Multiple sequence alignment - TraesCS4B01G252200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G252200 chr4B 100.000 2537 0 0 1 2537 518139729 518142265 0.000000e+00 4686.0
1 TraesCS4B01G252200 chr4B 92.593 594 41 3 1 592 550471620 550472212 0.000000e+00 850.0
2 TraesCS4B01G252200 chr4B 96.825 63 2 0 2383 2445 209109048 209108986 3.450000e-19 106.0
3 TraesCS4B01G252200 chr4B 98.333 60 1 0 2383 2442 495477201 495477260 3.450000e-19 106.0
4 TraesCS4B01G252200 chr4D 90.124 1286 78 19 672 1921 421318780 421320052 0.000000e+00 1626.0
5 TraesCS4B01G252200 chr4D 88.053 226 20 5 2088 2307 421320294 421320518 6.960000e-66 261.0
6 TraesCS4B01G252200 chr4D 100.000 36 0 0 645 680 421315167 421315202 1.630000e-07 67.6
7 TraesCS4B01G252200 chr4A 91.667 780 43 7 762 1528 43224823 43225593 0.000000e+00 1061.0
8 TraesCS4B01G252200 chr4A 89.292 607 60 5 1 605 29498912 29499515 0.000000e+00 756.0
9 TraesCS4B01G252200 chr4A 83.251 406 29 16 1521 1898 42833599 42833205 1.120000e-88 337.0
10 TraesCS4B01G252200 chr4A 92.308 182 10 4 591 770 43211343 43211522 3.240000e-64 255.0
11 TraesCS4B01G252200 chr4A 97.222 36 1 0 1887 1922 42832978 42832943 7.580000e-06 62.1
12 TraesCS4B01G252200 chr1D 92.230 592 43 3 1 590 345403807 345404397 0.000000e+00 835.0
13 TraesCS4B01G252200 chr6B 92.088 594 40 4 1 591 150628279 150628868 0.000000e+00 830.0
14 TraesCS4B01G252200 chr6B 98.413 63 1 0 2383 2445 40842141 40842079 7.420000e-21 111.0
15 TraesCS4B01G252200 chr6B 98.361 61 1 0 2383 2443 247383498 247383558 9.600000e-20 108.0
16 TraesCS4B01G252200 chr7B 91.400 593 49 2 1 591 593407909 593407317 0.000000e+00 811.0
17 TraesCS4B01G252200 chr6D 90.323 589 53 4 1 586 140221167 140221754 0.000000e+00 769.0
18 TraesCS4B01G252200 chr6D 96.825 63 2 0 2383 2445 32725190 32725128 3.450000e-19 106.0
19 TraesCS4B01G252200 chr6D 96.825 63 2 0 2383 2445 108487720 108487658 3.450000e-19 106.0
20 TraesCS4B01G252200 chr1A 90.169 590 54 3 1 589 239134437 239135023 0.000000e+00 765.0
21 TraesCS4B01G252200 chr1A 96.825 63 2 0 2383 2445 278523704 278523642 3.450000e-19 106.0
22 TraesCS4B01G252200 chr5D 90.068 584 52 5 1 579 368575277 368574695 0.000000e+00 752.0
23 TraesCS4B01G252200 chr3A 88.908 595 61 4 1 591 704699977 704699384 0.000000e+00 728.0
24 TraesCS4B01G252200 chr3D 98.413 63 1 0 2383 2445 523755202 523755140 7.420000e-21 111.0
25 TraesCS4B01G252200 chrUn 96.825 63 2 0 2383 2445 217910179 217910117 3.450000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G252200 chr4B 518139729 518142265 2536 False 4686.000000 4686 100.000000 1 2537 1 chr4B.!!$F2 2536
1 TraesCS4B01G252200 chr4B 550471620 550472212 592 False 850.000000 850 92.593000 1 592 1 chr4B.!!$F3 591
2 TraesCS4B01G252200 chr4D 421315167 421320518 5351 False 651.533333 1626 92.725667 645 2307 3 chr4D.!!$F1 1662
3 TraesCS4B01G252200 chr4A 43224823 43225593 770 False 1061.000000 1061 91.667000 762 1528 1 chr4A.!!$F3 766
4 TraesCS4B01G252200 chr4A 29498912 29499515 603 False 756.000000 756 89.292000 1 605 1 chr4A.!!$F1 604
5 TraesCS4B01G252200 chr1D 345403807 345404397 590 False 835.000000 835 92.230000 1 590 1 chr1D.!!$F1 589
6 TraesCS4B01G252200 chr6B 150628279 150628868 589 False 830.000000 830 92.088000 1 591 1 chr6B.!!$F1 590
7 TraesCS4B01G252200 chr7B 593407317 593407909 592 True 811.000000 811 91.400000 1 591 1 chr7B.!!$R1 590
8 TraesCS4B01G252200 chr6D 140221167 140221754 587 False 769.000000 769 90.323000 1 586 1 chr6D.!!$F1 585
9 TraesCS4B01G252200 chr1A 239134437 239135023 586 False 765.000000 765 90.169000 1 589 1 chr1A.!!$F1 588
10 TraesCS4B01G252200 chr5D 368574695 368575277 582 True 752.000000 752 90.068000 1 579 1 chr5D.!!$R1 578
11 TraesCS4B01G252200 chr3A 704699384 704699977 593 True 728.000000 728 88.908000 1 591 1 chr3A.!!$R1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 303 0.109086 ACTCACTCATGCGGACTTCG 60.109 55.0 0.0 0.0 42.76 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1961 5599 0.106918 TATTGTGGGGCATTCGGTCC 60.107 55.0 0.0 0.0 42.12 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 2.094099 GCTTGCAAAATTGTTATGGCGG 59.906 45.455 0.00 0.00 0.00 6.13
109 111 4.668289 GAGCATAAACACGTTATTTGGGG 58.332 43.478 5.07 0.00 29.38 4.96
122 124 0.251386 TTTGGGGCGTGGCTTAATGA 60.251 50.000 0.00 0.00 0.00 2.57
210 213 8.566260 GGAACAGGAGAAATGATATGATCTTTG 58.434 37.037 0.00 0.00 0.00 2.77
300 303 0.109086 ACTCACTCATGCGGACTTCG 60.109 55.000 0.00 0.00 42.76 3.79
337 340 3.365535 GTGCAACCGCTGGGAAAT 58.634 55.556 0.00 0.00 39.64 2.17
492 499 4.537135 TCTCTTTGCTCGGTTTATGAGT 57.463 40.909 0.00 0.00 35.85 3.41
626 634 8.893563 AAAACCATTTTCATAGGACCAATAGA 57.106 30.769 0.00 0.00 0.00 1.98
627 635 9.492730 AAAACCATTTTCATAGGACCAATAGAT 57.507 29.630 0.00 0.00 0.00 1.98
628 636 8.697507 AACCATTTTCATAGGACCAATAGATC 57.302 34.615 0.00 0.00 0.00 2.75
629 637 6.936900 ACCATTTTCATAGGACCAATAGATCG 59.063 38.462 0.00 0.00 0.00 3.69
630 638 6.128172 CCATTTTCATAGGACCAATAGATCGC 60.128 42.308 0.00 0.00 0.00 4.58
631 639 5.545063 TTTCATAGGACCAATAGATCGCA 57.455 39.130 0.00 0.00 0.00 5.10
632 640 5.745312 TTCATAGGACCAATAGATCGCAT 57.255 39.130 0.00 0.00 0.00 4.73
633 641 5.330455 TCATAGGACCAATAGATCGCATC 57.670 43.478 0.00 0.00 0.00 3.91
634 642 5.019470 TCATAGGACCAATAGATCGCATCT 58.981 41.667 0.00 4.45 43.33 2.90
635 643 3.951775 AGGACCAATAGATCGCATCTC 57.048 47.619 0.00 0.00 40.76 2.75
636 644 2.230025 AGGACCAATAGATCGCATCTCG 59.770 50.000 0.00 0.00 40.76 4.04
637 645 2.600731 GACCAATAGATCGCATCTCGG 58.399 52.381 2.47 5.31 40.76 4.63
638 646 2.229062 GACCAATAGATCGCATCTCGGA 59.771 50.000 2.47 0.00 40.76 4.55
639 647 2.029828 ACCAATAGATCGCATCTCGGAC 60.030 50.000 2.47 0.00 40.76 4.79
640 648 2.245942 CAATAGATCGCATCTCGGACG 58.754 52.381 2.47 0.00 40.76 4.79
641 649 1.809684 ATAGATCGCATCTCGGACGA 58.190 50.000 0.00 0.00 40.76 4.20
643 651 0.955178 AGATCGCATCTCGGACGATT 59.045 50.000 3.26 0.00 45.82 3.34
682 4276 7.661437 TCACTCATAGCAACTTTGTATGAAAGT 59.339 33.333 11.79 0.00 41.82 2.66
698 4292 8.994170 TGTATGAAAGTCGAACATTTTCATGTA 58.006 29.630 24.06 16.01 45.81 2.29
703 4297 6.045072 AGTCGAACATTTTCATGTAGGGTA 57.955 37.500 0.00 0.00 43.34 3.69
743 4337 6.645003 CCATCGAATAATTGTCACTAATCCGA 59.355 38.462 0.00 0.00 0.00 4.55
744 4338 7.170828 CCATCGAATAATTGTCACTAATCCGAA 59.829 37.037 0.00 0.00 0.00 4.30
874 4472 8.439971 ACAAGATAGATATTGCCTTACCATCAA 58.560 33.333 0.00 0.00 32.53 2.57
949 4552 9.234827 CATCATGTCCTGCCAATCTATTTATAA 57.765 33.333 0.00 0.00 0.00 0.98
