421 AGCTCCTGTGTATTTTCCGTAGTA 59.292 41.667 0.00 0.00 0.00 1.82
273 274 3.514309 AGCTCCTGTGTATTTTCCGTAGT 59.486 43.478 0.00 0.00 0.00 2.73
274 275 4.113354 GAGCTCCTGTGTATTTTCCGTAG 58.887 47.826 0.87 0.00 0.00 3.51
275 276 3.512329 TGAGCTCCTGTGTATTTTCCGTA 59.488 43.478 12.15 0.00 0.00 4.02
276 277 2.301870 TGAGCTCCTGTGTATTTTCCGT 59.698 45.455 12.15 0.00 0.00 4.69
277 278 2.972625 TGAGCTCCTGTGTATTTTCCG 58.027 47.619 12.15 0.00 0.00 4.30
278 279 3.629398 CCATGAGCTCCTGTGTATTTTCC 59.371 47.826 16.53 0.00 0.00 3.13
279 280 3.629398 CCCATGAGCTCCTGTGTATTTTC 59.371 47.826 16.53 0.00 0.00 2.29
280 281 3.010584 ACCCATGAGCTCCTGTGTATTTT 59.989 43.478 16.53 0.00 0.00 1.82
281 282 2.578021 ACCCATGAGCTCCTGTGTATTT 59.422 45.455 16.53 0.00 0.00 1.40
282 283 2.092753 CACCCATGAGCTCCTGTGTATT 60.093 50.000 16.53 0.00 0.00 1.89
283 284 1.487976 CACCCATGAGCTCCTGTGTAT 59.512 52.381 16.53 0.00 0.00 2.29
284 285 0.904649 CACCCATGAGCTCCTGTGTA 59.095 55.000 16.53 0.00 0.00 2.90
285 286 1.681666 CACCCATGAGCTCCTGTGT 59.318 57.895 16.53 9.49 0.00 3.72
286 287 1.748122 GCACCCATGAGCTCCTGTG 60.748 63.158 16.53 15.26 0.00 3.66
287 288 1.922369 AGCACCCATGAGCTCCTGT 60.922 57.895 16.53 3.82 36.00 4.00
288 289 2.996395 AGCACCCATGAGCTCCTG 59.004 61.111 12.15 11.90 36.00 3.86
301 302 1.024579 CGTATTGGGGTGTGGAGCAC 61.025 60.000 0.00 0.00 46.97 4.40
302 303 1.195442 TCGTATTGGGGTGTGGAGCA 61.195 55.000 0.00 0.00 0.00 4.26
303 304 0.035820 TTCGTATTGGGGTGTGGAGC 60.036 55.000 0.00 0.00 0.00 4.70
304 305 2.710096 ATTCGTATTGGGGTGTGGAG 57.290 50.000 0.00 0.00 0.00 3.86
305 306 4.781775 AATATTCGTATTGGGGTGTGGA 57.218 40.909 0.00 0.00 0.00 4.02
306 307 6.712998 TGATTAATATTCGTATTGGGGTGTGG 59.287 38.462 0.00 0.00 0.00 4.17
307 308 7.737972 TGATTAATATTCGTATTGGGGTGTG 57.262 36.000 0.00 0.00 0.00 3.82
340 341 9.500785 TTTCAGAACTTTTTGAATTCTTTTGGT 57.499 25.926 7.05 0.00 33.68 3.67
346 347 9.112725 CCCAAATTTCAGAACTTTTTGAATTCT 57.887 29.630 7.05 0.00 33.68 2.40
347 348 8.344831 CCCCAAATTTCAGAACTTTTTGAATTC 58.655 33.333 0.00 0.00 33.68 2.17
348 349 8.052141 TCCCCAAATTTCAGAACTTTTTGAATT 58.948 29.630 11.46 0.00 33.68 2.17
349 350 7.572814 TCCCCAAATTTCAGAACTTTTTGAAT 58.427 30.769 11.46 0.00 33.68 2.57
350 351 6.951971 TCCCCAAATTTCAGAACTTTTTGAA 58.048 32.000 11.46 0.00 30.69 2.69
351 352 6.552445 TCCCCAAATTTCAGAACTTTTTGA 57.448 33.333 11.46 1.62 30.69 2.69
352 353 8.938906 CATATCCCCAAATTTCAGAACTTTTTG 58.061 33.333 0.00 1.76 0.00 2.44
353 354 8.879227 TCATATCCCCAAATTTCAGAACTTTTT 58.121 29.630 0.00 0.00 0.00 1.94
354 355 8.434589 TCATATCCCCAAATTTCAGAACTTTT 57.565 30.769 0.00 0.00 0.00 2.27
355 356 8.434589 TTCATATCCCCAAATTTCAGAACTTT 57.565 30.769 0.00 0.00 0.00 2.66
356 357 8.314021 GTTTCATATCCCCAAATTTCAGAACTT 58.686 33.333 0.00 0.00 0.00 2.66
357 358 7.454380 TGTTTCATATCCCCAAATTTCAGAACT 59.546 33.333 0.00 0.00 0.00 3.01
358 359 7.610865 TGTTTCATATCCCCAAATTTCAGAAC 58.389 34.615 0.00 0.00 0.00 3.01
359 360 7.789202 TGTTTCATATCCCCAAATTTCAGAA 57.211 32.000 0.00 0.00 0.00 3.02
