Multiple sequence alignment - TraesCS4B01G251900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G251900 chr4B 100.000 7574 0 0 1 7574 517966473 517958900 0.000000e+00 13987.0
1 TraesCS4B01G251900 chr4B 94.641 1586 84 1 4252 5837 409481689 409483273 0.000000e+00 2457.0
2 TraesCS4B01G251900 chr4B 92.308 1586 103 5 4252 5837 324975568 324974002 0.000000e+00 2235.0
3 TraesCS4B01G251900 chr4B 91.371 1240 90 16 3021 4253 186151018 186152247 0.000000e+00 1681.0
4 TraesCS4B01G251900 chr4B 96.429 700 24 1 1 700 404765287 404764589 0.000000e+00 1153.0
5 TraesCS4B01G251900 chr4B 94.985 678 32 2 26 703 66188940 66188265 0.000000e+00 1062.0
6 TraesCS4B01G251900 chr4B 92.553 282 14 5 2943 3221 576189634 576189911 1.530000e-106 398.0
7 TraesCS4B01G251900 chr4B 91.844 282 10 8 2946 3221 181517992 181518266 1.540000e-101 381.0
8 TraesCS4B01G251900 chr4B 91.135 282 12 8 2946 3221 181520910 181521184 3.340000e-98 370.0
9 TraesCS4B01G251900 chr4B 90.299 268 13 4 2943 3204 636972075 636971815 9.410000e-89 339.0
10 TraesCS4B01G251900 chr4B 88.780 205 11 6 2946 3144 636984773 636984575 2.730000e-59 241.0
11 TraesCS4B01G251900 chr4B 86.364 176 22 2 2963 3136 146483854 146484029 2.790000e-44 191.0
12 TraesCS4B01G251900 chr4B 79.535 215 20 6 7329 7520 454040508 454040295 1.710000e-26 132.0
13 TraesCS4B01G251900 chr4B 92.308 91 7 0 7394 7484 517958990 517959080 6.170000e-26 130.0
14 TraesCS4B01G251900 chr4B 91.176 68 5 1 7457 7524 467273811 467273745 2.910000e-14 91.6
15 TraesCS4B01G251900 chr5B 95.729 1592 68 0 4246 5837 94094319 94095910 0.000000e+00 2564.0
16 TraesCS4B01G251900 chr5B 95.352 1592 70 2 4252 5839 699610936 699609345 0.000000e+00 2527.0
17 TraesCS4B01G251900 chr5B 96.799 1312 38 4 2944 4253 440555368 440554059 0.000000e+00 2187.0
18 TraesCS4B01G251900 chr5B 86.002 1243 142 19 2962 4176 52796637 52795399 0.000000e+00 1303.0
19 TraesCS4B01G251900 chr5B 92.790 319 18 5 2943 3259 440552694 440552379 2.490000e-124 457.0
20 TraesCS4B01G251900 chr5B 93.077 130 9 0 2682 2811 50520072 50519943 2.790000e-44 191.0
21 TraesCS4B01G251900 chr5B 93.548 62 4 0 7337 7398 136048536 136048475 8.090000e-15 93.5
22 TraesCS4B01G251900 chr7B 95.301 1596 72 1 4246 5838 240657431 240659026 0.000000e+00 2529.0
23 TraesCS4B01G251900 chr7B 93.447 1587 103 1 4252 5837 188937251 188935665 0.000000e+00 2353.0
24 TraesCS4B01G251900 chr7B 97.864 1077 21 2 3179 4253 697047934 697046858 0.000000e+00 1860.0
25 TraesCS4B01G251900 chr7B 90.848 1344 80 34 2939 4253 31791831 31793160 0.000000e+00 1760.0
26 TraesCS4B01G251900 chr7B 98.929 280 2 1 2943 3222 697045784 697045506 4.080000e-137 499.0
27 TraesCS4B01G251900 chr7B 87.402 127 6 5 2518 2644 700413795 700413911 3.690000e-28 137.0
28 TraesCS4B01G251900 chr7B 92.391 92 6 1 7395 7485 226374916 226375007 6.170000e-26 130.0
29 TraesCS4B01G251900 chr7B 91.525 59 2 3 2646 2703 162140801 162140857 2.270000e-10 78.7
30 TraesCS4B01G251900 chr4A 90.904 1880 94 25 797 2635 43362626 43364469 0.000000e+00 2453.0
31 TraesCS4B01G251900 chr4A 93.619 909 44 7 5837 6739 43364606 43365506 0.000000e+00 1345.0
32 TraesCS4B01G251900 chr4A 83.320 1229 160 26 2946 4135 743145579 743144357 0.000000e+00 1092.0
33 TraesCS4B01G251900 chr4A 87.500 480 31 13 6925 7383 43365813 43366284 1.870000e-145 527.0
34 TraesCS4B01G251900 chr4A 93.662 284 16 2 2963 3245 86289756 86290038 2.530000e-114 424.0
35 TraesCS4B01G251900 chr4A 91.475 305 22 4 2943 3245 743143104 743142802 4.230000e-112 416.0
36 TraesCS4B01G251900 chr4A 95.808 167 7 0 6738 6904 43365538 43365704 3.480000e-68 270.0
37 TraesCS4B01G251900 chr4A 94.891 137 7 0 2810 2946 43364476 43364612 1.660000e-51 215.0
38 TraesCS4B01G251900 chr4A 95.294 85 4 0 7440 7524 503630508 503630592 1.330000e-27 135.0
39 TraesCS4B01G251900 chr4A 93.443 61 1 2 2646 2703 93926848 93926788 3.760000e-13 87.9
40 TraesCS4B01G251900 chr3B 93.518 1589 91 7 4252 5839 104382132 104380555 0.000000e+00 2353.0
41 TraesCS4B01G251900 chr3B 92.259 1266 58 21 3019 4251 322297614 322298872 0.000000e+00 1759.0
42 TraesCS4B01G251900 chr3B 92.137 1259 67 22 3019 4253 51775815 51774565 0.000000e+00 1748.0
43 TraesCS4B01G251900 chr3B 90.106 758 46 12 2978 3710 418063198 418063951 0.000000e+00 957.0
44 TraesCS4B01G251900 chr3B 94.074 135 8 0 2680 2814 556538923 556538789 9.960000e-49 206.0
45 TraesCS4B01G251900 chr3B 91.304 138 10 2 2678 2815 18241467 18241602 3.610000e-43 187.0
46 TraesCS4B01G251900 chr3B 93.750 80 5 0 7335 7414 750357533 750357454 3.710000e-23 121.0
47 TraesCS4B01G251900 chr3B 95.714 70 3 0 7329 7398 423806097 423806166 6.210000e-21 113.0
48 TraesCS4B01G251900 chr3B 93.220 59 4 0 7465 7523 750357232 750357174 3.760000e-13 87.9
49 TraesCS4B01G251900 chr4D 88.111 1985 149 41 708 2644 420139205 420141150 0.000000e+00 2278.0
50 TraesCS4B01G251900 chr4D 90.599 1085 71 18 5837 6904 420141279 420142349 0.000000e+00 1410.0
51 TraesCS4B01G251900 chr4D 94.253 87 4 1 7402 7487 191277145 191277059 1.710000e-26 132.0
52 TraesCS4B01G251900 chr4D 91.954 87 5 2 7393 7478 191277062 191277147 3.710000e-23 121.0
53 TraesCS4B01G251900 chr4D 98.485 66 1 0 7331 7396 375134916 375134981 4.800000e-22 117.0
54 TraesCS4B01G251900 chr4D 88.660 97 6 1 7392 7483 71381011 71380915 6.210000e-21 113.0
55 TraesCS4B01G251900 chr4D 88.119 101 5 3 7403 7497 71380923 71381022 6.210000e-21 113.0
56 TraesCS4B01G251900 chr4D 93.151 73 3 2 7327 7398 177433311 177433240 1.040000e-18 106.0
57 TraesCS4B01G251900 chr4D 92.958 71 5 0 2570 2640 508817714 508817644 3.740000e-18 104.0
58 TraesCS4B01G251900 chr4D 97.917 48 1 0 2649 2696 43670376 43670329 4.870000e-12 84.2
59 TraesCS4B01G251900 chr4D 95.833 48 0 2 7481 7526 220347089 220347136 8.150000e-10 76.8
60 TraesCS4B01G251900 chr6B 92.628 1587 108 3 4252 5838 19039342 19037765 0.000000e+00 2274.0
61 TraesCS4B01G251900 chr6B 90.515 1592 149 2 4246 5837 347865265 347866854 0.000000e+00 2102.0
62 TraesCS4B01G251900 chr6B 92.308 1339 68 15 2946 4253 139459199 139460533 0.000000e+00 1869.0
63 TraesCS4B01G251900 chr6B 91.869 1279 57 21 3011 4253 138698797 138697530 0.000000e+00 1742.0
64 TraesCS4B01G251900 chr6B 91.103 281 19 4 2943 3221 101677336 101677060 7.180000e-100 375.0
65 TraesCS4B01G251900 chr6B 88.162 321 29 7 2943 3259 139461282 139461597 2.580000e-99 374.0
66 TraesCS4B01G251900 chr6B 94.574 129 7 0 2685 2813 69718434 69718562 4.630000e-47 200.0
67 TraesCS4B01G251900 chr6B 85.279 197 25 4 7330 7523 503548072 503547877 4.630000e-47 200.0
68 TraesCS4B01G251900 chr6B 86.207 145 10 3 2500 2644 82157973 82158107 1.700000e-31 148.0
69 TraesCS4B01G251900 chr7D 89.198 1296 118 15 2977 4255 110571302 110570012 0.000000e+00 1598.0
70 TraesCS4B01G251900 chr7D 95.407 675 29 2 26 700 33694840 33695512 0.000000e+00 1074.0
71 TraesCS4B01G251900 chr7D 87.755 147 9 2 2498 2644 197927005 197927142 6.080000e-36 163.0
72 TraesCS4B01G251900 chr7D 82.114 123 10 9 2518 2640 41231361 41231251 2.250000e-15 95.3
73 TraesCS4B01G251900 chr7D 96.000 50 2 0 7481 7530 44730108 44730059 1.750000e-11 82.4
74 TraesCS4B01G251900 chr5D 96.888 707 19 3 1 707 417615133 417615836 0.000000e+00 1181.0
75 TraesCS4B01G251900 chr5D 95.276 127 6 0 2685 2811 500133601 500133475 1.290000e-47 202.0
76 TraesCS4B01G251900 chr5D 92.708 96 5 2 7392 7485 479123567 479123662 3.690000e-28 137.0
77 TraesCS4B01G251900 chr5D 91.667 96 3 1 7395 7485 34445610 34445515 2.220000e-25 128.0
78 TraesCS4B01G251900 chr5D 91.579 95 3 1 7394 7483 34445516 34445610 7.980000e-25 126.0
79 TraesCS4B01G251900 chr5D 95.588 68 3 0 7331 7398 205794640 205794707 8.040000e-20 110.0
80 TraesCS4B01G251900 chr2B 96.586 703 23 1 1 703 644514026 644513325 0.000000e+00 1164.0
81 TraesCS4B01G251900 chr2B 91.837 98 3 2 7395 7488 26724762 26724666 1.710000e-26 132.0
82 TraesCS4B01G251900 chr2B 91.667 96 4 1 7392 7483 26724667 26724762 6.170000e-26 130.0
83 TraesCS4B01G251900 chr2B 92.105 76 4 2 7323 7398 601206835 601206908 1.040000e-18 106.0
84 TraesCS4B01G251900 chr2B 100.000 28 0 0 1 28 707247508 707247481 1.400000e-02 52.8
85 TraesCS4B01G251900 chr1D 96.006 676 25 2 26 701 462285592 462286265 0.000000e+00 1098.0
86 TraesCS4B01G251900 chr1D 89.247 93 5 5 7395 7483 36612037 36611946 2.230000e-20 111.0
87 TraesCS4B01G251900 chr1D 89.130 92 7 3 7395 7483 36611946 36612037 2.230000e-20 111.0
88 TraesCS4B01G251900 chr1D 93.846 65 4 0 7334 7398 37458330 37458266 1.740000e-16 99.0
89 TraesCS4B01G251900 chr1D 86.667 90 7 2 7403 7487 1591997 1591908 2.250000e-15 95.3
90 TraesCS4B01G251900 chr1D 87.805 82 7 2 7405 7485 142966688 142966609 8.090000e-15 93.5
91 TraesCS4B01G251900 chr1D 83.168 101 11 3 7395 7490 1591912 1592011 3.760000e-13 87.9
92 TraesCS4B01G251900 chr1D 97.674 43 1 0 7481 7523 66630321 66630363 2.930000e-09 75.0
93 TraesCS4B01G251900 chr1D 92.000 50 3 1 7481 7530 298620913 298620961 1.360000e-07 69.4
94 TraesCS4B01G251900 chr1D 89.091 55 4 2 7481 7535 284238270 284238218 4.900000e-07 67.6
95 TraesCS4B01G251900 chr2D 95.428 678 28 3 26 702 56312831 56313506 0.000000e+00 1077.0
96 TraesCS4B01G251900 chr2D 93.846 130 8 0 2682 2811 58672124 58672253 6.000000e-46 196.0
97 TraesCS4B01G251900 chr2D 86.614 127 8 2 2518 2644 14772141 14772024 1.710000e-26 132.0
98 TraesCS4B01G251900 chr2D 84.252 127 10 6 2511 2635 603786511 603786629 1.730000e-21 115.0
99 TraesCS4B01G251900 chr2D 84.252 127 9 4 2518 2644 195295020 195294905 6.210000e-21 113.0
100 TraesCS4B01G251900 chr2D 100.000 43 0 0 2646 2688 32480779 32480821 6.300000e-11 80.5