993 4596 3.209097 ACCACGCCACAACAGTGC 61.209 61.111 0.00 0.00 34.79 4.40
1011 4614 0.250081 GCCCTCGACTCATCCCATTC 60.250 60.000 0.00 0.00 0.00 2.67
1126 4734 0.099436 GGCATCGTCATTTGCTCCAC 59.901 55.000 0.00 0.00 38.88 4.02
1131 4739 0.374758 CGTCATTTGCTCCACCATCG 59.625 55.000 0.00 0.00 0.00 3.84
1320 4928 3.496155 GTTAACTACCGTGTCTTCCTCG 58.504 50.000 0.00 0.00 0.00 4.63
1411 5019 1.807573 GCAAGCTCGTCTCCTTCGG 60.808 63.158 0.00 0.00 0.00 4.30
1418 5026 3.703127 GTCTCCTTCGGCCCGGTT 61.703 66.667 1.90 0.00 0.00 4.44
1421 5029 1.069258 CTCCTTCGGCCCGGTTATC 59.931 63.158 1.90 0.00 0.00 1.75
1461 5069 3.955551 TGTATATGTAACTGCGGAGGTCA 59.044 43.478 9.36 2.57 0.00 4.02
1489 5097 9.489084 AACAAGATATATTTATCAAGCGTGCTA 57.511 29.630 6.04 0.00 37.31 3.49
1509 5117 6.088085 GTGCTATCGTTTCTTTGATTGTTTGG 59.912 38.462 0.00 0.00 0.00 3.28
1514 5122 4.150451 CGTTTCTTTGATTGTTTGGCATCC 59.850 41.667 0.00 0.00 0.00 3.51
1524 5132 7.032580 TGATTGTTTGGCATCCGTAATAAAAG 58.967 34.615 0.00 0.00 0.00 2.27
1529 5139 6.827586 TTGGCATCCGTAATAAAAGAAAGT 57.172 33.333 0.00 0.00 0.00 2.66
1533 5143 8.962679 TGGCATCCGTAATAAAAGAAAGTTAAT 58.037 29.630 0.00 0.00 0.00 1.40
1601 5211 1.003839 CCGTGGCAGTCCTAGCAAA 60.004 57.895 0.00 0.00 0.00 3.68
1602 5212 1.021390 CCGTGGCAGTCCTAGCAAAG 61.021 60.000 0.00 0.00 0.00 2.77
1603 5213 1.639298 CGTGGCAGTCCTAGCAAAGC 61.639 60.000 0.00 0.00 0.00 3.51
1604 5214 0.606401 GTGGCAGTCCTAGCAAAGCA 60.606 55.000 0.00 0.00 0.00 3.91
1607 5217 1.652167 GCAGTCCTAGCAAAGCAGCC 61.652 60.000 0.00 0.00 34.23 4.85
1608 5218 1.078848 AGTCCTAGCAAAGCAGCCG 60.079 57.895 0.00 0.00 34.23 5.52
1609 5219 1.079127 GTCCTAGCAAAGCAGCCGA 60.079 57.895 0.00 0.00 34.23 5.54
1610 5220 1.086634 GTCCTAGCAAAGCAGCCGAG 61.087 60.000 0.00 0.00 34.23 4.63
1614 5224 2.244117 TAGCAAAGCAGCCGAGGAGG 62.244 60.000 0.00 0.00 44.97 4.30
1646 5256 1.061411 CTATCGTCGCCGTCGTCAA 59.939 57.895 3.41 0.00 36.96 3.18
1684 5300 2.443577 TGGCAAGCCAAACTGCCA 60.444 55.556 12.11 11.61 44.88 4.92
1685 5301 2.062777 TGGCAAGCCAAACTGCCAA 61.063 52.632 12.11 0.00 44.44 4.52
1686 5302 1.145819 GGCAAGCCAAACTGCCAAA 59.854 52.632 6.14 0.00 40.36 3.28
1734 5350 3.132139 AGAGCGCGTCGAAGGCTA 61.132 61.111 8.43 0.00 37.10 3.93
1738 5354 2.582498 CGCGTCGAAGGCTAAGGG 60.582 66.667 0.00 0.00 0.00 3.95
1739 5355 2.890961 GCGTCGAAGGCTAAGGGC 60.891 66.667 0.00 0.00 40.90 5.19
1740 5356 2.577059 CGTCGAAGGCTAAGGGCA 59.423 61.111 0.00 0.00 44.01 5.36
1741 5357 1.144057 CGTCGAAGGCTAAGGGCAT 59.856 57.895 0.00 0.00 44.01 4.40
1742 5358 1.154205 CGTCGAAGGCTAAGGGCATG 61.154 60.000 0.00 0.00 44.01 4.06
1743 5359 1.153168 TCGAAGGCTAAGGGCATGC 60.153 57.895 9.90 9.90 44.01 4.06
1744 5360 1.153086 CGAAGGCTAAGGGCATGCT 60.153 57.895 18.92 0.00 44.01 3.79
1745 5361 1.162800 CGAAGGCTAAGGGCATGCTC 61.163 60.000 18.92 15.06 44.01 4.26
1746 5362 0.182299 GAAGGCTAAGGGCATGCTCT 59.818 55.000 16.33 16.33 44.01 4.09
1747 5363 0.182299 AAGGCTAAGGGCATGCTCTC 59.818 55.000 23.07 8.55 44.01 3.20
1748 5364 0.984961 AGGCTAAGGGCATGCTCTCA 60.985 55.000 23.07 5.00 44.01 3.27
1758 5380 1.329906 GCATGCTCTCATTTCAGACCG 59.670 52.381 11.37 0.00 0.00 4.79
1789 5427 2.989824 AGCGACGGCCGGCTATAT 60.990 61.111 31.71 9.09 41.24 0.86
1830 5468 6.929049 TCTTTATGTTTCGGAGATCGCATATT 59.071 34.615 0.00 0.00 39.05 1.28
1833 5471 9.863845 TTTATGTTTCGGAGATCGCATATTATA 57.136 29.630 0.00 0.00 39.05 0.98
1834 5472 7.993821 ATGTTTCGGAGATCGCATATTATAG 57.006 36.000 0.00 0.00 39.05 1.31
1835 5473 6.920817 TGTTTCGGAGATCGCATATTATAGT 58.079 36.000 0.00 0.00 39.05 2.12
1836 5474 8.047413 TGTTTCGGAGATCGCATATTATAGTA 57.953 34.615 0.00 0.00 39.05 1.82
1837 5475 8.182227 TGTTTCGGAGATCGCATATTATAGTAG 58.818 37.037 0.00 0.00 39.05 2.57
1883 5521 1.581934 TGAACGCTGCTATGCATACC 58.418 50.000 1.16 0.00 38.13 2.73
1884 5522 1.134551 TGAACGCTGCTATGCATACCA 60.135 47.619 1.16 1.55 38.13 3.25
1885 5523 2.146342 GAACGCTGCTATGCATACCAT 58.854 47.619 1.16 0.00 38.13 3.55
1891 5529 3.188048 GCTGCTATGCATACCATGACTTC 59.812 47.826 1.16 0.00 38.13 3.01
1892 5530 3.743521 TGCTATGCATACCATGACTTCC 58.256 45.455 1.16 0.00 35.34 3.46
1921 5559 6.037720 CCATGTTTGTACGATGCTATGGTTAA 59.962 38.462 0.00 0.00 31.50 2.01
1922 5560 7.255104 CCATGTTTGTACGATGCTATGGTTAAT 60.255 37.037 0.00 0.00 31.50 1.40
1923 5561 7.618502 TGTTTGTACGATGCTATGGTTAATT 57.381 32.000 0.00 0.00 0.00 1.40
1927 5565 5.989168 TGTACGATGCTATGGTTAATTCCAG 59.011 40.000 0.00 0.00 41.05 3.86
1928 5566 4.389374 ACGATGCTATGGTTAATTCCAGG 58.611 43.478 0.00 0.00 41.05 4.45
1929 5567 3.189287 CGATGCTATGGTTAATTCCAGGC 59.811 47.826 6.85 6.85 41.05 4.85
1930 5568 2.571212 TGCTATGGTTAATTCCAGGCG 58.429 47.619 8.39 0.00 41.05 5.52
1931 5569 2.171659 TGCTATGGTTAATTCCAGGCGA 59.828 45.455 0.00 0.00 41.05 5.54
1932 5570 2.548480 GCTATGGTTAATTCCAGGCGAC 59.452 50.000 0.00 0.00 41.05 5.19
1933 5571 2.052782 ATGGTTAATTCCAGGCGACC 57.947 50.000 0.00 0.00 41.05 4.79
1934 5572 0.693622 TGGTTAATTCCAGGCGACCA 59.306 50.000 0.00 0.00 34.99 4.02
1936 5574 2.506231 TGGTTAATTCCAGGCGACCATA 59.494 45.455 0.00 0.00 32.60 2.74
1937 5575 3.139077 GGTTAATTCCAGGCGACCATAG 58.861 50.000 0.00 0.00 0.00 2.23
1938 5576 3.139077 GTTAATTCCAGGCGACCATAGG 58.861 50.000 0.00 0.00 0.00 2.57
1939 5577 0.179018 AATTCCAGGCGACCATAGGC 60.179 55.000 0.00 0.00 0.00 3.93
1940 5578 1.056700 ATTCCAGGCGACCATAGGCT 61.057 55.000 0.00 0.00 45.83 4.58
1941 5579 0.397957 TTCCAGGCGACCATAGGCTA 60.398 55.000 0.00 0.00 42.91 3.93
1942 5580 0.397957 TCCAGGCGACCATAGGCTAA 60.398 55.000 0.00 0.00 42.91 3.09
1943 5581 0.249911 CCAGGCGACCATAGGCTAAC 60.250 60.000 0.00 0.00 42.91 2.34
1944 5582 0.597637 CAGGCGACCATAGGCTAACG 60.598 60.000 0.00 4.04 42.91 3.18
1945 5583 1.300697 GGCGACCATAGGCTAACGG 60.301 63.158 10.87 10.87 0.00 4.44
1946 5584 1.300697 GCGACCATAGGCTAACGGG 60.301 63.158 15.50 11.94 0.00 5.28
1947 5585 1.300697 CGACCATAGGCTAACGGGC 60.301 63.158 15.50 12.35 41.20 6.13
1977 5615 4.041762 GGGACCGAATGCCCCACA 62.042 66.667 0.00 0.00 39.89 4.17
1979 5617 1.379843 GGACCGAATGCCCCACAAT 60.380 57.895 0.00 0.00 0.00 2.71
1984 5670 1.202245 CCGAATGCCCCACAATAAACG 60.202 52.381 0.00 0.00 0.00 3.60
1986 5672 1.136110 GAATGCCCCACAATAAACGGG 59.864 52.381 0.00 0.00 39.92 5.28
1994 5680 1.199097 CACAATAAACGGGCCTGACAC 59.801 52.381 21.41 0.00 0.00 3.67
2009 5695 0.318614 GACACGGCACAAAACATGGG 60.319 55.000 0.00 0.00 34.65 4.00
2010 5696 0.753479 ACACGGCACAAAACATGGGA 60.753 50.000 0.00 0.00 32.54 4.37
2011 5697 0.039256 CACGGCACAAAACATGGGAG 60.039 55.000 0.00 0.00 32.54 4.30
2015 5701 1.974543 CACAAAACATGGGAGGCCC 59.025 57.895 0.00 0.00 45.71 5.80