360 361 7.147689 CCATGTTTCATATCCCCAAATTTCAGA 60.148 37.037 0.00 0.00 0.00 3.27
361 362 6.987992 CCATGTTTCATATCCCCAAATTTCAG 59.012 38.462 0.00 0.00 0.00 3.02
362 363 6.671340 TCCATGTTTCATATCCCCAAATTTCA 59.329 34.615 0.00 0.00 0.00 2.69
363 364 7.123355 TCCATGTTTCATATCCCCAAATTTC 57.877 36.000 0.00 0.00 0.00 2.17
364 365 7.695074 ATCCATGTTTCATATCCCCAAATTT 57.305 32.000 0.00 0.00 0.00 1.82
365 366 7.569858 AGAATCCATGTTTCATATCCCCAAATT 59.430 33.333 7.99 0.00 0.00 1.82
366 367 7.077745 AGAATCCATGTTTCATATCCCCAAAT 58.922 34.615 7.99 0.00 0.00 2.32
367 368 6.442961 AGAATCCATGTTTCATATCCCCAAA 58.557 36.000 7.99 0.00 0.00 3.28
368 369 6.029492 AGAATCCATGTTTCATATCCCCAA 57.971 37.500 7.99 0.00 0.00 4.12
369 370 5.134169 TGAGAATCCATGTTTCATATCCCCA 59.866 40.000 7.99 0.00 0.00 4.96
370 371 5.634118 TGAGAATCCATGTTTCATATCCCC 58.366 41.667 7.99 0.00 0.00 4.81
371 372 7.668886 AGATTGAGAATCCATGTTTCATATCCC 59.331 37.037 7.99 0.00 38.71 3.85
372 373 8.632906 AGATTGAGAATCCATGTTTCATATCC 57.367 34.615 7.99 0.00 38.71 2.59
375 376 9.770097 GAGTAGATTGAGAATCCATGTTTCATA 57.230 33.333 7.99 0.00 38.71 2.15
376 377 7.718753 GGAGTAGATTGAGAATCCATGTTTCAT 59.281 37.037 7.99 0.00 38.71 2.57
377 378 7.050377 GGAGTAGATTGAGAATCCATGTTTCA 58.950 38.462 7.99 0.00 38.71 2.69
378 379 7.226325 CAGGAGTAGATTGAGAATCCATGTTTC 59.774 40.741 0.00 0.00 38.71 2.78
379 380 7.052873 CAGGAGTAGATTGAGAATCCATGTTT 58.947 38.462 0.00 0.00 38.71 2.83
380 381 6.157645 ACAGGAGTAGATTGAGAATCCATGTT 59.842 38.462 0.00 0.00 38.71 2.71
381 382 5.664908 ACAGGAGTAGATTGAGAATCCATGT 59.335 40.000 0.00 0.00 38.71 3.21
382 383 5.990386 CACAGGAGTAGATTGAGAATCCATG 59.010 44.000 0.00 0.00 38.71 3.66
383 384 5.664908 ACACAGGAGTAGATTGAGAATCCAT 59.335 40.000 0.00 0.00 38.71 3.41
384 385 5.026121 ACACAGGAGTAGATTGAGAATCCA 58.974 41.667 0.00 0.00 38.71 3.41
385 386 5.127845 TCACACAGGAGTAGATTGAGAATCC 59.872 44.000 0.00 0.00 38.71 3.01
386 387 6.214191 TCACACAGGAGTAGATTGAGAATC 57.786 41.667 0.00 0.00 38.20 2.52
387 388 6.611613 TTCACACAGGAGTAGATTGAGAAT 57.388 37.500 0.00 0.00 0.00 2.40
388 389 6.419484 TTTCACACAGGAGTAGATTGAGAA 57.581 37.500 0.00 0.00 0.00 2.87
389 390 6.611613 ATTTCACACAGGAGTAGATTGAGA 57.388 37.500 0.00 0.00 0.00 3.27
390 391 7.412346 CGAAATTTCACACAGGAGTAGATTGAG 60.412 40.741 17.99 0.00 0.00 3.02
391 392 6.368791 CGAAATTTCACACAGGAGTAGATTGA 59.631 38.462 17.99 0.00 0.00 2.57
392 393 6.147821 ACGAAATTTCACACAGGAGTAGATTG 59.852 38.462 17.99 0.00 0.00 2.67
393 394 6.147821 CACGAAATTTCACACAGGAGTAGATT 59.852 38.462 17.99 0.00 0.00 2.40
394 395 5.639506 CACGAAATTTCACACAGGAGTAGAT 59.360 40.000 17.99 0.00 0.00 1.98
395 396 4.988540 CACGAAATTTCACACAGGAGTAGA 59.011 41.667 17.99 0.00 0.00 2.59
396 397 4.152402 CCACGAAATTTCACACAGGAGTAG 59.848 45.833 17.99 0.06 0.00 2.57
397 398 4.062293 CCACGAAATTTCACACAGGAGTA 58.938 43.478 17.99 0.00 0.00 2.59
398 399 2.878406 CCACGAAATTTCACACAGGAGT 59.122 45.455 17.99 2.51 0.00 3.85
