Multiple sequence alignment - TraesCS4B01G248900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G248900 chr4B 100.000 2240 0 0 1 2240 514586446 514584207 0.000000e+00 4137.0
1 TraesCS4B01G248900 chr4D 90.200 1500 84 34 217 1700 418358950 418357498 0.000000e+00 1897.0
2 TraesCS4B01G248900 chr4D 83.008 359 18 16 1846 2192 418357417 418357090 3.640000e-73 285.0
3 TraesCS4B01G248900 chr4D 100.000 33 0 0 2208 2240 418357047 418357015 6.680000e-06 62.1
4 TraesCS4B01G248900 chr4A 89.479 979 76 16 484 1443 46560536 46561506 0.000000e+00 1212.0
5 TraesCS4B01G248900 chr4A 93.694 111 6 1 1706 1816 714751075 714750966 4.950000e-37 165.0
6 TraesCS4B01G248900 chr4A 90.164 61 6 0 181 241 46555299 46555359 1.840000e-11 80.5
7 TraesCS4B01G248900 chr4A 90.385 52 0 1 2140 2191 46562372 46562418 1.860000e-06 63.9
8 TraesCS4B01G248900 chr4A 100.000 33 0 0 2201 2233 46562452 46562484 6.680000e-06 62.1
9 TraesCS4B01G248900 chr7B 90.088 908 54 19 711 1595 469741918 469742812 0.000000e+00 1146.0
10 TraesCS4B01G248900 chr7B 84.848 396 25 10 318 705 469741314 469741682 1.260000e-97 366.0
11 TraesCS4B01G248900 chr7B 85.859 198 20 6 1844 2033 469742847 469743044 1.050000e-48 204.0
12 TraesCS4B01G248900 chr2A 90.052 191 18 1 1 190 459017193 459017003 1.720000e-61 246.0
13 TraesCS4B01G248900 chr2A 89.062 192 18 3 1 189 729555054 729555245 3.720000e-58 235.0
14 TraesCS4B01G248900 chr2D 89.529 191 18 2 1 189 130782676 130782486 7.990000e-60 241.0
15 TraesCS4B01G248900 chr2D 95.283 106 5 0 1704 1809 272263176 272263071 3.830000e-38 169.0
16 TraesCS4B01G248900 chr3D 89.474 190 19 1 1 189 21810753 21810942 2.870000e-59 239.0
17 TraesCS4B01G248900 chr3D 92.241 116 8 1 1707 1821 435646740 435646855 1.780000e-36 163.0
18 TraesCS4B01G248900 chr3B 89.474 190 18 2 2 189 4554773 4554584 2.870000e-59 239.0
19 TraesCS4B01G248900 chr5A 88.384 198 19 3 1 194 647359743 647359546 3.720000e-58 235.0
20 TraesCS4B01G248900 chr6A 89.005 191 18 3 2 189 80803188 80803378 1.340000e-57 233.0
21 TraesCS4B01G248900 chr1D 88.947 190 19 2 1 189 318585814 318585626 1.340000e-57 233.0
22 TraesCS4B01G248900 chr7D 88.482 191 20 2 1 190 421699060 421699249 1.730000e-56 230.0
23 TraesCS4B01G248900 chr5D 95.370 108 4 1 1710 1817 485374880 485374774 1.060000e-38 171.0
24 TraesCS4B01G248900 chr5B 97.030 101 3 0 1709 1809 666201992 666202092 1.060000e-38 171.0
25 TraesCS4B01G248900 chrUn 95.283 106 5 0 1710 1815 15375184 15375079 3.830000e-38 169.0
26 TraesCS4B01G248900 chrUn 93.694 111 6 1 1706 1816 271105613 271105722 4.950000e-37 165.0
27 TraesCS4B01G248900 chrUn 93.694 111 6 1 1706 1816 314057811 314057702 4.950000e-37 165.0
28 TraesCS4B01G248900 chr6B 93.694 111 5 2 1700 1809 182748460 182748569 4.950000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G248900 chr4B 514584207 514586446 2239 True 4137.000000 4137 100.000000 1 2240 1 chr4B.!!$R1 2239
1 TraesCS4B01G248900 chr4D 418357015 418358950 1935 True 748.033333 1897 91.069333 217 2240 3 chr4D.!!$R1 2023
2 TraesCS4B01G248900 chr4A 46560536 46562484 1948 False 446.000000 1212 93.288000 484 2233 3 chr4A.!!$F2 1749
3 TraesCS4B01G248900 chr7B 469741314 469743044 1730 False 572.000000 1146 86.931667 318 2033 3 chr7B.!!$F1 1715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.035725 TACCGGCTCAGTCTCTCGAA 60.036 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1806 2080 0.106708 TGCGCCATCCATCTACTTCC 59.893 55.0 4.18 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.347490 GCGCTTTCAGTGGGAGGA 59.653 61.111 0.00 0.00 0.00 3.71
18 19 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
19 20 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
20 21 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
21 22 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
22 23 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
23 24 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
24 25 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
37 38 3.690487 ACGTTCCCGTCAACAATGA 57.310 47.368 0.00 0.00 46.28 2.57
38 39 1.508632 ACGTTCCCGTCAACAATGAG 58.491 50.000 0.00 0.00 46.28 2.90
39 40 0.796312 CGTTCCCGTCAACAATGAGG 59.204 55.000 0.00 0.00 40.35 3.86
40 41 0.521735 GTTCCCGTCAACAATGAGGC 59.478 55.000 0.00 0.00 39.54 4.70
41 42 0.109532 TTCCCGTCAACAATGAGGCA 59.890 50.000 0.00 0.00 39.54 4.75
42 43 0.605319 TCCCGTCAACAATGAGGCAC 60.605 55.000 0.00 0.00 39.54 5.01
43 44 1.586154 CCCGTCAACAATGAGGCACC 61.586 60.000 0.00 0.00 39.54 5.01
44 45 0.606401 CCGTCAACAATGAGGCACCT 60.606 55.000 0.00 0.00 39.54 4.00
45 46 1.338674 CCGTCAACAATGAGGCACCTA 60.339 52.381 0.00 0.00 39.54 3.08
46 47 1.732259 CGTCAACAATGAGGCACCTAC 59.268 52.381 0.00 0.00 35.88 3.18
47 48 1.732259 GTCAACAATGAGGCACCTACG 59.268 52.381 0.00 0.00 35.88 3.51
48 49 0.447801 CAACAATGAGGCACCTACGC 59.552 55.000 0.00 0.00 0.00 4.42
49 50 0.324943 AACAATGAGGCACCTACGCT 59.675 50.000 0.00 0.00 0.00 5.07
50 51 0.391661 ACAATGAGGCACCTACGCTG 60.392 55.000 0.00 0.00 0.00 5.18
51 52 0.108186 CAATGAGGCACCTACGCTGA 60.108 55.000 0.00 0.00 0.00 4.26
52 53 0.108138 AATGAGGCACCTACGCTGAC 60.108 55.000 0.00 0.00 0.00 3.51
53 54 1.257750 ATGAGGCACCTACGCTGACA 61.258 55.000 0.00 0.00 0.00 3.58
54 55 1.257750 TGAGGCACCTACGCTGACAT 61.258 55.000 0.00 0.00 0.00 3.06
55 56 0.528684 GAGGCACCTACGCTGACATC 60.529 60.000 0.00 0.00 0.00 3.06
56 57 1.878522 GGCACCTACGCTGACATCG 60.879 63.158 0.00 0.00 0.00 3.84
57 58 1.153823 GCACCTACGCTGACATCGT 60.154 57.895 9.52 9.52 43.20 3.73
58 59 0.099968 GCACCTACGCTGACATCGTA 59.900 55.000 10.78 10.78 40.89 3.43
59 60 1.468565 GCACCTACGCTGACATCGTAA 60.469 52.381 12.16 0.00 41.16 3.18
60 61 2.871133 CACCTACGCTGACATCGTAAA 58.129 47.619 12.16 0.00 41.16 2.01
61 62 3.444916 CACCTACGCTGACATCGTAAAT 58.555 45.455 12.16 1.72 41.16 1.40
62 63 3.486108 CACCTACGCTGACATCGTAAATC 59.514 47.826 12.16 0.00 41.16 2.17
63 64 3.380637 ACCTACGCTGACATCGTAAATCT 59.619 43.478 12.16 0.00 41.16 2.40
64 65 3.975670 CCTACGCTGACATCGTAAATCTC 59.024 47.826 12.16 0.00 41.16 2.75
65 66 3.503827 ACGCTGACATCGTAAATCTCA 57.496 42.857 1.85 0.00 38.52 3.27