2041 5727 1.552799 ATGAGGGCCATGTCGTGTCA 61.553 55.000 6.18 0.00 33.39 3.58
2073 5759 1.369692 CCCTCCGTACACAAGCACA 59.630 57.895 0.00 0.00 0.00 4.57
2101 5788 7.516943 GCATAAGAGAGCAACTAATTAACGGTC 60.517 40.741 0.00 0.00 0.00 4.79
2102 5789 4.421948 AGAGAGCAACTAATTAACGGTCG 58.578 43.478 0.00 0.00 0.00 4.79
2108 5823 2.897436 ACTAATTAACGGTCGGCCTTC 58.103 47.619 3.66 0.00 0.00 3.46
2156 5872 2.953821 CATGTGTGACAACCGGCC 59.046 61.111 0.00 0.00 0.00 6.13
2158 5874 2.829384 ATGTGTGACAACCGGCCCT 61.829 57.895 0.00 0.00 0.00 5.19
2172 5888 0.315251 GGCCCTTGTGCTTTTCAGTC 59.685 55.000 0.00 0.00 0.00 3.51
2286 6006 3.834799 GGCCTACCTCGACGGGTG 61.835 72.222 15.62 0.59 40.22 4.61
2312 6032 4.666532 GCAAGGCGTGTCGTGTGC 62.667 66.667 1.69 0.00 0.00 4.57
2317 6037 4.961511 GCGTGTCGTGTGCCAGGA 62.962 66.667 0.00 0.00 0.00 3.86
2318 6038 2.279851 CGTGTCGTGTGCCAGGAA 60.280 61.111 0.00 0.00 30.04 3.36
2319 6039 2.594962 CGTGTCGTGTGCCAGGAAC 61.595 63.158 0.00 0.00 30.04 3.62
2320 6040 2.279851 TGTCGTGTGCCAGGAACG 60.280 61.111 0.00 0.00 38.64 3.95
2321 6041 2.028484 GTCGTGTGCCAGGAACGA 59.972 61.111 8.05 8.05 43.50 3.85
2322 6042 2.028484 TCGTGTGCCAGGAACGAC 59.972 61.111 8.05 0.35 41.08 4.34
2323 6043 3.041940 CGTGTGCCAGGAACGACC 61.042 66.667 4.20 0.00 39.64 4.79
2324 6044 2.668550 GTGTGCCAGGAACGACCC 60.669 66.667 0.00 0.00 40.05 4.46
2325 6045 4.308458 TGTGCCAGGAACGACCCG 62.308 66.667 0.00 0.00 40.05 5.28
2326 6046 4.309950 GTGCCAGGAACGACCCGT 62.310 66.667 0.00 0.00 43.97 5.28
2339 6059 4.102035 ACGACCCGTTTAGTCTTGTATC 57.898 45.455 0.00 0.00 36.35 2.24
2340 6060 3.507233 ACGACCCGTTTAGTCTTGTATCA 59.493 43.478 0.00 0.00 36.35 2.15
2341 6061 4.159135 ACGACCCGTTTAGTCTTGTATCAT 59.841 41.667 0.00 0.00 36.35 2.45
2342 6062 5.357878 ACGACCCGTTTAGTCTTGTATCATA 59.642 40.000 0.00 0.00 36.35 2.15
2343 6063 5.684626 CGACCCGTTTAGTCTTGTATCATAC 59.315 44.000 0.00 0.00 31.83 2.39
2344 6064 5.585390 ACCCGTTTAGTCTTGTATCATACG 58.415 41.667 0.00 0.00 0.00 3.06
2345 6065 4.443394 CCCGTTTAGTCTTGTATCATACGC 59.557 45.833 0.00 0.00 0.00 4.42
2346 6066 5.038683 CCGTTTAGTCTTGTATCATACGCA 58.961 41.667 0.00 0.00 0.00 5.24
2347 6067 5.517411 CCGTTTAGTCTTGTATCATACGCAA 59.483 40.000 0.00 0.00 0.00 4.85
2348 6068 6.035220 CCGTTTAGTCTTGTATCATACGCAAA 59.965 38.462 0.00 0.00 0.00 3.68
2349 6069 7.254319 CCGTTTAGTCTTGTATCATACGCAAAT 60.254 37.037 0.00 0.00 0.00 2.32
2350 6070 8.114290 CGTTTAGTCTTGTATCATACGCAAATT 58.886 33.333 0.00 0.00 0.00 1.82
2351 6071 9.210426 GTTTAGTCTTGTATCATACGCAAATTG 57.790 33.333 0.00 0.00 0.00 2.32
2352 6072 6.363577 AGTCTTGTATCATACGCAAATTGG 57.636 37.500 0.00 0.00 0.00 3.16
2353 6073 6.112734 AGTCTTGTATCATACGCAAATTGGA 58.887 36.000 0.00 0.00 0.00 3.53
2354 6074 6.767902 AGTCTTGTATCATACGCAAATTGGAT 59.232 34.615 0.00 0.00 0.00 3.41
2355 6075 7.283127 AGTCTTGTATCATACGCAAATTGGATT 59.717 33.333 0.00 0.00 0.00 3.01
2356 6076 8.556194 GTCTTGTATCATACGCAAATTGGATTA 58.444 33.333 0.00 0.00 0.00 1.75
2357 6077 9.283768 TCTTGTATCATACGCAAATTGGATTAT 57.716 29.630 0.00 0.00 0.00 1.28
2360 6080 9.719355 TGTATCATACGCAAATTGGATTATAGT 57.281 29.630 0.00 0.00 0.00 2.12
2362 6082 7.346208 TCATACGCAAATTGGATTATAGTCG 57.654 36.000 0.00 0.00 0.00 4.18
2363 6083 4.468095 ACGCAAATTGGATTATAGTCGC 57.532 40.909 0.00 0.00 0.00 5.19
2364 6084 3.059868 ACGCAAATTGGATTATAGTCGCG 60.060 43.478 0.00 0.00 44.14 5.87
2365 6085 3.059868 CGCAAATTGGATTATAGTCGCGT 60.060 43.478 5.77 0.00 34.68 6.01
2366 6086 4.551990 CGCAAATTGGATTATAGTCGCGTT 60.552 41.667 5.77 0.00 34.68 4.84
2367 6087 4.904154 GCAAATTGGATTATAGTCGCGTTC 59.096 41.667 5.77 0.31 0.00 3.95
2368 6088 5.440685 CAAATTGGATTATAGTCGCGTTCC 58.559 41.667 5.77 3.35 0.00 3.62
2369 6089 3.804786 TTGGATTATAGTCGCGTTCCA 57.195 42.857 5.77 5.93 0.00 3.53
2370 6090 3.804786 TGGATTATAGTCGCGTTCCAA 57.195 42.857 5.77 0.00 30.62 3.53
2371 6091 3.713288 TGGATTATAGTCGCGTTCCAAG 58.287 45.455 5.77 0.00 30.62 3.61
2372 6092 3.131577 TGGATTATAGTCGCGTTCCAAGT 59.868 43.478 5.77 0.00 30.62 3.16
2373 6093 3.489785 GGATTATAGTCGCGTTCCAAGTG 59.510 47.826 5.77 0.00 0.00 3.16
2374 6094 3.581024 TTATAGTCGCGTTCCAAGTGT 57.419 42.857 5.77 0.00 0.00 3.55
2375 6095 1.710013 ATAGTCGCGTTCCAAGTGTG 58.290 50.000 5.77 0.00 0.00 3.82
2376 6096 0.386476 TAGTCGCGTTCCAAGTGTGT 59.614 50.000 5.77 0.00 0.00 3.72
2377 6097 0.461339 AGTCGCGTTCCAAGTGTGTT 60.461 50.000 5.77 0.00 0.00 3.32
2378 6098 0.375803 GTCGCGTTCCAAGTGTGTTT 59.624 50.000 5.77 0.00 0.00 2.83
2379 6099 0.375454 TCGCGTTCCAAGTGTGTTTG 59.625 50.000 5.77 0.00 0.00 2.93
2380 6100 0.375454 CGCGTTCCAAGTGTGTTTGA 59.625 50.000 0.00 0.00 0.00 2.69
2381 6101 1.822581 GCGTTCCAAGTGTGTTTGAC 58.177 50.000 0.00 0.00 0.00 3.18
2382 6102 1.400494 GCGTTCCAAGTGTGTTTGACT 59.600 47.619 0.00 0.00 0.00 3.41
2383 6103 2.791158 GCGTTCCAAGTGTGTTTGACTG 60.791 50.000 0.00 0.00 0.00 3.51
2384 6104 2.791158 CGTTCCAAGTGTGTTTGACTGC 60.791 50.000 0.00 0.00 0.00 4.40
2385 6105 2.121291 TCCAAGTGTGTTTGACTGCA 57.879 45.000 0.00 0.00 0.00 4.41
2386 6106 2.653726 TCCAAGTGTGTTTGACTGCAT 58.346 42.857 0.00 0.00 0.00 3.96
2387 6107 3.023119 TCCAAGTGTGTTTGACTGCATT 58.977 40.909 0.00 0.00 0.00 3.56
2388 6108 3.117794 CCAAGTGTGTTTGACTGCATTG 58.882 45.455 0.00 0.00 0.00 2.82
2389 6109 2.497107 AGTGTGTTTGACTGCATTGC 57.503 45.000 0.46 0.46 0.00 3.56
2390 6110 1.750206 AGTGTGTTTGACTGCATTGCA 59.250 42.857 11.50 11.50 36.92 4.08
2391 6111 1.854126 GTGTGTTTGACTGCATTGCAC 59.146 47.619 7.38 0.00 33.79 4.57
2392 6112 1.202394 TGTGTTTGACTGCATTGCACC 60.202 47.619 7.38 3.35 33.79 5.01
2393 6113 1.067516 GTGTTTGACTGCATTGCACCT 59.932 47.619 7.38 0.00 33.79 4.00
2394 6114 1.067364 TGTTTGACTGCATTGCACCTG 59.933 47.619 7.38 0.67 33.79 4.00
2395 6115 1.337703 GTTTGACTGCATTGCACCTGA 59.662 47.619 7.38 0.00 33.79 3.86
2396 6116 0.953727 TTGACTGCATTGCACCTGAC 59.046 50.000 7.38 0.00 33.79 3.51
2397 6117 0.109153 TGACTGCATTGCACCTGACT 59.891 50.000 7.38 0.00 33.79 3.41
2398 6118 0.520404 GACTGCATTGCACCTGACTG 59.480 55.000 7.38 0.00 33.79 3.51
2399 6119 0.179009 ACTGCATTGCACCTGACTGT 60.179 50.000 7.38 0.00 33.79 3.55
2400 6120 0.240145 CTGCATTGCACCTGACTGTG 59.760 55.000 7.38 0.00 39.29 3.66
2401 6121 0.179023 TGCATTGCACCTGACTGTGA 60.179 50.000 7.38 0.00 38.55 3.58
2402 6122 0.520404 GCATTGCACCTGACTGTGAG 59.480 55.000 3.15 0.00 38.55 3.51
2403 6123 1.162698 CATTGCACCTGACTGTGAGG 58.837 55.000 11.99 11.99 38.55 3.86
2404 6124 0.037303 ATTGCACCTGACTGTGAGGG 59.963 55.000 17.68 7.69 38.55 4.30
2405 6125 2.055689 TTGCACCTGACTGTGAGGGG 62.056 60.000 17.68 14.80 38.55 4.79