399 400 3.138304 TCCACGAAATTTCACACAGGAG 58.862 45.455 17.99 1.90 0.00 3.69
400 401 3.201353 TCCACGAAATTTCACACAGGA 57.799 42.857 17.99 12.80 0.00 3.86
401 402 3.980646 TTCCACGAAATTTCACACAGG 57.019 42.857 17.99 10.93 0.00 4.00
402 403 6.826893 ATTTTTCCACGAAATTTCACACAG 57.173 33.333 17.99 3.97 31.34 3.66
403 404 6.697892 GGTATTTTTCCACGAAATTTCACACA 59.302 34.615 17.99 0.00 31.34 3.72
404 405 6.697892 TGGTATTTTTCCACGAAATTTCACAC 59.302 34.615 17.99 0.00 31.34 3.82
405 406 6.806751 TGGTATTTTTCCACGAAATTTCACA 58.193 32.000 17.99 0.00 31.34 3.58
406 407 6.364976 CCTGGTATTTTTCCACGAAATTTCAC 59.635 38.462 17.99 4.51 31.34 3.18
407 408 6.265649 TCCTGGTATTTTTCCACGAAATTTCA 59.734 34.615 17.99 0.00 31.34 2.69
408 409 6.683715 TCCTGGTATTTTTCCACGAAATTTC 58.316 36.000 8.20 8.20 31.34 2.17
409 410 6.658188 TCCTGGTATTTTTCCACGAAATTT 57.342 33.333 0.00 0.00 31.34 1.82
410 411 6.658188 TTCCTGGTATTTTTCCACGAAATT 57.342 33.333 0.00 0.00 31.34 1.82
411 412 6.452242 GTTTCCTGGTATTTTTCCACGAAAT 58.548 36.000 10.44 0.00 39.81 2.17
412 413 5.505985 CGTTTCCTGGTATTTTTCCACGAAA 60.506 40.000 0.00 0.00 37.51 3.46
413 414 4.023878 CGTTTCCTGGTATTTTTCCACGAA 60.024 41.667 0.00 0.00 31.70 3.85
414 415 3.499157 CGTTTCCTGGTATTTTTCCACGA 59.501 43.478 0.00 0.00 0.00 4.35
415 416 3.251487 ACGTTTCCTGGTATTTTTCCACG 59.749 43.478 0.00 0.00 0.00 4.94
416 417 4.841443 ACGTTTCCTGGTATTTTTCCAC 57.159 40.909 0.00 0.00 0.00 4.02
417 418 6.373216 CAGATACGTTTCCTGGTATTTTTCCA 59.627 38.462 0.00 0.00 29.86 3.53
418 419 6.373495 ACAGATACGTTTCCTGGTATTTTTCC 59.627 38.462 13.52 0.00 32.52 3.13
419 420 7.241376 CACAGATACGTTTCCTGGTATTTTTC 58.759 38.462 13.52 0.00 32.52 2.29
420 421 6.150474 CCACAGATACGTTTCCTGGTATTTTT 59.850 38.462 13.52 0.00 32.52 1.94
421 422 5.646360 CCACAGATACGTTTCCTGGTATTTT 59.354 40.000 13.52 0.00 32.52 1.82
422 423 5.183228 CCACAGATACGTTTCCTGGTATTT 58.817 41.667 13.52 0.00 32.52 1.40
423 424 4.766375 CCACAGATACGTTTCCTGGTATT 58.234 43.478 13.52 0.00 32.52 1.89
424 425 3.431766 GCCACAGATACGTTTCCTGGTAT 60.432 47.826 16.64 0.00 32.52 2.73
425 426 2.093869 GCCACAGATACGTTTCCTGGTA 60.094 50.000 16.64 0.00 32.52 3.25
426 427 1.338769 GCCACAGATACGTTTCCTGGT 60.339 52.381 16.64 6.14 32.52 4.00
427 428 1.369625 GCCACAGATACGTTTCCTGG 58.630 55.000 13.09 13.09 32.52 4.45
428 429 0.999406 CGCCACAGATACGTTTCCTG 59.001 55.000 0.00 1.27 0.00 3.86
429 430 0.892755 TCGCCACAGATACGTTTCCT 59.107 50.000 0.00 0.00 0.00 3.36
430 431 1.717194 TTCGCCACAGATACGTTTCC 58.283 50.000 0.00 0.00 0.00 3.13
431 432 2.991190 TCTTTCGCCACAGATACGTTTC 59.009 45.455 0.00 0.00 0.00 2.78
432 433 3.034721 TCTTTCGCCACAGATACGTTT 57.965 42.857 0.00 0.00 0.00 3.60
433 434 2.736144 TCTTTCGCCACAGATACGTT 57.264 45.000 0.00 0.00 0.00 3.99
434 435 2.736144 TTCTTTCGCCACAGATACGT 57.264 45.000 0.00 0.00 0.00 3.57
435 436 5.907197 ATATTTCTTTCGCCACAGATACG 57.093 39.130 0.00 0.00 0.00 3.06
436 437 7.016361 ACAATATTTCTTTCGCCACAGATAC 57.984 36.000 0.00 0.00 0.00 2.24