101 TraesCS4B01G251900 chr5A 94.444 702 34 4 1 702 38125332 38126028 0.000000e+00 1075.0
102 TraesCS4B01G251900 chr5A 82.609 115 19 1 2500 2614 366234701 366234814 4.840000e-17 100.0
103 TraesCS4B01G251900 chr5A 98.039 51 1 0 2646 2696 436331688 436331738 1.050000e-13 89.8
104 TraesCS4B01G251900 chr1A 94.143 700 39 2 1 700 320386674 320385977 0.000000e+00 1064.0
105 TraesCS4B01G251900 chr1A 90.411 73 6 1 7452 7524 345790656 345790585 2.250000e-15 95.3
106 TraesCS4B01G251900 chr1A 98.039 51 1 0 7481 7531 474641716 474641666 1.050000e-13 89.8
107 TraesCS4B01G251900 chr1B 91.398 279 17 5 2946 3221 160316315 160316589 7.180000e-100 375.0
108 TraesCS4B01G251900 chr1B 88.772 285 18 8 2943 3221 467744126 467743850 3.390000e-88 337.0
109 TraesCS4B01G251900 chr1B 92.208 154 8 4 2662 2811 464481594 464481747 1.660000e-51 215.0
110 TraesCS4B01G251900 chr1B 89.412 85 9 0 7337 7421 451733179 451733263 2.890000e-19 108.0
111 TraesCS4B01G251900 chr3D 88.189 254 20 3 2977 3221 313895929 313895677 2.070000e-75 294.0
112 TraesCS4B01G251900 chr3D 93.617 94 4 1 7392 7483 182423400 182423307 1.020000e-28 139.0
113 TraesCS4B01G251900 chr3D 92.708 96 4 2 7395 7488 182423307 182423401 1.330000e-27 135.0
114 TraesCS4B01G251900 chr3D 100.000 28 0 0 1 28 584476338 584476365 1.400000e-02 52.8
115 TraesCS4B01G251900 chrUn 94.488 127 7 0 2685 2811 293609476 293609602 6.000000e-46 196.0
116 TraesCS4B01G251900 chrUn 94.488 127 7 0 2685 2811 314565327 314565201 6.000000e-46 196.0
117 TraesCS4B01G251900 chrUn 95.238 63 3 0 7336 7398 71312856 71312918 4.840000e-17 100.0
118 TraesCS4B01G251900 chrUn 93.548 62 4 0 7337 7398 8484343 8484404 8.090000e-15 93.5
119 TraesCS4B01G251900 chrUn 89.855 69 7 0 7330 7398 314370566 314370634 1.050000e-13 89.8
120 TraesCS4B01G251900 chrUn 97.872 47 1 0 7440 7486 31545677 31545723 1.750000e-11 82.4
121 TraesCS4B01G251900 chrUn 97.826 46 1 0 7440 7485 19647240 19647285 6.300000e-11 80.5
122 TraesCS4B01G251900 chrUn 97.826 46 1 0 7440 7485 24072643 24072598 6.300000e-11 80.5
123 TraesCS4B01G251900 chrUn 95.918 49 2 0 7440 7488 27078845 27078893 6.300000e-11 80.5
124 TraesCS4B01G251900 chrUn 90.323 62 4 2 7425 7485 154681547 154681607 6.300000e-11 80.5
125 TraesCS4B01G251900 chrUn 97.826 46 1 0 7394 7439 294501938 294501983 6.300000e-11 80.5
126 TraesCS4B01G251900 chrUn 97.826 46 1 0 7394 7439 307106583 307106538 6.300000e-11 80.5
127 TraesCS4B01G251900 chrUn 95.918 49 2 0 7391 7439 319650485 319650437 6.300000e-11 80.5
128 TraesCS4B01G251900 chrUn 97.826 46 1 0 7394 7439 368488262 368488217 6.300000e-11 80.5
129 TraesCS4B01G251900 chrUn 95.918 49 1 1 7440 7488 66416452 66416405 2.270000e-10 78.7
130 TraesCS4B01G251900 chrUn 91.228 57 3 2 7385 7439 66416397 66416453 8.150000e-10 76.8
131 TraesCS4B01G251900 chrUn 89.831 59 5 1 7382 7439 66418724 66418666 2.930000e-09 75.0
132 TraesCS4B01G251900 chrUn 94.000 50 1 2 7485 7534 89396802 89396755 2.930000e-09 75.0
133 TraesCS4B01G251900 chrUn 93.750 48 3 0 7481 7528 347805151 347805198 1.050000e-08 73.1
134 TraesCS4B01G251900 chrUn 92.157 51 3 1 7481 7531 108661243 108661292 3.790000e-08 71.3
135 TraesCS4B01G251900 chrUn 92.000 50 2 2 7481 7529 27746604 27746556 1.360000e-07 69.4
136 TraesCS4B01G251900 chrUn 97.500 40 1 0 7481 7520 48471420 48471381 1.360000e-07 69.4
137 TraesCS4B01G251900 chrUn 93.617 47 2 1 7480 7526 83375479 83375434 1.360000e-07 69.4
138 TraesCS4B01G251900 chr7A 90.698 129 3 2 2498 2626 206959856 206959975 6.080000e-36 163.0
139 TraesCS4B01G251900 chr7A 85.294 136 10 5 2509 2644 701301367 701301492 1.710000e-26 132.0
140 TraesCS4B01G251900 chr7A 95.918 49 0 2 2643 2689 522974727 522974679 2.270000e-10 78.7
141 TraesCS4B01G251900 chr6A 93.421 76 5 0 7323 7398 127607990 127607915 6.210000e-21 113.0
142 TraesCS4B01G251900 chr6A 90.741 54 5 0 2646 2699 206007909 206007856 1.050000e-08 73.1
143 TraesCS4B01G251900 chr2A 89.412 85 9 0 7330 7414 700986009 700986093 2.890000e-19 108.0
144 TraesCS4B01G251900 chr2A 86.598 97 10 3 2499 2595 333733551 333733458 3.740000e-18 104.0
145 TraesCS4B01G251900 chr6D 92.537 67 4 1 7463 7529 62122758 62122693 2.250000e-15 95.3
146 TraesCS4B01G251900 chr6D 97.727 44 1 0 7481 7524 374820246 374820203 8.150000e-10 76.8
147 TraesCS4B01G251900 chr3A 91.525 59 4 1 2646 2703 217723342 217723400 6.300000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G251900 chr4B 517958900 517966473 7573 True 13987.0 13987 100.0000 1 7574 1 chr4B.!!$R6 7573
1 TraesCS4B01G251900 chr4B 409481689 409483273 1584 False 2457.0 2457 94.6410 4252 5837 1 chr4B.!!$F3 1585
2 TraesCS4B01G251900 chr4B 324974002 324975568 1566 True 2235.0 2235 92.3080 4252 5837 1 chr4B.!!$R2 1585
3 TraesCS4B01G251900 chr4B 186151018 186152247 1229 False 1681.0 1681 91.3710 3021 4253 1 chr4B.!!$F2 1232
4 TraesCS4B01G251900 chr4B 404764589 404765287 698 True 1153.0 1153 96.4290 1 700 1 chr4B.!!$R3 699
5 TraesCS4B01G251900 chr4B 66188265 66188940 675 True 1062.0 1062 94.9850 26 703 1 chr4B.!!$R1 677
6 TraesCS4B01G251900 chr4B 181517992 181521184 3192 False 375.5 381 91.4895 2946 3221 2 chr4B.!!$F6 275
7 TraesCS4B01G251900 chr5B 94094319 94095910 1591 False 2564.0 2564 95.7290 4246 5837 1 chr5B.!!$F1 1591
8 TraesCS4B01G251900 chr5B 699609345 699610936 1591 True 2527.0 2527 95.3520 4252 5839 1 chr5B.!!$R4 1587
9 TraesCS4B01G251900 chr5B 440552379 440555368 2989 True 1322.0 2187 94.7945 2943 4253 2 chr5B.!!$R5 1310
10 TraesCS4B01G251900 chr5B 52795399 52796637 1238 True 1303.0 1303 86.0020 2962 4176 1 chr5B.!!$R2 1214
11 TraesCS4B01G251900 chr7B 240657431 240659026 1595 False 2529.0 2529 95.3010 4246 5838 1 chr7B.!!$F4 1592
12 TraesCS4B01G251900 chr7B 188935665 188937251 1586 True 2353.0 2353 93.4470 4252 5837 1 chr7B.!!$R1 1585
13 TraesCS4B01G251900 chr7B 31791831 31793160 1329 False 1760.0 1760 90.8480 2939 4253 1 chr7B.!!$F1 1314
14 TraesCS4B01G251900 chr7B 697045506 697047934 2428 True 1179.5 1860 98.3965 2943 4253 2 chr7B.!!$R2 1310
15 TraesCS4B01G251900 chr4A 43362626 43366284 3658 False 962.0 2453 92.5444 797 7383 5 chr4A.!!$F3 6586
16 TraesCS4B01G251900 chr4A 743142802 743145579 2777 True 754.0 1092 87.3975 2943 4135 2 chr4A.!!$R2 1192
17 TraesCS4B01G251900 chr3B 104380555 104382132 1577 True 2353.0 2353 93.5180 4252 5839 1 chr3B.!!$R2 1587
18 TraesCS4B01G251900 chr3B 322297614 322298872 1258 False 1759.0 1759 92.2590 3019 4251 1 chr3B.!!$F2 1232
19 TraesCS4B01G251900 chr3B 51774565 51775815 1250 True 1748.0 1748 92.1370 3019 4253 1 chr3B.!!$R1 1234
20 TraesCS4B01G251900 chr3B 418063198 418063951 753 False 957.0 957 90.1060 2978 3710 1 chr3B.!!$F3 732
21 TraesCS4B01G251900 chr4D 420139205 420142349 3144 False 1844.0 2278 89.3550 708 6904 2 chr4D.!!$F5 6196
22 TraesCS4B01G251900 chr6B 19037765 19039342 1577 True 2274.0 2274 92.6280 4252 5838 1 chr6B.!!$R1 1586
23 TraesCS4B01G251900 chr6B 347865265 347866854 1589 False 2102.0 2102 90.5150 4246 5837 1 chr6B.!!$F3 1591
24 TraesCS4B01G251900 chr6B 138697530 138698797 1267 True 1742.0 1742 91.8690 3011 4253 1 chr6B.!!$R3 1242
25 TraesCS4B01G251900 chr6B 139459199 139461597 2398 False 1121.5 1869 90.2350 2943 4253 2 chr6B.!!$F4 1310
26 TraesCS4B01G251900 chr7D 110570012 110571302 1290 True 1598.0 1598 89.1980 2977 4255 1 chr7D.!!$R3 1278
27 TraesCS4B01G251900 chr7D 33694840 33695512 672 False 1074.0 1074 95.4070 26 700 1 chr7D.!!$F1 674
28 TraesCS4B01G251900 chr5D 417615133 417615836 703 False 1181.0 1181 96.8880 1 707 1 chr5D.!!$F3 706
29 TraesCS4B01G251900 chr2B 644513325 644514026 701 True 1164.0 1164 96.5860 1 703 1 chr2B.!!$R2 702
30 TraesCS4B01G251900 chr1D 462285592 462286265 673 False 1098.0 1098 96.0060 26 701 1 chr1D.!!$F5 675
31 TraesCS4B01G251900 chr2D 56312831 56313506 675 False 1077.0 1077 95.4280 26 702 1 chr2D.!!$F2 676
32 TraesCS4B01G251900 chr5A 38125332 38126028 696 False 1075.0 1075 94.4440 1 702 1 chr5A.!!$F1 701
33 TraesCS4B01G251900 chr1A 320385977 320386674 697 True 1064.0 1064 94.1430 1 700 1 chr1A.!!$R1 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
703 705 0.037697 GCCCCAAACGTTTCCCATTC 60.038 55.0 11.37 0.0 0.00 2.67 F
1286 1322 0.249741 CGTTATCACGGGGGTGGATC 60.250 60.0 0.00 0.0 43.16 3.36 F
1819 1889 0.037232 GTACCATCGATAGCCCTGCC 60.037 60.0 0.00 0.0 0.00 4.85 F
2458 2541 0.655915 CACGTGAAAACATTGCGCGA 60.656 50.0 12.10 0.0 38.72 5.87 F
2571 2654 0.664761 CATACGGCCTGAAATGCCTG 59.335 55.0 0.00 0.0 46.40 4.85 F
3966 4197 1.173444 CCTGCTCGAGGGCGTAGTAT 61.173 60.0 15.58 0.0 38.36 2.12 F
5321 7451 0.318441 CTCTTGCGACCACTTCCAGA 59.682 55.0 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1730 1794 0.450583 ATGCGCTGCAAATCAGAGTG 59.549 50.000 9.73 0.0 45.72 3.51 R
2884 2967 0.322816 GAAGATGGCCTGCAAGTGGA 60.323 55.000 3.32 0.0 0.00 4.02 R
3395 3596 1.899814 AGGTTGCAGACTACATTCCGA 59.100 47.619 0.00 0.0 0.00 4.55 R
4401 5475 3.288309 ACCTCCTCCCAGGTGAGT 58.712 61.111 0.00 0.0 45.80 3.41 R
4590 5779 2.124570 GTGGCGATGGATGGCAGT 60.125 61.111 0.00 0.0 43.05 4.40 R
5852 8430 0.034670 AAGGGGTCTCAGAGCAATGC 60.035 55.000 6.14 0.0 0.00 3.56 R
6692 9273 0.104855 TACAGACATGCCGATCAGCC 59.895 55.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 1.202973 CCTCGATAGCACTGAACGCG 61.203 60.000 3.53 3.53 0.00 6.01
172 174 8.839343 CATTTTTAATCTTGGGTTGAAGCTTTT 58.161 29.630 0.00 0.00 0.00 2.27
532 534 3.364441 GCGTTGACCATGGCAGCA 61.364 61.111 13.04 4.91 0.00 4.41
703 705 0.037697 GCCCCAAACGTTTCCCATTC 60.038 55.000 11.37 0.00 0.00 2.67