66 67 3.845178 ACGCTGACATCGTAAATCTCAA 58.155 40.909 1.85 0.00 38.52 3.02
67 68 3.859961 ACGCTGACATCGTAAATCTCAAG 59.140 43.478 1.85 0.00 38.52 3.02
68 69 4.105486 CGCTGACATCGTAAATCTCAAGA 58.895 43.478 0.00 0.00 0.00 3.02
69 70 4.742167 CGCTGACATCGTAAATCTCAAGAT 59.258 41.667 0.00 0.00 36.07 2.40
70 71 5.332130 CGCTGACATCGTAAATCTCAAGATG 60.332 44.000 2.63 2.63 42.95 2.90
71 72 5.750547 GCTGACATCGTAAATCTCAAGATGA 59.249 40.000 10.23 0.00 40.62 2.92
72 73 6.423302 GCTGACATCGTAAATCTCAAGATGAT 59.577 38.462 10.23 0.00 40.62 2.45
73 74 7.596621 GCTGACATCGTAAATCTCAAGATGATA 59.403 37.037 10.23 0.00 40.62 2.15
74 75 9.636879 CTGACATCGTAAATCTCAAGATGATAT 57.363 33.333 10.23 0.00 40.62 1.63
77 78 9.862371 ACATCGTAAATCTCAAGATGATATACC 57.138 33.333 10.23 0.00 40.62 2.73
78 79 9.014533 CATCGTAAATCTCAAGATGATATACCG 57.985 37.037 0.00 0.00 40.62 4.02
79 80 7.535997 TCGTAAATCTCAAGATGATATACCGG 58.464 38.462 0.00 0.00 34.49 5.28
80 81 6.253727 CGTAAATCTCAAGATGATATACCGGC 59.746 42.308 0.00 0.00 34.49 6.13
81 82 6.365970 AAATCTCAAGATGATATACCGGCT 57.634 37.500 0.00 0.00 34.49 5.52
82 83 5.590530 ATCTCAAGATGATATACCGGCTC 57.409 43.478 0.00 0.00 32.68 4.70
83 84 4.407365 TCTCAAGATGATATACCGGCTCA 58.593 43.478 0.00 0.00 0.00 4.26
84 85 4.460731 TCTCAAGATGATATACCGGCTCAG 59.539 45.833 0.00 0.00 0.00 3.35
85 86 4.152647 TCAAGATGATATACCGGCTCAGT 58.847 43.478 0.00 0.00 0.00 3.41
86 87 4.218635 TCAAGATGATATACCGGCTCAGTC 59.781 45.833 0.00 0.00 0.00 3.51
87 88 4.040936 AGATGATATACCGGCTCAGTCT 57.959 45.455 0.00 2.84 0.00 3.24
88 89 4.013728 AGATGATATACCGGCTCAGTCTC 58.986 47.826 0.00 0.00 0.00 3.36
89 90 3.510531 TGATATACCGGCTCAGTCTCT 57.489 47.619 0.00 0.00 0.00 3.10
90 91 3.413327 TGATATACCGGCTCAGTCTCTC 58.587 50.000 0.00 0.00 0.00 3.20
91 92 1.880271 TATACCGGCTCAGTCTCTCG 58.120 55.000 0.00 0.00 0.00 4.04
92 93 0.180642 ATACCGGCTCAGTCTCTCGA 59.819 55.000 0.00 0.00 0.00 4.04
93 94 0.035725 TACCGGCTCAGTCTCTCGAA 60.036 55.000 0.00 0.00 0.00 3.71
94 95 1.309499 ACCGGCTCAGTCTCTCGAAG 61.309 60.000 0.00 0.00 0.00 3.79
95 96 1.431440 CGGCTCAGTCTCTCGAAGG 59.569 63.158 0.00 0.00 0.00 3.46
96 97 1.309499 CGGCTCAGTCTCTCGAAGGT 61.309 60.000 0.00 0.00 0.00 3.50
97 98 0.172352 GGCTCAGTCTCTCGAAGGTG 59.828 60.000 0.00 0.00 0.00 4.00
98 99 0.457681 GCTCAGTCTCTCGAAGGTGC 60.458 60.000 0.00 0.00 0.00 5.01
99 100 1.173043 CTCAGTCTCTCGAAGGTGCT 58.827 55.000 0.00 0.00 0.00 4.40
100 101 1.543802 CTCAGTCTCTCGAAGGTGCTT 59.456 52.381 0.00 0.00 0.00 3.91
101 102 2.750166 CTCAGTCTCTCGAAGGTGCTTA 59.250 50.000 0.00 0.00 0.00 3.09
102 103 3.357203 TCAGTCTCTCGAAGGTGCTTAT 58.643 45.455 0.00 0.00 0.00 1.73
103 104 4.524053 TCAGTCTCTCGAAGGTGCTTATA 58.476 43.478 0.00 0.00 0.00 0.98
104 105 4.576873 TCAGTCTCTCGAAGGTGCTTATAG 59.423 45.833 0.00 0.00 0.00 1.31
105 106 3.886505 AGTCTCTCGAAGGTGCTTATAGG 59.113 47.826 0.00 0.00 0.00 2.57
106 107 3.004944 GTCTCTCGAAGGTGCTTATAGGG 59.995 52.174 0.00 0.00 0.00 3.53
107 108 2.959707 CTCTCGAAGGTGCTTATAGGGT 59.040 50.000 0.00 0.00 0.00 4.34
108 109 4.141321 TCTCTCGAAGGTGCTTATAGGGTA 60.141 45.833 0.00 0.00 0.00 3.69
109 110 4.142790 TCTCGAAGGTGCTTATAGGGTAG 58.857 47.826 0.00 0.00 0.00 3.18
110 111 3.228453 TCGAAGGTGCTTATAGGGTAGG 58.772 50.000 0.00 0.00 0.00 3.18
111 112 2.299297 CGAAGGTGCTTATAGGGTAGGG 59.701 54.545 0.00 0.00 0.00 3.53
112 113 3.315596 GAAGGTGCTTATAGGGTAGGGT 58.684 50.000 0.00 0.00 0.00 4.34
113 114 2.690840 AGGTGCTTATAGGGTAGGGTG 58.309 52.381 0.00 0.00 0.00 4.61
114 115 2.022330 AGGTGCTTATAGGGTAGGGTGT 60.022 50.000 0.00 0.00 0.00 4.16
115 116 2.104281 GGTGCTTATAGGGTAGGGTGTG 59.896 54.545 0.00 0.00 0.00 3.82
116 117 1.766496 TGCTTATAGGGTAGGGTGTGC 59.234 52.381 0.00 0.00 0.00 4.57
117 118 1.766496 GCTTATAGGGTAGGGTGTGCA 59.234 52.381 0.00 0.00 0.00 4.57
118 119 2.372172 GCTTATAGGGTAGGGTGTGCAT 59.628 50.000 0.00 0.00 0.00 3.96
119 120 3.807209 GCTTATAGGGTAGGGTGTGCATG 60.807 52.174 0.00 0.00 0.00 4.06
120 121 1.893315 ATAGGGTAGGGTGTGCATGT 58.107 50.000 0.00 0.00 0.00 3.21
121 122 0.908910 TAGGGTAGGGTGTGCATGTG 59.091 55.000 0.00 0.00 0.00 3.21
122 123 1.133809 AGGGTAGGGTGTGCATGTGT 61.134 55.000 0.00 0.00 0.00 3.72
123 124 0.960364 GGGTAGGGTGTGCATGTGTG 60.960 60.000 0.00 0.00 0.00 3.82
133 134 3.903876 GCATGTGTGCGTTCATAGG 57.096 52.632 0.00 0.00 42.28 2.57
134 135 0.378257 GCATGTGTGCGTTCATAGGG 59.622 55.000 0.00 0.00 42.28 3.53
135 136 1.016627 CATGTGTGCGTTCATAGGGG 58.983 55.000 0.00 0.00 0.00 4.79
136 137 0.618458 ATGTGTGCGTTCATAGGGGT 59.382 50.000 0.00 0.00 0.00 4.95
137 138 0.398696 TGTGTGCGTTCATAGGGGTT 59.601 50.000 0.00 0.00 0.00 4.11
138 139 1.202830 TGTGTGCGTTCATAGGGGTTT 60.203 47.619 0.00 0.00 0.00 3.27
139 140 1.199097 GTGTGCGTTCATAGGGGTTTG 59.801 52.381 0.00 0.00 0.00 2.93
140 141 1.202830 TGTGCGTTCATAGGGGTTTGT 60.203 47.619 0.00 0.00 0.00 2.83
141 142 1.199097 GTGCGTTCATAGGGGTTTGTG 59.801 52.381 0.00 0.00 0.00 3.33
142 143 1.202830 TGCGTTCATAGGGGTTTGTGT 60.203 47.619 0.00 0.00 0.00 3.72
143 144 2.038689 TGCGTTCATAGGGGTTTGTGTA 59.961 45.455 0.00 0.00 0.00 2.90
144 145 3.275999 GCGTTCATAGGGGTTTGTGTAT 58.724 45.455 0.00 0.00 0.00 2.29
145 146 3.064820 GCGTTCATAGGGGTTTGTGTATG 59.935 47.826 0.00 0.00 0.00 2.39
146 147 3.064820 CGTTCATAGGGGTTTGTGTATGC 59.935 47.826 0.00 0.00 0.00 3.14
147 148 4.013728 GTTCATAGGGGTTTGTGTATGCA 58.986 43.478 0.00 0.00 0.00 3.96
148 149 3.616219 TCATAGGGGTTTGTGTATGCAC 58.384 45.455 7.03 7.03 45.44 4.57
165 166 3.179010 GCACATATGTATGAGCGCTTG 57.821 47.619 13.26 5.50 39.68 4.01
166 167 2.663879 GCACATATGTATGAGCGCTTGC 60.664 50.000 13.26 9.78 39.68 4.01
167 168 1.794701 ACATATGTATGAGCGCTTGCG 59.205 47.619 13.26 10.90 39.26 4.85
168 169 1.794701 CATATGTATGAGCGCTTGCGT 59.205 47.619 13.26 3.97 45.69 5.24
169 170 1.487482 TATGTATGAGCGCTTGCGTC 58.513 50.000 13.26 12.36 45.69 5.19
170 171 0.179100 ATGTATGAGCGCTTGCGTCT 60.179 50.000 13.26 13.17 45.69 4.18
171 172 1.078201 TGTATGAGCGCTTGCGTCTG 61.078 55.000 13.26 0.00 45.69 3.51
172 173 1.078759 GTATGAGCGCTTGCGTCTGT 61.079 55.000 13.26 7.66 45.69 3.41
173 174 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