2406 6126 2.348998 CACCTGACTGTGAGGGGC 59.651 66.667 17.68 0.00 38.55 5.80
2407 6127 2.930562 ACCTGACTGTGAGGGGCC 60.931 66.667 17.68 0.00 34.56 5.80
2408 6128 2.608988 CCTGACTGTGAGGGGCCT 60.609 66.667 5.29 0.00 0.00 5.19
2409 6129 2.664081 CCTGACTGTGAGGGGCCTC 61.664 68.421 5.29 0.00 43.01 4.70
2410 6130 1.611851 CTGACTGTGAGGGGCCTCT 60.612 63.158 3.57 3.57 43.12 3.69
2411 6131 1.152030 TGACTGTGAGGGGCCTCTT 60.152 57.895 6.58 0.00 43.12 2.85
2412 6132 1.298014 GACTGTGAGGGGCCTCTTG 59.702 63.158 6.58 0.00 43.12 3.02
2413 6133 1.152030 ACTGTGAGGGGCCTCTTGA 60.152 57.895 6.58 0.00 43.12 3.02
2414 6134 0.548682 ACTGTGAGGGGCCTCTTGAT 60.549 55.000 6.58 0.00 43.12 2.57
2415 6135 1.273838 ACTGTGAGGGGCCTCTTGATA 60.274 52.381 6.58 0.00 43.12 2.15
2416 6136 1.139853 CTGTGAGGGGCCTCTTGATAC 59.860 57.143 6.58 4.87 43.12 2.24
2417 6137 0.470341 GTGAGGGGCCTCTTGATACC 59.530 60.000 6.58 0.00 43.12 2.73
2418 6138 0.343372 TGAGGGGCCTCTTGATACCT 59.657 55.000 6.58 0.00 43.12 3.08
2419 6139 1.274416 TGAGGGGCCTCTTGATACCTT 60.274 52.381 6.58 0.00 43.12 3.50
2420 6140 2.022428 TGAGGGGCCTCTTGATACCTTA 60.022 50.000 6.58 0.00 43.12 2.69
2421 6141 3.252351 GAGGGGCCTCTTGATACCTTAT 58.748 50.000 6.58 0.00 39.80 1.73
2422 6142 2.982488 AGGGGCCTCTTGATACCTTATG 59.018 50.000 0.00 0.00 0.00 1.90
2423 6143 2.711547 GGGGCCTCTTGATACCTTATGT 59.288 50.000 0.84 0.00 0.00 2.29
2424 6144 3.138468 GGGGCCTCTTGATACCTTATGTT 59.862 47.826 0.84 0.00 0.00 2.71
2425 6145 4.390264 GGGCCTCTTGATACCTTATGTTC 58.610 47.826 0.84 0.00 0.00 3.18
2426 6146 4.141482 GGGCCTCTTGATACCTTATGTTCA 60.141 45.833 0.84 0.00 0.00 3.18
2427 6147 4.816925 GGCCTCTTGATACCTTATGTTCAC 59.183 45.833 0.00 0.00 0.00 3.18
2428 6148 5.396884 GGCCTCTTGATACCTTATGTTCACT 60.397 44.000 0.00 0.00 0.00 3.41
2429 6149 6.116126 GCCTCTTGATACCTTATGTTCACTT 58.884 40.000 0.00 0.00 0.00 3.16
2430 6150 6.258947 GCCTCTTGATACCTTATGTTCACTTC 59.741 42.308 0.00 0.00 0.00 3.01
2431 6151 6.763610 CCTCTTGATACCTTATGTTCACTTCC 59.236 42.308 0.00 0.00 0.00 3.46
2432 6152 7.365117 CCTCTTGATACCTTATGTTCACTTCCT 60.365 40.741 0.00 0.00 0.00 3.36
2433 6153 8.603898 TCTTGATACCTTATGTTCACTTCCTA 57.396 34.615 0.00 0.00 0.00 2.94
2434 6154 9.042450 TCTTGATACCTTATGTTCACTTCCTAA 57.958 33.333 0.00 0.00 0.00 2.69
2435 6155 9.099454 CTTGATACCTTATGTTCACTTCCTAAC 57.901 37.037 0.00 0.00 0.00 2.34
2436 6156 8.375493 TGATACCTTATGTTCACTTCCTAACT 57.625 34.615 0.00 0.00 0.00 2.24
2437 6157 9.483489 TGATACCTTATGTTCACTTCCTAACTA 57.517 33.333 0.00 0.00 0.00 2.24
2438 6158 9.968870 GATACCTTATGTTCACTTCCTAACTAG 57.031 37.037 0.00 0.00 0.00 2.57
2439 6159 7.793948 ACCTTATGTTCACTTCCTAACTAGT 57.206 36.000 0.00 0.00 0.00 2.57
2440 6160 8.890410 ACCTTATGTTCACTTCCTAACTAGTA 57.110 34.615 0.00 0.00 0.00 1.82
2441 6161 8.968969 ACCTTATGTTCACTTCCTAACTAGTAG 58.031 37.037 0.00 0.00 0.00 2.57
2442 6162 8.968969 CCTTATGTTCACTTCCTAACTAGTAGT 58.031 37.037 0.00 0.00 0.00 2.73
2444 6164 6.492007 TGTTCACTTCCTAACTAGTAGTCG 57.508 41.667 2.58 0.00 0.00 4.18
2445 6165 5.106396 TGTTCACTTCCTAACTAGTAGTCGC 60.106 44.000 2.58 0.00 0.00 5.19
2446 6166 3.620374 TCACTTCCTAACTAGTAGTCGCG 59.380 47.826 2.58 0.00 0.00 5.87
2447 6167 2.941720 ACTTCCTAACTAGTAGTCGCGG 59.058 50.000 6.13 4.87 0.00 6.46
2448 6168 2.988010 TCCTAACTAGTAGTCGCGGA 57.012 50.000 6.13 7.12 0.00 5.54
2449 6169 3.266510 TCCTAACTAGTAGTCGCGGAA 57.733 47.619 6.13 0.00 0.00 4.30
2450 6170 3.201290 TCCTAACTAGTAGTCGCGGAAG 58.799 50.000 6.13 0.00 0.00 3.46
2462 6182 4.821935 CGGAAGCCTTTTCCCAGT 57.178 55.556 0.63 0.00 35.17 4.00
2463 6183 2.257353 CGGAAGCCTTTTCCCAGTG 58.743 57.895 0.63 0.00 35.17 3.66
2464 6184 0.537371 CGGAAGCCTTTTCCCAGTGT 60.537 55.000 0.63 0.00 35.17 3.55
2465 6185 1.248486 GGAAGCCTTTTCCCAGTGTC 58.752 55.000 0.00 0.00 32.48 3.67
2466 6186 0.875059 GAAGCCTTTTCCCAGTGTCG 59.125 55.000 0.00 0.00 0.00 4.35
2467 6187 0.182775 AAGCCTTTTCCCAGTGTCGT 59.817 50.000 0.00 0.00 0.00 4.34
2468 6188 1.053424 AGCCTTTTCCCAGTGTCGTA 58.947 50.000 0.00 0.00 0.00 3.43
2469 6189 1.628846 AGCCTTTTCCCAGTGTCGTAT 59.371 47.619 0.00 0.00 0.00 3.06
2470 6190 1.737793 GCCTTTTCCCAGTGTCGTATG 59.262 52.381 0.00 0.00 0.00 2.39
2471 6191 1.737793 CCTTTTCCCAGTGTCGTATGC 59.262 52.381 0.00 0.00 0.00 3.14
2472 6192 2.422597 CTTTTCCCAGTGTCGTATGCA 58.577 47.619 0.00 0.00 0.00 3.96
2473 6193 2.552599 TTTCCCAGTGTCGTATGCAA 57.447 45.000 0.00 0.00 0.00 4.08
2474 6194 2.552599 TTCCCAGTGTCGTATGCAAA 57.447 45.000 0.00 0.00 0.00 3.68
2475 6195 2.779755 TCCCAGTGTCGTATGCAAAT 57.220 45.000 0.00 0.00 0.00 2.32
2476 6196 2.627945 TCCCAGTGTCGTATGCAAATC 58.372 47.619 0.00 0.00 0.00 2.17
2477 6197 1.327460 CCCAGTGTCGTATGCAAATCG 59.673 52.381 0.00 0.00 0.00 3.34
2478 6198 1.327460 CCAGTGTCGTATGCAAATCGG 59.673 52.381 0.00 0.00 0.00 4.18
2479 6199 2.267426 CAGTGTCGTATGCAAATCGGA 58.733 47.619 0.00 0.00 0.00 4.55
2480 6200 2.866156 CAGTGTCGTATGCAAATCGGAT 59.134 45.455 0.00 0.00 0.00 4.18
2481 6201 3.309682 CAGTGTCGTATGCAAATCGGATT 59.690 43.478 0.00 0.00 0.00 3.01
2482 6202 4.506288 CAGTGTCGTATGCAAATCGGATTA 59.494 41.667 3.22 0.00 0.00 1.75
2483 6203 5.177511 CAGTGTCGTATGCAAATCGGATTAT 59.822 40.000 3.22 0.00 0.00 1.28
2484 6204 6.364976 CAGTGTCGTATGCAAATCGGATTATA 59.635 38.462 3.22 0.00 0.00 0.98
2485 6205 6.586463 AGTGTCGTATGCAAATCGGATTATAG 59.414 38.462 3.22 0.00 0.00 1.31
2486 6206 6.365247 GTGTCGTATGCAAATCGGATTATAGT 59.635 38.462 3.22 0.00 0.00 2.12
2487 6207 6.584942 TGTCGTATGCAAATCGGATTATAGTC 59.415 38.462 3.22 0.00 0.00 2.59
2488 6208 5.798434 TCGTATGCAAATCGGATTATAGTCG 59.202 40.000 3.22 5.89 0.00 4.18
2489 6209 4.928661 ATGCAAATCGGATTATAGTCGC 57.071 40.909 3.22 1.79 0.00 5.19
2490 6210 3.723260 TGCAAATCGGATTATAGTCGCA 58.277 40.909 3.22 4.17 0.00 5.10
2491 6211 4.314961 TGCAAATCGGATTATAGTCGCAT 58.685 39.130 3.22 0.00 0.00 4.73
2492 6212 4.754618 TGCAAATCGGATTATAGTCGCATT 59.245 37.500 3.22 0.00 0.00 3.56
2493 6213 5.107104 TGCAAATCGGATTATAGTCGCATTC 60.107 40.000 3.22 0.00 0.00 2.67
2494 6214 5.671329 GCAAATCGGATTATAGTCGCATTCC 60.671 44.000 3.22 0.00 0.00 3.01
2495 6215 4.801330 ATCGGATTATAGTCGCATTCCA 57.199 40.909 0.00 0.00 0.00 3.53
2496 6216 4.594123 TCGGATTATAGTCGCATTCCAA 57.406 40.909 0.00 0.00 0.00 3.53
2497 6217 4.556233 TCGGATTATAGTCGCATTCCAAG 58.444 43.478 0.00 0.00 0.00 3.61
2498 6218 4.038763 TCGGATTATAGTCGCATTCCAAGT 59.961 41.667 0.00 0.00 0.00 3.16
2499 6219 4.150627 CGGATTATAGTCGCATTCCAAGTG 59.849 45.833 0.00 0.00 0.00 3.16
2500 6220 5.057149 GGATTATAGTCGCATTCCAAGTGT 58.943 41.667 0.00 0.00 0.00 3.55