704 706 1.627864 CCCCAAACGTTTCCCATTCT 58.372 50.000 11.37 0.00 0.00 2.40
705 707 1.544246 CCCCAAACGTTTCCCATTCTC 59.456 52.381 11.37 0.00 0.00 2.87
706 708 2.235016 CCCAAACGTTTCCCATTCTCA 58.765 47.619 11.37 0.00 0.00 3.27
715 717 1.131638 TCCCATTCTCAATCCCTCCG 58.868 55.000 0.00 0.00 0.00 4.63
736 738 1.624312 ACGTCTCCTTCCCTTTTCCTC 59.376 52.381 0.00 0.00 0.00 3.71
760 762 1.610102 CCAGAAGCTTCACTCCACTGG 60.610 57.143 27.57 19.47 37.58 4.00
761 763 1.345741 CAGAAGCTTCACTCCACTGGA 59.654 52.381 27.57 0.00 0.00 3.86
795 797 1.324005 ACCCACCAAACAAACACCCG 61.324 55.000 0.00 0.00 0.00 5.28
1097 1109 0.814457 GACATCTCGGTCAGTGCTCT 59.186 55.000 0.00 0.00 37.73 4.09
1101 1113 1.153862 CTCGGTCAGTGCTCTGCTC 60.154 63.158 10.95 6.58 41.10 4.26
1102 1114 1.594194 CTCGGTCAGTGCTCTGCTCT 61.594 60.000 10.95 0.00 41.10 4.09
1106 1118 0.737019 GTCAGTGCTCTGCTCTGCTC 60.737 60.000 10.95 8.14 45.87 4.26
1107 1119 0.899253 TCAGTGCTCTGCTCTGCTCT 60.899 55.000 10.95 0.00 45.87 4.09
1122 1134 0.980423 GCTCTCCTTCCTTCACACCT 59.020 55.000 0.00 0.00 0.00 4.00
1201 1237 4.646572 GTTCTTGGTGAATCTCTTGGACT 58.353 43.478 0.00 0.00 36.99 3.85
1202 1238 5.566826 CGTTCTTGGTGAATCTCTTGGACTA 60.567 44.000 0.00 0.00 36.99 2.59
1235 1271 2.112815 CCTGATTTCCCGGTTCGCC 61.113 63.158 0.00 0.00 0.00 5.54
1246 1282 1.507141 CGGTTCGCCTGCTTGTTTCT 61.507 55.000 0.00 0.00 34.30 2.52
1256 1292 3.192212 CCTGCTTGTTTCTGGGAGATTTC 59.808 47.826 0.00 0.00 0.00 2.17
1286 1322 0.249741 CGTTATCACGGGGGTGGATC 60.250 60.000 0.00 0.00 43.16 3.36
1330 1374 4.334481 TCAGTTTTCTGTTTTTCTCGTCCC 59.666 41.667 0.00 0.00 46.98 4.46
1347 1391 1.250154 CCCCATCTTTTTCTGCGGCA 61.250 55.000 1.29 1.29 0.00 5.69
1351 1395 2.487762 CCATCTTTTTCTGCGGCAGTTA 59.512 45.455 27.63 15.33 32.61 2.24
1352 1396 3.057596 CCATCTTTTTCTGCGGCAGTTAA 60.058 43.478 27.63 19.74 32.61 2.01
1354 1398 4.846779 TCTTTTTCTGCGGCAGTTAAAT 57.153 36.364 27.63 0.00 32.61 1.40
1395 1439 3.974401 GTCAACATTTCGTGGTTCACATG 59.026 43.478 0.00 0.00 37.44 3.21
1396 1440 3.629855 TCAACATTTCGTGGTTCACATGT 59.370 39.130 0.00 0.00 37.38 3.21
1397 1441 4.097135 TCAACATTTCGTGGTTCACATGTT 59.903 37.500 0.00 8.46 38.28 2.71
1410 1457 5.929992 GGTTCACATGTTGTTACTGCTACTA 59.070 40.000 0.00 0.00 0.00 1.82
1445 1495 2.487762 TGGGTTCTTGAACGCATTCATC 59.512 45.455 23.14 2.46 44.36 2.92
1448 1498 3.189287 GGTTCTTGAACGCATTCATCTGT 59.811 43.478 0.00 0.00 44.36 3.41
1483 1534 6.849697 TCTTATATTCTTCCTCCTTTAGGCCA 59.150 38.462 5.01 0.00 46.10 5.36
1532 1583 2.024414 ACCAGCGAAAGTTCTTGCTTT 58.976 42.857 0.00 0.00 40.94 3.51
1730 1794 1.467342 GTCACAGCGAATAACCCAACC 59.533 52.381 0.00 0.00 0.00 3.77
1732 1796 1.199097 CACAGCGAATAACCCAACCAC 59.801 52.381 0.00 0.00 0.00 4.16
1739 1804 4.261801 CGAATAACCCAACCACTCTGATT 58.738 43.478 0.00 0.00 0.00 2.57
1774 1839 3.003763 ACCGTGGAGGAGAAGGCC 61.004 66.667 0.00 0.00 45.00 5.19
1783 1848 0.040204 AGGAGAAGGCCAAATGGGTG 59.960 55.000 5.01 0.00 39.65 4.61
1792 1857 1.611491 GCCAAATGGGTGTTCGAGAAA 59.389 47.619 0.90 0.00 39.65 2.52
1804 1869 4.210746 GTGTTCGAGAAACTCAAAGGTACC 59.789 45.833 2.73 2.73 38.76 3.34
1811 1881 6.540438 AGAAACTCAAAGGTACCATCGATA 57.460 37.500 15.94 0.00 0.00 2.92
1814 1884 3.069729 ACTCAAAGGTACCATCGATAGCC 59.930 47.826 15.94 0.00 0.00 3.93
1819 1889 0.037232 GTACCATCGATAGCCCTGCC 60.037 60.000 0.00 0.00 0.00 4.85
1822 1892 2.930562 ATCGATAGCCCTGCCCCC 60.931 66.667 0.00 0.00 0.00 5.40
1893 1963 3.308323 GCAGTTAGTCTGAAGCTACATGC 59.692 47.826 0.00 0.00 46.27 4.06
1925 1995 6.647067 GTCTTAGCAACATCTTCAGTACACTT 59.353 38.462 0.00 0.00 0.00 3.16
1996 2067 2.101415 AGCAAAACAAGGAGTGCTTTCC 59.899 45.455 0.00 0.00 44.79 3.13
2041 2124 0.882042 CGATTTGGATCTGGCTCCGG 60.882 60.000 0.00 0.00 38.21 5.14
2089 2172 5.577164 TCTTTTCGATCTGCAAAGTACTAGC 59.423 40.000 12.06 12.06 0.00 3.42
2179 2262 1.656587 TGCAAAAGCTCCTAGGAGGA 58.343 50.000 34.75 11.89 43.43 3.71
2180 2263 2.200081 TGCAAAAGCTCCTAGGAGGAT 58.800 47.619 34.75 15.65 44.81 3.24
2341 2424 5.178061 TGATTTGGTAGTCTGTAGTGCATG 58.822 41.667 0.00 0.00 0.00 4.06
2426 2509 2.653234 AGTGGTATACTCGGATCCGT 57.347 50.000 32.15 17.81 40.74 4.69
2458 2541 0.655915 CACGTGAAAACATTGCGCGA 60.656 50.000 12.10 0.00 38.72 5.87
2504 2587 5.786401 AATGCGAATGTTCTGAAGTACTC 57.214 39.130 0.00 0.00 0.00 2.59
2507 2590 3.616560 GCGAATGTTCTGAAGTACTCCCA 60.617 47.826 0.00 0.00 0.00 4.37
2571 2654 0.664761 CATACGGCCTGAAATGCCTG 59.335 55.000 0.00 0.00 46.40 4.85
2590 2673 4.282068 CCTGAAATGAGTGAACAAACACG 58.718 43.478 0.00 0.00 44.35 4.49
2614 2697 6.923458 GCTAAAATGCGTCTATATACATCCG 58.077 40.000 0.00 0.00 0.00 4.18
2615 2698 6.750501 GCTAAAATGCGTCTATATACATCCGA 59.249 38.462 0.00 0.00 0.00 4.55
2616 2699 7.435488 GCTAAAATGCGTCTATATACATCCGAT 59.565 37.037 0.00 0.00 0.00 4.18
2617 2700 9.302345 CTAAAATGCGTCTATATACATCCGATT 57.698 33.333 0.00 0.00 0.00 3.34
2618 2701 7.757097 AAATGCGTCTATATACATCCGATTC 57.243 36.000 0.00 0.00 0.00 2.52
2619 2702 5.890424 TGCGTCTATATACATCCGATTCA 57.110 39.130 0.00 0.00 0.00 2.57
2620 2703 5.880341 TGCGTCTATATACATCCGATTCAG 58.120 41.667 0.00 0.00 0.00 3.02
2621 2704 5.646360 TGCGTCTATATACATCCGATTCAGA 59.354 40.000 0.00 0.00 0.00 3.27
2622 2705 6.150474 TGCGTCTATATACATCCGATTCAGAA 59.850 38.462 0.00 0.00 0.00 3.02
2623 2706 7.027760 GCGTCTATATACATCCGATTCAGAAA 58.972 38.462 0.00 0.00 0.00 2.52
2624 2707 7.541091 GCGTCTATATACATCCGATTCAGAAAA 59.459 37.037 0.00 0.00 0.00 2.29
2625 2708 9.406828 CGTCTATATACATCCGATTCAGAAAAA 57.593 33.333 0.00 0.00 0.00 1.94
2627 2710 9.929180 TCTATATACATCCGATTCAGAAAAAGG 57.071 33.333 0.00 0.00 0.00 3.11
2628 2711 9.712305 CTATATACATCCGATTCAGAAAAAGGT 57.288 33.333 0.00 0.00 0.00 3.50
2629 2712 8.980481 ATATACATCCGATTCAGAAAAAGGTT 57.020 30.769 0.00 0.00 0.00 3.50
2631 2714 8.801882 ATACATCCGATTCAGAAAAAGGTTAA 57.198 30.769 0.00 0.00 0.00 2.01
2632 2715 7.519032 ACATCCGATTCAGAAAAAGGTTAAA 57.481 32.000 0.00 0.00 0.00 1.52
2633 2716 7.947282 ACATCCGATTCAGAAAAAGGTTAAAA 58.053 30.769 0.00 0.00 0.00 1.52
2634 2717 7.865889 ACATCCGATTCAGAAAAAGGTTAAAAC 59.134 33.333 0.00 0.00 0.00 2.43
2635 2718 6.432107 TCCGATTCAGAAAAAGGTTAAAACG 58.568 36.000 0.00 0.00 0.00 3.60
2636 2719 6.038492 TCCGATTCAGAAAAAGGTTAAAACGT 59.962 34.615 0.00 0.00 0.00 3.99
2637 2720 6.358822 CCGATTCAGAAAAAGGTTAAAACGTC 59.641 38.462 0.00 0.00 0.00 4.34
2638 2721 7.130269 CGATTCAGAAAAAGGTTAAAACGTCT 58.870 34.615 0.00 0.00 0.00 4.18
2639 2722 7.642586 CGATTCAGAAAAAGGTTAAAACGTCTT 59.357 33.333 0.00 0.00 0.00 3.01
2640 2723 8.628882 ATTCAGAAAAAGGTTAAAACGTCTTG 57.371 30.769 0.00 0.00 0.00 3.02
2641 2724 7.148355 TCAGAAAAAGGTTAAAACGTCTTGT 57.852 32.000 0.00 0.00 0.00 3.16
2642 2725 8.266392 TCAGAAAAAGGTTAAAACGTCTTGTA 57.734 30.769 0.00 0.00 0.00 2.41
2643 2726 8.728833 TCAGAAAAAGGTTAAAACGTCTTGTAA 58.271 29.630 0.00 0.00 0.00 2.41
2644 2727 9.006215 CAGAAAAAGGTTAAAACGTCTTGTAAG 57.994 33.333 0.00 0.00 0.00 2.34
2645 2728 7.699391 AGAAAAAGGTTAAAACGTCTTGTAAGC 59.301 33.333 0.00 0.00 0.00 3.09
2646 2729 6.688637 AAAGGTTAAAACGTCTTGTAAGCT 57.311 33.333 0.00 0.00 36.20 3.74
2647 2730 7.790823 AAAGGTTAAAACGTCTTGTAAGCTA 57.209 32.000 3.03 0.00 34.19 3.32
2648 2731 7.974482 AAGGTTAAAACGTCTTGTAAGCTAT 57.026 32.000 3.03 0.00 34.19 2.97
2668 2751 9.778741 AAGCTATATACATCCGATTCAGAAAAA 57.221 29.630 0.00 0.00 0.00 1.94
2693 2776 7.842887 AGTTAGAACATCTTATACTCCCTCC 57.157 40.000 0.00 0.00 0.00 4.30
2694 2777 6.490721 AGTTAGAACATCTTATACTCCCTCCG 59.509 42.308 0.00 0.00 0.00 4.63
2695 2778 4.805744 AGAACATCTTATACTCCCTCCGT 58.194 43.478 0.00 0.00 0.00 4.69
2696 2779 5.209659 AGAACATCTTATACTCCCTCCGTT 58.790 41.667 0.00 0.00 0.00 4.44
2697 2780 5.302313 AGAACATCTTATACTCCCTCCGTTC 59.698 44.000 0.00 0.00 0.00 3.95
2698 2781 3.896272 ACATCTTATACTCCCTCCGTTCC 59.104 47.826 0.00 0.00 0.00 3.62
2699 2782 3.675348 TCTTATACTCCCTCCGTTCCA 57.325 47.619 0.00 0.00 0.00 3.53
2700 2783 3.985127 TCTTATACTCCCTCCGTTCCAA 58.015 45.455 0.00 0.00 0.00 3.53
2701 2784 4.355549 TCTTATACTCCCTCCGTTCCAAA 58.644 43.478 0.00 0.00 0.00 3.28
2702 2785 4.966805 TCTTATACTCCCTCCGTTCCAAAT 59.033 41.667 0.00 0.00 0.00 2.32
2703 2786 5.427481 TCTTATACTCCCTCCGTTCCAAATT 59.573 40.000 0.00 0.00 0.00 1.82
2704 2787 6.612456 TCTTATACTCCCTCCGTTCCAAATTA 59.388 38.462 0.00 0.00 0.00 1.40
2705 2788 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2706 2789 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2707 2790 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
2708 2791 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
2720 2803 5.151297 CAAATTACTTGGCCTCCATTTGT 57.849 39.130 3.32 0.00 31.53 2.83
2721 2804 5.170748 CAAATTACTTGGCCTCCATTTGTC 58.829 41.667 3.32 0.00 31.53 3.18
2722 2805 3.806949 TTACTTGGCCTCCATTTGTCT 57.193 42.857 3.32 0.00 31.53 3.41
2723 2806 4.919774 TTACTTGGCCTCCATTTGTCTA 57.080 40.909 3.32 0.00 31.53 2.59
2724 2807 3.356529 ACTTGGCCTCCATTTGTCTAG 57.643 47.619 3.32 0.00 31.53 2.43
2725 2808 2.912956 ACTTGGCCTCCATTTGTCTAGA 59.087 45.455 3.32 0.00 31.53 2.43
2726 2809 3.525199 ACTTGGCCTCCATTTGTCTAGAT 59.475 43.478 3.32 0.00 31.53 1.98
2727 2810 4.721776 ACTTGGCCTCCATTTGTCTAGATA 59.278 41.667 3.32 0.00 31.53 1.98
2728 2811 5.370880 ACTTGGCCTCCATTTGTCTAGATAT 59.629 40.000 3.32 0.00 31.53 1.63
2729 2812 5.233083 TGGCCTCCATTTGTCTAGATATG 57.767 43.478 3.32 0.81 0.00 1.78
2730 2813 4.042062 TGGCCTCCATTTGTCTAGATATGG 59.958 45.833 18.45 18.45 39.09 2.74
2731 2814 4.287067 GGCCTCCATTTGTCTAGATATGGA 59.713 45.833 22.55 22.55 43.11 3.41