174 175 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
175 176 1.733041 GAGCGCTTGCGTCTGTACA 60.733 57.895 13.26 0.00 45.69 2.90
176 177 1.678269 GAGCGCTTGCGTCTGTACAG 61.678 60.000 17.17 17.17 45.69 2.74
177 178 2.022129 GCGCTTGCGTCTGTACAGT 61.022 57.895 21.99 0.00 0.00 3.55
178 179 1.775344 CGCTTGCGTCTGTACAGTG 59.225 57.895 21.99 16.32 0.00 3.66
179 180 0.939577 CGCTTGCGTCTGTACAGTGT 60.940 55.000 21.99 0.00 0.00 3.55
180 181 1.217882 GCTTGCGTCTGTACAGTGTT 58.782 50.000 21.99 0.00 0.00 3.32
181 182 2.400399 GCTTGCGTCTGTACAGTGTTA 58.600 47.619 21.99 0.00 0.00 2.41
182 183 2.798283 GCTTGCGTCTGTACAGTGTTAA 59.202 45.455 21.99 12.40 0.00 2.01
183 184 3.246699 GCTTGCGTCTGTACAGTGTTAAA 59.753 43.478 21.99 10.63 0.00 1.52
184 185 4.608445 GCTTGCGTCTGTACAGTGTTAAAG 60.608 45.833 21.99 18.61 0.00 1.85
185 186 4.310357 TGCGTCTGTACAGTGTTAAAGA 57.690 40.909 21.99 0.00 0.00 2.52
186 187 4.684877 TGCGTCTGTACAGTGTTAAAGAA 58.315 39.130 21.99 0.00 0.00 2.52
187 188 5.110598 TGCGTCTGTACAGTGTTAAAGAAA 58.889 37.500 21.99 0.00 0.00 2.52
188 189 5.581479 TGCGTCTGTACAGTGTTAAAGAAAA 59.419 36.000 21.99 0.00 0.00 2.29
189 190 6.259167 TGCGTCTGTACAGTGTTAAAGAAAAT 59.741 34.615 21.99 0.00 0.00 1.82
190 191 6.573725 GCGTCTGTACAGTGTTAAAGAAAATG 59.426 38.462 21.99 5.36 0.00 2.32
191 192 7.627340 CGTCTGTACAGTGTTAAAGAAAATGT 58.373 34.615 21.99 0.00 0.00 2.71
192 193 7.582679 CGTCTGTACAGTGTTAAAGAAAATGTG 59.417 37.037 21.99 0.00 0.00 3.21
193 194 7.855904 GTCTGTACAGTGTTAAAGAAAATGTGG 59.144 37.037 21.99 0.00 0.00 4.17
194 195 6.500041 TGTACAGTGTTAAAGAAAATGTGGC 58.500 36.000 0.00 0.00 0.00 5.01
195 196 5.590530 ACAGTGTTAAAGAAAATGTGGCA 57.409 34.783 0.00 0.00 0.00 4.92
196 197 5.971763 ACAGTGTTAAAGAAAATGTGGCAA 58.028 33.333 0.00 0.00 0.00 4.52
197 198 6.042143 ACAGTGTTAAAGAAAATGTGGCAAG 58.958 36.000 0.00 0.00 0.00 4.01
198 199 6.127479 ACAGTGTTAAAGAAAATGTGGCAAGA 60.127 34.615 0.00 0.00 0.00 3.02
199 200 6.198966 CAGTGTTAAAGAAAATGTGGCAAGAC 59.801 38.462 0.00 0.00 0.00 3.01
200 201 6.096846 AGTGTTAAAGAAAATGTGGCAAGACT 59.903 34.615 0.00 0.00 0.00 3.24
201 202 6.756542 GTGTTAAAGAAAATGTGGCAAGACTT 59.243 34.615 0.00 0.00 0.00 3.01
202 203 6.756074 TGTTAAAGAAAATGTGGCAAGACTTG 59.244 34.615 11.02 11.02 0.00 3.16
203 204 5.343307 AAAGAAAATGTGGCAAGACTTGT 57.657 34.783 16.39 0.00 0.00 3.16
204 205 4.574599 AGAAAATGTGGCAAGACTTGTC 57.425 40.909 12.99 12.99 35.37 3.18
205 206 4.210331 AGAAAATGTGGCAAGACTTGTCT 58.790 39.130 19.96 7.91 35.94 3.41
206 207 5.376625 AGAAAATGTGGCAAGACTTGTCTA 58.623 37.500 19.96 10.05 35.94 2.59
207 208 6.006449 AGAAAATGTGGCAAGACTTGTCTAT 58.994 36.000 19.96 11.75 35.94 1.98
208 209 6.491403 AGAAAATGTGGCAAGACTTGTCTATT 59.509 34.615 19.96 16.25 35.94 1.73
209 210 6.655078 AAATGTGGCAAGACTTGTCTATTT 57.345 33.333 19.96 20.12 35.94 1.40
210 211 7.759489 AAATGTGGCAAGACTTGTCTATTTA 57.241 32.000 22.53 3.96 33.96 1.40
211 212 7.944729 AATGTGGCAAGACTTGTCTATTTAT 57.055 32.000 19.96 5.45 35.94 1.40
212 213 6.985188 TGTGGCAAGACTTGTCTATTTATC 57.015 37.500 19.96 0.00 35.94 1.75
213 214 6.711277 TGTGGCAAGACTTGTCTATTTATCT 58.289 36.000 19.96 0.00 35.94 1.98
214 215 7.847096 TGTGGCAAGACTTGTCTATTTATCTA 58.153 34.615 19.96 0.00 35.94 1.98
215 216 8.486210 TGTGGCAAGACTTGTCTATTTATCTAT 58.514 33.333 19.96 0.00 35.94 1.98
262 264 1.625818 ACTGCCAACCCACAAAAACAA 59.374 42.857 0.00 0.00 0.00 2.83
265 267 2.276201 GCCAACCCACAAAAACAAGAC 58.724 47.619 0.00 0.00 0.00 3.01
326 328 4.034510 CAGCCAGGCGAAGAAAATAGTTAG 59.965 45.833 5.55 0.00 0.00 2.34
327 329 3.939592 GCCAGGCGAAGAAAATAGTTAGT 59.060 43.478 0.00 0.00 0.00 2.24
403 405 2.564553 GATCTGCAGCTCGACCGGTT 62.565 60.000 9.42 0.00 0.00 4.44
615 623 2.246397 CGCGTCTGTGCTGTGTTG 59.754 61.111 0.00 0.00 0.00 3.33
694 703 6.160684 GGAAACACGGCAAATACCTAAAAAT 58.839 36.000 0.00 0.00 0.00 1.82
735 973 1.272147 GGACAGCCAGGTCAAGGAAAT 60.272 52.381 3.58 0.00 39.59 2.17
738 976 4.273318 GACAGCCAGGTCAAGGAAATAAT 58.727 43.478 0.00 0.00 37.73 1.28
739 977 4.677182 ACAGCCAGGTCAAGGAAATAATT 58.323 39.130 0.00 0.00 0.00 1.40
740 978 5.826643 ACAGCCAGGTCAAGGAAATAATTA 58.173 37.500 0.00 0.00 0.00 1.40
741 979 6.252995 ACAGCCAGGTCAAGGAAATAATTAA 58.747 36.000 0.00 0.00 0.00 1.40
744 982 8.260114 CAGCCAGGTCAAGGAAATAATTAAAAT 58.740 33.333 0.00 0.00 0.00 1.82
745 983 8.478066 AGCCAGGTCAAGGAAATAATTAAAATC 58.522 33.333 0.00 0.00 0.00 2.17
782 1022 1.137697 CCTATAAAACGCCCTCCCCT 58.862 55.000 0.00 0.00 0.00 4.79
909 1149 2.669240 GCTACCAAGCCCTCCGTT 59.331 61.111 0.00 0.00 43.40 4.44
1026 1280 0.972983 AGTACGTGGAGCTGCTGGAT 60.973 55.000 7.01 0.00 0.00 3.41
1068 1322 2.121963 TTCCACTCCCACTGCCCT 60.122 61.111 0.00 0.00 0.00 5.19
1101 1355 1.380920 GTACTACCACCCTCCCGCT 60.381 63.158 0.00 0.00 0.00 5.52
1250 1511 2.264794 CGTCTAGGCCGGTTGCTT 59.735 61.111 1.90 0.00 40.92 3.91
1254 1515 0.902984 TCTAGGCCGGTTGCTTCTGA 60.903 55.000 1.90 0.00 40.92 3.27
1363 1633 4.080072 AGAGGGAAATGAAAGATGGGAGAC 60.080 45.833 0.00 0.00 0.00 3.36
1370 1640 6.923199 AATGAAAGATGGGAGACAATGTTT 57.077 33.333 0.00 0.00 0.00 2.83
1386 1656 9.199982 AGACAATGTTTGATTGATTGAATGAAC 57.800 29.630 0.00 0.00 32.47 3.18
1429 1699 7.712797 AGTTAAATTCGTTTGGTTTCTGATGT 58.287 30.769 0.00 0.00 0.00 3.06
1445 1715 4.082081 TCTGATGTGATTTTGCCATTCCAC 60.082 41.667 0.00 0.00 0.00 4.02
1481 1751 1.339055 TGCCTGAATCTCTTGTTCCCG 60.339 52.381 0.00 0.00 0.00 5.14
1488 1758 5.556915 TGAATCTCTTGTTCCCGTTTGTAT 58.443 37.500 0.00 0.00 0.00 2.29
1489 1759 6.001460 TGAATCTCTTGTTCCCGTTTGTATT 58.999 36.000 0.00 0.00 0.00 1.89
1491 1761 5.934935 TCTCTTGTTCCCGTTTGTATTTC 57.065 39.130 0.00 0.00 0.00 2.17
1509 1783 2.871096 TCTTTCCCAGCGTAATTGGT 57.129 45.000 0.00 0.00 33.73 3.67
1517 1791 2.474816 CAGCGTAATTGGTAGAGGCTC 58.525 52.381 6.34 6.34 0.00 4.70
1522 1796 3.322254 CGTAATTGGTAGAGGCTCCTCAT 59.678 47.826 17.40 6.03 44.99 2.90
1596 1870 5.699458 ACTACCGATTTTCTGTTTCGTTGAT 59.301 36.000 0.00 0.00 0.00 2.57
1599 1873 5.212194 CCGATTTTCTGTTTCGTTGATGTT 58.788 37.500 0.00 0.00 0.00 2.71
1601 1875 7.021196 CCGATTTTCTGTTTCGTTGATGTTAT 58.979 34.615 0.00 0.00 0.00 1.89