2501 6221 5.050091 GGATTATAGTCGCATTCCAAGTGTG 60.050 44.000 0.00 0.00 0.00 3.82
2502 6222 2.831685 TAGTCGCATTCCAAGTGTGT 57.168 45.000 0.00 0.00 0.00 3.72
2503 6223 1.967319 AGTCGCATTCCAAGTGTGTT 58.033 45.000 0.00 0.00 0.00 3.32
2504 6224 2.297701 AGTCGCATTCCAAGTGTGTTT 58.702 42.857 0.00 0.00 0.00 2.83
2505 6225 2.033299 AGTCGCATTCCAAGTGTGTTTG 59.967 45.455 0.00 0.00 0.00 2.93
2506 6226 2.032799 GTCGCATTCCAAGTGTGTTTGA 59.967 45.455 0.00 0.00 0.00 2.69
2507 6227 2.032799 TCGCATTCCAAGTGTGTTTGAC 59.967 45.455 0.00 0.00 0.00 3.18
2508 6228 2.033299 CGCATTCCAAGTGTGTTTGACT 59.967 45.455 0.00 0.00 0.00 3.41
2509 6229 3.249799 CGCATTCCAAGTGTGTTTGACTA 59.750 43.478 0.00 0.00 0.00 2.59
2510 6230 4.260990 CGCATTCCAAGTGTGTTTGACTAA 60.261 41.667 0.00 0.00 0.00 2.24
2511 6231 5.562696 CGCATTCCAAGTGTGTTTGACTAAT 60.563 40.000 0.00 0.00 0.00 1.73
2512 6232 6.215845 GCATTCCAAGTGTGTTTGACTAATT 58.784 36.000 0.00 0.00 0.00 1.40
2513 6233 6.363357 GCATTCCAAGTGTGTTTGACTAATTC 59.637 38.462 0.00 0.00 0.00 2.17
2514 6234 7.424803 CATTCCAAGTGTGTTTGACTAATTCA 58.575 34.615 0.00 0.00 0.00 2.57
2515 6235 7.581213 TTCCAAGTGTGTTTGACTAATTCAT 57.419 32.000 0.00 0.00 32.84 2.57
2516 6236 7.581213 TCCAAGTGTGTTTGACTAATTCATT 57.419 32.000 0.00 0.00 32.84 2.57
2517 6237 8.006298 TCCAAGTGTGTTTGACTAATTCATTT 57.994 30.769 0.00 0.00 32.84 2.32
2518 6238 8.474025 TCCAAGTGTGTTTGACTAATTCATTTT 58.526 29.630 0.00 0.00 32.84 1.82
2519 6239 9.097257 CCAAGTGTGTTTGACTAATTCATTTTT 57.903 29.630 0.00 0.00 32.84 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.390340 TGCAAGCAGACATCGGAGAC 60.390 55.000 0.00 0.00 42.51 3.36
109 111 1.130561 GTCCACTTCATTAAGCCACGC 59.869 52.381 0.00 0.00 36.05 5.34
122 124 5.825679 TGTTTAGCTATGTGTTTGTCCACTT 59.174 36.000 0.00 0.00 36.30 3.16
190 193 7.886970 TCCCATCAAAGATCATATCATTTCTCC 59.113 37.037 0.00 0.00 0.00 3.71
237 240 4.138290 GCAGTAGCTCTGTAGATGACCTA 58.862 47.826 12.71 0.00 45.23 3.08
300 303 2.175715 ACCCAATATCCAAAGGCTCCTC 59.824 50.000 0.00 0.00 0.00 3.71
353 356 1.939934 CGCCATCTAAATCGGCTGAAA 59.060 47.619 0.00 0.00 43.95 2.69
366 369 5.746990 AGCCTATTATTAACTCGCCATCT 57.253 39.130 0.00 0.00 0.00 2.90
492 499 4.892934 ACAAGGTCTTAAGTTCCAATGCAA 59.107 37.500 16.98 0.00 0.00 4.08
601 609 8.893563 TCTATTGGTCCTATGAAAATGGTTTT 57.106 30.769 0.00 0.00 35.12 2.43
602 610 9.136323 GATCTATTGGTCCTATGAAAATGGTTT 57.864 33.333 0.00 0.00 0.00 3.27
603 611 7.445402 CGATCTATTGGTCCTATGAAAATGGTT 59.555 37.037 0.00 0.00 0.00 3.67
604 612 6.936900 CGATCTATTGGTCCTATGAAAATGGT 59.063 38.462 0.00 0.00 0.00 3.55
605 613 6.128172 GCGATCTATTGGTCCTATGAAAATGG 60.128 42.308 0.00 0.00 0.00 3.16
606 614 6.427853 TGCGATCTATTGGTCCTATGAAAATG 59.572 38.462 0.00 0.00 0.00 2.32
607 615 6.533730 TGCGATCTATTGGTCCTATGAAAAT 58.466 36.000 0.00 0.00 0.00 1.82
608 616 5.924356 TGCGATCTATTGGTCCTATGAAAA 58.076 37.500 0.00 0.00 0.00 2.29
609 617 5.545063 TGCGATCTATTGGTCCTATGAAA 57.455 39.130 0.00 0.00 0.00 2.69
610 618 5.481824 AGATGCGATCTATTGGTCCTATGAA 59.518 40.000 0.00 0.00 38.00 2.57
611 619 5.019470 AGATGCGATCTATTGGTCCTATGA 58.981 41.667 0.00 0.00 38.00 2.15
612 620 5.336150 AGATGCGATCTATTGGTCCTATG 57.664 43.478 0.00 0.00 38.00 2.23
613 621 4.097135 CGAGATGCGATCTATTGGTCCTAT 59.903 45.833 0.00 0.00 44.57 2.57
614 622 3.440522 CGAGATGCGATCTATTGGTCCTA 59.559 47.826 0.00 0.00 44.57 2.94
615 623 2.230025 CGAGATGCGATCTATTGGTCCT 59.770 50.000 0.00 0.00 44.57 3.85
616 624 2.600731 CGAGATGCGATCTATTGGTCC 58.399 52.381 0.00 0.00 44.57 4.46
617 625 2.229062 TCCGAGATGCGATCTATTGGTC 59.771 50.000 0.00 0.00 44.57 4.02
618 626 2.029828 GTCCGAGATGCGATCTATTGGT 60.030 50.000 0.00 0.00 44.57 3.67
619 627 2.600731 GTCCGAGATGCGATCTATTGG 58.399 52.381 0.00 0.00 44.57 3.16
620 628 2.095718 TCGTCCGAGATGCGATCTATTG 60.096 50.000 0.00 0.00 44.57 1.90
621 629 2.152016 TCGTCCGAGATGCGATCTATT 58.848 47.619 0.00 0.00 44.57 1.73
622 630 1.809684 TCGTCCGAGATGCGATCTAT 58.190 50.000 0.00 0.00 44.57 1.98
623 631 1.809684 ATCGTCCGAGATGCGATCTA 58.190 50.000 0.00 0.00 40.76 1.98
624 632 0.955178 AATCGTCCGAGATGCGATCT 59.045 50.000 0.00 0.00 43.38 2.75
625 633 1.772182 AAATCGTCCGAGATGCGATC 58.228 50.000 0.00 0.00 43.38 3.69
626 634 2.225068 AAAATCGTCCGAGATGCGAT 57.775 45.000 0.00 0.00 45.66 4.58
627 635 1.658596 CAAAAATCGTCCGAGATGCGA 59.341 47.619 0.00 0.00 44.57 5.10
628 636 1.267532 CCAAAAATCGTCCGAGATGCG 60.268 52.381 0.00 0.00 40.47 4.73
629 637 1.737793 ACCAAAAATCGTCCGAGATGC 59.262 47.619 0.00 0.00 0.00 3.91
630 638 5.734855 ATTACCAAAAATCGTCCGAGATG 57.265 39.130 0.00 0.00 0.00 2.90
631 639 6.150474 ACAAATTACCAAAAATCGTCCGAGAT 59.850 34.615 0.00 0.00 0.00 2.75
632 640 5.470777 ACAAATTACCAAAAATCGTCCGAGA 59.529 36.000 0.00 0.00 0.00 4.04
633 641 5.695818 ACAAATTACCAAAAATCGTCCGAG 58.304 37.500 0.00 0.00 0.00 4.63
634 642 5.238868 TGACAAATTACCAAAAATCGTCCGA 59.761 36.000 0.00 0.00 0.00 4.55
635 643 5.341196 GTGACAAATTACCAAAAATCGTCCG 59.659 40.000 0.00 0.00 0.00 4.79
636 644 6.443792 AGTGACAAATTACCAAAAATCGTCC 58.556 36.000 0.00 0.00 0.00 4.79
637 645 7.136119 TGAGTGACAAATTACCAAAAATCGTC 58.864 34.615 0.00 0.00 0.00 4.20
638 646 7.033530 TGAGTGACAAATTACCAAAAATCGT 57.966 32.000 0.00 0.00 0.00 3.73
639 647 9.277565 CTATGAGTGACAAATTACCAAAAATCG 57.722 33.333 0.00 0.00 0.00 3.34
640 648 9.076596 GCTATGAGTGACAAATTACCAAAAATC 57.923 33.333 0.00 0.00 0.00 2.17
641 649 8.584157 TGCTATGAGTGACAAATTACCAAAAAT 58.416 29.630 0.00 0.00 0.00 1.82
642 650 7.946207 TGCTATGAGTGACAAATTACCAAAAA 58.054 30.769 0.00 0.00 0.00 1.94
643 651 7.517614 TGCTATGAGTGACAAATTACCAAAA 57.482 32.000 0.00 0.00 0.00 2.44
682 4276 8.262227 AGTAATACCCTACATGAAAATGTTCGA 58.738 33.333 0.00 0.00 36.46 3.71
698 4292 6.655003 CGATGGATGCAATAAAGTAATACCCT 59.345 38.462 0.00 0.00 0.00 4.34
815 4413 6.327934 GCATCCATTGATTAGTTGCATATCC 58.672 40.000 0.00 0.00 0.00 2.59
867 4465 8.383374 TGGGTTTACTAGTAGTTATTGATGGT 57.617 34.615 8.40 0.00 0.00 3.55
891 4489 9.927668 AATTAGTTGAATGTATGTCCCTTTTTG 57.072 29.630 0.00 0.00 0.00 2.44
949 4552 2.584391 GGACAGCTGAACGGAGGGT 61.584 63.158 23.35 0.00 0.00 4.34
993 4596 1.418334 AGAATGGGATGAGTCGAGGG 58.582 55.000 0.00 0.00 0.00 4.30
1011 4614 1.672881 CGGGGCTGCAAGATTAAGAAG 59.327 52.381 0.50 0.00 34.07 2.85
1320 4928 2.654912 CGGAGTTGTGGAACGCGTC 61.655 63.158 14.44 6.14 45.01 5.19
1379 4987 2.357396 TTGCGCACACTGCTCGAT 60.357 55.556 11.12 0.00 42.25 3.59
1391 4999 2.433318 AAGGAGACGAGCTTGCGC 60.433 61.111 0.00 0.00 33.86 6.09
1411 5019 1.137675 ACCTCGTTTAGATAACCGGGC 59.862 52.381 6.32 0.00 0.00 6.13