437 438 7.465379 CGAACAATATTTCTTTCGCCACAGATA 60.465 37.037 9.49 0.00 34.96 1.98
438 439 6.515272 AACAATATTTCTTTCGCCACAGAT 57.485 33.333 0.00 0.00 0.00 2.90
439 440 5.390461 CGAACAATATTTCTTTCGCCACAGA 60.390 40.000 9.49 0.00 34.96 3.41
440 441 4.788100 CGAACAATATTTCTTTCGCCACAG 59.212 41.667 9.49 0.00 34.96 3.66
441 442 4.452795 TCGAACAATATTTCTTTCGCCACA 59.547 37.500 14.56 1.17 40.47 4.17
442 443 4.965062 TCGAACAATATTTCTTTCGCCAC 58.035 39.130 14.56 0.00 40.47 5.01
443 444 5.049336 TGTTCGAACAATATTTCTTTCGCCA 60.049 36.000 27.94 11.74 40.47 5.69
444 445 5.387279 TGTTCGAACAATATTTCTTTCGCC 58.613 37.500 27.94 10.11 40.47 5.54
445 446 6.904954 TTGTTCGAACAATATTTCTTTCGC 57.095 33.333 33.86 2.17 43.45 4.70
457 458 7.331934 TGTTTGGATTGATTTTTGTTCGAACAA 59.668 29.630 33.86 33.86 46.35 2.83
458 459 6.813649 TGTTTGGATTGATTTTTGTTCGAACA 59.186 30.769 26.53 26.53 37.08 3.18
459 460 7.010091 ACTGTTTGGATTGATTTTTGTTCGAAC 59.990 33.333 21.42 21.42 0.00 3.95
460 461 7.038659 ACTGTTTGGATTGATTTTTGTTCGAA 58.961 30.769 0.00 0.00 0.00 3.71
461 462 6.568869 ACTGTTTGGATTGATTTTTGTTCGA 58.431 32.000 0.00 0.00 0.00 3.71
462 463 6.826893 ACTGTTTGGATTGATTTTTGTTCG 57.173 33.333 0.00 0.00 0.00 3.95
463 464 9.838975 AAAAACTGTTTGGATTGATTTTTGTTC 57.161 25.926 6.53 0.00 0.00 3.18
492 493 9.255304 GCAAAAAGACAAAAATTCCTATGTGTA 57.745 29.630 0.00 0.00 0.00 2.90
493 494 7.226523 GGCAAAAAGACAAAAATTCCTATGTGT 59.773 33.333 0.00 0.00 0.00 3.72
494 495 7.307930 GGGCAAAAAGACAAAAATTCCTATGTG 60.308 37.037 0.00 0.00 0.00 3.21
495 496 6.710295 GGGCAAAAAGACAAAAATTCCTATGT 59.290 34.615 0.00 0.00 0.00 2.29
496 497 6.128580 CGGGCAAAAAGACAAAAATTCCTATG 60.129 38.462 0.00 0.00 0.00 2.23
497 498 5.931724 CGGGCAAAAAGACAAAAATTCCTAT 59.068 36.000 0.00 0.00 0.00 2.57
498 499 5.069251 TCGGGCAAAAAGACAAAAATTCCTA 59.931 36.000 0.00 0.00 0.00 2.94
499 500 4.126437 CGGGCAAAAAGACAAAAATTCCT 58.874 39.130 0.00 0.00 0.00 3.36
500 501 4.123506 TCGGGCAAAAAGACAAAAATTCC 58.876 39.130 0.00 0.00 0.00 3.01
501 502 5.726729 TTCGGGCAAAAAGACAAAAATTC 57.273 34.783 0.00 0.00 0.00 2.17
502 503 6.203915 GGTATTCGGGCAAAAAGACAAAAATT 59.796 34.615 0.00 0.00 0.00 1.82
503 504 5.699001 GGTATTCGGGCAAAAAGACAAAAAT 59.301 36.000 0.00 0.00 0.00 1.82
504 505 5.051153 GGTATTCGGGCAAAAAGACAAAAA 58.949 37.500 0.00 0.00 0.00 1.94
505 506 4.342665 AGGTATTCGGGCAAAAAGACAAAA 59.657 37.500 0.00 0.00 0.00 2.44
506 507 3.892588 AGGTATTCGGGCAAAAAGACAAA 59.107 39.130 0.00 0.00 0.00 2.83
507 508 3.492337 AGGTATTCGGGCAAAAAGACAA 58.508 40.909 0.00 0.00 0.00 3.18
508 509 3.149005 AGGTATTCGGGCAAAAAGACA 57.851 42.857 0.00 0.00 0.00 3.41
509 510 4.514781 AAAGGTATTCGGGCAAAAAGAC 57.485 40.909 0.00 0.00 0.00 3.01
510 511 4.021807 GGAAAAGGTATTCGGGCAAAAAGA 60.022 41.667 0.00 0.00 0.00 2.52
511 512 4.021456 AGGAAAAGGTATTCGGGCAAAAAG 60.021 41.667 0.00 0.00 0.00 2.27
512 513 3.898741 AGGAAAAGGTATTCGGGCAAAAA 59.101 39.130 0.00 0.00 0.00 1.94
513 514 3.257127 CAGGAAAAGGTATTCGGGCAAAA 59.743 43.478 0.00 0.00 0.00 2.44