1614 1888 8.343168 TCGTTGATGTTATTTGTTATCCCTTT 57.657 30.769 0.00 0.00 0.00 3.11
1663 1937 0.114168 TGGGCACAGCAAACCCTATT 59.886 50.000 5.80 0.00 44.56 1.73
1669 1943 3.676873 GCACAGCAAACCCTATTCCATTG 60.677 47.826 0.00 0.00 0.00 2.82
1688 1962 5.532406 CCATTGTGTTAAGATAGATGGGTGG 59.468 44.000 0.00 0.00 31.25 4.61
1691 1965 5.030147 TGTGTTAAGATAGATGGGTGGAGT 58.970 41.667 0.00 0.00 0.00 3.85
1692 1966 5.104941 TGTGTTAAGATAGATGGGTGGAGTG 60.105 44.000 0.00 0.00 0.00 3.51
1700 1974 0.909610 ATGGGTGGAGTGTCGTGGAT 60.910 55.000 0.00 0.00 0.00 3.41
1701 1975 1.125093 TGGGTGGAGTGTCGTGGATT 61.125 55.000 0.00 0.00 0.00 3.01
1702 1976 0.673644 GGGTGGAGTGTCGTGGATTG 60.674 60.000 0.00 0.00 0.00 2.67
1704 1978 1.270625 GGTGGAGTGTCGTGGATTGAA 60.271 52.381 0.00 0.00 0.00 2.69
1705 1979 2.615493 GGTGGAGTGTCGTGGATTGAAT 60.615 50.000 0.00 0.00 0.00 2.57
1706 1980 3.369052 GGTGGAGTGTCGTGGATTGAATA 60.369 47.826 0.00 0.00 0.00 1.75
1707 1981 4.442706 GTGGAGTGTCGTGGATTGAATAT 58.557 43.478 0.00 0.00 0.00 1.28
1708 1982 5.452776 GGTGGAGTGTCGTGGATTGAATATA 60.453 44.000 0.00 0.00 0.00 0.86
1709 1983 6.223852 GTGGAGTGTCGTGGATTGAATATAT 58.776 40.000 0.00 0.00 0.00 0.86
1712 1986 7.232737 TGGAGTGTCGTGGATTGAATATATACT 59.767 37.037 0.00 0.00 0.00 2.12
1715 1989 6.812160 GTGTCGTGGATTGAATATATACTCCC 59.188 42.308 0.00 0.00 0.00 4.30
1716 1990 6.724441 TGTCGTGGATTGAATATATACTCCCT 59.276 38.462 0.00 0.00 0.00 4.20
1717 1991 7.093902 TGTCGTGGATTGAATATATACTCCCTC 60.094 40.741 0.00 0.00 0.00 4.30
1718 1992 6.380274 TCGTGGATTGAATATATACTCCCTCC 59.620 42.308 3.41 3.41 0.00 4.30
1719 1993 6.154534 CGTGGATTGAATATATACTCCCTCCA 59.845 42.308 7.41 7.41 0.00 3.86
1720 1994 7.147655 CGTGGATTGAATATATACTCCCTCCAT 60.148 40.741 12.34 0.00 32.21 3.41
1721 1995 8.552296 GTGGATTGAATATATACTCCCTCCATT 58.448 37.037 12.34 0.00 32.21 3.16
1722 1996 8.772250 TGGATTGAATATATACTCCCTCCATTC 58.228 37.037 7.41 0.00 0.00 2.67
1733 2007 6.163135 ACTCCCTCCATTCTAAATTACTCG 57.837 41.667 0.00 0.00 0.00 4.18
1734 2008 5.661759 ACTCCCTCCATTCTAAATTACTCGT 59.338 40.000 0.00 0.00 0.00 4.18
1735 2009 6.158023 TCCCTCCATTCTAAATTACTCGTC 57.842 41.667 0.00 0.00 0.00 4.20
1738 2012 5.258456 TCCATTCTAAATTACTCGTCGCT 57.742 39.130 0.00 0.00 0.00 4.93
1739 2013 6.381481 TCCATTCTAAATTACTCGTCGCTA 57.619 37.500 0.00 0.00 0.00 4.26
1740 2014 6.798482 TCCATTCTAAATTACTCGTCGCTAA 58.202 36.000 0.00 0.00 0.00 3.09
1741 2015 7.259882 TCCATTCTAAATTACTCGTCGCTAAA 58.740 34.615 0.00 0.00 0.00 1.85
1742 2016 7.760794 TCCATTCTAAATTACTCGTCGCTAAAA 59.239 33.333 0.00 0.00 0.00 1.52
1743 2017 8.548721 CCATTCTAAATTACTCGTCGCTAAAAT 58.451 33.333 0.00 0.00 0.00 1.82
1744 2018 9.358123 CATTCTAAATTACTCGTCGCTAAAATG 57.642 33.333 0.00 0.00 0.00 2.32
1746 2020 7.259882 TCTAAATTACTCGTCGCTAAAATGGA 58.740 34.615 0.00 0.00 0.00 3.41
1747 2021 6.920569 AAATTACTCGTCGCTAAAATGGAT 57.079 33.333 0.00 0.00 0.00 3.41
1748 2022 5.907197 ATTACTCGTCGCTAAAATGGATG 57.093 39.130 0.00 0.00 0.00 3.51
1752 2026 4.982916 ACTCGTCGCTAAAATGGATGTATC 59.017 41.667 0.00 0.00 0.00 2.24
1753 2027 5.196341 TCGTCGCTAAAATGGATGTATCT 57.804 39.130 0.00 0.00 0.00 1.98
1755 2029 6.379386 TCGTCGCTAAAATGGATGTATCTAG 58.621 40.000 0.00 0.00 0.00 2.43
1756 2030 6.206048 TCGTCGCTAAAATGGATGTATCTAGA 59.794 38.462 0.00 0.00 0.00 2.43
1757 2031 6.861572 CGTCGCTAAAATGGATGTATCTAGAA 59.138 38.462 0.00 0.00 0.00 2.10
1758 2032 7.148950 CGTCGCTAAAATGGATGTATCTAGAAC 60.149 40.741 0.00 0.00 0.00 3.01
1759 2033 7.868415 GTCGCTAAAATGGATGTATCTAGAACT 59.132 37.037 0.00 0.00 0.00 3.01
1760 2034 9.074576 TCGCTAAAATGGATGTATCTAGAACTA 57.925 33.333 0.00 0.00 0.00 2.24
1761 2035 9.692749 CGCTAAAATGGATGTATCTAGAACTAA 57.307 33.333 0.00 0.00 0.00 2.24
1788 2062 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
1789 2063 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
1790 2064 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
1791 2065 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
1792 2066 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
1793 2067 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
1794 2068 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
1799 2073 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
1800 2074 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
1801 2075 3.301579 CCATACGTGCGACAAGTAATTCG 60.302 47.826 0.00 0.00 32.82 3.34
1802 2076 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
1803 2077 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
1804 2078 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
1805 2079 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
1823 2097 0.389391 ACGGAAGTAGATGGATGGCG 59.611 55.000 0.00 0.00 46.88 5.69
1824 2098 0.946221 CGGAAGTAGATGGATGGCGC 60.946 60.000 0.00 0.00 0.00 6.53
1825 2099 0.106708 GGAAGTAGATGGATGGCGCA 59.893 55.000 10.83 0.00 0.00 6.09
1826 2100 1.271054 GGAAGTAGATGGATGGCGCAT 60.271 52.381 10.83 0.00 0.00 4.73
1827 2101 2.498167 GAAGTAGATGGATGGCGCATT 58.502 47.619 10.83 0.00 0.00 3.56
1828 2102 1.888215 AGTAGATGGATGGCGCATTG 58.112 50.000 10.83 0.00 0.00 2.82
1829 2103 0.877071 GTAGATGGATGGCGCATTGG 59.123 55.000 10.83 0.00 0.00 3.16
1830 2104 0.250858 TAGATGGATGGCGCATTGGG 60.251 55.000 10.83 0.00 0.00 4.12
1831 2105 3.216944 GATGGATGGCGCATTGGGC 62.217 63.158 16.71 16.71 40.84 5.36
1833 2107 4.211502 GGATGGCGCATTGGGCAC 62.212 66.667 24.71 15.31 45.85 5.01
1834 2108 3.451004 GATGGCGCATTGGGCACA 61.451 61.111 24.71 19.63 45.85 4.57
1835 2109 3.420214 GATGGCGCATTGGGCACAG 62.420 63.158 24.71 0.00 45.85 3.66
1838 2112 4.360964 GCGCATTGGGCACAGCAA 62.361 61.111 19.64 0.00 45.17 3.91
1839 2113 2.339348 CGCATTGGGCACAGCAAA 59.661 55.556 0.76 0.00 45.17 3.68
1840 2114 2.023223 CGCATTGGGCACAGCAAAC 61.023 57.895 0.76 0.00 45.17 2.93
1841 2115 1.668793 GCATTGGGCACAGCAAACC 60.669 57.895 0.00 0.00 43.97 3.27
1842 2116 1.004679 CATTGGGCACAGCAAACCC 60.005 57.895 0.00 0.00 44.52 4.11
1862 2136 9.157104 CAAACCCTACAAGTTAAATTTGTTTGT 57.843 29.630 16.02 16.02 39.36 2.83
