Multiple sequence alignment - TraesCS4B01G248500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G248500 chr4B 100.000 4822 0 0 1 4822 513727769 513722948 0.000000e+00 8905.0
1 TraesCS4B01G248500 chr4A 92.837 1759 99 20 1493 3238 47390084 47391828 0.000000e+00 2525.0
2 TraesCS4B01G248500 chr4A 90.471 913 54 18 501 1381 47389176 47390087 0.000000e+00 1173.0
3 TraesCS4B01G248500 chr4A 89.804 716 33 17 3450 4158 47392042 47392724 0.000000e+00 881.0
4 TraesCS4B01G248500 chr4A 92.248 129 7 1 1 129 47388776 47388901 3.830000e-41 180.0
5 TraesCS4B01G248500 chr4A 86.325 117 9 4 804 920 51838598 51838707 2.360000e-23 121.0
6 TraesCS4B01G248500 chr4A 86.325 117 9 4 804 920 530575562 530575671 2.360000e-23 121.0
7 TraesCS4B01G248500 chr4A 97.436 39 1 0 472 510 590126618 590126656 3.110000e-07 67.6
8 TraesCS4B01G248500 chr4D 94.624 1451 69 5 1502 2943 416763306 416761856 0.000000e+00 2239.0
9 TraesCS4B01G248500 chr4D 90.862 974 39 18 3430 4393 416760818 416759885 0.000000e+00 1260.0
10 TraesCS4B01G248500 chr4D 90.570 912 53 17 503 1381 416764224 416763313 0.000000e+00 1177.0
11 TraesCS4B01G248500 chr4D 89.130 322 20 8 3104 3413 416761435 416761117 2.100000e-103 387.0
12 TraesCS4B01G248500 chr4D 79.914 463 61 16 4387 4820 416759667 416759208 1.300000e-80 311.0
13 TraesCS4B01G248500 chr4D 91.573 178 8 2 1 178 416764630 416764460 6.240000e-59 239.0
14 TraesCS4B01G248500 chr4D 94.737 95 5 0 2996 3090 416761658 416761564 1.080000e-31 148.0
15 TraesCS4B01G248500 chr5A 85.027 915 114 16 1633 2527 401439846 401440757 0.000000e+00 909.0
16 TraesCS4B01G248500 chr5A 85.748 428 52 6 954 1375 401439283 401439707 1.230000e-120 444.0
17 TraesCS4B01G248500 chr5A 87.109 256 33 0 3568 3823 401441578 401441833 1.700000e-74 291.0
18 TraesCS4B01G248500 chr5A 87.179 156 18 2 2629 2784 401440814 401440967 4.960000e-40 176.0
19 TraesCS4B01G248500 chr5A 82.468 154 17 7 770 920 508241935 508242081 5.070000e-25 126.0
20 TraesCS4B01G248500 chr5A 86.325 117 9 4 804 920 350150326 350150435 2.360000e-23 121.0
21 TraesCS4B01G248500 chr5D 85.088 912 111 18 1637 2527 297579495 297578588 0.000000e+00 907.0
22 TraesCS4B01G248500 chr5D 88.000 400 44 4 954 1351 297580076 297579679 2.030000e-128 470.0
23 TraesCS4B01G248500 chr5D 86.328 256 35 0 3568 3823 297577795 297577540 3.670000e-71 279.0
24 TraesCS4B01G248500 chr5D 87.582 153 17 2 2632 2784 297578530 297578380 4.960000e-40 176.0
25 TraesCS4B01G248500 chr5D 100.000 33 0 0 470 502 233689698 233689730 1.450000e-05 62.1
26 TraesCS4B01G248500 chr5B 84.256 921 111 19 1637 2526 337906099 337905182 0.000000e+00 867.0
27 TraesCS4B01G248500 chr5B 86.682 428 49 5 954 1375 337906680 337906255 7.310000e-128 468.0
28 TraesCS4B01G248500 chr5B 87.891 256 31 0 3568 3823 337904391 337904136 7.840000e-78 302.0
29 TraesCS4B01G248500 chr5B 95.349 129 6 0 1375 1503 375744863 375744735 6.330000e-49 206.0
30 TraesCS4B01G248500 chr5B 87.500 144 18 0 2641 2784 337905117 337904974 2.990000e-37 167.0
31 TraesCS4B01G248500 chr2A 78.384 458 52 19 503 920 729584560 729584110 2.230000e-63 254.0