2732 2815 5.045286 GGCCTCCATTTGTCTAGATATGGAT 60.045 44.000 23.47 5.22 43.99 3.41
2733 2816 5.879223 GCCTCCATTTGTCTAGATATGGATG 59.121 44.000 23.47 21.80 43.99 3.51
2734 2817 6.521427 GCCTCCATTTGTCTAGATATGGATGT 60.521 42.308 23.47 0.00 43.99 3.06
2735 2818 7.310671 GCCTCCATTTGTCTAGATATGGATGTA 60.311 40.741 23.47 10.29 43.99 2.29
2736 2819 8.766476 CCTCCATTTGTCTAGATATGGATGTAT 58.234 37.037 23.47 0.00 43.99 2.29
2737 2820 9.814899 CTCCATTTGTCTAGATATGGATGTATC 57.185 37.037 23.47 0.00 43.99 2.24
2738 2821 9.552695 TCCATTTGTCTAGATATGGATGTATCT 57.447 33.333 21.20 2.43 41.10 1.98
2786 2869 9.088512 ACATTCGTATCTAGACAAATGAAAGTC 57.911 33.333 18.03 0.00 35.02 3.01
2787 2870 9.087424 CATTCGTATCTAGACAAATGAAAGTCA 57.913 33.333 0.00 0.00 37.23 3.41
2788 2871 9.653287 ATTCGTATCTAGACAAATGAAAGTCAA 57.347 29.630 0.00 0.00 37.23 3.18
2789 2872 8.689251 TCGTATCTAGACAAATGAAAGTCAAG 57.311 34.615 0.00 0.00 37.23 3.02
2790 2873 8.304596 TCGTATCTAGACAAATGAAAGTCAAGT 58.695 33.333 0.00 0.00 37.23 3.16
2791 2874 9.569167 CGTATCTAGACAAATGAAAGTCAAGTA 57.431 33.333 0.00 0.00 37.23 2.24
2798 2881 8.912988 AGACAAATGAAAGTCAAGTAATTTGGA 58.087 29.630 9.85 0.00 38.63 3.53
2799 2882 9.528018 GACAAATGAAAGTCAAGTAATTTGGAA 57.472 29.630 9.85 0.00 38.63 3.53
2800 2883 9.313118 ACAAATGAAAGTCAAGTAATTTGGAAC 57.687 29.630 9.85 0.00 38.63 3.62
2801 2884 8.479280 CAAATGAAAGTCAAGTAATTTGGAACG 58.521 33.333 0.00 0.00 37.39 3.95
2802 2885 6.067263 TGAAAGTCAAGTAATTTGGAACGG 57.933 37.500 0.00 0.00 37.39 4.44
2803 2886 5.823570 TGAAAGTCAAGTAATTTGGAACGGA 59.176 36.000 0.00 0.00 37.39 4.69
2804 2887 5.941948 AAGTCAAGTAATTTGGAACGGAG 57.058 39.130 0.00 0.00 37.39 4.63
2805 2888 4.324267 AGTCAAGTAATTTGGAACGGAGG 58.676 43.478 0.00 0.00 37.39 4.30
2806 2889 3.439129 GTCAAGTAATTTGGAACGGAGGG 59.561 47.826 0.00 0.00 37.39 4.30
2807 2890 3.328343 TCAAGTAATTTGGAACGGAGGGA 59.672 43.478 0.00 0.00 37.39 4.20
2808 2891 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2809 2892 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2810 2893 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2825 2908 4.553678 AGGGAGTAATATTGAACGGAGGA 58.446 43.478 0.00 0.00 0.00 3.71
2836 2919 3.724374 TGAACGGAGGAAGTAGTTTGTG 58.276 45.455 0.00 0.00 0.00 3.33
3487 3697 3.605946 TTGAAGCACAACCCTTGGT 57.394 47.368 0.00 0.00 37.65 3.67
3966 4197 1.173444 CCTGCTCGAGGGCGTAGTAT 61.173 60.000 15.58 0.00 38.36 2.12
4779 6039 1.902508 CAGTATGGGATGCCCTACGAT 59.097 52.381 11.98 0.00 45.70 3.73
4793 6053 1.099295 TACGATGGGAGTGCGACGAT 61.099 55.000 0.00 0.00 0.00 3.73
4975 6907 2.982130 GGGAGATGCGTGGTCTGT 59.018 61.111 0.00 0.00 0.00 3.41
5030 6963 4.237445 GGACCTCGATCTCGTCCA 57.763 61.111 14.53 0.00 44.60 4.02
5049 6982 3.000819 TGCGTCGGGGATCTTGGT 61.001 61.111 0.00 0.00 0.00 3.67
5099 7032 4.896829 TGTTTTCCCCGCGGGCAA 62.897 61.111 39.46 30.27 43.94 4.52
5126 7059 2.486636 AAAGTCTGCGACATCGGCGA 62.487 55.000 13.87 13.87 40.23 5.54
5233 7363 2.836154 GAAGGCAGGGTGTCACCA 59.164 61.111 23.48 0.00 41.02 4.17
5321 7451 0.318441 CTCTTGCGACCACTTCCAGA 59.682 55.000 0.00 0.00 0.00 3.86
5607 8180 6.542370 GGGGTGTAGTGTTAGAGTACGTAATA 59.458 42.308 0.00 0.00 33.62 0.98
5611 8184 7.011857 GTGTAGTGTTAGAGTACGTAATAGGCT 59.988 40.741 0.00 0.00 33.62 4.58
5664 8240 1.867865 GATAAGGGTCGCTTGCTTAGC 59.132 52.381 12.19 0.00 46.83 3.09
5852 8430 6.327934 GCCATAACAGTAGGTATACGGTATG 58.672 44.000 10.86 6.02 39.07 2.39
5867 8445 2.216898 GGTATGCATTGCTCTGAGACC 58.783 52.381 3.54 0.00 0.00 3.85
5868 8446 2.216898 GTATGCATTGCTCTGAGACCC 58.783 52.381 3.54 0.00 0.00 4.46
5881 8459 4.947883 TCTGAGACCCCTTTCTTCTGATA 58.052 43.478 0.00 0.00 0.00 2.15
5923 8501 7.609532 TGAATTTCCCATTTTCACACTTTGTTT 59.390 29.630 0.00 0.00 0.00 2.83
5924 8502 6.734104 TTTCCCATTTTCACACTTTGTTTG 57.266 33.333 0.00 0.00 0.00 2.93
5926 8504 6.232581 TCCCATTTTCACACTTTGTTTGAT 57.767 33.333 0.00 0.00 0.00 2.57
5979 8557 6.905544 TCGTCATTTACACTTTACACACAA 57.094 33.333 0.00 0.00 0.00 3.33
6006 8584 9.674824 CATTCTCCATATATTTGAACTTTGCTC 57.325 33.333 0.00 0.00 0.00 4.26
6046 8624 2.859165 TCTGAATTCCCTTCTGCGTT 57.141 45.000 2.27 0.00 34.75 4.84
6084 8662 2.583024 TCTCATGCCATGGTTCACAA 57.417 45.000 14.67 0.00 0.00 3.33
6090 8668 0.675633 GCCATGGTTCACAAGTTGCT 59.324 50.000 14.67 0.00 0.00 3.91
6168 8746 9.516546 TGTCTACTATATATGGACTACAAGTGG 57.483 37.037 2.68 0.00 0.00 4.00
6574 9152 2.855887 TCCGTCGAGGAGTTCTGAG 58.144 57.895 6.70 0.00 45.98 3.35
6576 9154 1.309499 CCGTCGAGGAGTTCTGAGCT 61.309 60.000 6.70 0.00 45.00 4.09
6577 9155 0.098025 CGTCGAGGAGTTCTGAGCTC 59.902 60.000 12.50 12.50 0.00 4.09
6578 9156 1.169577 GTCGAGGAGTTCTGAGCTCA 58.830 55.000 17.19 17.19 34.83 4.26
6597 9176 2.690497 TCAGTCTGATGATCCGTCTTCC 59.310 50.000 0.00 0.00 0.00 3.46
6601 9180 4.522405 AGTCTGATGATCCGTCTTCCTATG 59.478 45.833 0.00 0.00 0.00 2.23
6602 9181 4.520874 GTCTGATGATCCGTCTTCCTATGA 59.479 45.833 0.00 0.00 0.00 2.15
6603 9182 5.184864 GTCTGATGATCCGTCTTCCTATGAT 59.815 44.000 0.00 0.00 0.00 2.45
6604 9183 5.417266 TCTGATGATCCGTCTTCCTATGATC 59.583 44.000 0.00 0.00 33.96 2.92
6605 9184 4.464244 TGATGATCCGTCTTCCTATGATCC 59.536 45.833 0.00 0.00 32.70 3.36
6606 9185 4.119556 TGATCCGTCTTCCTATGATCCT 57.880 45.455 0.00 0.00 32.70 3.24
6607 9186 5.256806 TGATCCGTCTTCCTATGATCCTA 57.743 43.478 0.00 0.00 32.70 2.94
6608 9187 5.832221 TGATCCGTCTTCCTATGATCCTAT 58.168 41.667 0.00 0.00 32.70 2.57
6616 9195 7.012894 CGTCTTCCTATGATCCTATCCATAGTC 59.987 44.444 0.00 0.00 40.15 2.59
6649 9228 4.016444 GTGCCATTCTTTTGAGTCCCATA 58.984 43.478 0.00 0.00 0.00 2.74
6652 9231 4.038402 GCCATTCTTTTGAGTCCCATATGG 59.962 45.833 15.41 15.41 34.54 2.74
6653 9232 5.203528 CCATTCTTTTGAGTCCCATATGGT 58.796 41.667 20.46 1.65 34.77 3.55
6669 9250 0.692756 TGGTGTGTGGTTCCTGAGGA 60.693 55.000 0.00 0.00 0.00 3.71
6683 9264 1.204704 CTGAGGACGTGCTGGTGATTA 59.795 52.381 16.62 0.00 0.00 1.75
6684 9265 1.204704 TGAGGACGTGCTGGTGATTAG 59.795 52.381 16.62 0.00 0.00 1.73
6692 9273 2.684881 GTGCTGGTGATTAGATTGGTGG 59.315 50.000 0.00 0.00 0.00 4.61
6723 9307 4.158394 GGCATGTCTGTACATTGGATTTGT 59.842 41.667 0.00 0.00 44.07 2.83
6725 9309 5.801947 GCATGTCTGTACATTGGATTTGTTC 59.198 40.000 0.00 0.00 44.07 3.18
6726 9310 6.349611 GCATGTCTGTACATTGGATTTGTTCT 60.350 38.462 0.00 0.00 44.07 3.01
6727 9311 6.801539 TGTCTGTACATTGGATTTGTTCTC 57.198 37.500 0.00 0.00 0.00 2.87
6728 9312 5.705441 TGTCTGTACATTGGATTTGTTCTCC 59.295 40.000 0.00 0.00 0.00 3.71
6729 9313 5.940470 GTCTGTACATTGGATTTGTTCTCCT 59.060 40.000 0.00 0.00 33.69 3.69
6730 9314 7.103641 GTCTGTACATTGGATTTGTTCTCCTA 58.896 38.462 0.00 0.00 33.69 2.94
6731 9315 7.606456 GTCTGTACATTGGATTTGTTCTCCTAA 59.394 37.037 0.00 0.00 33.69 2.69
6733 9317 6.884295 TGTACATTGGATTTGTTCTCCTAAGG 59.116 38.462 0.00 0.00 33.69 2.69
6734 9318 6.139679 ACATTGGATTTGTTCTCCTAAGGA 57.860 37.500 0.00 0.00 33.69 3.36
6735 9319 6.552008 ACATTGGATTTGTTCTCCTAAGGAA 58.448 36.000 0.00 0.00 33.69 3.36
6765 9384 5.460646 GTGTCCCAGTAATGTGAACATTTG 58.539 41.667 13.53 7.30 43.48 2.32
6792 9411 0.662619 TTCTGGCTTTGTGTTGCTCG 59.337 50.000 0.00 0.00 0.00 5.03
6904 9523 4.494350 TCAGCAAGCTTTCAGACATTTC 57.506 40.909 0.00 0.00 0.00 2.17
6906 9525 1.981533 GCAAGCTTTCAGACATTTCGC 59.018 47.619 0.00 0.00 0.00 4.70
6907 9526 2.236690 CAAGCTTTCAGACATTTCGCG 58.763 47.619 0.00 0.00 0.00 5.87
6908 9527 1.795768 AGCTTTCAGACATTTCGCGA 58.204 45.000 3.71 3.71 0.00 5.87
6909 9528 1.461127 AGCTTTCAGACATTTCGCGAC 59.539 47.619 9.15 0.00 0.00 5.19
6910 9529 1.194547 GCTTTCAGACATTTCGCGACA 59.805 47.619 9.15 1.21 0.00 4.35
6912 9531 3.062099 GCTTTCAGACATTTCGCGACATA 59.938 43.478 9.15 0.00 0.00 2.29
6913 9532 4.435518 GCTTTCAGACATTTCGCGACATAA 60.436 41.667 9.15 0.00 0.00 1.90
6914 9533 5.599359 TTTCAGACATTTCGCGACATAAA 57.401 34.783 9.15 0.00 0.00 1.40
6915 9534 5.599359 TTCAGACATTTCGCGACATAAAA 57.401 34.783 9.15 0.00 0.00 1.52
6917 9536 4.449405 TCAGACATTTCGCGACATAAAACA 59.551 37.500 9.15 0.00 0.00 2.83
6918 9537 5.050023 TCAGACATTTCGCGACATAAAACAA 60.050 36.000 9.15 0.00 0.00 2.83
6919 9538 5.794945 CAGACATTTCGCGACATAAAACAAT 59.205 36.000 9.15 0.00 0.00 2.71
6920 9539 5.794945 AGACATTTCGCGACATAAAACAATG 59.205 36.000 19.06 19.06 0.00 2.82
6922 9541 5.567534 ACATTTCGCGACATAAAACAATGAC 59.432 36.000 24.65 0.00 0.00 3.06
6973 9680 1.131126 GATGCCAGGAAACACATGACG 59.869 52.381 0.00 0.00 31.40 4.35
6975 9682 1.586154 GCCAGGAAACACATGACGGG 61.586 60.000 0.00 0.00 31.40 5.28
6984 9712 4.503741 AACACATGACGGGATGAAAAAG 57.496 40.909 0.00 0.00 0.00 2.27
6990 9718 5.711976 ACATGACGGGATGAAAAAGAAAGAT 59.288 36.000 0.00 0.00 0.00 2.40
6991 9719 6.884295 ACATGACGGGATGAAAAAGAAAGATA 59.116 34.615 0.00 0.00 0.00 1.98
6992 9720 6.737254 TGACGGGATGAAAAAGAAAGATAC 57.263 37.500 0.00 0.00 0.00 2.24
7012 9740 2.030717 ACTACTCAACTCACACAGCTCG 60.031 50.000 0.00 0.00 0.00 5.03
7068 9797 2.832643 TCAGGTGCATCATCCCAAAT 57.167 45.000 0.00 0.00 0.00 2.32
7079 9808 4.734398 TCATCCCAAATTGCCAATGTAC 57.266 40.909 0.00 0.00 0.00 2.90
7087 9816 5.163385 CCAAATTGCCAATGTACTGGATCAT 60.163 40.000 5.35 0.00 38.96 2.45
7090 9819 2.241941 TGCCAATGTACTGGATCATGGT 59.758 45.455 5.35 0.00 38.96 3.55
7102 9831 8.993121 GTACTGGATCATGGTATTCTTTGTATG 58.007 37.037 0.00 0.00 0.00 2.39
7121 9850 0.738975 GGATTAAGCGGCAGGTTTCC 59.261 55.000 6.60 5.20 39.10 3.13
7163 9894 8.560374 GCAGAAAAAGTCAGTTACAGAAATACT 58.440 33.333 0.00 0.00 0.00 2.12
7168 9899 8.843885 AAAGTCAGTTACAGAAATACTTACCC 57.156 34.615 0.00 0.00 0.00 3.69
7169 9900 7.549147 AGTCAGTTACAGAAATACTTACCCA 57.451 36.000 0.00 0.00 0.00 4.51