514 515 2.823154 CAGGAAAAGGTATTCGGGCAAA 59.177 45.455 0.00 0.00 0.00 3.68
515 516 2.442413 CAGGAAAAGGTATTCGGGCAA 58.558 47.619 0.00 0.00 0.00 4.52
516 517 1.340600 CCAGGAAAAGGTATTCGGGCA 60.341 52.381 0.00 0.00 0.00 5.36
517 518 1.340697 ACCAGGAAAAGGTATTCGGGC 60.341 52.381 0.00 0.00 37.67 6.13
518 519 2.801077 ACCAGGAAAAGGTATTCGGG 57.199 50.000 0.00 0.00 37.67 5.14
541 542 6.647067 ACTTCCGTGTGAAATTTTGTGAAAAA 59.353 30.769 0.00 0.00 33.47 1.94
542 543 6.159988 ACTTCCGTGTGAAATTTTGTGAAAA 58.840 32.000 0.00 0.00 31.06 2.29
543 544 5.715070 ACTTCCGTGTGAAATTTTGTGAAA 58.285 33.333 0.00 0.00 31.06 2.69
544 545 5.317733 ACTTCCGTGTGAAATTTTGTGAA 57.682 34.783 0.00 0.00 31.06 3.18
545 546 4.974368 ACTTCCGTGTGAAATTTTGTGA 57.026 36.364 0.00 0.00 31.06 3.58
546 547 5.907391 GTCTACTTCCGTGTGAAATTTTGTG 59.093 40.000 0.00 0.00 31.06 3.33
547 548 5.277154 CGTCTACTTCCGTGTGAAATTTTGT 60.277 40.000 0.00 0.00 31.06 2.83
548 549 5.137403 CGTCTACTTCCGTGTGAAATTTTG 58.863 41.667 0.00 0.00 31.06 2.44
549 550 4.212636 CCGTCTACTTCCGTGTGAAATTTT 59.787 41.667 0.00 0.00 31.06 1.82
550 551 3.744426 CCGTCTACTTCCGTGTGAAATTT 59.256 43.478 0.00 0.00 31.06 1.82
551 552 3.323243 CCGTCTACTTCCGTGTGAAATT 58.677 45.455 0.00 0.00 31.06 1.82
552 553 2.353406 CCCGTCTACTTCCGTGTGAAAT 60.353 50.000 0.00 0.00 31.06 2.17
553 554 1.000060 CCCGTCTACTTCCGTGTGAAA 60.000 52.381 0.00 0.00 31.06 2.69
554 555 0.599558 CCCGTCTACTTCCGTGTGAA 59.400 55.000 0.00 0.00 0.00 3.18
555 556 0.250858 TCCCGTCTACTTCCGTGTGA 60.251 55.000 0.00 0.00 0.00 3.58
556 557 0.109412 GTCCCGTCTACTTCCGTGTG 60.109 60.000 0.00 0.00 0.00 3.82
557 558 1.246737 GGTCCCGTCTACTTCCGTGT 61.247 60.000 0.00 0.00 0.00 4.49
558 559 1.509923 GGTCCCGTCTACTTCCGTG 59.490 63.158 0.00 0.00 0.00 4.94
559 560 1.680314 GGGTCCCGTCTACTTCCGT 60.680 63.158 0.00 0.00 0.00 4.69
560 561 2.421399 GGGGTCCCGTCTACTTCCG 61.421 68.421 0.48 0.00 0.00 4.30
561 562 1.305549 TGGGGTCCCGTCTACTTCC 60.306 63.158 0.48 0.00 39.42 3.46
562 563 0.324091 TCTGGGGTCCCGTCTACTTC 60.324 60.000 0.48 0.00 39.42 3.01
563 564 0.338814 ATCTGGGGTCCCGTCTACTT 59.661 55.000 0.48 0.00 39.42 2.24
564 565 0.338814 AATCTGGGGTCCCGTCTACT 59.661 55.000 0.48 0.00 39.42 2.57
565 566 1.134491 CAAATCTGGGGTCCCGTCTAC 60.134 57.143 0.48 0.00 39.42 2.59
566 567 1.200519 CAAATCTGGGGTCCCGTCTA 58.799 55.000 0.48 0.00 39.42 2.59
567 568 0.546747 TCAAATCTGGGGTCCCGTCT 60.547 55.000 0.48 0.00 39.42 4.18
568 569 0.546598 ATCAAATCTGGGGTCCCGTC 59.453 55.000 0.48 0.00 39.42 4.79
569 570 1.887797 TATCAAATCTGGGGTCCCGT 58.112 50.000 0.48 0.00 39.42 5.28
570 571 2.290323 GGATATCAAATCTGGGGTCCCG 60.290 54.545 4.83 0.00 39.42 5.14
571 572 2.041755 GGGATATCAAATCTGGGGTCCC 59.958 54.545 4.83 0.00 37.49 4.46
572 573 2.716424 TGGGATATCAAATCTGGGGTCC 59.284 50.000 4.83 0.00 0.00 4.46
573 574 4.453480 TTGGGATATCAAATCTGGGGTC 57.547 45.455 4.83 0.00 0.00 4.46
574 575 4.898014 TTTGGGATATCAAATCTGGGGT 57.102 40.909 4.83 0.00 32.39 4.95
575 576 6.080009 AGATTTTGGGATATCAAATCTGGGG 58.920 40.000 20.51 0.00 36.63 4.96