1435 5043 4.219143 TCCGCAGTTACATATACACGAG 57.781 45.455 0.00 0.00 0.00 4.18
1444 5052 3.196901 TGTTATGACCTCCGCAGTTACAT 59.803 43.478 0.00 0.00 0.00 2.29
1450 5058 2.672961 TCTTGTTATGACCTCCGCAG 57.327 50.000 0.00 0.00 0.00 5.18
1486 5094 5.060940 GCCAAACAATCAAAGAAACGATAGC 59.939 40.000 0.00 0.00 42.67 2.97
1489 5097 4.942852 TGCCAAACAATCAAAGAAACGAT 58.057 34.783 0.00 0.00 0.00 3.73
1524 5132 7.321745 AGGCTTGCATACAGTATTAACTTTC 57.678 36.000 0.00 0.00 31.97 2.62
1601 5211 2.841988 GGATCCTCCTCGGCTGCT 60.842 66.667 3.84 0.00 32.53 4.24
1602 5212 2.841988 AGGATCCTCCTCGGCTGC 60.842 66.667 9.02 0.00 45.66 5.25
1614 5224 1.509004 GATAGCGCCGAGGAGGATC 59.491 63.158 2.29 0.00 45.00 3.36
1646 5256 2.272146 CTAGCGTGCCCCATGGTT 59.728 61.111 11.73 0.00 33.07 3.67
1679 5295 0.600057 GAGCTTCTGGGTTTTGGCAG 59.400 55.000 0.00 0.00 0.00 4.85
1680 5296 1.172180 CGAGCTTCTGGGTTTTGGCA 61.172 55.000 0.00 0.00 0.00 4.92
1681 5297 1.581447 CGAGCTTCTGGGTTTTGGC 59.419 57.895 0.00 0.00 0.00 4.52
1682 5298 1.866853 GCCGAGCTTCTGGGTTTTGG 61.867 60.000 0.00 0.00 31.81 3.28
1683 5299 1.581447 GCCGAGCTTCTGGGTTTTG 59.419 57.895 0.00 0.00 31.81 2.44
1684 5300 1.603739 GGCCGAGCTTCTGGGTTTT 60.604 57.895 0.00 0.00 31.81 2.43
1685 5301 2.034221 GGCCGAGCTTCTGGGTTT 59.966 61.111 0.00 0.00 31.81 3.27
1686 5302 4.394712 CGGCCGAGCTTCTGGGTT 62.395 66.667 24.07 0.00 31.81 4.11
1712 5328 2.126850 TTCGACGCGCTCTGTCAG 60.127 61.111 5.73 2.93 36.11 3.51
1722 5338 2.890961 GCCCTTAGCCTTCGACGC 60.891 66.667 0.00 0.00 34.35 5.19
1734 5350 2.025605 TCTGAAATGAGAGCATGCCCTT 60.026 45.455 15.66 0.00 34.26 3.95
1738 5354 1.329906 CGGTCTGAAATGAGAGCATGC 59.670 52.381 10.51 10.51 39.94 4.06
1739 5355 1.938577 CCGGTCTGAAATGAGAGCATG 59.061 52.381 0.00 0.00 39.94 4.06
1740 5356 1.833630 TCCGGTCTGAAATGAGAGCAT 59.166 47.619 0.00 0.00 39.94 3.79
1741 5357 1.205655 CTCCGGTCTGAAATGAGAGCA 59.794 52.381 0.00 0.00 39.94 4.26
1742 5358 1.933247 CTCCGGTCTGAAATGAGAGC 58.067 55.000 0.00 0.00 37.16 4.09
1743 5359 1.480137 AGCTCCGGTCTGAAATGAGAG 59.520 52.381 0.00 0.00 0.00 3.20
1744 5360 1.478510 GAGCTCCGGTCTGAAATGAGA 59.521 52.381 0.87 0.00 0.00 3.27
1745 5361 1.472376 GGAGCTCCGGTCTGAAATGAG 60.472 57.143 19.06 0.00 0.00 2.90
1746 5362 0.537188 GGAGCTCCGGTCTGAAATGA 59.463 55.000 19.06 0.00 0.00 2.57
1747 5363 0.539051 AGGAGCTCCGGTCTGAAATG 59.461 55.000 26.95 0.00 42.08 2.32
1748 5364 0.827368 GAGGAGCTCCGGTCTGAAAT 59.173 55.000 26.95 6.05 42.08 2.17
1774 5412 2.202440 CGATATAGCCGGCCGTCG 60.202 66.667 26.15 22.68 38.88 5.12
1798 5436 7.436673 CGATCTCCGAAACATAAAGAAATCTCT 59.563 37.037 0.00 0.00 41.76 3.10
1814 5452 7.860918 ACTACTATAATATGCGATCTCCGAA 57.139 36.000 0.00 0.00 41.76 4.30
1836 5474 9.475620 TCTGAAATGGGATATACGTATCATACT 57.524 33.333 12.24 0.98 38.77 2.12
1859 5497 1.667212 TGCATAGCAGCGTTCAATCTG 59.333 47.619 0.00 0.00 37.31 2.90
1891 5529 1.663643 CATCGTACAAACATGGGACGG 59.336 52.381 5.53 0.00 34.38 4.79
1892 5530 1.062002 GCATCGTACAAACATGGGACG 59.938 52.381 0.00 0.00 34.90 4.79
1921 5559 1.056700 AGCCTATGGTCGCCTGGAAT 61.057 55.000 0.00 0.00 0.00 3.01
1922 5560 0.397957 TAGCCTATGGTCGCCTGGAA 60.398 55.000 0.00 0.00 0.00 3.53
1923 5561 0.397957 TTAGCCTATGGTCGCCTGGA 60.398 55.000 0.00 0.00 0.00 3.86
1927 5565 1.300697 CCGTTAGCCTATGGTCGCC 60.301 63.158 0.00 0.00 0.00 5.54
1928 5566 1.300697 CCCGTTAGCCTATGGTCGC 60.301 63.158 0.00 0.00 0.00 5.19
1929 5567 1.300697 GCCCGTTAGCCTATGGTCG 60.301 63.158 0.00 0.00 0.00 4.79
1930 5568 4.773209 GCCCGTTAGCCTATGGTC 57.227 61.111 0.00 0.00 0.00 4.02
1961 5599 0.106918 TATTGTGGGGCATTCGGTCC 60.107 55.000 0.00 0.00 42.12 4.46
1962 5600 1.757682 TTATTGTGGGGCATTCGGTC 58.242 50.000 0.00 0.00 0.00 4.79
1963 5601 1.822371 GTTTATTGTGGGGCATTCGGT 59.178 47.619 0.00 0.00 0.00 4.69
1964 5602 1.202245 CGTTTATTGTGGGGCATTCGG 60.202 52.381 0.00 0.00 0.00 4.30
1965 5603 1.202245 CCGTTTATTGTGGGGCATTCG 60.202 52.381 0.00 0.00 0.00 3.34
1966 5604 1.136110 CCCGTTTATTGTGGGGCATTC 59.864 52.381 0.00 0.00 39.39 2.67
1968 5606 2.894858 CCCGTTTATTGTGGGGCAT 58.105 52.632 0.00 0.00 39.39 4.40
1969 5607 4.425099 CCCGTTTATTGTGGGGCA 57.575 55.556 0.00 0.00 39.39 5.36
1971 5609 1.000145 AGGCCCGTTTATTGTGGGG 60.000 57.895 0.00 0.00 43.52 4.96
1972 5610 0.322997 TCAGGCCCGTTTATTGTGGG 60.323 55.000 0.00 0.00 46.22 4.61
1973 5611 0.808755 GTCAGGCCCGTTTATTGTGG 59.191 55.000 0.00 0.00 0.00 4.17
1974 5612 1.199097 GTGTCAGGCCCGTTTATTGTG 59.801 52.381 0.00 0.00 0.00 3.33
1975 5613 1.530323 GTGTCAGGCCCGTTTATTGT 58.470 50.000 0.00 0.00 0.00 2.71
1976 5614 0.446222 CGTGTCAGGCCCGTTTATTG 59.554 55.000 0.00 0.00 0.00 1.90
1977 5615 0.675522 CCGTGTCAGGCCCGTTTATT 60.676 55.000 0.00 0.00 0.00 1.40
1979 5617 2.344500 CCGTGTCAGGCCCGTTTA 59.656 61.111 0.00 0.00 0.00 2.01
1994 5680 1.586028 CCTCCCATGTTTTGTGCCG 59.414 57.895 0.00 0.00 0.00 5.69
2001 5687 0.406361 TAAACGGGCCTCCCATGTTT 59.594 50.000 0.84 6.09 45.83 2.83
2009 5695 2.474410 CCCTCATATAAACGGGCCTC 57.526 55.000 0.84 0.00 0.00 4.70
2015 5701 2.736721 CGACATGGCCCTCATATAAACG 59.263 50.000 0.00 0.00 34.12 3.60
2019 5705 2.299013 GACACGACATGGCCCTCATATA 59.701 50.000 0.00 0.00 34.12 0.86
2062 5748 2.993220 CTCTTATGCGTGTGCTTGTGTA 59.007 45.455 0.00 0.00 43.34 2.90
2064 5750 2.068519 TCTCTTATGCGTGTGCTTGTG 58.931 47.619 0.00 0.00 43.34 3.33
2073 5759 6.019801 CGTTAATTAGTTGCTCTCTTATGCGT 60.020 38.462 0.00 0.00 0.00 5.24
2116 5831 0.672711 GGCCGACCGCTTAACTTTCT 60.673 55.000 0.00 0.00 37.74 2.52
2140 5856 2.282180 GGGCCGGTTGTCACACAT 60.282 61.111 1.90 0.00 0.00 3.21
2156 5872 4.567959 CCAAAAAGACTGAAAAGCACAAGG 59.432 41.667 0.00 0.00 0.00 3.61
2158 5874 3.932089 GCCAAAAAGACTGAAAAGCACAA 59.068 39.130 0.00 0.00 0.00 3.33
2172 5888 0.534877 GCCCCCAAACAGCCAAAAAG 60.535 55.000 0.00 0.00 0.00 2.27
2247 5967 0.872451 CGTGCCGATACGCCATGTTA 60.872 55.000 0.00 0.00 37.24 2.41
2307 6027 2.668550 GGGTCGTTCCTGGCACAC 60.669 66.667 0.00 0.00 36.25 3.82
2308 6028 4.308458 CGGGTCGTTCCTGGCACA 62.308 66.667 0.00 0.00 38.86 4.57
2309 6029 4.309950 ACGGGTCGTTCCTGGCAC 62.310 66.667 11.50 0.00 46.44 5.01
2318 6038 3.507233 TGATACAAGACTAAACGGGTCGT 59.493 43.478 0.00 0.00 43.97 4.34
2319 6039 4.100707 TGATACAAGACTAAACGGGTCG 57.899 45.455 0.00 0.00 38.58 4.79
2320 6040 5.684626 CGTATGATACAAGACTAAACGGGTC 59.315 44.000 3.24 0.00 0.00 4.46
2321 6041 5.585390 CGTATGATACAAGACTAAACGGGT 58.415 41.667 3.24 0.00 0.00 5.28
2322 6042 4.443394 GCGTATGATACAAGACTAAACGGG 59.557 45.833 3.24 0.00 0.00 5.28
2323 6043 5.038683 TGCGTATGATACAAGACTAAACGG 58.961 41.667 3.24 0.00 0.00 4.44