1885 2160 2.099592 TCTGATGCGATTTTGCCATTCC 59.900 45.455 0.00 0.00 0.00 3.01
1910 2192 8.800972 CCTGTTTCAAATCGTTGATTGAATATG 58.199 33.333 2.20 0.00 43.29 1.78
1911 2193 8.172159 TGTTTCAAATCGTTGATTGAATATGC 57.828 30.769 2.20 0.00 43.29 3.14
2021 2303 3.893813 GGCAGAGCAAAATCCTATTCCAT 59.106 43.478 0.00 0.00 0.00 3.41
2033 2315 2.213499 CTATTCCATTGTCACCGGAGC 58.787 52.381 9.46 0.00 0.00 4.70
2049 2331 2.238521 GGAGCATGGTGGAACAAGAAA 58.761 47.619 0.00 0.00 44.16 2.52
2060 2342 2.888414 GGAACAAGAAAATCGAACCCCA 59.112 45.455 0.00 0.00 0.00 4.96
2116 2406 3.207669 GCAAGATCTGCCCTGCCG 61.208 66.667 5.92 0.00 46.13 5.69
2117 2407 3.207669 CAAGATCTGCCCTGCCGC 61.208 66.667 0.00 0.00 0.00 6.53
2136 2426 3.992641 CCCCCACCCAAACCCTCC 61.993 72.222 0.00 0.00 0.00 4.30
2137 2427 2.863988 CCCCACCCAAACCCTCCT 60.864 66.667 0.00 0.00 0.00 3.69
2138 2428 2.478803 CCCCACCCAAACCCTCCTT 61.479 63.158 0.00 0.00 0.00 3.36
2152 2888 0.466555 CTCCTTCCCTCTCGACCGAT 60.467 60.000 0.00 0.00 0.00 4.18
2153 2889 0.752009 TCCTTCCCTCTCGACCGATG 60.752 60.000 0.00 0.00 0.00 3.84
2154 2890 1.736586 CTTCCCTCTCGACCGATGG 59.263 63.158 0.00 0.00 0.00 3.51
2155 2891 1.000019 TTCCCTCTCGACCGATGGT 60.000 57.895 9.50 0.00 39.44 3.55
2192 2928 2.890808 TCTGAAAGTCACGTCTGCTT 57.109 45.000 0.00 0.00 33.76 3.91
2193 2929 2.473816 TCTGAAAGTCACGTCTGCTTG 58.526 47.619 0.00 0.00 33.76 4.01
2194 2930 1.528586 CTGAAAGTCACGTCTGCTTGG 59.471 52.381 0.00 0.00 0.00 3.61
2196 2932 1.527311 GAAAGTCACGTCTGCTTGGTC 59.473 52.381 0.00 0.00 0.00 4.02
2198 2934 2.022129 GTCACGTCTGCTTGGTCCG 61.022 63.158 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
1 2 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
2 3 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
3 4 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
4 5 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
5 6 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
6 7 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
7 8 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
8 9 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
21 22 0.521735 GCCTCATTGTTGACGGGAAC 59.478 55.000 0.00 0.00 0.00 3.62
22 23 0.109532 TGCCTCATTGTTGACGGGAA 59.890 50.000 0.00 0.00 0.00 3.97
23 24 0.605319 GTGCCTCATTGTTGACGGGA 60.605 55.000 0.00 0.00 0.00 5.14
24 25 1.586154 GGTGCCTCATTGTTGACGGG 61.586 60.000 0.00 0.00 0.00 5.28
25 26 0.606401 AGGTGCCTCATTGTTGACGG 60.606 55.000 0.00 0.00 0.00 4.79
26 27 1.732259 GTAGGTGCCTCATTGTTGACG 59.268 52.381 0.00 0.00 0.00 4.35
27 28 1.732259 CGTAGGTGCCTCATTGTTGAC 59.268 52.381 0.00 0.00 0.00 3.18
28 29 1.943968 GCGTAGGTGCCTCATTGTTGA 60.944 52.381 0.00 0.00 0.00 3.18
29 30 0.447801 GCGTAGGTGCCTCATTGTTG 59.552 55.000 0.00 0.00 0.00 3.33
30 31 0.324943 AGCGTAGGTGCCTCATTGTT 59.675 50.000 0.00 0.00 36.17 2.83
31 32 1.983224 AGCGTAGGTGCCTCATTGT 59.017 52.632 0.00 0.00 36.17 2.71
32 33 4.941609 AGCGTAGGTGCCTCATTG 57.058 55.556 0.00 0.00 36.17 2.82
41 42 3.380637 AGATTTACGATGTCAGCGTAGGT 59.619 43.478 21.16 14.62 43.95 3.08
42 43 3.966154 AGATTTACGATGTCAGCGTAGG 58.034 45.455 21.16 0.00 43.95 3.18
43 44 4.598062 TGAGATTTACGATGTCAGCGTAG 58.402 43.478 21.16 0.00 43.95 3.51
44 45 4.625972 TGAGATTTACGATGTCAGCGTA 57.374 40.909 18.74 18.74 42.62 4.42
45 46 3.503827 TGAGATTTACGATGTCAGCGT 57.496 42.857 21.00 21.00 45.01 5.07
46 47 4.105486 TCTTGAGATTTACGATGTCAGCG 58.895 43.478 9.31 9.31 0.00 5.18
47 48 5.750547 TCATCTTGAGATTTACGATGTCAGC 59.249 40.000 0.00 0.00 34.58 4.26
48 49 7.943413 ATCATCTTGAGATTTACGATGTCAG 57.057 36.000 0.00 0.00 34.58 3.51
51 52 9.862371 GGTATATCATCTTGAGATTTACGATGT 57.138 33.333 0.00 0.00 33.48 3.06
52 53 9.014533 CGGTATATCATCTTGAGATTTACGATG 57.985 37.037 0.00 0.00 33.48 3.84
53 54 8.191446 CCGGTATATCATCTTGAGATTTACGAT 58.809 37.037 0.00 0.00 33.48 3.73
54 55 7.535997 CCGGTATATCATCTTGAGATTTACGA 58.464 38.462 0.00 0.00 33.48 3.43
55 56 6.253727 GCCGGTATATCATCTTGAGATTTACG 59.746 42.308 1.90 0.00 33.48 3.18
56 57 7.324178 AGCCGGTATATCATCTTGAGATTTAC 58.676 38.462 1.90 0.00 30.15 2.01
57 58 7.178451 TGAGCCGGTATATCATCTTGAGATTTA 59.822 37.037 1.90 0.00 30.15 1.40
58 59 6.014242 TGAGCCGGTATATCATCTTGAGATTT 60.014 38.462 1.90 0.00 30.15 2.17
59 60 5.481824 TGAGCCGGTATATCATCTTGAGATT 59.518 40.000 1.90 0.00 30.15 2.40
60 61 5.019470 TGAGCCGGTATATCATCTTGAGAT 58.981 41.667 1.90 0.00 32.49 2.75
61 62 4.407365 TGAGCCGGTATATCATCTTGAGA 58.593 43.478 1.90 0.00 0.00 3.27
62 63 4.219507 ACTGAGCCGGTATATCATCTTGAG 59.780 45.833 1.90 0.00 0.00 3.02
63 64 4.152647 ACTGAGCCGGTATATCATCTTGA 58.847 43.478 1.90 0.00 0.00 3.02
64 65 4.219507 AGACTGAGCCGGTATATCATCTTG 59.780 45.833 1.90 0.00 0.00 3.02
65 66 4.411927 AGACTGAGCCGGTATATCATCTT 58.588 43.478 1.90 0.00 0.00 2.40
66 67 4.013728 GAGACTGAGCCGGTATATCATCT 58.986 47.826 1.90 7.75 0.00 2.90
67 68 4.013728 AGAGACTGAGCCGGTATATCATC 58.986 47.826 1.90 3.56 0.00 2.92
68 69 4.013728 GAGAGACTGAGCCGGTATATCAT 58.986 47.826 1.90 0.00 0.00 2.45
69 70 3.413327 GAGAGACTGAGCCGGTATATCA 58.587 50.000 1.90 1.83 0.00 2.15
70 71 2.417239 CGAGAGACTGAGCCGGTATATC 59.583 54.545 1.90 0.00 0.00 1.63
71 72 2.038689 TCGAGAGACTGAGCCGGTATAT 59.961 50.000 1.90 0.00 33.31 0.86
72 73 1.415289 TCGAGAGACTGAGCCGGTATA 59.585 52.381 1.90 0.00 33.31 1.47
73 74 0.180642 TCGAGAGACTGAGCCGGTAT 59.819 55.000 1.90 0.00 33.31 2.73
74 75 0.035725 TTCGAGAGACTGAGCCGGTA 60.036 55.000 1.90 0.00 41.84 4.02
75 76 1.303398 TTCGAGAGACTGAGCCGGT 60.303 57.895 1.90 0.00 41.84 5.28
76 77 1.431440 CTTCGAGAGACTGAGCCGG 59.569 63.158 0.00 0.00 41.84 6.13
77 78 1.309499 ACCTTCGAGAGACTGAGCCG 61.309 60.000 0.00 0.00 41.84 5.52
78 79 0.172352 CACCTTCGAGAGACTGAGCC 59.828 60.000 0.00 0.00 41.84 4.70
79 80 0.457681 GCACCTTCGAGAGACTGAGC 60.458 60.000 0.00 0.00 41.84 4.26
80 81 1.173043 AGCACCTTCGAGAGACTGAG 58.827 55.000 0.00 0.00 41.84 3.35
81 82 1.621992 AAGCACCTTCGAGAGACTGA 58.378 50.000 0.00 0.00 41.84 3.41
82 83 3.791973 ATAAGCACCTTCGAGAGACTG 57.208 47.619 0.00 0.00 41.84 3.51
83 84 3.886505 CCTATAAGCACCTTCGAGAGACT 59.113 47.826 0.00 0.00 41.84 3.24
84 85 3.004944 CCCTATAAGCACCTTCGAGAGAC 59.995 52.174 0.00 0.00 41.84 3.36