576 577 6.779049 TGAGATTTTGGGATATCAAATCTGGG 59.221 38.462 23.84 0.00 36.63 4.45
577 578 7.828508 TGAGATTTTGGGATATCAAATCTGG 57.171 36.000 23.84 0.00 36.63 3.86
621 622 9.549509 CGAACATTAAATTCAAAAGAATACCGA 57.450 29.630 4.31 0.00 0.00 4.69
622 623 9.337091 ACGAACATTAAATTCAAAAGAATACCG 57.663 29.630 0.00 0.00 0.00 4.02
629 630 9.730420 CCCCTATACGAACATTAAATTCAAAAG 57.270 33.333 0.00 0.00 0.00 2.27
630 631 9.245481 ACCCCTATACGAACATTAAATTCAAAA 57.755 29.630 0.00 0.00 0.00 2.44
631 632 8.679100 CACCCCTATACGAACATTAAATTCAAA 58.321 33.333 0.00 0.00 0.00 2.69
632 633 7.830201 ACACCCCTATACGAACATTAAATTCAA 59.170 33.333 0.00 0.00 0.00 2.69
633 634 7.281324 CACACCCCTATACGAACATTAAATTCA 59.719 37.037 0.00 0.00 0.00 2.57
634 635 7.255001 CCACACCCCTATACGAACATTAAATTC 60.255 40.741 0.00 0.00 0.00 2.17
635 636 6.544564 CCACACCCCTATACGAACATTAAATT 59.455 38.462 0.00 0.00 0.00 1.82
636 637 6.059484 CCACACCCCTATACGAACATTAAAT 58.941 40.000 0.00 0.00 0.00 1.40
637 638 5.189342 TCCACACCCCTATACGAACATTAAA 59.811 40.000 0.00 0.00 0.00 1.52
638 639 4.715792 TCCACACCCCTATACGAACATTAA 59.284 41.667 0.00 0.00 0.00 1.40
639 640 4.288398 TCCACACCCCTATACGAACATTA 58.712 43.478 0.00 0.00 0.00 1.90
640 641 3.109151 TCCACACCCCTATACGAACATT 58.891 45.455 0.00 0.00 0.00 2.71
641 642 2.698797 CTCCACACCCCTATACGAACAT 59.301 50.000 0.00 0.00 0.00 2.71
642 643 2.104967 CTCCACACCCCTATACGAACA 58.895 52.381 0.00 0.00 0.00 3.18
643 644 1.202498 GCTCCACACCCCTATACGAAC 60.202 57.143 0.00 0.00 0.00 3.95
644 645 1.117150 GCTCCACACCCCTATACGAA 58.883 55.000 0.00 0.00 0.00 3.85
645 646 0.032912 TGCTCCACACCCCTATACGA 60.033 55.000 0.00 0.00 0.00 3.43
646 647 0.104304 GTGCTCCACACCCCTATACG 59.896 60.000 0.00 0.00 44.02 3.06
656 657 0.618107 TAATACCCGGGTGCTCCACA 60.618 55.000 36.97 15.22 35.86 4.17
657 658 0.179065 GTAATACCCGGGTGCTCCAC 60.179 60.000 36.97 20.95 34.36 4.02
658 659 0.618107 TGTAATACCCGGGTGCTCCA 60.618 55.000 36.97 23.02 34.36 3.86
659 660 0.542805 TTGTAATACCCGGGTGCTCC 59.457 55.000 36.97 20.70 0.00 4.70
660 661 2.406596 TTTGTAATACCCGGGTGCTC 57.593 50.000 36.97 22.03 0.00 4.26
661 662 2.422377 GGATTTGTAATACCCGGGTGCT 60.422 50.000 36.97 24.08 0.00 4.40
662 663 1.951602 GGATTTGTAATACCCGGGTGC 59.048 52.381 36.97 22.05 0.00 5.01
663 664 2.215196 CGGATTTGTAATACCCGGGTG 58.785 52.381 36.97 10.82 36.81 4.61
664 665 1.475571 GCGGATTTGTAATACCCGGGT 60.476 52.381 32.66 32.66 40.44 5.28
665 666 1.202722 AGCGGATTTGTAATACCCGGG 60.203 52.381 22.25 22.25 40.44 5.73
666 667 2.249844 AGCGGATTTGTAATACCCGG 57.750 50.000 0.00 0.00 40.44 5.73
667 668 2.546789 GGAAGCGGATTTGTAATACCCG 59.453 50.000 0.00 0.00 42.74 5.28
668 669 3.547746 TGGAAGCGGATTTGTAATACCC 58.452 45.455 0.00 0.00 0.00 3.69
669 670 4.819630 TCATGGAAGCGGATTTGTAATACC 59.180 41.667 0.00 0.00 0.00 2.73
670 671 6.560253 ATCATGGAAGCGGATTTGTAATAC 57.440 37.500 0.00 0.00 0.00 1.89
671 672 7.450074 AGTATCATGGAAGCGGATTTGTAATA 58.550 34.615 0.00 0.00 0.00 0.98