7182 9913 9.569167 GAAATACTTACCCAGTTGCTTTTAATC 57.431 33.333 0.00 0.00 36.88 1.75
7184 9915 8.879427 ATACTTACCCAGTTGCTTTTAATCTT 57.121 30.769 0.00 0.00 36.88 2.40
7212 9943 3.384668 CTGTATACAGGCTCCACATTCG 58.615 50.000 22.95 0.00 40.20 3.34
7222 9953 4.774726 AGGCTCCACATTCGATCATATAGT 59.225 41.667 0.00 0.00 0.00 2.12
7223 9954 4.867047 GGCTCCACATTCGATCATATAGTG 59.133 45.833 0.00 0.00 0.00 2.74
7239 9970 1.784525 AGTGTGCTACGAGTTTCTGC 58.215 50.000 0.00 0.00 0.00 4.26
7266 9997 8.950961 CGAAAAATCACATGCTAAACATATCTG 58.049 33.333 0.00 0.00 36.64 2.90
7275 10006 7.928706 ACATGCTAAACATATCTGAACTAGGAC 59.071 37.037 0.00 0.00 36.64 3.85
7279 10010 8.083462 GCTAAACATATCTGAACTAGGACCTAC 58.917 40.741 0.00 0.00 0.00 3.18
7297 10028 3.435671 CCTACCAGTGGTGAACGAAAATC 59.564 47.826 25.64 0.00 36.19 2.17
7324 10055 7.266905 ACTAAGGAATTTCTTGTAAGGGCTA 57.733 36.000 9.41 0.00 0.00 3.93
7340 10071 9.631257 TGTAAGGGCTAGTTTTAATTAATACCC 57.369 33.333 13.23 8.79 0.00 3.69
7349 10080 4.980339 TTAATTAATACCCCCTCCGTCC 57.020 45.455 0.00 0.00 0.00 4.79
7363 10094 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
7371 10102 7.041644 CGTCCCAAAATAAGTGTCTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
7407 10138 5.684550 ACAAAATTGTACTTCTTCCGTCC 57.315 39.130 0.00 0.00 40.16 4.79
7408 10139 4.517832 ACAAAATTGTACTTCTTCCGTCCC 59.482 41.667 0.00 0.00 40.16 4.46
7409 10140 4.360951 AAATTGTACTTCTTCCGTCCCA 57.639 40.909 0.00 0.00 0.00 4.37
7410 10141 4.360951 AATTGTACTTCTTCCGTCCCAA 57.639 40.909 0.00 0.00 0.00 4.12
7411 10142 3.842007 TTGTACTTCTTCCGTCCCAAA 57.158 42.857 0.00 0.00 0.00 3.28
7412 10143 3.842007 TGTACTTCTTCCGTCCCAAAA 57.158 42.857 0.00 0.00 0.00 2.44
7413 10144 4.360951 TGTACTTCTTCCGTCCCAAAAT 57.639 40.909 0.00 0.00 0.00 1.82
7414 10145 4.721132 TGTACTTCTTCCGTCCCAAAATT 58.279 39.130 0.00 0.00 0.00 1.82
7415 10146 4.758165 TGTACTTCTTCCGTCCCAAAATTC 59.242 41.667 0.00 0.00 0.00 2.17
7416 10147 4.100279 ACTTCTTCCGTCCCAAAATTCT 57.900 40.909 0.00 0.00 0.00 2.40
7417 10148 4.470602 ACTTCTTCCGTCCCAAAATTCTT 58.529 39.130 0.00 0.00 0.00 2.52
7418 10149 4.278419 ACTTCTTCCGTCCCAAAATTCTTG 59.722 41.667 0.00 0.00 0.00 3.02
7419 10150 3.827722 TCTTCCGTCCCAAAATTCTTGT 58.172 40.909 0.00 0.00 0.00 3.16
7420 10151 3.818773 TCTTCCGTCCCAAAATTCTTGTC 59.181 43.478 0.00 0.00 0.00 3.18
7421 10152 3.502123 TCCGTCCCAAAATTCTTGTCT 57.498 42.857 0.00 0.00 0.00 3.41
7422 10153 3.827722 TCCGTCCCAAAATTCTTGTCTT 58.172 40.909 0.00 0.00 0.00 3.01
7423 10154 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
7424 10155 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
7425 10156 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
7426 10157 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
7427 10158 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
7428 10159 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
7429 10160 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
7430 10161 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
7431 10162 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
7432 10163 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
7473 10204 9.322776 CAAATCTAAGACAAGAATTTTGAGACG 57.677 33.333 7.18 0.00 31.51 4.18
7474 10205 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
7475 10206 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
7476 10207 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
7477 10208 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
7478 10209 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
7479 10210 3.072476 ACAAGAATTTTGAGACGGAGGGA 59.928 43.478 7.18 0.00 0.00 4.20
7480 10211 3.618690 AGAATTTTGAGACGGAGGGAG 57.381 47.619 0.00 0.00 0.00 4.30
7481 10212 2.907042 AGAATTTTGAGACGGAGGGAGT 59.093 45.455 0.00 0.00 0.00 3.85
7482 10213 4.094476 AGAATTTTGAGACGGAGGGAGTA 58.906 43.478 0.00 0.00 0.00 2.59
7483 10214 3.889520 ATTTTGAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
7484 10215 2.599408 TTTGAGACGGAGGGAGTACT 57.401 50.000 0.00 0.00 0.00 2.73
7485 10216 3.726557 TTTGAGACGGAGGGAGTACTA 57.273 47.619 0.00 0.00 0.00 1.82
7486 10217 3.726557 TTGAGACGGAGGGAGTACTAA 57.273 47.619 0.00 0.00 0.00 2.24
7487 10218 3.278668 TGAGACGGAGGGAGTACTAAG 57.721 52.381 0.00 0.00 0.00 2.18
7488 10219 2.092538 TGAGACGGAGGGAGTACTAAGG 60.093 54.545 0.00 0.00 0.00 2.69
7489 10220 1.921748 AGACGGAGGGAGTACTAAGGT 59.078 52.381 0.00 0.00 0.00 3.50
7490 10221 2.311243 AGACGGAGGGAGTACTAAGGTT 59.689 50.000 0.00 0.00 0.00 3.50
7491 10222 3.525199 AGACGGAGGGAGTACTAAGGTTA 59.475 47.826 0.00 0.00 0.00 2.85
7492 10223 4.018050 AGACGGAGGGAGTACTAAGGTTAA 60.018 45.833 0.00 0.00 0.00 2.01
7493 10224 4.276642 ACGGAGGGAGTACTAAGGTTAAG 58.723 47.826 0.00 0.00 0.00 1.85
7494 10225 4.018050 ACGGAGGGAGTACTAAGGTTAAGA 60.018 45.833 0.00 0.00 0.00 2.10
7495 10226 4.337836 CGGAGGGAGTACTAAGGTTAAGAC 59.662 50.000 0.00 0.00 0.00 3.01
7496 10227 5.267587 GGAGGGAGTACTAAGGTTAAGACA 58.732 45.833 0.00 0.00 0.00 3.41
7497 10228 5.126869 GGAGGGAGTACTAAGGTTAAGACAC 59.873 48.000 0.00 0.00 0.00 3.67
7498 10229 5.901598 AGGGAGTACTAAGGTTAAGACACT 58.098 41.667 0.00 0.00 0.00 3.55
7499 10230 6.321321 AGGGAGTACTAAGGTTAAGACACTT 58.679 40.000 0.00 0.00 0.00 3.16
7500 10231 7.473593 AGGGAGTACTAAGGTTAAGACACTTA 58.526 38.462 0.00 0.00 0.00 2.24
7501 10232 8.121185 AGGGAGTACTAAGGTTAAGACACTTAT 58.879 37.037 0.00 0.00 0.00 1.73
7502 10233 8.756927 GGGAGTACTAAGGTTAAGACACTTATT 58.243 37.037 0.00 0.00 0.00 1.40
7507 10238 8.631480 ACTAAGGTTAAGACACTTATTTTGGG 57.369 34.615 0.00 0.00 0.00 4.12
7508 10239 8.442374 ACTAAGGTTAAGACACTTATTTTGGGA 58.558 33.333 0.00 0.00 0.00 4.37
7509 10240 7.520451 AAGGTTAAGACACTTATTTTGGGAC 57.480 36.000 0.00 0.00 0.00 4.46
7510 10241 5.704053 AGGTTAAGACACTTATTTTGGGACG 59.296 40.000 0.00 0.00 0.00 4.79
7511 10242 5.106436 GGTTAAGACACTTATTTTGGGACGG 60.106 44.000 0.00 0.00 0.00 4.79
7512 10243 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
7513 10244 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
7514 10245 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
7515 10246 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
7516 10247 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
7517 10248 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
7518 10249 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
7519 10250 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
7520 10251 1.272807 TTTTGGGACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
7521 10252 0.115745 TTTGGGACGGAGGGAGTAGT 59.884 55.000 0.00 0.00 0.00 2.73
7522 10253 1.002069 TTGGGACGGAGGGAGTAGTA 58.998 55.000 0.00 0.00 0.00 1.82
7523 10254 1.229131 TGGGACGGAGGGAGTAGTAT 58.771 55.000 0.00 0.00 0.00 2.12
7524 10255 2.421725 TGGGACGGAGGGAGTAGTATA 58.578 52.381 0.00 0.00 0.00 1.47
7525 10256 2.991713 TGGGACGGAGGGAGTAGTATAT 59.008 50.000 0.00 0.00 0.00 0.86
7526 10257 3.400322 TGGGACGGAGGGAGTAGTATATT 59.600 47.826 0.00 0.00 0.00 1.28
7527 10258 4.603171 TGGGACGGAGGGAGTAGTATATTA 59.397 45.833 0.00 0.00 0.00 0.98
7528 10259 5.254737 TGGGACGGAGGGAGTAGTATATTAT 59.745 44.000 0.00 0.00 0.00 1.28
7529 10260 5.593502 GGGACGGAGGGAGTAGTATATTATG 59.406 48.000 0.00 0.00 0.00 1.90
7530 10261 5.593502 GGACGGAGGGAGTAGTATATTATGG 59.406 48.000 0.00 0.00 0.00 2.74
7531 10262 4.954826 ACGGAGGGAGTAGTATATTATGGC 59.045 45.833 0.00 0.00 0.00 4.40
7532 10263 4.954202 CGGAGGGAGTAGTATATTATGGCA 59.046 45.833 0.00 0.00 0.00 4.92
7533 10264 5.598830 CGGAGGGAGTAGTATATTATGGCAT 59.401 44.000 4.88 4.88 0.00 4.40
7534 10265 6.098409 CGGAGGGAGTAGTATATTATGGCATT 59.902 42.308 4.78 0.00 0.00 3.56
7535 10266 7.364762 CGGAGGGAGTAGTATATTATGGCATTT 60.365 40.741 4.78 0.00 0.00 2.32
7536 10267 7.770897 GGAGGGAGTAGTATATTATGGCATTTG 59.229 40.741 4.78 0.00 0.00 2.32
7537 10268 7.633789 AGGGAGTAGTATATTATGGCATTTGG 58.366 38.462 4.78 0.00 0.00 3.28
7538 10269 6.828785 GGGAGTAGTATATTATGGCATTTGGG 59.171 42.308 4.78 0.00 0.00 4.12
7539 10270 6.318900 GGAGTAGTATATTATGGCATTTGGGC 59.681 42.308 4.78 0.00 43.73 5.36
7549 10280 1.549203 GCATTTGGGCCTTCTCTTCA 58.451 50.000 4.53 0.00 0.00 3.02
7550 10281 2.105766 GCATTTGGGCCTTCTCTTCAT 58.894 47.619 4.53 0.00 0.00 2.57
7551 10282 2.159142 GCATTTGGGCCTTCTCTTCATG 60.159 50.000 4.53 0.00 0.00 3.07
7552 10283 3.359033 CATTTGGGCCTTCTCTTCATGA 58.641 45.455 4.53 0.00 0.00 3.07
7553 10284 2.795231 TTGGGCCTTCTCTTCATGAG 57.205 50.000 4.53 0.00 43.96 2.90
7554 10285 0.254178 TGGGCCTTCTCTTCATGAGC 59.746 55.000 4.53 0.00 42.38 4.26
7555 10286 0.545646 GGGCCTTCTCTTCATGAGCT 59.454 55.000 0.84 0.00 42.38 4.09
7556 10287 1.474855 GGGCCTTCTCTTCATGAGCTC 60.475 57.143 6.82 6.82 42.38 4.09
7557 10288 1.485895 GGCCTTCTCTTCATGAGCTCT 59.514 52.381 16.19 0.00 42.38 4.09
7558 10289 2.093021 GGCCTTCTCTTCATGAGCTCTT 60.093 50.000 16.19 5.66 42.38 2.85
7559 10290 3.133721 GGCCTTCTCTTCATGAGCTCTTA 59.866 47.826 16.19 0.00 42.38 2.10
7560 10291 4.370917 GCCTTCTCTTCATGAGCTCTTAG 58.629 47.826 16.19 4.22 42.38 2.18
7561 10292 4.370917 CCTTCTCTTCATGAGCTCTTAGC 58.629 47.826 16.19 0.00 42.38 3.09
7562 10293 4.370917 CTTCTCTTCATGAGCTCTTAGCC 58.629 47.826 16.19 0.00 43.77 3.93
7563 10294 3.641046 TCTCTTCATGAGCTCTTAGCCT 58.359 45.455 16.19 0.00 43.77 4.58
7564 10295 4.797743 TCTCTTCATGAGCTCTTAGCCTA 58.202 43.478 16.19 0.00 43.77 3.93
7565 10296 4.826733 TCTCTTCATGAGCTCTTAGCCTAG 59.173 45.833 16.19 4.86 43.77 3.02
7566 10297 3.894427 TCTTCATGAGCTCTTAGCCTAGG 59.106 47.826 16.19 3.67 43.77 3.02