2324 6044 6.563398 TTGCGTATGATACAAGACTAAACG 57.437 37.500 3.24 0.00 0.00 3.60
2325 6045 9.210426 CAATTTGCGTATGATACAAGACTAAAC 57.790 33.333 3.24 0.00 0.00 2.01
2326 6046 8.394877 CCAATTTGCGTATGATACAAGACTAAA 58.605 33.333 3.24 0.00 0.00 1.85
2327 6047 7.766738 TCCAATTTGCGTATGATACAAGACTAA 59.233 33.333 3.24 0.00 0.00 2.24
2328 6048 7.269316 TCCAATTTGCGTATGATACAAGACTA 58.731 34.615 3.24 0.00 0.00 2.59
2329 6049 6.112734 TCCAATTTGCGTATGATACAAGACT 58.887 36.000 3.24 0.00 0.00 3.24
2330 6050 6.358118 TCCAATTTGCGTATGATACAAGAC 57.642 37.500 3.24 0.00 0.00 3.01
2331 6051 7.566760 AATCCAATTTGCGTATGATACAAGA 57.433 32.000 3.24 0.00 0.00 3.02
2334 6054 9.719355 ACTATAATCCAATTTGCGTATGATACA 57.281 29.630 3.24 0.00 0.00 2.29
2336 6056 9.083080 CGACTATAATCCAATTTGCGTATGATA 57.917 33.333 0.00 0.00 0.00 2.15
2337 6057 7.413000 GCGACTATAATCCAATTTGCGTATGAT 60.413 37.037 0.00 0.00 0.00 2.45
2338 6058 6.128661 GCGACTATAATCCAATTTGCGTATGA 60.129 38.462 0.00 0.00 0.00 2.15
2339 6059 6.015504 GCGACTATAATCCAATTTGCGTATG 58.984 40.000 0.00 0.00 0.00 2.39
2340 6060 5.163992 CGCGACTATAATCCAATTTGCGTAT 60.164 40.000 0.00 0.00 37.34 3.06
2341 6061 4.149221 CGCGACTATAATCCAATTTGCGTA 59.851 41.667 0.00 0.00 37.34 4.42
2342 6062 3.059868 CGCGACTATAATCCAATTTGCGT 60.060 43.478 0.00 0.00 37.34 5.24
2343 6063 3.059868 ACGCGACTATAATCCAATTTGCG 60.060 43.478 15.93 0.00 46.40 4.85
2344 6064 4.468095 ACGCGACTATAATCCAATTTGC 57.532 40.909 15.93 0.00 0.00 3.68
2345 6065 5.007234 TGGAACGCGACTATAATCCAATTTG 59.993 40.000 15.93 0.00 34.21 2.32
2346 6066 5.120399 TGGAACGCGACTATAATCCAATTT 58.880 37.500 15.93 0.00 34.21 1.82
2347 6067 4.699637 TGGAACGCGACTATAATCCAATT 58.300 39.130 15.93 0.00 34.21 2.32
2348 6068 4.330944 TGGAACGCGACTATAATCCAAT 57.669 40.909 15.93 0.00 34.21 3.16
2349 6069 3.804786 TGGAACGCGACTATAATCCAA 57.195 42.857 15.93 0.00 34.21 3.53
2350 6070 3.131577 ACTTGGAACGCGACTATAATCCA 59.868 43.478 15.93 11.45 35.27 3.41
2351 6071 3.489785 CACTTGGAACGCGACTATAATCC 59.510 47.826 15.93 8.92 0.00 3.01
2352 6072 4.026804 CACACTTGGAACGCGACTATAATC 60.027 45.833 15.93 0.00 0.00 1.75
2353 6073 3.863424 CACACTTGGAACGCGACTATAAT 59.137 43.478 15.93 0.00 0.00 1.28
2354 6074 3.247442 CACACTTGGAACGCGACTATAA 58.753 45.455 15.93 0.00 0.00 0.98
2355 6075 2.229543 ACACACTTGGAACGCGACTATA 59.770 45.455 15.93 0.00 0.00 1.31
2356 6076 1.000506 ACACACTTGGAACGCGACTAT 59.999 47.619 15.93 0.00 0.00 2.12
2357 6077 0.386476 ACACACTTGGAACGCGACTA 59.614 50.000 15.93 0.78 0.00 2.59
2358 6078 0.461339 AACACACTTGGAACGCGACT 60.461 50.000 15.93 0.00 0.00 4.18
2359 6079 0.375803 AAACACACTTGGAACGCGAC 59.624 50.000 15.93 6.28 0.00 5.19
2360 6080 0.375454 CAAACACACTTGGAACGCGA 59.625 50.000 15.93 0.00 0.00 5.87
2361 6081 0.375454 TCAAACACACTTGGAACGCG 59.625 50.000 3.53 3.53 0.00 6.01
2362 6082 1.400494 AGTCAAACACACTTGGAACGC 59.600 47.619 0.00 0.00 0.00 4.84
2363 6083 2.791158 GCAGTCAAACACACTTGGAACG 60.791 50.000 0.00 0.00 0.00 3.95
2364 6084 2.163412 TGCAGTCAAACACACTTGGAAC 59.837 45.455 0.00 0.00 0.00 3.62
2365 6085 2.441410 TGCAGTCAAACACACTTGGAA 58.559 42.857 0.00 0.00 0.00 3.53
2366 6086 2.121291 TGCAGTCAAACACACTTGGA 57.879 45.000 0.00 0.00 0.00 3.53
2367 6087 3.117794 CAATGCAGTCAAACACACTTGG 58.882 45.455 0.00 0.00 0.00 3.61
2368 6088 2.536803 GCAATGCAGTCAAACACACTTG 59.463 45.455 0.00 0.00 0.00 3.16
2369 6089 2.166050 TGCAATGCAGTCAAACACACTT 59.834 40.909 2.72 0.00 33.32 3.16
2370 6090 1.750206 TGCAATGCAGTCAAACACACT 59.250 42.857 2.72 0.00 33.32 3.55
2371 6091 1.854126 GTGCAATGCAGTCAAACACAC 59.146 47.619 8.73 0.00 40.08 3.82
2372 6092 1.202394 GGTGCAATGCAGTCAAACACA 60.202 47.619 8.73 0.00 40.08 3.72
2373 6093 1.067516 AGGTGCAATGCAGTCAAACAC 59.932 47.619 8.73 0.00 40.08 3.32
2374 6094 1.067364 CAGGTGCAATGCAGTCAAACA 59.933 47.619 8.73 0.00 40.08 2.83
2375 6095 1.337703 TCAGGTGCAATGCAGTCAAAC 59.662 47.619 8.73 0.00 40.08 2.93
2376 6096 1.337703 GTCAGGTGCAATGCAGTCAAA 59.662 47.619 8.73 0.00 40.08 2.69
2377 6097 0.953727 GTCAGGTGCAATGCAGTCAA 59.046 50.000 8.73 0.00 40.08 3.18
2378 6098 0.109153 AGTCAGGTGCAATGCAGTCA 59.891 50.000 8.73 0.00 40.08 3.41
2379 6099 0.520404 CAGTCAGGTGCAATGCAGTC 59.480 55.000 8.73 4.09 40.08 3.51
2380 6100 0.179009 ACAGTCAGGTGCAATGCAGT 60.179 50.000 8.73 0.00 40.08 4.40
2381 6101 0.240145 CACAGTCAGGTGCAATGCAG 59.760 55.000 8.73 0.00 40.08 4.41
2382 6102 0.179023 TCACAGTCAGGTGCAATGCA 60.179 50.000 2.72 2.72 38.66 3.96
2383 6103 0.520404 CTCACAGTCAGGTGCAATGC 59.480 55.000 0.00 0.00 38.66 3.56
2384 6104 1.162698 CCTCACAGTCAGGTGCAATG 58.837 55.000 0.00 0.00 38.66 2.82
2385 6105 0.037303 CCCTCACAGTCAGGTGCAAT 59.963 55.000 0.00 0.00 38.66 3.56
2386 6106 1.451504 CCCTCACAGTCAGGTGCAA 59.548 57.895 0.00 0.00 38.66 4.08
2387 6107 2.519622 CCCCTCACAGTCAGGTGCA 61.520 63.158 0.00 0.00 38.66 4.57
2388 6108 2.348998 CCCCTCACAGTCAGGTGC 59.651 66.667 0.00 0.00 38.66 5.01
2389 6109 2.348998 GCCCCTCACAGTCAGGTG 59.651 66.667 0.00 0.00 40.16 4.00
2390 6110 2.930562 GGCCCCTCACAGTCAGGT 60.931 66.667 0.00 0.00 0.00 4.00
2391 6111 2.608988 AGGCCCCTCACAGTCAGG 60.609 66.667 0.00 0.00 0.00 3.86
2392 6112 1.197430 AAGAGGCCCCTCACAGTCAG 61.197 60.000 16.19 0.00 44.99 3.51
2393 6113 1.152030 AAGAGGCCCCTCACAGTCA 60.152 57.895 16.19 0.00 44.99 3.41
2394 6114 1.194781 TCAAGAGGCCCCTCACAGTC 61.195 60.000 16.19 0.00 44.99 3.51
2395 6115 0.548682 ATCAAGAGGCCCCTCACAGT 60.549 55.000 16.19 0.00 44.99 3.55
2396 6116 1.139853 GTATCAAGAGGCCCCTCACAG 59.860 57.143 16.19 5.86 44.99 3.66
2397 6117 1.204146 GTATCAAGAGGCCCCTCACA 58.796 55.000 16.19 0.34 44.99 3.58
2398 6118 0.470341 GGTATCAAGAGGCCCCTCAC 59.530 60.000 16.19 5.33 44.99 3.51
2399 6119 0.343372 AGGTATCAAGAGGCCCCTCA 59.657 55.000 16.19 0.00 44.99 3.86
2400 6120 1.512735 AAGGTATCAAGAGGCCCCTC 58.487 55.000 0.00 6.20 43.03 4.30
2401 6121 2.889522 TAAGGTATCAAGAGGCCCCT 57.110 50.000 0.00 0.00 0.00 4.79
2402 6122 2.711547 ACATAAGGTATCAAGAGGCCCC 59.288 50.000 0.00 0.00 0.00 5.80
2403 6123 4.141482 TGAACATAAGGTATCAAGAGGCCC 60.141 45.833 0.00 0.00 0.00 5.80
2404 6124 4.816925 GTGAACATAAGGTATCAAGAGGCC 59.183 45.833 0.00 0.00 0.00 5.19
2405 6125 5.675538 AGTGAACATAAGGTATCAAGAGGC 58.324 41.667 0.00 0.00 0.00 4.70
2406 6126 6.763610 GGAAGTGAACATAAGGTATCAAGAGG 59.236 42.308 0.00 0.00 0.00 3.69
2407 6127 7.560368 AGGAAGTGAACATAAGGTATCAAGAG 58.440 38.462 0.00 0.00 0.00 2.85
2408 6128 7.496346 AGGAAGTGAACATAAGGTATCAAGA 57.504 36.000 0.00 0.00 0.00 3.02
2409 6129 9.099454 GTTAGGAAGTGAACATAAGGTATCAAG 57.901 37.037 0.00 0.00 0.00 3.02