672 673 6.299141 AGTATCATGGAAGCGGATTTGTAAT 58.701 36.000 0.00 0.00 0.00 1.89
673 674 5.680619 AGTATCATGGAAGCGGATTTGTAA 58.319 37.500 0.00 0.00 0.00 2.41
674 675 5.290493 AGTATCATGGAAGCGGATTTGTA 57.710 39.130 0.00 0.00 0.00 2.41
675 676 4.156455 AGTATCATGGAAGCGGATTTGT 57.844 40.909 0.00 0.00 0.00 2.83
676 677 4.452455 GGTAGTATCATGGAAGCGGATTTG 59.548 45.833 0.00 0.00 0.00 2.32
677 678 4.505039 GGGTAGTATCATGGAAGCGGATTT 60.505 45.833 0.00 0.00 0.00 2.17
678 679 3.008049 GGGTAGTATCATGGAAGCGGATT 59.992 47.826 0.00 0.00 0.00 3.01
679 680 2.567615 GGGTAGTATCATGGAAGCGGAT 59.432 50.000 0.00 0.00 0.00 4.18
680 681 1.968493 GGGTAGTATCATGGAAGCGGA 59.032 52.381 0.00 0.00 0.00 5.54
681 682 1.691976 TGGGTAGTATCATGGAAGCGG 59.308 52.381 0.00 0.00 0.00 5.52
682 683 3.685139 ATGGGTAGTATCATGGAAGCG 57.315 47.619 0.00 0.00 0.00 4.68
683 684 5.865085 TGTAATGGGTAGTATCATGGAAGC 58.135 41.667 0.00 0.00 0.00 3.86
684 685 5.934625 GCTGTAATGGGTAGTATCATGGAAG 59.065 44.000 0.00 0.00 0.00 3.46
685 686 5.221843 GGCTGTAATGGGTAGTATCATGGAA 60.222 44.000 0.00 0.00 0.00 3.53
686 687 4.286032 GGCTGTAATGGGTAGTATCATGGA 59.714 45.833 0.00 0.00 0.00 3.41
687 688 4.041567 TGGCTGTAATGGGTAGTATCATGG 59.958 45.833 0.00 0.00 0.00 3.66
688 689 5.227569 TGGCTGTAATGGGTAGTATCATG 57.772 43.478 0.00 0.00 0.00 3.07
695 696 0.839946 AGGCTGGCTGTAATGGGTAG 59.160 55.000 1.67 0.00 0.00 3.18
705 706 0.604780 ATGCGCTATAAGGCTGGCTG 60.605 55.000 9.73 0.00 0.00 4.85
717 718 2.291365 ACATTCTTGATGCATGCGCTA 58.709 42.857 14.09 3.82 39.47 4.26
718 719 1.100510 ACATTCTTGATGCATGCGCT 58.899 45.000 14.09 2.18 39.47 5.92
719 720 2.647337 CTACATTCTTGATGCATGCGC 58.353 47.619 14.09 0.00 39.47 6.09
720 721 2.647337 GCTACATTCTTGATGCATGCG 58.353 47.619 14.09 0.00 39.47 4.73
749 750 4.036734 CGATTAATGTGGTTGATCCCTTGG 59.963 45.833 0.00 0.00 31.06 3.61
830 831 5.407407 ACACAGACGGAGATAACTGAATT 57.593 39.130 0.00 0.00 34.88 2.17
904 915 4.813750 TCAGTCAGATGCTCAAATCAGA 57.186 40.909 0.00 0.00 0.00 3.27
910 921 4.222366 AGTTGAGATCAGTCAGATGCTCAA 59.778 41.667 0.00 0.00 42.23 3.02
915 926 4.335037 TCGAGAGTTGAGATCAGTCAGATG 59.665 45.833 0.00 0.00 37.00 2.90
923 934 2.096657 CGAAGCTCGAGAGTTGAGATCA 59.903 50.000 18.75 0.00 43.74 2.92
925 936 2.360844 TCGAAGCTCGAGAGTTGAGAT 58.639 47.619 18.75 0.00 44.82 2.75
944 955 3.526931 TGGATCGATCAGTGAGGTTTC 57.473 47.619 25.93 5.95 0.00 2.78
958 969 0.811616 GGTGTGCTAGGCTTGGATCG 60.812 60.000 0.00 0.00 0.00 3.69
966 977 0.811281 GGAATTGTGGTGTGCTAGGC 59.189 55.000 0.00 0.00 0.00 3.93
967 978 1.812571 GTGGAATTGTGGTGTGCTAGG 59.187 52.381 0.00 0.00 0.00 3.02
969 980 2.647683 TGTGGAATTGTGGTGTGCTA 57.352 45.000 0.00 0.00 0.00 3.49
979 990 1.606224 GGCTGCTGGTTTGTGGAATTG 60.606 52.381 0.00 0.00 0.00 2.32
980 991 0.681175 GGCTGCTGGTTTGTGGAATT 59.319 50.000 0.00 0.00 0.00 2.17
981 992 0.469705 TGGCTGCTGGTTTGTGGAAT 60.470 50.000 0.00 0.00 0.00 3.01
982 993 0.469705 ATGGCTGCTGGTTTGTGGAA 60.470 50.000 0.00 0.00 0.00 3.53