7567 10298 3.320610 TCATGAGCTCTTAGCCTAGGT 57.679 47.619 16.19 0.00 43.77 3.08
7568 10299 3.226777 TCATGAGCTCTTAGCCTAGGTC 58.773 50.000 16.19 2.66 43.77 3.85
7569 10300 2.074729 TGAGCTCTTAGCCTAGGTCC 57.925 55.000 16.19 0.00 43.77 4.46
7570 10301 1.288037 TGAGCTCTTAGCCTAGGTCCA 59.712 52.381 16.19 0.00 43.77 4.02
7571 10302 2.091055 TGAGCTCTTAGCCTAGGTCCAT 60.091 50.000 16.19 0.00 43.77 3.41
7572 10303 2.298729 GAGCTCTTAGCCTAGGTCCATG 59.701 54.545 11.31 0.00 43.77 3.66
7573 10304 1.270571 GCTCTTAGCCTAGGTCCATGC 60.271 57.143 11.31 4.95 34.48 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 6.128849 CCAAGATTAAAAATGCTTCAACCGTG 60.129 38.462 0.00 0.00 0.00 4.94
172 174 1.153269 TGCTGCAACCGTTGACAGA 60.153 52.632 26.38 15.40 37.13 3.41
268 270 6.709018 ACTGTGTTTTGGTTTTGCTACTAT 57.291 33.333 0.00 0.00 0.00 2.12
305 307 2.419198 GCGAGATGGCGGATGACT 59.581 61.111 0.00 0.00 0.00 3.41
507 509 3.329542 ATGGTCAACGCATCGCCCT 62.330 57.895 0.00 0.00 0.00 5.19
532 534 4.796606 CATCTCTCTCTTTCTCTCTCCCT 58.203 47.826 0.00 0.00 0.00 4.20
703 705 0.382515 GAGACGTCGGAGGGATTGAG 59.617 60.000 10.46 0.00 0.00 3.02
704 706 1.035932 GGAGACGTCGGAGGGATTGA 61.036 60.000 10.46 0.00 0.00 2.57
705 707 1.038130 AGGAGACGTCGGAGGGATTG 61.038 60.000 10.46 0.00 0.00 2.67
706 708 0.324460 AAGGAGACGTCGGAGGGATT 60.324 55.000 10.46 0.00 0.00 3.01
715 717 1.624312 AGGAAAAGGGAAGGAGACGTC 59.376 52.381 7.70 7.70 38.20 4.34
736 738 1.898472 TGGAGTGAAGCTTCTGGAGAG 59.102 52.381 26.09 0.00 0.00 3.20
760 762 3.248171 GTGCGTGCGACGGATCTC 61.248 66.667 10.02 0.00 45.20 2.75
761 763 4.796231 GGTGCGTGCGACGGATCT 62.796 66.667 10.02 0.00 45.20 2.75
823 825 1.598685 GCTTTCGTTCGGGGTTCCA 60.599 57.895 0.00 0.00 0.00 3.53
836 838 5.205565 CGGAATAAATAAAGAGCGGCTTTC 58.794 41.667 2.97 0.06 43.17 2.62
996 1008 0.692419 TGAGGGCCTTCTCCATCCTC 60.692 60.000 16.82 4.70 43.06 3.71
1097 1109 0.901124 GAAGGAAGGAGAGCAGAGCA 59.099 55.000 0.00 0.00 0.00 4.26
1101 1113 1.338579 GGTGTGAAGGAAGGAGAGCAG 60.339 57.143 0.00 0.00 0.00 4.24
1102 1114 0.687354 GGTGTGAAGGAAGGAGAGCA 59.313 55.000 0.00 0.00 0.00 4.26
1103 1115 0.980423 AGGTGTGAAGGAAGGAGAGC 59.020 55.000 0.00 0.00 0.00 4.09
1106 1118 2.553247 GGGAAAGGTGTGAAGGAAGGAG 60.553 54.545 0.00 0.00 0.00 3.69
1107 1119 1.423921 GGGAAAGGTGTGAAGGAAGGA 59.576 52.381 0.00 0.00 0.00 3.36
1122 1134 1.674817 GCGAGAAAGATGACGGGGAAA 60.675 52.381 0.00 0.00 0.00 3.13
1201 1237 3.985019 TCAGGAACGGCATTTTACCTA 57.015 42.857 0.00 0.00 0.00 3.08
1202 1238 2.871096 TCAGGAACGGCATTTTACCT 57.129 45.000 0.00 0.00 0.00 3.08
1235 1271 4.077822 AGAAATCTCCCAGAAACAAGCAG 58.922 43.478 0.00 0.00 0.00 4.24
1246 1282 2.237893 GGAAACCCGTAGAAATCTCCCA 59.762 50.000 0.00 0.00 0.00 4.37
1309 1353 3.630769 GGGGACGAGAAAAACAGAAAACT 59.369 43.478 0.00 0.00 0.00 2.66
1312 1356 3.284793 TGGGGACGAGAAAAACAGAAA 57.715 42.857 0.00 0.00 0.00 2.52
1330 1374 0.883833 ACTGCCGCAGAAAAAGATGG 59.116 50.000 27.12 0.00 35.18 3.51
1370 1414 3.311322 GTGAACCACGAAATGTTGACAGA 59.689 43.478 0.00 0.00 30.35 3.41
1395 1439 7.486802 TTTCTTGGTTAGTAGCAGTAACAAC 57.513 36.000 12.75 0.00 36.08 3.32
1396 1440 8.685838 ATTTTCTTGGTTAGTAGCAGTAACAA 57.314 30.769 12.75 2.99 36.08 2.83
1397 1441 8.685838 AATTTTCTTGGTTAGTAGCAGTAACA 57.314 30.769 12.75 0.00 36.08 2.41
1426 1473 3.189287 ACAGATGAATGCGTTCAAGAACC 59.811 43.478 24.39 11.54 46.67 3.62
1436 1483 6.215121 AGAGAAAGATCTACAGATGAATGCG 58.785 40.000 0.00 0.00 35.54 4.73
1472 1522 3.134081 CGAATCTAACCTGGCCTAAAGGA 59.866 47.826 14.41 1.34 38.27 3.36
1483 1534 4.042435 TGGGAAAAGGAACGAATCTAACCT 59.958 41.667 0.00 0.00 0.00 3.50
1532 1583 4.764823 ACTCGGAAAAAGGTTGCATATGAA 59.235 37.500 6.97 0.00 0.00 2.57
1659 1720 6.602406 GGATGTTGGAACTAGAGTGTAGTCTA 59.398 42.308 0.00 0.00 0.00 2.59
1660 1721 5.419471 GGATGTTGGAACTAGAGTGTAGTCT 59.581 44.000 0.00 0.00 0.00 3.24
1661 1722 5.185249 TGGATGTTGGAACTAGAGTGTAGTC 59.815 44.000 0.00 0.00 0.00 2.59
1730 1794 0.450583 ATGCGCTGCAAATCAGAGTG 59.549 50.000 9.73 0.00 45.72 3.51
1732 1796 1.003759 GAGATGCGCTGCAAATCAGAG 60.004 52.381 9.73 0.00 45.72 3.35
1739 1804 1.967494 TGCTTGAGATGCGCTGCAA 60.967 52.632 9.73 6.79 43.62 4.08
1774 1839 3.563808 TGAGTTTCTCGAACACCCATTTG 59.436 43.478 0.00 0.00 40.84 2.32
1783 1848 4.374399 TGGTACCTTTGAGTTTCTCGAAC 58.626 43.478 14.36 0.00 38.58 3.95
1792 1857 3.069729 GGCTATCGATGGTACCTTTGAGT 59.930 47.826 19.58 12.00 0.00 3.41
1804 1869 2.348998 GGGGCAGGGCTATCGATG 59.651 66.667 8.54 0.00 0.00 3.84
1811 1881 0.926220 AGAAATTAGGGGGCAGGGCT 60.926 55.000 0.00 0.00 0.00 5.19
1814 1884 0.926293 TGGAGAAATTAGGGGGCAGG 59.074 55.000 0.00 0.00 0.00 4.85
1819 1889 4.278310 ACGGAAATTGGAGAAATTAGGGG 58.722 43.478 0.00 0.00 37.51 4.79
1822 1892 7.023575 CACTGAACGGAAATTGGAGAAATTAG 58.976 38.462 0.00 0.00 37.51 1.73
1893 1963 1.654105 GATGTTGCTAAGACGACGTGG 59.346 52.381 4.58 0.00 0.00 4.94
1925 1995 1.438651 GTTGCTAACAGCGATGGACA 58.561 50.000 5.32 0.00 46.26 4.02
1996 2067 6.257849 TGAAGAAAGGCTATGTGCGTATTAAG 59.742 38.462 0.00 0.00 44.05 1.85
2041 2124 2.436173 ACTTGGATTAGAGCTACAGGGC 59.564 50.000 0.00 0.00 0.00 5.19
2051 2134 8.191446 CAGATCGAAAAGAGTACTTGGATTAGA 58.809 37.037 0.00 0.00 36.39 2.10
2089 2172 4.784394 GCATCAGCGTCACTCATTGTATTG 60.784 45.833 0.00 0.00 0.00 1.90
2179 2262 1.356124 CCCCCTGCTCTGCACTATAT 58.644 55.000 0.00 0.00 33.79 0.86
2180 2263 2.840199 CCCCCTGCTCTGCACTATA 58.160 57.895 0.00 0.00 33.79 1.31
2341 2424 8.730680 TGCTTAGAAGAAAACATTGATTAGACC 58.269 33.333 0.00 0.00 0.00 3.85
2426 2509 1.138036 CACGTGAGCGGTCGGATTA 59.862 57.895 10.90 0.00 43.45 1.75
2504 2587 6.522054 ACATCTTATAATAGTGAACGGTGGG 58.478 40.000 0.00 0.00 0.00 4.61
2507 2590 8.889717 CCAAAACATCTTATAATAGTGAACGGT 58.110 33.333 0.00 0.00 0.00 4.83
2571 2654 3.952535 AGCGTGTTTGTTCACTCATTTC 58.047 40.909 0.00 0.00 36.33 2.17
2590 2673 6.750501 TCGGATGTATATAGACGCATTTTAGC 59.249 38.462 0.00 0.00 0.00 3.09
2605 2688 9.893634 TTAACCTTTTTCTGAATCGGATGTATA 57.106 29.630 0.00 0.00 0.00 1.47
2606 2689 8.801882 TTAACCTTTTTCTGAATCGGATGTAT 57.198 30.769 0.00 0.00 0.00 2.29
2607 2690 8.624367 TTTAACCTTTTTCTGAATCGGATGTA 57.376 30.769 0.00 0.00 0.00 2.29
2608 2691 7.519032 TTTAACCTTTTTCTGAATCGGATGT 57.481 32.000 0.00 0.00 0.00 3.06
2609 2692 7.060633 CGTTTTAACCTTTTTCTGAATCGGATG 59.939 37.037 0.00 0.00 0.00 3.51
2610 2693 7.081976 CGTTTTAACCTTTTTCTGAATCGGAT 58.918 34.615 0.00 0.00 0.00 4.18
2611 2694 6.038492 ACGTTTTAACCTTTTTCTGAATCGGA 59.962 34.615 7.01 0.00 0.00 4.55
2612 2695 6.203647 ACGTTTTAACCTTTTTCTGAATCGG 58.796 36.000 0.00 0.00 0.00 4.18
2613 2696 7.130269 AGACGTTTTAACCTTTTTCTGAATCG 58.870 34.615 0.00 0.00 0.00 3.34
2614 2697 8.743099 CAAGACGTTTTAACCTTTTTCTGAATC 58.257 33.333 0.00 0.00 0.00 2.52
2615 2698 8.248253 ACAAGACGTTTTAACCTTTTTCTGAAT 58.752 29.630 0.00 0.00 0.00 2.57
2616 2699 7.595604 ACAAGACGTTTTAACCTTTTTCTGAA 58.404 30.769 0.00 0.00 0.00 3.02
2617 2700 7.148355 ACAAGACGTTTTAACCTTTTTCTGA 57.852 32.000 0.00 0.00 0.00 3.27
2618 2701 8.898983 TTACAAGACGTTTTAACCTTTTTCTG 57.101 30.769 0.00 0.00 0.00 3.02
2619 2702 7.699391 GCTTACAAGACGTTTTAACCTTTTTCT 59.301 33.333 0.00 0.00 0.00 2.52
2620 2703 7.699391 AGCTTACAAGACGTTTTAACCTTTTTC 59.301 33.333 0.00 0.00 0.00 2.29
2621 2704 7.541162 AGCTTACAAGACGTTTTAACCTTTTT 58.459 30.769 0.00 0.00 0.00 1.94
2622 2705 7.092137 AGCTTACAAGACGTTTTAACCTTTT 57.908 32.000 0.00 0.00 0.00 2.27
2623 2706 6.688637 AGCTTACAAGACGTTTTAACCTTT 57.311 33.333 0.00 0.00 0.00 3.11
2624 2707 7.974482 ATAGCTTACAAGACGTTTTAACCTT 57.026 32.000 0.00 0.00 0.00 3.50
2630 2713 9.257651 GGATGTATATAGCTTACAAGACGTTTT 57.742 33.333 0.00 0.00 33.55 2.43
2631 2714 7.594015 CGGATGTATATAGCTTACAAGACGTTT 59.406 37.037 0.00 0.00 33.55 3.60
2632 2715 7.040892 TCGGATGTATATAGCTTACAAGACGTT 60.041 37.037 0.00 0.00 33.55 3.99
2633 2716 6.429078 TCGGATGTATATAGCTTACAAGACGT 59.571 38.462 0.00 0.00 33.55 4.34
2634 2717 6.839033 TCGGATGTATATAGCTTACAAGACG 58.161 40.000 0.00 2.08 33.55 4.18
2635 2718 9.291664 GAATCGGATGTATATAGCTTACAAGAC 57.708 37.037 0.00 0.00 33.55 3.01
2636 2719 9.020731 TGAATCGGATGTATATAGCTTACAAGA 57.979 33.333 0.00 0.00 33.55 3.02
2637 2720 9.295214 CTGAATCGGATGTATATAGCTTACAAG 57.705 37.037 0.00 0.00 33.55 3.16
2638 2721 9.020731 TCTGAATCGGATGTATATAGCTTACAA 57.979 33.333 0.00 0.00 33.55 2.41
2639 2722 8.575649 TCTGAATCGGATGTATATAGCTTACA 57.424 34.615 0.00 0.00 34.29 2.41
2640 2723 9.856488 TTTCTGAATCGGATGTATATAGCTTAC 57.144 33.333 0.00 0.00 0.00 2.34
2642 2725 9.778741 TTTTTCTGAATCGGATGTATATAGCTT 57.221 29.630 0.00 0.00 0.00 3.74
2668 2751 7.014422 CGGAGGGAGTATAAGATGTTCTAACTT 59.986 40.741 0.00 0.00 0.00 2.66
2686 2769 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2687 2770 3.681593 CAAGTAATTTGGAACGGAGGGA 58.318 45.455 0.00 0.00 32.95 4.20
2698 2781 5.047092 AGACAAATGGAGGCCAAGTAATTTG 60.047 40.000 19.40 19.40 36.95 2.32
2699 2782 5.086621 AGACAAATGGAGGCCAAGTAATTT 58.913 37.500 5.01 0.62 36.95 1.82
2700 2783 4.677182 AGACAAATGGAGGCCAAGTAATT 58.323 39.130 5.01 0.00 36.95 1.40
2701 2784 4.322057 AGACAAATGGAGGCCAAGTAAT 57.678 40.909 5.01 0.00 36.95 1.89
2702 2785 3.806949 AGACAAATGGAGGCCAAGTAA 57.193 42.857 5.01 0.00 36.95 2.24
2703 2786 4.101114 TCTAGACAAATGGAGGCCAAGTA 58.899 43.478 5.01 0.00 36.95 2.24
2704 2787 2.912956 TCTAGACAAATGGAGGCCAAGT 59.087 45.455 5.01 0.00 36.95 3.16
2705 2788 3.634397 TCTAGACAAATGGAGGCCAAG 57.366 47.619 5.01 0.00 36.95 3.61
2706 2789 5.456619 CCATATCTAGACAAATGGAGGCCAA 60.457 44.000 19.23 0.00 41.20 4.52
2707 2790 4.042062 CCATATCTAGACAAATGGAGGCCA 59.958 45.833 19.23 0.00 41.20 5.36