85 86 3.223435 CCCTATAAGCACCTTCGAGAGA 58.777 50.000 0.00 0.00 39.20 3.10
86 87 2.959707 ACCCTATAAGCACCTTCGAGAG 59.040 50.000 0.00 0.00 0.00 3.20
87 88 3.028094 ACCCTATAAGCACCTTCGAGA 57.972 47.619 0.00 0.00 0.00 4.04
88 89 3.256136 CCTACCCTATAAGCACCTTCGAG 59.744 52.174 0.00 0.00 0.00 4.04
89 90 3.228453 CCTACCCTATAAGCACCTTCGA 58.772 50.000 0.00 0.00 0.00 3.71
90 91 2.299297 CCCTACCCTATAAGCACCTTCG 59.701 54.545 0.00 0.00 0.00 3.79
91 92 3.071167 CACCCTACCCTATAAGCACCTTC 59.929 52.174 0.00 0.00 0.00 3.46
92 93 3.046374 CACCCTACCCTATAAGCACCTT 58.954 50.000 0.00 0.00 0.00 3.50
93 94 2.022330 ACACCCTACCCTATAAGCACCT 60.022 50.000 0.00 0.00 0.00 4.00
94 95 2.104281 CACACCCTACCCTATAAGCACC 59.896 54.545 0.00 0.00 0.00 5.01
95 96 2.484947 GCACACCCTACCCTATAAGCAC 60.485 54.545 0.00 0.00 0.00 4.40
96 97 1.766496 GCACACCCTACCCTATAAGCA 59.234 52.381 0.00 0.00 0.00 3.91
97 98 1.766496 TGCACACCCTACCCTATAAGC 59.234 52.381 0.00 0.00 0.00 3.09
98 99 3.391296 ACATGCACACCCTACCCTATAAG 59.609 47.826 0.00 0.00 0.00 1.73
99 100 3.135712 CACATGCACACCCTACCCTATAA 59.864 47.826 0.00 0.00 0.00 0.98
100 101 2.703536 CACATGCACACCCTACCCTATA 59.296 50.000 0.00 0.00 0.00 1.31
101 102 1.490490 CACATGCACACCCTACCCTAT 59.510 52.381 0.00 0.00 0.00 2.57
102 103 0.908910 CACATGCACACCCTACCCTA 59.091 55.000 0.00 0.00 0.00 3.53
103 104 1.133809 ACACATGCACACCCTACCCT 61.134 55.000 0.00 0.00 0.00 4.34
104 105 0.960364 CACACATGCACACCCTACCC 60.960 60.000 0.00 0.00 0.00 3.69
105 106 2.555123 CACACATGCACACCCTACC 58.445 57.895 0.00 0.00 0.00 3.18
116 117 1.016627 CCCCTATGAACGCACACATG 58.983 55.000 0.00 0.00 0.00 3.21
117 118 0.618458 ACCCCTATGAACGCACACAT 59.382 50.000 0.00 0.00 0.00 3.21
118 119 0.398696 AACCCCTATGAACGCACACA 59.601 50.000 0.00 0.00 0.00 3.72
119 120 1.199097 CAAACCCCTATGAACGCACAC 59.801 52.381 0.00 0.00 0.00 3.82
120 121 1.202830 ACAAACCCCTATGAACGCACA 60.203 47.619 0.00 0.00 0.00 4.57
121 122 1.199097 CACAAACCCCTATGAACGCAC 59.801 52.381 0.00 0.00 0.00 5.34
122 123 1.202830 ACACAAACCCCTATGAACGCA 60.203 47.619 0.00 0.00 0.00 5.24
123 124 1.530323 ACACAAACCCCTATGAACGC 58.470 50.000 0.00 0.00 0.00 4.84
124 125 3.064820 GCATACACAAACCCCTATGAACG 59.935 47.826 0.00 0.00 0.00 3.95
125 126 4.013728 TGCATACACAAACCCCTATGAAC 58.986 43.478 0.00 0.00 0.00 3.18
126 127 4.013728 GTGCATACACAAACCCCTATGAA 58.986 43.478 0.00 0.00 46.61 2.57
127 128 3.616219 GTGCATACACAAACCCCTATGA 58.384 45.455 0.00 0.00 46.61 2.15
145 146 2.663879 GCAAGCGCTCATACATATGTGC 60.664 50.000 18.81 9.27 44.98 4.57
146 147 2.410646 CGCAAGCGCTCATACATATGTG 60.411 50.000 18.81 5.37 35.26 3.21
147 148 1.794701 CGCAAGCGCTCATACATATGT 59.205 47.619 12.06 13.93 35.26 2.29
148 149 1.794701 ACGCAAGCGCTCATACATATG 59.205 47.619 12.06 3.22 44.19 1.78
149 150 2.061773 GACGCAAGCGCTCATACATAT 58.938 47.619 12.06 0.00 44.19 1.78
150 151 1.067060 AGACGCAAGCGCTCATACATA 59.933 47.619 12.06 0.00 44.19 2.29
151 152 0.179100 AGACGCAAGCGCTCATACAT 60.179 50.000 12.06 0.00 44.19 2.29
152 153 1.078201 CAGACGCAAGCGCTCATACA 61.078 55.000 12.06 0.00 44.19 2.29
153 154 1.078759 ACAGACGCAAGCGCTCATAC 61.079 55.000 12.06 1.58 44.19 2.39
154 155 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
155 156 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
156 157 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
157 158 1.678269 CTGTACAGACGCAAGCGCTC 61.678 60.000 18.45 11.06 44.19 5.03
158 159 1.734477 CTGTACAGACGCAAGCGCT 60.734 57.895 18.45 2.64 44.19 5.92
159 160 2.022129 ACTGTACAGACGCAAGCGC 61.022 57.895 29.30 0.00 44.19 5.92
160 161 0.939577 ACACTGTACAGACGCAAGCG 60.940 55.000 29.30 13.50 46.03 4.68
161 162 1.217882 AACACTGTACAGACGCAAGC 58.782 50.000 29.30 0.00 45.62 4.01
163 164 4.684877 TCTTTAACACTGTACAGACGCAA 58.315 39.130 29.30 13.86 0.00 4.85
164 165 4.310357 TCTTTAACACTGTACAGACGCA 57.690 40.909 29.30 8.69 0.00 5.24
165 166 5.646467 TTTCTTTAACACTGTACAGACGC 57.354 39.130 29.30 0.00 0.00 5.19
166 167 7.582679 CACATTTTCTTTAACACTGTACAGACG 59.417 37.037 29.30 20.24 0.00 4.18
167 168 7.855904 CCACATTTTCTTTAACACTGTACAGAC 59.144 37.037 29.30 0.00 0.00 3.51
168 169 7.468084 GCCACATTTTCTTTAACACTGTACAGA 60.468 37.037 29.30 3.66 0.00 3.41
169 170 6.636850 GCCACATTTTCTTTAACACTGTACAG 59.363 38.462 21.44 21.44 0.00 2.74
170 171 6.095580 TGCCACATTTTCTTTAACACTGTACA 59.904 34.615 0.00 0.00 0.00 2.90
171 172 6.500041 TGCCACATTTTCTTTAACACTGTAC 58.500 36.000 0.00 0.00 0.00 2.90
172 173 6.701145 TGCCACATTTTCTTTAACACTGTA 57.299 33.333 0.00 0.00 0.00 2.74
173 174 5.590530 TGCCACATTTTCTTTAACACTGT 57.409 34.783 0.00 0.00 0.00 3.55
174 175 6.198966 GTCTTGCCACATTTTCTTTAACACTG 59.801 38.462 0.00 0.00 0.00 3.66
175 176 6.096846 AGTCTTGCCACATTTTCTTTAACACT 59.903 34.615 0.00 0.00 0.00 3.55
176 177 6.273071 AGTCTTGCCACATTTTCTTTAACAC 58.727 36.000 0.00 0.00 0.00 3.32
177 178 6.463995 AGTCTTGCCACATTTTCTTTAACA 57.536 33.333 0.00 0.00 0.00 2.41
178 179 6.756542 ACAAGTCTTGCCACATTTTCTTTAAC 59.243 34.615 12.66 0.00 0.00 2.01
179 180 6.872920 ACAAGTCTTGCCACATTTTCTTTAA 58.127 32.000 12.66 0.00 0.00 1.52
180 181 6.321181 AGACAAGTCTTGCCACATTTTCTTTA 59.679 34.615 12.66 0.00 36.31 1.85
181 182 5.127682 AGACAAGTCTTGCCACATTTTCTTT 59.872 36.000 12.66 0.00 36.31 2.52
182 183 4.646492 AGACAAGTCTTGCCACATTTTCTT 59.354 37.500 12.66 0.00 36.31 2.52
183 184 4.210331 AGACAAGTCTTGCCACATTTTCT 58.790 39.130 12.66 2.71 36.31 2.52
184 185 4.574599 AGACAAGTCTTGCCACATTTTC 57.425 40.909 12.66 0.38 36.31 2.29
185 186 6.655078 AATAGACAAGTCTTGCCACATTTT 57.345 33.333 12.66 0.00 40.93 1.82
186 187 6.655078 AAATAGACAAGTCTTGCCACATTT 57.345 33.333 12.66 8.61 40.93 2.32
187 188 7.831193 AGATAAATAGACAAGTCTTGCCACATT 59.169 33.333 12.66 3.18 40.93 2.71
188 189 7.341805 AGATAAATAGACAAGTCTTGCCACAT 58.658 34.615 12.66 0.00 40.93 3.21
189 190 6.711277 AGATAAATAGACAAGTCTTGCCACA 58.289 36.000 12.66 0.00 40.93 4.17
190 191 8.768955 CATAGATAAATAGACAAGTCTTGCCAC 58.231 37.037 12.66 4.92 40.93 5.01
191 192 8.486210 ACATAGATAAATAGACAAGTCTTGCCA 58.514 33.333 12.66 0.00 40.93 4.92
192 193 8.894768 ACATAGATAAATAGACAAGTCTTGCC 57.105 34.615 12.66 1.09 40.93 4.52