2410 6130 8.822805 AGTTAGGAAGTGAACATAAGGTATCAA 58.177 33.333 0.00 0.00 0.00 2.57
2411 6131 8.375493 AGTTAGGAAGTGAACATAAGGTATCA 57.625 34.615 0.00 0.00 0.00 2.15
2412 6132 9.968870 CTAGTTAGGAAGTGAACATAAGGTATC 57.031 37.037 0.00 0.00 0.00 2.24
2413 6133 9.490083 ACTAGTTAGGAAGTGAACATAAGGTAT 57.510 33.333 0.00 0.00 0.00 2.73
2414 6134 8.890410 ACTAGTTAGGAAGTGAACATAAGGTA 57.110 34.615 0.00 0.00 0.00 3.08
2415 6135 7.793948 ACTAGTTAGGAAGTGAACATAAGGT 57.206 36.000 0.00 0.00 0.00 3.50
2416 6136 8.968969 ACTACTAGTTAGGAAGTGAACATAAGG 58.031 37.037 0.00 0.00 31.13 2.69
2418 6138 8.671921 CGACTACTAGTTAGGAAGTGAACATAA 58.328 37.037 0.00 0.00 31.13 1.90
2419 6139 7.201679 GCGACTACTAGTTAGGAAGTGAACATA 60.202 40.741 0.00 0.00 31.13 2.29
2420 6140 6.404513 GCGACTACTAGTTAGGAAGTGAACAT 60.405 42.308 0.00 0.00 31.13 2.71
2421 6141 5.106396 GCGACTACTAGTTAGGAAGTGAACA 60.106 44.000 0.00 0.00 31.13 3.18
2422 6142 5.331098 GCGACTACTAGTTAGGAAGTGAAC 58.669 45.833 0.00 0.00 31.13 3.18
2423 6143 4.093998 CGCGACTACTAGTTAGGAAGTGAA 59.906 45.833 0.00 0.00 31.13 3.18
2424 6144 3.620374 CGCGACTACTAGTTAGGAAGTGA 59.380 47.826 0.00 0.00 31.13 3.41
2425 6145 3.242673 CCGCGACTACTAGTTAGGAAGTG 60.243 52.174 8.23 0.00 31.13 3.16
2426 6146 2.941720 CCGCGACTACTAGTTAGGAAGT 59.058 50.000 8.23 0.00 31.13 3.01
2427 6147 3.201290 TCCGCGACTACTAGTTAGGAAG 58.799 50.000 8.23 0.00 31.13 3.46
2428 6148 3.266510 TCCGCGACTACTAGTTAGGAA 57.733 47.619 8.23 0.00 31.13 3.36
2429 6149 2.988010 TCCGCGACTACTAGTTAGGA 57.012 50.000 8.23 0.00 31.13 2.94
2430 6150 2.286891 GCTTCCGCGACTACTAGTTAGG 60.287 54.545 8.23 0.00 31.13 2.69
2431 6151 2.286891 GGCTTCCGCGACTACTAGTTAG 60.287 54.545 8.23 0.00 36.88 2.34
2432 6152 1.672881 GGCTTCCGCGACTACTAGTTA 59.327 52.381 8.23 0.00 36.88 2.24
2433 6153 0.455005 GGCTTCCGCGACTACTAGTT 59.545 55.000 8.23 0.00 36.88 2.24
2434 6154 0.394080 AGGCTTCCGCGACTACTAGT 60.394 55.000 8.23 0.00 36.88 2.57
2435 6155 0.739561 AAGGCTTCCGCGACTACTAG 59.260 55.000 8.23 0.00 36.88 2.57
2436 6156 1.180029 AAAGGCTTCCGCGACTACTA 58.820 50.000 8.23 0.00 36.88 1.82
2437 6157 0.320697 AAAAGGCTTCCGCGACTACT 59.679 50.000 8.23 0.00 36.88 2.57
2438 6158 0.720027 GAAAAGGCTTCCGCGACTAC 59.280 55.000 8.23 0.00 36.88 2.73
2439 6159 0.390735 GGAAAAGGCTTCCGCGACTA 60.391 55.000 8.23 0.00 36.88 2.59
2440 6160 1.671379 GGAAAAGGCTTCCGCGACT 60.671 57.895 8.23 0.00 36.88 4.18
2441 6161 2.687805 GGGAAAAGGCTTCCGCGAC 61.688 63.158 8.23 0.00 39.46 5.19
2442 6162 2.359478 GGGAAAAGGCTTCCGCGA 60.359 61.111 8.23 0.00 39.46 5.87
2443 6163 2.671619 TGGGAAAAGGCTTCCGCG 60.672 61.111 0.00 0.00 39.46 6.46
2444 6164 1.603739 ACTGGGAAAAGGCTTCCGC 60.604 57.895 0.00 5.00 39.46 5.54
2445 6165 0.537371 ACACTGGGAAAAGGCTTCCG 60.537 55.000 0.00 0.00 39.46 4.30
2446 6166 1.248486 GACACTGGGAAAAGGCTTCC 58.752 55.000 0.00 0.00 37.86 3.46
2447 6167 0.875059 CGACACTGGGAAAAGGCTTC 59.125 55.000 0.00 0.00 0.00 3.86
2448 6168 0.182775 ACGACACTGGGAAAAGGCTT 59.817 50.000 0.00 0.00 0.00 4.35
2449 6169 1.053424 TACGACACTGGGAAAAGGCT 58.947 50.000 0.00 0.00 0.00 4.58
2450 6170 1.737793 CATACGACACTGGGAAAAGGC 59.262 52.381 0.00 0.00 0.00 4.35
2451 6171 1.737793 GCATACGACACTGGGAAAAGG 59.262 52.381 0.00 0.00 0.00 3.11
2452 6172 2.422597 TGCATACGACACTGGGAAAAG 58.577 47.619 0.00 0.00 0.00 2.27
2453 6173 2.552599 TGCATACGACACTGGGAAAA 57.447 45.000 0.00 0.00 0.00 2.29
2454 6174 2.552599 TTGCATACGACACTGGGAAA 57.447 45.000 0.00 0.00 0.00 3.13
2455 6175 2.552599 TTTGCATACGACACTGGGAA 57.447 45.000 0.00 0.00 0.00 3.97
2456 6176 2.627945 GATTTGCATACGACACTGGGA 58.372 47.619 0.00 0.00 0.00 4.37
2457 6177 1.327460 CGATTTGCATACGACACTGGG 59.673 52.381 0.00 0.00 0.00 4.45
2458 6178 1.327460 CCGATTTGCATACGACACTGG 59.673 52.381 8.78 0.00 0.00 4.00
2459 6179 2.267426 TCCGATTTGCATACGACACTG 58.733 47.619 8.78 0.00 0.00 3.66
2460 6180 2.665649 TCCGATTTGCATACGACACT 57.334 45.000 8.78 0.00 0.00 3.55
2461 6181 3.944422 AATCCGATTTGCATACGACAC 57.056 42.857 8.78 0.00 0.00 3.67
2462 6182 6.452242 ACTATAATCCGATTTGCATACGACA 58.548 36.000 0.00 0.00 0.00 4.35
2463 6183 6.237227 CGACTATAATCCGATTTGCATACGAC 60.237 42.308 0.00 0.00 0.00 4.34
2464 6184 5.798434 CGACTATAATCCGATTTGCATACGA 59.202 40.000 0.00 0.00 0.00 3.43
2465 6185 5.498700 GCGACTATAATCCGATTTGCATACG 60.499 44.000 0.00 0.00 0.00 3.06
2466 6186 5.347635 TGCGACTATAATCCGATTTGCATAC 59.652 40.000 0.00 0.00 0.00 2.39
2467 6187 5.474825 TGCGACTATAATCCGATTTGCATA 58.525 37.500 0.00 0.00 0.00 3.14
2468 6188 4.314961 TGCGACTATAATCCGATTTGCAT 58.685 39.130 0.00 0.00 0.00 3.96
2469 6189 3.723260 TGCGACTATAATCCGATTTGCA 58.277 40.909 0.00 0.00 0.00 4.08
2470 6190 4.928661 ATGCGACTATAATCCGATTTGC 57.071 40.909 0.00 0.00 0.00 3.68
2471 6191 5.408299 TGGAATGCGACTATAATCCGATTTG 59.592 40.000 0.00 0.00 0.00 2.32
2472 6192 5.547465 TGGAATGCGACTATAATCCGATTT 58.453 37.500 0.00 0.00 0.00 2.17
2473 6193 5.147330 TGGAATGCGACTATAATCCGATT 57.853 39.130 0.00 0.00 0.00 3.34
2474 6194 4.801330 TGGAATGCGACTATAATCCGAT 57.199 40.909 0.00 0.00 0.00 4.18
2475 6195 4.038763 ACTTGGAATGCGACTATAATCCGA 59.961 41.667 0.00 0.00 0.00 4.55
2476 6196 4.150627 CACTTGGAATGCGACTATAATCCG 59.849 45.833 0.00 0.00 0.00 4.18
2477 6197 5.050091 CACACTTGGAATGCGACTATAATCC 60.050 44.000 0.00 0.00 0.00 3.01
2478 6198 5.523916 ACACACTTGGAATGCGACTATAATC 59.476 40.000 0.00 0.00 0.00 1.75
2479 6199 5.428253 ACACACTTGGAATGCGACTATAAT 58.572 37.500 0.00 0.00 0.00 1.28
2480 6200 4.827692 ACACACTTGGAATGCGACTATAA 58.172 39.130 0.00 0.00 0.00 0.98
2481 6201 4.465632 ACACACTTGGAATGCGACTATA 57.534 40.909 0.00 0.00 0.00 1.31
2482 6202 3.334583 ACACACTTGGAATGCGACTAT 57.665 42.857 0.00 0.00 0.00 2.12
2483 6203 2.831685 ACACACTTGGAATGCGACTA 57.168 45.000 0.00 0.00 0.00 2.59
2484 6204 1.967319 AACACACTTGGAATGCGACT 58.033 45.000 0.00 0.00 0.00 4.18
2485 6205 2.032799 TCAAACACACTTGGAATGCGAC 59.967 45.455 0.00 0.00 0.00 5.19
2486 6206 2.032799 GTCAAACACACTTGGAATGCGA 59.967 45.455 0.00 0.00 0.00 5.10
2487 6207 2.033299 AGTCAAACACACTTGGAATGCG 59.967 45.455 0.00 0.00 0.00 4.73
2488 6208 3.715628 AGTCAAACACACTTGGAATGC 57.284 42.857 0.00 0.00 0.00 3.56
2489 6209 7.424803 TGAATTAGTCAAACACACTTGGAATG 58.575 34.615 0.00 0.00 31.51 2.67
2490 6210 7.581213 TGAATTAGTCAAACACACTTGGAAT 57.419 32.000 0.00 0.00 31.51 3.01
2491 6211 7.581213 ATGAATTAGTCAAACACACTTGGAA 57.419 32.000 0.00 0.00 40.50 3.53
2492 6212 7.581213 AATGAATTAGTCAAACACACTTGGA 57.419 32.000 0.00 0.00 40.50 3.53
2493 6213 8.647143 AAAATGAATTAGTCAAACACACTTGG 57.353 30.769 0.00 0.00 40.50 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.