2708 2791 4.287067 TCCATATCTAGACAAATGGAGGCC 59.713 45.833 21.28 0.00 42.25 5.19
2709 2792 5.489792 TCCATATCTAGACAAATGGAGGC 57.510 43.478 21.28 0.00 42.25 4.70
2760 2843 9.088512 GACTTTCATTTGTCTAGATACGAATGT 57.911 33.333 17.75 14.18 45.54 2.71
2761 2844 9.087424 TGACTTTCATTTGTCTAGATACGAATG 57.913 33.333 14.40 14.40 46.23 2.67
2762 2845 9.653287 TTGACTTTCATTTGTCTAGATACGAAT 57.347 29.630 0.00 0.00 34.42 3.34
2763 2846 9.140286 CTTGACTTTCATTTGTCTAGATACGAA 57.860 33.333 0.00 0.00 37.94 3.85
2764 2847 8.304596 ACTTGACTTTCATTTGTCTAGATACGA 58.695 33.333 10.42 0.00 38.64 3.43
2765 2848 8.467402 ACTTGACTTTCATTTGTCTAGATACG 57.533 34.615 10.42 0.00 38.64 3.06
2772 2855 8.912988 TCCAAATTACTTGACTTTCATTTGTCT 58.087 29.630 0.00 0.00 37.17 3.41
2773 2856 9.528018 TTCCAAATTACTTGACTTTCATTTGTC 57.472 29.630 0.00 0.00 37.17 3.18
2774 2857 9.313118 GTTCCAAATTACTTGACTTTCATTTGT 57.687 29.630 0.00 0.00 37.17 2.83
2775 2858 8.479280 CGTTCCAAATTACTTGACTTTCATTTG 58.521 33.333 0.00 0.00 37.17 2.32
2776 2859 7.651704 CCGTTCCAAATTACTTGACTTTCATTT 59.348 33.333 0.00 0.00 37.17 2.32
2777 2860 7.013846 TCCGTTCCAAATTACTTGACTTTCATT 59.986 33.333 0.00 0.00 37.17 2.57
2778 2861 6.488683 TCCGTTCCAAATTACTTGACTTTCAT 59.511 34.615 0.00 0.00 37.17 2.57
2779 2862 5.823570 TCCGTTCCAAATTACTTGACTTTCA 59.176 36.000 0.00 0.00 37.17 2.69
2780 2863 6.308371 TCCGTTCCAAATTACTTGACTTTC 57.692 37.500 0.00 0.00 37.17 2.62
2781 2864 5.240844 CCTCCGTTCCAAATTACTTGACTTT 59.759 40.000 0.00 0.00 37.17 2.66
2782 2865 4.760204 CCTCCGTTCCAAATTACTTGACTT 59.240 41.667 0.00 0.00 37.17 3.01
2783 2866 4.324267 CCTCCGTTCCAAATTACTTGACT 58.676 43.478 0.00 0.00 37.17 3.41
2784 2867 3.439129 CCCTCCGTTCCAAATTACTTGAC 59.561 47.826 0.00 0.00 37.17 3.18
2785 2868 3.328343 TCCCTCCGTTCCAAATTACTTGA 59.672 43.478 0.00 0.00 37.17 3.02
2786 2869 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
2787 2870 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
2788 2871 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2789 2872 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2790 2873 5.703730 ATTACTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
2791 2874 4.586306 ATTACTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
2792 2875 5.906772 ATATTACTCCCTCCGTTCCAAAT 57.093 39.130 0.00 0.00 0.00 2.32
2793 2876 5.190132 TCAATATTACTCCCTCCGTTCCAAA 59.810 40.000 0.00 0.00 0.00 3.28
2794 2877 4.717778 TCAATATTACTCCCTCCGTTCCAA 59.282 41.667 0.00 0.00 0.00 3.53
2795 2878 4.291792 TCAATATTACTCCCTCCGTTCCA 58.708 43.478 0.00 0.00 0.00 3.53
2796 2879 4.950205 TCAATATTACTCCCTCCGTTCC 57.050 45.455 0.00 0.00 0.00 3.62
2797 2880 4.743644 CGTTCAATATTACTCCCTCCGTTC 59.256 45.833 0.00 0.00 0.00 3.95
2798 2881 4.442472 CCGTTCAATATTACTCCCTCCGTT 60.442 45.833 0.00 0.00 0.00 4.44
2799 2882 3.069158 CCGTTCAATATTACTCCCTCCGT 59.931 47.826 0.00 0.00 0.00 4.69
2800 2883 3.319972 TCCGTTCAATATTACTCCCTCCG 59.680 47.826 0.00 0.00 0.00 4.63
2801 2884 4.262506 CCTCCGTTCAATATTACTCCCTCC 60.263 50.000 0.00 0.00 0.00 4.30
2802 2885 4.587684 TCCTCCGTTCAATATTACTCCCTC 59.412 45.833 0.00 0.00 0.00 4.30
2803 2886 4.553678 TCCTCCGTTCAATATTACTCCCT 58.446 43.478 0.00 0.00 0.00 4.20
2804 2887 4.950205 TCCTCCGTTCAATATTACTCCC 57.050 45.455 0.00 0.00 0.00 4.30
2805 2888 5.915175 ACTTCCTCCGTTCAATATTACTCC 58.085 41.667 0.00 0.00 0.00 3.85
2806 2889 7.714703 ACTACTTCCTCCGTTCAATATTACTC 58.285 38.462 0.00 0.00 0.00 2.59
2807 2890 7.657023 ACTACTTCCTCCGTTCAATATTACT 57.343 36.000 0.00 0.00 0.00 2.24
2808 2891 8.601476 CAAACTACTTCCTCCGTTCAATATTAC 58.399 37.037 0.00 0.00 0.00 1.89
2809 2892 8.316214 ACAAACTACTTCCTCCGTTCAATATTA 58.684 33.333 0.00 0.00 0.00 0.98
2810 2893 7.119262 CACAAACTACTTCCTCCGTTCAATATT 59.881 37.037 0.00 0.00 0.00 1.28
2836 2919 6.630676 TTGCGAGCATTCACATTTTATTTC 57.369 33.333 0.00 0.00 0.00 2.17
2884 2967 0.322816 GAAGATGGCCTGCAAGTGGA 60.323 55.000 3.32 0.00 0.00 4.02
3395 3596 1.899814 AGGTTGCAGACTACATTCCGA 59.100 47.619 0.00 0.00 0.00 4.55
3487 3697 4.175489 GCTACTCGAGCGTCGCCA 62.175 66.667 14.86 0.00 42.62 5.69
3966 4197 3.785859 GAGGCCGCCCAGACATGA 61.786 66.667 5.55 0.00 0.00 3.07
4401 5475 3.288309 ACCTCCTCCCAGGTGAGT 58.712 61.111 0.00 0.00 45.80 3.41
4590 5779 2.124570 GTGGCGATGGATGGCAGT 60.125 61.111 0.00 0.00 43.05 4.40
4779 6039 2.761195 CGAGATCGTCGCACTCCCA 61.761 63.158 11.00 0.00 43.03 4.37
4793 6053 2.184322 GCGCTGATGGGAACGAGA 59.816 61.111 0.00 0.00 0.00 4.04
4864 6124 3.423154 CCAAGACGGAAGCGGTGC 61.423 66.667 0.00 0.00 36.56 5.01
4885 6145 4.047059 CGACACGTGGCGGGTAGT 62.047 66.667 35.70 2.75 46.20 2.73
5099 7032 2.038690 TCGCAGACTTTGAGGTCGT 58.961 52.632 0.00 0.00 40.76 4.34
5137 7074 0.252284 AGAATGACGAGGAGGGGTGT 60.252 55.000 0.00 0.00 0.00 4.16
5215 7345 2.358737 GGTGACACCCTGCCTTCG 60.359 66.667 14.16 0.00 30.04 3.79
5321 7451 1.683943 GAGTGCATGTGTATGGCCAT 58.316 50.000 24.45 24.45 34.79 4.40
5393 7690 2.048597 GACACCATCCGCACGTCA 60.049 61.111 0.00 0.00 0.00 4.35
5611 8184 4.105697 CCCTAAGACTAATGGGCCCATTAA 59.894 45.833 42.53 31.41 44.95 1.40
5852 8430 0.034670 AAGGGGTCTCAGAGCAATGC 60.035 55.000 6.14 0.00 0.00 3.56
5887 8465 8.477256 TGAAAATGGGAAATTCATATGAAGGAC 58.523 33.333 21.97 14.58 37.48 3.85
5923 8501 5.316167 ACTACAAGACTGGAATTGCAATCA 58.684 37.500 13.38 6.52 0.00 2.57
5924 8502 5.886960 ACTACAAGACTGGAATTGCAATC 57.113 39.130 13.38 0.00 0.00 2.67
5926 8504 7.390823 TGTATACTACAAGACTGGAATTGCAA 58.609 34.615 0.00 0.00 35.38 4.08
5959 8537 8.898761 AGAATGTTGTGTGTAAAGTGTAAATGA 58.101 29.630 0.00 0.00 0.00 2.57
5979 8557 9.193806 AGCAAAGTTCAAATATATGGAGAATGT 57.806 29.630 0.00 0.00 0.00 2.71
6006 8584 1.154525 CAGCAGTTTCGAGCGCTTG 60.155 57.895 19.15 19.15 35.48 4.01
6046 8624 6.587206 TGAGAATGCCACAAACATATTGAA 57.413 33.333 0.00 0.00 0.00 2.69
6084 8662 7.512992 AGAATTGCATAGACCTAATAGCAACT 58.487 34.615 13.27 6.52 43.64 3.16
6090 8668 9.535170 ACTAGCTAGAATTGCATAGACCTAATA 57.465 33.333 27.45 0.00 0.00 0.98
6168 8746 7.012799 CCTGAATAAGAAAGAAATAGGGTCAGC 59.987 40.741 0.00 0.00 0.00 4.26
6393 8971 3.438017 GATCGCCGAGAGCTTGCCT 62.438 63.158 0.00 0.00 40.39 4.75
6574 9152 1.680735 AGACGGATCATCAGACTGAGC 59.319 52.381 11.52 0.59 0.00 4.26
6576 9154 2.690497 GGAAGACGGATCATCAGACTGA 59.310 50.000 7.80 7.80 0.00 3.41
6577 9155 2.692557 AGGAAGACGGATCATCAGACTG 59.307 50.000 0.00 0.00 0.00 3.51
6578 9156 3.025322 AGGAAGACGGATCATCAGACT 57.975 47.619 0.00 0.00 0.00 3.24
6597 9176 8.003629 TCATGGAGACTATGGATAGGATCATAG 58.996 40.741 8.31 8.31 44.90 2.23
6601 9180 7.469870 CGAATCATGGAGACTATGGATAGGATC 60.470 44.444 0.00 0.00 34.69 3.36
6602 9181 6.323482 CGAATCATGGAGACTATGGATAGGAT 59.677 42.308 0.00 0.00 34.69 3.24
6603 9182 5.654209 CGAATCATGGAGACTATGGATAGGA 59.346 44.000 0.00 0.00 34.69 2.94
6604 9183 5.420421 ACGAATCATGGAGACTATGGATAGG 59.580 44.000 0.00 0.00 34.69 2.57
6605 9184 6.328714 CACGAATCATGGAGACTATGGATAG 58.671 44.000 0.00 0.00 36.46 2.08
6606 9185 5.336770 GCACGAATCATGGAGACTATGGATA 60.337 44.000 0.00 0.00 0.00 2.59
6607 9186 4.562347 GCACGAATCATGGAGACTATGGAT 60.562 45.833 0.00 0.00 0.00 3.41
6608 9187 3.243873 GCACGAATCATGGAGACTATGGA 60.244 47.826 0.00 0.00 0.00 3.41
6616 9195 2.569059 AGAATGGCACGAATCATGGAG 58.431 47.619 0.00 0.00 0.00 3.86
6649 9228 0.401738 CCTCAGGAACCACACACCAT 59.598 55.000 0.00 0.00 0.00 3.55
6652 9231 0.600255 CGTCCTCAGGAACCACACAC 60.600 60.000 0.00 0.00 31.38 3.82
6653 9232 1.046472 ACGTCCTCAGGAACCACACA 61.046 55.000 0.00 0.00 31.38 3.72
6669 9250 2.027192 ACCAATCTAATCACCAGCACGT 60.027 45.455 0.00 0.00 0.00 4.49
6683 9264 1.528824 CCGATCAGCCCACCAATCT 59.471 57.895 0.00 0.00 0.00 2.40
6684 9265 2.189499 GCCGATCAGCCCACCAATC 61.189 63.158 0.00 0.00 0.00 2.67
6692 9273 0.104855 TACAGACATGCCGATCAGCC 59.895 55.000 0.00 0.00 0.00 4.85
6723 9307 2.642807 CACCACCCTTTCCTTAGGAGAA 59.357 50.000 0.00 0.00 37.50 2.87
6725 9309 1.985895 ACACCACCCTTTCCTTAGGAG 59.014 52.381 0.00 0.00 37.50 3.69
6726 9310 1.982958 GACACCACCCTTTCCTTAGGA 59.017 52.381 0.00 0.00 37.50 2.94
6727 9311 1.004394 GGACACCACCCTTTCCTTAGG 59.996 57.143 0.00 0.00 34.92 2.69
6728 9312 1.004394 GGGACACCACCCTTTCCTTAG 59.996 57.143 0.00 0.00 45.90 2.18
6729 9313 1.069775 GGGACACCACCCTTTCCTTA 58.930 55.000 0.00 0.00 45.90 2.69
6730 9314 1.851267 GGGACACCACCCTTTCCTT 59.149 57.895 0.00 0.00 45.90 3.36
6731 9315 3.589139 GGGACACCACCCTTTCCT 58.411 61.111 0.00 0.00 45.90 3.36
6765 9384 0.675633 ACAAAGCCAGAACACATGCC 59.324 50.000 0.00 0.00 0.00 4.40
6792 9411 1.755393 AACACAGGTCCCCGACAGAC 61.755 60.000 0.00 0.00 33.68 3.51
6904 9523 7.006476 GCATATATGTCATTGTTTTATGTCGCG 59.994 37.037 14.14 0.00 0.00 5.87
6906 9525 9.662545 TTGCATATATGTCATTGTTTTATGTCG 57.337 29.630 14.14 0.00 0.00 4.35
6914 9533 9.872721 TGATGTTTTTGCATATATGTCATTGTT 57.127 25.926 14.14 0.00 0.00 2.83
6973 9680 9.449719 TTGAGTAGTATCTTTCTTTTTCATCCC 57.550 33.333 0.00 0.00 0.00 3.85
6984 9712 6.309251 GCTGTGTGAGTTGAGTAGTATCTTTC 59.691 42.308 0.00 0.00 0.00 2.62
6990 9718 3.188667 CGAGCTGTGTGAGTTGAGTAGTA 59.811 47.826 0.00 0.00 0.00 1.82
6991 9719 2.030717 CGAGCTGTGTGAGTTGAGTAGT 60.031 50.000 0.00 0.00 0.00 2.73
6992 9720 2.590073 CGAGCTGTGTGAGTTGAGTAG 58.410 52.381 0.00 0.00 0.00 2.57
7068 9797 3.289836 CCATGATCCAGTACATTGGCAA 58.710 45.455 0.68 0.68 38.16 4.52
7079 9808 7.226441 TCCATACAAAGAATACCATGATCCAG 58.774 38.462 0.00 0.00 0.00 3.86
7087 9816 6.485313 CCGCTTAATCCATACAAAGAATACCA 59.515 38.462 0.00 0.00 0.00 3.25
7090 9819 6.058833 TGCCGCTTAATCCATACAAAGAATA 58.941 36.000 0.00 0.00 0.00 1.75