200 201 9.219603 GGCAGCATTACATAGATAAATAGACAA 57.780 33.333 0.00 0.00 0.00 3.18
201 202 8.374743 TGGCAGCATTACATAGATAAATAGACA 58.625 33.333 0.00 0.00 0.00 3.41
202 203 8.777865 TGGCAGCATTACATAGATAAATAGAC 57.222 34.615 0.00 0.00 0.00 2.59
203 204 9.387257 CATGGCAGCATTACATAGATAAATAGA 57.613 33.333 0.00 0.00 0.00 1.98
204 205 8.618677 CCATGGCAGCATTACATAGATAAATAG 58.381 37.037 0.00 0.00 0.00 1.73
205 206 7.067372 GCCATGGCAGCATTACATAGATAAATA 59.933 37.037 32.08 0.00 41.49 1.40
206 207 6.127535 GCCATGGCAGCATTACATAGATAAAT 60.128 38.462 32.08 0.00 41.49 1.40
207 208 5.183713 GCCATGGCAGCATTACATAGATAAA 59.816 40.000 32.08 0.00 41.49 1.40
208 209 4.701651 GCCATGGCAGCATTACATAGATAA 59.298 41.667 32.08 0.00 41.49 1.75
209 210 4.264253 GCCATGGCAGCATTACATAGATA 58.736 43.478 32.08 0.00 41.49 1.98
210 211 3.087031 GCCATGGCAGCATTACATAGAT 58.913 45.455 32.08 0.00 41.49 1.98
211 212 2.507484 GCCATGGCAGCATTACATAGA 58.493 47.619 32.08 0.00 41.49 1.98
285 287 4.224147 TGGCTGGCTGTATTAACTGACTAA 59.776 41.667 2.00 0.00 33.84 2.24
403 405 2.181777 GATGCTCTGCGTCGGTCA 59.818 61.111 0.00 0.00 34.82 4.02
615 623 0.037975 TCCGTTAGGTTTCCGTGCTC 60.038 55.000 0.00 0.00 39.05 4.26
671 680 8.745464 TTATTTTTAGGTATTTGCCGTGTTTC 57.255 30.769 0.00 0.00 0.00 2.78
709 947 1.855295 TGACCTGGCTGTCCGTATTA 58.145 50.000 0.00 0.00 34.25 0.98
717 955 3.806949 TTATTTCCTTGACCTGGCTGT 57.193 42.857 0.00 0.00 0.00 4.40
735 973 8.916062 GGAAATAAACGGGGGAGATTTTAATTA 58.084 33.333 0.00 0.00 0.00 1.40
738 976 6.495847 AGGAAATAAACGGGGGAGATTTTAA 58.504 36.000 0.00 0.00 0.00 1.52
739 977 6.082228 AGGAAATAAACGGGGGAGATTTTA 57.918 37.500 0.00 0.00 0.00 1.52
740 978 4.942944 AGGAAATAAACGGGGGAGATTTT 58.057 39.130 0.00 0.00 0.00 1.82
741 979 4.533815 GAGGAAATAAACGGGGGAGATTT 58.466 43.478 0.00 0.00 0.00 2.17
744 982 1.841919 GGAGGAAATAAACGGGGGAGA 59.158 52.381 0.00 0.00 0.00 3.71
745 983 1.844497 AGGAGGAAATAAACGGGGGAG 59.156 52.381 0.00 0.00 0.00 4.30
782 1022 1.846439 CTTGGGGAAGCTATGGAGGAA 59.154 52.381 0.00 0.00 0.00 3.36
909 1149 0.320771 GCAGCCGAGAACTGGAAAGA 60.321 55.000 0.00 0.00 35.62 2.52
1068 1322 2.043752 TACATCCGGGCCGTCTGA 60.044 61.111 26.32 15.70 0.00 3.27
1250 1511 1.758936 TAAATCCGGACGAGCTCAGA 58.241 50.000 15.40 2.24 0.00 3.27
1254 1515 1.030457 ACGATAAATCCGGACGAGCT 58.970 50.000 17.20 0.00 0.00 4.09
1259 1520 1.878953 ATGGCACGATAAATCCGGAC 58.121 50.000 6.12 0.00 0.00 4.79
1330 1599 2.362397 TCATTTCCCTCTCTCGATTCGG 59.638 50.000 6.18 0.00 0.00 4.30
1363 1633 7.328982 TCCGTTCATTCAATCAATCAAACATTG 59.671 33.333 0.00 0.00 0.00 2.82
1370 1640 6.756299 TCAATCCGTTCATTCAATCAATCA 57.244 33.333 0.00 0.00 0.00 2.57
1386 1656 7.636259 TTTAACTTGCAAATTCTTCAATCCG 57.364 32.000 0.00 0.00 0.00 4.18
1419 1689 5.349543 GGAATGGCAAAATCACATCAGAAAC 59.650 40.000 0.00 0.00 0.00 2.78
1429 1699 3.833650 ACATGAGTGGAATGGCAAAATCA 59.166 39.130 0.00 0.00 0.00 2.57
1445 1715 3.189080 TCAGGCAACGATTTCAACATGAG 59.811 43.478 0.00 0.00 46.39 2.90
1481 1751 4.499037 ACGCTGGGAAAGAAATACAAAC 57.501 40.909 0.00 0.00 0.00 2.93
1488 1758 3.492337 ACCAATTACGCTGGGAAAGAAA 58.508 40.909 0.00 0.00 38.36 2.52
1489 1759 3.149005 ACCAATTACGCTGGGAAAGAA 57.851 42.857 0.00 0.00 38.36 2.52
1491 1761 3.869065 TCTACCAATTACGCTGGGAAAG 58.131 45.455 0.00 0.00 38.36 2.62
1509 1783 4.873010 ACTCTTGTTATGAGGAGCCTCTA 58.127 43.478 16.87 4.88 43.12 2.43
1566 1840 2.280628 CAGAAAATCGGTAGTGCCCTC 58.719 52.381 0.00 0.00 0.00 4.30
1614 1888 4.870426 CGCTTGTGCCTCTCTTTTCTAATA 59.130 41.667 0.00 0.00 35.36 0.98
1616 1890 3.067106 CGCTTGTGCCTCTCTTTTCTAA 58.933 45.455 0.00 0.00 35.36 2.10
1617 1891 2.612972 CCGCTTGTGCCTCTCTTTTCTA 60.613 50.000 0.00 0.00 35.36 2.10
1619 1893 0.519077 CCGCTTGTGCCTCTCTTTTC 59.481 55.000 0.00 0.00 35.36 2.29
1643 1917 0.114168 ATAGGGTTTGCTGTGCCCAA 59.886 50.000 0.00 0.00 44.69 4.12
1663 1937 6.356556 CACCCATCTATCTTAACACAATGGA 58.643 40.000 0.00 0.00 35.30 3.41
1669 1943 5.104900 ACACTCCACCCATCTATCTTAACAC 60.105 44.000 0.00 0.00 0.00 3.32
1688 1962 7.755822 GGAGTATATATTCAATCCACGACACTC 59.244 40.741 7.47 0.00 0.00 3.51
1691 1965 6.724441 AGGGAGTATATATTCAATCCACGACA 59.276 38.462 7.47 0.00 0.00 4.35
1692 1966 7.171630 AGGGAGTATATATTCAATCCACGAC 57.828 40.000 7.47 0.00 0.00 4.34
1707 1981 9.021807 CGAGTAATTTAGAATGGAGGGAGTATA 57.978 37.037 0.00 0.00 0.00 1.47
1708 1982 7.509659 ACGAGTAATTTAGAATGGAGGGAGTAT 59.490 37.037 0.00 0.00 0.00 2.12
1709 1983 6.837568 ACGAGTAATTTAGAATGGAGGGAGTA 59.162 38.462 0.00 0.00 0.00 2.59
1712 1986 5.221185 CGACGAGTAATTTAGAATGGAGGGA 60.221 44.000 0.00 0.00 0.00 4.20
1715 1989 5.282510 AGCGACGAGTAATTTAGAATGGAG 58.717 41.667 0.00 0.00 0.00 3.86
1716 1990 5.258456 AGCGACGAGTAATTTAGAATGGA 57.742 39.130 0.00 0.00 0.00 3.41
1717 1991 7.459394 TTTAGCGACGAGTAATTTAGAATGG 57.541 36.000 0.00 0.00 0.00 3.16
1718 1992 9.358123 CATTTTAGCGACGAGTAATTTAGAATG 57.642 33.333 0.00 0.00 0.00 2.67
1719 1993 8.548721 CCATTTTAGCGACGAGTAATTTAGAAT 58.451 33.333 0.00 0.00 0.00 2.40
1720 1994 7.760794 TCCATTTTAGCGACGAGTAATTTAGAA 59.239 33.333 0.00 0.00 0.00 2.10
1721 1995 7.259882 TCCATTTTAGCGACGAGTAATTTAGA 58.740 34.615 0.00 0.00 0.00 2.10
1722 1996 7.459394 TCCATTTTAGCGACGAGTAATTTAG 57.541 36.000 0.00 0.00 0.00 1.85
1724 1998 6.315393 ACATCCATTTTAGCGACGAGTAATTT 59.685 34.615 0.00 0.00 0.00 1.82
1725 1999 5.815740 ACATCCATTTTAGCGACGAGTAATT 59.184 36.000 0.00 0.00 0.00 1.40
1726 2000 5.357257 ACATCCATTTTAGCGACGAGTAAT 58.643 37.500 0.00 0.00 0.00 1.89
1727 2001 4.751060 ACATCCATTTTAGCGACGAGTAA 58.249 39.130 0.00 0.00 0.00 2.24
1728 2002 4.380841 ACATCCATTTTAGCGACGAGTA 57.619 40.909 0.00 0.00 0.00 2.59
1729 2003 3.247006 ACATCCATTTTAGCGACGAGT 57.753 42.857 0.00 0.00 0.00 4.18
1730 2004 5.223382 AGATACATCCATTTTAGCGACGAG 58.777 41.667 0.00 0.00 0.00 4.18
1731 2005 5.196341 AGATACATCCATTTTAGCGACGA 57.804 39.130 0.00 0.00 0.00 4.20
1732 2006 6.379386 TCTAGATACATCCATTTTAGCGACG 58.621 40.000 0.00 0.00 0.00 5.12
1733 2007 7.868415 AGTTCTAGATACATCCATTTTAGCGAC 59.132 37.037 0.00 0.00 0.00 5.19