983 994 1.153524 ATGGCTGCTGGTTTGTGGA 59.846 52.632 0.00 0.00 0.00 4.02
984 995 1.180456 TCATGGCTGCTGGTTTGTGG 61.180 55.000 0.00 0.00 0.00 4.17
985 996 0.242825 CTCATGGCTGCTGGTTTGTG 59.757 55.000 0.00 0.00 0.00 3.33
986 997 0.896940 CCTCATGGCTGCTGGTTTGT 60.897 55.000 0.00 0.00 0.00 2.83
1029 1040 1.146041 GTAGATGATGGCGGCCACA 59.854 57.895 26.48 23.07 35.80 4.17
1174 1185 0.550914 ACCACCTTGCTGAACCTGAA 59.449 50.000 0.00 0.00 0.00 3.02
1306 1317 2.563427 GAGCTTGCGCCCTTTGTC 59.437 61.111 4.18 0.00 36.60 3.18
1518 1535 5.598417 ACTTTTTCCACCAGTTAGCTCAAAT 59.402 36.000 0.00 0.00 0.00 2.32
1540 1557 3.116551 AGAGGGAGTATAAGGCATCCACT 60.117 47.826 0.00 0.00 33.24 4.00
1574 1591 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
1575 1592 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
1576 1593 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
1577 1594 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
1578 1595 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
1579 1596 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
1606 1623 9.543783 CCTCCGTAAACTAATATAAGAGCTTTT 57.456 33.333 0.00 0.00 0.00 2.27
1607 1624 8.148999 CCCTCCGTAAACTAATATAAGAGCTTT 58.851 37.037 0.00 0.00 0.00 3.51
1608 1625 7.508296 TCCCTCCGTAAACTAATATAAGAGCTT 59.492 37.037 0.00 0.00 0.00 3.74
1610 1627 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1611 1628 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1612 1629 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
1613 1630 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
1616 1633 8.220559 TGTAGTACTCCCTCCGTAAACTAATAT 58.779 37.037 0.00 0.00 0.00 1.28
1619 1636 5.815581 TGTAGTACTCCCTCCGTAAACTAA 58.184 41.667 0.00 0.00 0.00 2.24
1622 1639 5.588958 AATGTAGTACTCCCTCCGTAAAC 57.411 43.478 0.00 0.00 0.00 2.01
1623 1640 6.211184 TGAAAATGTAGTACTCCCTCCGTAAA 59.789 38.462 0.00 0.00 0.00 2.01
1624 1641 5.716228 TGAAAATGTAGTACTCCCTCCGTAA 59.284 40.000 0.00 0.00 0.00 3.18
1625 1642 5.263599 TGAAAATGTAGTACTCCCTCCGTA 58.736 41.667 0.00 0.00 0.00 4.02
1653 1836 1.228862 AACATTGGTGCACCCCCTC 60.229 57.895 32.62 8.33 34.29 4.30
1669 1852 6.683974 ATTGTACTACATTGAGATGGCAAC 57.316 37.500 0.00 0.00 37.60 4.17
1725 1991 9.315525 ACTTTTTGTAGAGAGAACTGAACTTAC 57.684 33.333 0.00 0.00 0.00 2.34
1770 2036 7.553881 TGGTGTAGATAGCATAAAAGCTTTC 57.446 36.000 13.10 0.00 43.70 2.62
1816 2082 0.329596 AGAACCCAGATGCCTGTTCC 59.670 55.000 0.00 0.00 38.74 3.62
1944 2210 3.681897 TCGAAGAGAAAGATCAAGCAAGC 59.318 43.478 0.00 0.00 0.00 4.01
2183 2449 9.264782 CTAAACTCAATTTTGCAAAGTGTTTTG 57.735 29.630 23.38 19.75 45.17 2.44
2188 2454 8.807667 AGATCTAAACTCAATTTTGCAAAGTG 57.192 30.769 12.41 14.17 0.00 3.16
2211 2478 7.959152 TGTATGTCCAGGGATATACCATTTAGA 59.041 37.037 23.94 8.24 43.76 2.10
2218 2485 6.042781 TGTTCTTGTATGTCCAGGGATATACC 59.957 42.308 23.94 13.50 43.76 2.73
2220 2487 7.872061 ATGTTCTTGTATGTCCAGGGATATA 57.128 36.000 1.10 1.10 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.