7102 9831 0.738975 GGAAACCTGCCGCTTAATCC 59.261 55.000 0.00 0.00 0.00 3.01
7163 9894 6.071984 TCCAAGATTAAAAGCAACTGGGTAA 58.928 36.000 0.00 0.00 0.00 2.85
7164 9895 5.636123 TCCAAGATTAAAAGCAACTGGGTA 58.364 37.500 0.00 0.00 0.00 3.69
7165 9896 4.479158 TCCAAGATTAAAAGCAACTGGGT 58.521 39.130 0.00 0.00 0.00 4.51
7166 9897 5.394553 GGATCCAAGATTAAAAGCAACTGGG 60.395 44.000 6.95 0.00 0.00 4.45
7167 9898 5.394553 GGGATCCAAGATTAAAAGCAACTGG 60.395 44.000 15.23 0.00 0.00 4.00
7168 9899 5.420104 AGGGATCCAAGATTAAAAGCAACTG 59.580 40.000 15.23 0.00 0.00 3.16
7169 9900 5.420104 CAGGGATCCAAGATTAAAAGCAACT 59.580 40.000 15.23 0.00 0.00 3.16
7212 9943 7.324856 CAGAAACTCGTAGCACACTATATGATC 59.675 40.741 0.00 0.00 0.00 2.92
7222 9953 0.666274 CGGCAGAAACTCGTAGCACA 60.666 55.000 0.00 0.00 0.00 4.57
7223 9954 0.388134 TCGGCAGAAACTCGTAGCAC 60.388 55.000 0.00 0.00 0.00 4.40
7239 9970 8.131100 AGATATGTTTAGCATGTGATTTTTCGG 58.869 33.333 0.00 0.00 38.47 4.30
7266 9997 2.496470 CACCACTGGTAGGTCCTAGTTC 59.504 54.545 0.00 0.00 37.23 3.01
7275 10006 2.536761 TTTCGTTCACCACTGGTAGG 57.463 50.000 0.00 0.00 32.11 3.18
7279 10010 2.504367 AGGATTTTCGTTCACCACTGG 58.496 47.619 0.00 0.00 0.00 4.00
7297 10028 6.542735 GCCCTTACAAGAAATTCCTTAGTAGG 59.457 42.308 0.00 0.00 43.46 3.18
7320 10051 6.718454 GGAGGGGGTATTAATTAAAACTAGCC 59.282 42.308 13.60 13.60 0.00 3.93
7324 10055 6.331577 ACGGAGGGGGTATTAATTAAAACT 57.668 37.500 1.21 0.00 0.00 2.66
7333 10064 0.342665 TTGGGACGGAGGGGGTATTA 59.657 55.000 0.00 0.00 0.00 0.98
7338 10069 0.626916 TTATTTTGGGACGGAGGGGG 59.373 55.000 0.00 0.00 0.00 5.40
7339 10070 1.283905 ACTTATTTTGGGACGGAGGGG 59.716 52.381 0.00 0.00 0.00 4.79
7340 10071 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
7384 10115 5.702209 GGGACGGAAGAAGTACAATTTTGTA 59.298 40.000 0.00 0.00 42.35 2.41
7385 10116 4.517832 GGGACGGAAGAAGTACAATTTTGT 59.482 41.667 1.08 1.08 44.86 2.83
7386 10117 4.517453 TGGGACGGAAGAAGTACAATTTTG 59.483 41.667 0.00 0.00 0.00 2.44
7387 10118 4.721132 TGGGACGGAAGAAGTACAATTTT 58.279 39.130 0.00 0.00 0.00 1.82
7388 10119 4.360951 TGGGACGGAAGAAGTACAATTT 57.639 40.909 0.00 0.00 0.00 1.82
7389 10120 4.360951 TTGGGACGGAAGAAGTACAATT 57.639 40.909 0.00 0.00 0.00 2.32
7390 10121 4.360951 TTTGGGACGGAAGAAGTACAAT 57.639 40.909 0.00 0.00 0.00 2.71
7391 10122 3.842007 TTTGGGACGGAAGAAGTACAA 57.158 42.857 0.00 0.00 0.00 2.41
7392 10123 3.842007 TTTTGGGACGGAAGAAGTACA 57.158 42.857 0.00 0.00 0.00 2.90
7393 10124 5.001874 AGAATTTTGGGACGGAAGAAGTAC 58.998 41.667 0.00 0.00 0.00 2.73
7394 10125 5.237236 AGAATTTTGGGACGGAAGAAGTA 57.763 39.130 0.00 0.00 0.00 2.24
7395 10126 4.100279 AGAATTTTGGGACGGAAGAAGT 57.900 40.909 0.00 0.00 0.00 3.01
7396 10127 4.278419 ACAAGAATTTTGGGACGGAAGAAG 59.722 41.667 0.00 0.00 0.00 2.85
7397 10128 4.211920 ACAAGAATTTTGGGACGGAAGAA 58.788 39.130 0.00 0.00 0.00 2.52
7398 10129 3.818773 GACAAGAATTTTGGGACGGAAGA 59.181 43.478 0.00 0.00 0.00 2.87
7399 10130 3.821033 AGACAAGAATTTTGGGACGGAAG 59.179 43.478 0.00 0.00 0.00 3.46
7400 10131 3.827722 AGACAAGAATTTTGGGACGGAA 58.172 40.909 0.00 0.00 0.00 4.30
7401 10132 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
7402 10133 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
7403 10134 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
7404 10135 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
7405 10136 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
7406 10137 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
7447 10178 9.322776 CGTCTCAAAATTCTTGTCTTAGATTTG 57.677 33.333 0.00 0.00 30.65 2.32
7448 10179 8.507249 CCGTCTCAAAATTCTTGTCTTAGATTT 58.493 33.333 0.00 0.00 0.00 2.17
7449 10180 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
7450 10181 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
7451 10182 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
7452 10183 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
7453 10184 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
7454 10185 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
7455 10186 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
7456 10187 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
7457 10188 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
7458 10189 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
7459 10190 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
7460 10191 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
7461 10192 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
7462 10193 3.838903 AGTACTCCCTCCGTCTCAAAATT 59.161 43.478 0.00 0.00 0.00 1.82
7463 10194 3.442076 AGTACTCCCTCCGTCTCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
7464 10195 2.885616 AGTACTCCCTCCGTCTCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
7465 10196 2.599408 AGTACTCCCTCCGTCTCAAA 57.401 50.000 0.00 0.00 0.00 2.69
7466 10197 3.618351 CTTAGTACTCCCTCCGTCTCAA 58.382 50.000 0.00 0.00 0.00 3.02
7467 10198 2.092538 CCTTAGTACTCCCTCCGTCTCA 60.093 54.545 0.00 0.00 0.00 3.27
7468 10199 2.092484 ACCTTAGTACTCCCTCCGTCTC 60.092 54.545 0.00 0.00 0.00 3.36
7469 10200 1.921748 ACCTTAGTACTCCCTCCGTCT 59.078 52.381 0.00 0.00 0.00 4.18
7470 10201 2.433662 ACCTTAGTACTCCCTCCGTC 57.566 55.000 0.00 0.00 0.00 4.79
7471 10202 2.915657 AACCTTAGTACTCCCTCCGT 57.084 50.000 0.00 0.00 0.00 4.69
7472 10203 4.337836 GTCTTAACCTTAGTACTCCCTCCG 59.662 50.000 0.00 0.00 0.00 4.63
7473 10204 5.126869 GTGTCTTAACCTTAGTACTCCCTCC 59.873 48.000 0.00 0.00 0.00 4.30
7474 10205 5.951148 AGTGTCTTAACCTTAGTACTCCCTC 59.049 44.000 0.00 0.00 0.00 4.30
7475 10206 5.901598 AGTGTCTTAACCTTAGTACTCCCT 58.098 41.667 0.00 0.00 0.00 4.20
7476 10207 6.602410 AAGTGTCTTAACCTTAGTACTCCC 57.398 41.667 0.00 0.00 0.00 4.30
7481 10212 9.729281 CCCAAAATAAGTGTCTTAACCTTAGTA 57.271 33.333 0.00 0.00 0.00 1.82
7482 10213 8.442374 TCCCAAAATAAGTGTCTTAACCTTAGT 58.558 33.333 0.00 0.00 0.00 2.24
7483 10214 8.727910 GTCCCAAAATAAGTGTCTTAACCTTAG 58.272 37.037 0.00 0.00 0.00 2.18
7484 10215 7.388500 CGTCCCAAAATAAGTGTCTTAACCTTA 59.612 37.037 0.00 0.00 0.00 2.69
7485 10216 6.206048 CGTCCCAAAATAAGTGTCTTAACCTT 59.794 38.462 0.00 0.00 0.00 3.50
7486 10217 5.704053 CGTCCCAAAATAAGTGTCTTAACCT 59.296 40.000 0.00 0.00 0.00 3.50
7487 10218 5.106436 CCGTCCCAAAATAAGTGTCTTAACC 60.106 44.000 0.00 0.00 0.00 2.85
7488 10219 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
7489 10220 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
7490 10221 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
7491 10222 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
7492 10223 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
7493 10224 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
7494 10225 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
7495 10226 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
7496 10227 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
7497 10228 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
7498 10229 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
7499 10230 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
7500 10231 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
7501 10232 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
7502 10233 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
7503 10234 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
7504 10235 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
7505 10236 3.735720 ATATACTACTCCCTCCGTCCC 57.264 52.381 0.00 0.00 0.00 4.46
7506 10237 5.593502 CCATAATATACTACTCCCTCCGTCC 59.406 48.000 0.00 0.00 0.00 4.79
7507 10238 5.067544 GCCATAATATACTACTCCCTCCGTC 59.932 48.000 0.00 0.00 0.00 4.79
7508 10239 4.954826 GCCATAATATACTACTCCCTCCGT 59.045 45.833 0.00 0.00 0.00 4.69
7509 10240 4.954202 TGCCATAATATACTACTCCCTCCG 59.046 45.833 0.00 0.00 0.00 4.63
7510 10241 7.439108 AATGCCATAATATACTACTCCCTCC 57.561 40.000 0.00 0.00 0.00 4.30
7511 10242 7.770897 CCAAATGCCATAATATACTACTCCCTC 59.229 40.741 0.00 0.00 0.00 4.30
7512 10243 7.311929 CCCAAATGCCATAATATACTACTCCCT 60.312 40.741 0.00 0.00 0.00 4.20
7513 10244 6.828785 CCCAAATGCCATAATATACTACTCCC 59.171 42.308 0.00 0.00 0.00 4.30
7514 10245 6.318900 GCCCAAATGCCATAATATACTACTCC 59.681 42.308 0.00 0.00 0.00 3.85
7515 10246 7.321745 GCCCAAATGCCATAATATACTACTC 57.678 40.000 0.00 0.00 0.00 2.59
7530 10261 1.549203 TGAAGAGAAGGCCCAAATGC 58.451 50.000 0.00 0.00 0.00 3.56
7531 10262 3.359033 TCATGAAGAGAAGGCCCAAATG 58.641 45.455 0.00 0.00 0.00 2.32
7532 10263 3.744940 TCATGAAGAGAAGGCCCAAAT 57.255 42.857 0.00 0.00 0.00 2.32
7544 10275 3.894427 CCTAGGCTAAGAGCTCATGAAGA 59.106 47.826 17.77 0.00 41.99 2.87
7545 10276 3.640967 ACCTAGGCTAAGAGCTCATGAAG 59.359 47.826 17.77 8.27 41.99 3.02
7546 10277 3.639094 GACCTAGGCTAAGAGCTCATGAA 59.361 47.826 17.77 0.00 41.99 2.57
7547 10278 3.226777 GACCTAGGCTAAGAGCTCATGA 58.773 50.000 17.77 0.00 41.99 3.07
7548 10279 2.298729 GGACCTAGGCTAAGAGCTCATG 59.701 54.545 17.77 6.38 41.99 3.07
7549 10280 2.091055 TGGACCTAGGCTAAGAGCTCAT 60.091 50.000 17.77 6.59 41.99 2.90
7550 10281 1.288037 TGGACCTAGGCTAAGAGCTCA 59.712 52.381 17.77 0.00 41.99 4.26
7551 10282 2.074729 TGGACCTAGGCTAAGAGCTC 57.925 55.000 9.30 5.27 41.99 4.09
7552 10283 2.324541 CATGGACCTAGGCTAAGAGCT 58.675 52.381 9.30 0.00 41.99 4.09
7553 10284 1.270571 GCATGGACCTAGGCTAAGAGC 60.271 57.143 9.30 2.65 41.46 4.09
7554 10285 2.829741 GCATGGACCTAGGCTAAGAG 57.170 55.000 9.30 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.