1734 2008 7.952671 AGTTCTAGATACATCCATTTTAGCGA 58.047 34.615 0.00 0.00 0.00 4.93
1735 2009 9.692749 TTAGTTCTAGATACATCCATTTTAGCG 57.307 33.333 0.00 0.00 0.00 4.26
1763 2037 7.535997 GCACGTATGGATGTATCTAGATGTAA 58.464 38.462 15.79 1.06 29.44 2.41
1765 2039 5.392057 CGCACGTATGGATGTATCTAGATGT 60.392 44.000 15.79 1.25 30.36 3.06
1766 2040 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
1769 2043 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
1770 2044 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
1773 2047 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
1774 2048 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
1776 2050 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
1777 2051 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
1779 2053 3.301579 CGAATTACTTGTCGCACGTATGG 60.302 47.826 0.00 0.00 0.00 2.74
1781 2055 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
1783 2057 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
1784 2058 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
1785 2059 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
1786 2060 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
1788 2062 2.598589 TCCGTTCCGAATTACTTGTCG 58.401 47.619 0.00 0.00 37.01 4.35
1789 2063 3.992427 ACTTCCGTTCCGAATTACTTGTC 59.008 43.478 0.00 0.00 0.00 3.18
1790 2064 3.999046 ACTTCCGTTCCGAATTACTTGT 58.001 40.909 0.00 0.00 0.00 3.16
1791 2065 5.404946 TCTACTTCCGTTCCGAATTACTTG 58.595 41.667 0.00 0.00 0.00 3.16
1792 2066 5.649782 TCTACTTCCGTTCCGAATTACTT 57.350 39.130 0.00 0.00 0.00 2.24
1793 2067 5.451520 CCATCTACTTCCGTTCCGAATTACT 60.452 44.000 0.00 0.00 0.00 2.24
1794 2068 4.743644 CCATCTACTTCCGTTCCGAATTAC 59.256 45.833 0.00 0.00 0.00 1.89
1799 2073 2.133281 TCCATCTACTTCCGTTCCGA 57.867 50.000 0.00 0.00 0.00 4.55
1800 2074 2.545952 CCATCCATCTACTTCCGTTCCG 60.546 54.545 0.00 0.00 0.00 4.30
1801 2075 2.807108 GCCATCCATCTACTTCCGTTCC 60.807 54.545 0.00 0.00 0.00 3.62
1802 2076 2.484889 GCCATCCATCTACTTCCGTTC 58.515 52.381 0.00 0.00 0.00 3.95
1803 2077 1.202533 CGCCATCCATCTACTTCCGTT 60.203 52.381 0.00 0.00 0.00 4.44
1804 2078 0.389391 CGCCATCCATCTACTTCCGT 59.611 55.000 0.00 0.00 0.00 4.69
1805 2079 0.946221 GCGCCATCCATCTACTTCCG 60.946 60.000 0.00 0.00 0.00 4.30
1806 2080 0.106708 TGCGCCATCCATCTACTTCC 59.893 55.000 4.18 0.00 0.00 3.46
1807 2081 2.175878 ATGCGCCATCCATCTACTTC 57.824 50.000 4.18 0.00 0.00 3.01
1808 2082 2.224606 CAATGCGCCATCCATCTACTT 58.775 47.619 4.18 0.00 0.00 2.24
1809 2083 1.544093 CCAATGCGCCATCCATCTACT 60.544 52.381 4.18 0.00 0.00 2.57
1810 2084 0.877071 CCAATGCGCCATCCATCTAC 59.123 55.000 4.18 0.00 0.00 2.59
1811 2085 0.250858 CCCAATGCGCCATCCATCTA 60.251 55.000 4.18 0.00 0.00 1.98
1812 2086 1.529948 CCCAATGCGCCATCCATCT 60.530 57.895 4.18 0.00 0.00 2.90
1813 2087 3.045142 CCCAATGCGCCATCCATC 58.955 61.111 4.18 0.00 0.00 3.51
1814 2088 3.228759 GCCCAATGCGCCATCCAT 61.229 61.111 4.18 0.00 0.00 3.41
1815 2089 4.755507 TGCCCAATGCGCCATCCA 62.756 61.111 4.18 0.00 45.60 3.41
1816 2090 4.211502 GTGCCCAATGCGCCATCC 62.212 66.667 4.18 0.00 44.91 3.51
1822 2096 2.023223 GTTTGCTGTGCCCAATGCG 61.023 57.895 0.00 0.00 45.60 4.73
1823 2097 1.668793 GGTTTGCTGTGCCCAATGC 60.669 57.895 0.00 0.00 41.77 3.56
1824 2098 1.004679 GGGTTTGCTGTGCCCAATG 60.005 57.895 0.00 0.00 41.93 2.82
1825 2099 0.114168 TAGGGTTTGCTGTGCCCAAT 59.886 50.000 0.00 0.00 44.69 3.16
1826 2100 0.825840 GTAGGGTTTGCTGTGCCCAA 60.826 55.000 0.00 0.00 44.69 4.12
1827 2101 1.228429 GTAGGGTTTGCTGTGCCCA 60.228 57.895 0.00 0.00 44.69 5.36
1828 2102 0.825840 TTGTAGGGTTTGCTGTGCCC 60.826 55.000 0.00 0.00 42.64 5.36
1829 2103 0.598065 CTTGTAGGGTTTGCTGTGCC 59.402 55.000 0.00 0.00 0.00 5.01
1830 2104 1.318576 ACTTGTAGGGTTTGCTGTGC 58.681 50.000 0.00 0.00 0.00 4.57
1831 2105 5.508200 TTTAACTTGTAGGGTTTGCTGTG 57.492 39.130 0.00 0.00 0.00 3.66
1832 2106 6.724893 AATTTAACTTGTAGGGTTTGCTGT 57.275 33.333 0.00 0.00 0.00 4.40
1833 2107 6.983890 ACAAATTTAACTTGTAGGGTTTGCTG 59.016 34.615 0.00 0.00 35.26 4.41
1834 2108 7.119709 ACAAATTTAACTTGTAGGGTTTGCT 57.880 32.000 0.00 0.00 35.26 3.91
1835 2109 7.780008 AACAAATTTAACTTGTAGGGTTTGC 57.220 32.000 0.00 0.00 35.98 3.68
1836 2110 9.157104 ACAAACAAATTTAACTTGTAGGGTTTG 57.843 29.630 15.90 15.90 43.98 2.93
1837 2111 9.727859 AACAAACAAATTTAACTTGTAGGGTTT 57.272 25.926 10.44 2.53 35.98 3.27
1838 2112 9.727859 AAACAAACAAATTTAACTTGTAGGGTT 57.272 25.926 10.44 0.00 35.98 4.11
1839 2113 9.373603 GAAACAAACAAATTTAACTTGTAGGGT 57.626 29.630 10.44 0.00 35.98 4.34
1840 2114 9.594478 AGAAACAAACAAATTTAACTTGTAGGG 57.406 29.630 10.44 0.00 35.98 3.53
1862 2136 3.872511 ATGGCAAAATCGCATCAGAAA 57.127 38.095 0.00 0.00 0.00 2.52
1885 2160 8.316046 GCATATTCAATCAACGATTTGAAACAG 58.684 33.333 2.60 0.00 45.01 3.16
2003 2285 6.268566 GTGACAATGGAATAGGATTTTGCTC 58.731 40.000 0.00 0.00 0.00 4.26
2021 2303 3.156714 ACCATGCTCCGGTGACAA 58.843 55.556 7.92 0.00 34.69 3.18
2033 2315 4.764679 TCGATTTTCTTGTTCCACCATG 57.235 40.909 0.00 0.00 0.00 3.66
2049 2331 0.461339 CGACGGAATGGGGTTCGATT 60.461 55.000 0.00 0.00 37.73 3.34
2129 2419 0.615261 GTCGAGAGGGAAGGAGGGTT 60.615 60.000 0.00 0.00 0.00 4.11
2130 2420 1.000612 GTCGAGAGGGAAGGAGGGT 59.999 63.158 0.00 0.00 0.00 4.34
2132 2422 2.122167 CGGTCGAGAGGGAAGGAGG 61.122 68.421 0.00 0.00 0.00 4.30
2133 2423 0.466555 ATCGGTCGAGAGGGAAGGAG 60.467 60.000 0.00 0.00 0.00 3.69
2134 2424 0.752009 CATCGGTCGAGAGGGAAGGA 60.752 60.000 0.00 0.00 0.00 3.36
2136 2426 1.038130 ACCATCGGTCGAGAGGGAAG 61.038 60.000 11.82 0.00 44.18 3.46
2137 2427 1.000019 ACCATCGGTCGAGAGGGAA 60.000 57.895 11.82 0.00 44.18 3.97
2138 2428 1.453379 GACCATCGGTCGAGAGGGA 60.453 63.158 11.82 0.00 44.18 4.20
2152 2888 1.714787 AGTAGTACTCCCACCAGACCA 59.285 52.381 0.00 0.00 0.00 4.02
2153 2889 2.528673 AGTAGTACTCCCACCAGACC 57.471 55.000 0.00 0.00 0.00 3.85
2154 2890 3.444388 CAGAAGTAGTACTCCCACCAGAC 59.556 52.174 2.58 0.00 0.00 3.51
2155 2891 3.332783 TCAGAAGTAGTACTCCCACCAGA 59.667 47.826 2.58 0.00 0.00 3.86
2156 2892 3.698289 TCAGAAGTAGTACTCCCACCAG 58.302 50.000 2.58 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.