32 TraesCS4B01G248500 chr2A 94.958 119 6 0 936 1054 729583951 729583833 2.290000e-43 187.0
33 TraesCS4B01G248500 chr2B 96.667 120 4 0 1379 1498 71462313 71462432 2.940000e-47 200.0
34 TraesCS4B01G248500 chr2B 94.262 122 7 0 1379 1500 174658565 174658686 2.290000e-43 187.0
35 TraesCS4B01G248500 chr2B 97.222 36 0 1 470 505 449361109 449361075 5.210000e-05 60.2
36 TraesCS4B01G248500 chr2D 95.200 125 6 0 1378 1502 519131051 519130927 1.060000e-46 198.0
37 TraesCS4B01G248500 chr2D 88.462 52 6 0 451 502 639729389 639729440 4.030000e-06 63.9
38 TraesCS4B01G248500 chr7B 95.041 121 5 1 1379 1499 3887414 3887533 6.370000e-44 189.0
39 TraesCS4B01G248500 chr1B 95.041 121 4 2 1378 1497 16246360 16246241 6.370000e-44 189.0
40 TraesCS4B01G248500 chr1B 95.041 121 4 2 1378 1497 16251254 16251135 6.370000e-44 189.0
41 TraesCS4B01G248500 chr1B 95.041 121 4 2 1378 1497 16256147 16256028 6.370000e-44 189.0
42 TraesCS4B01G248500 chr7D 93.600 125 8 0 1371 1495 176565934 176565810 2.290000e-43 187.0
43 TraesCS4B01G248500 chr7A 86.325 117 9 4 804 920 525409846 525409737 2.360000e-23 121.0
44 TraesCS4B01G248500 chr3A 86.325 117 9 4 804 920 1562280 1562171 2.360000e-23 121.0
45 TraesCS4B01G248500 chr1A 85.470 117 10 4 804 920 37474636 37474527 1.100000e-21 115.0
46 TraesCS4B01G248500 chr1D 89.189 74 6 1 4527 4600 10814362 10814291 1.850000e-14 91.6
47 TraesCS4B01G248500 chr3B 92.157 51 4 0 3406 3456 476393585 476393635 6.690000e-09 73.1
48 TraesCS4B01G248500 chr3B 93.333 45 3 0 3407 3451 28334939 28334895 3.110000e-07 67.6
49 TraesCS4B01G248500 chr3B 92.500 40 2 1 470 509 689307007 689306969 6.740000e-04 56.5
50 TraesCS4B01G248500 chr6A 90.566 53 3 2 451 502 573409836 573409887 8.660000e-08 69.4
51 TraesCS4B01G248500 chr3D 90.566 53 3 2 451 502 582933445 582933496 8.660000e-08 69.4
52 TraesCS4B01G248500 chr3D 83.333 78 8 5 427 502 25201406 25201480 3.110000e-07 67.6
53 TraesCS4B01G248500 chr6B 93.182 44 2 1 467 509 717952605 717952562 4.030000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G248500 chr4B 513722948 513727769 4821 True 8905.00 8905 100.000000 1 4822 1 chr4B.!!$R1 4821
1 TraesCS4B01G248500 chr4A 47388776 47392724 3948 False 1189.75 2525 91.340000 1 4158 4 chr4A.!!$F4 4157
2 TraesCS4B01G248500 chr4D 416759208 416764630 5422 True 823.00 2239 90.201429 1 4820 7 chr4D.!!$R1 4819
3 TraesCS4B01G248500 chr5A 401439283 401441833 2550 False 455.00 909 86.265750 954 3823 4 chr5A.!!$F3 2869
4 TraesCS4B01G248500 chr5D 297577540 297580076 2536 True 458.00 907 86.749500 954 3823 4 chr5D.!!$R1 2869
5 TraesCS4B01G248500 chr5B 337904136 337906680 2544 True 451.00 867 86.582250 954 3823 4 chr5B.!!$R2 2869
6 TraesCS4B01G248500 chr2A 729583833 729584560 727 True 220.50 254 86.671000 503 1054 2 chr2A.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
725 772 0.108520 CCTGCCTGCGCATTTTGAAT 60.109 50.000 12.24 0.00 46.11 2.57 F
1491 1724 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
1494 1727 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 F
1495 1728 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73 F
1497 1730 0.982852 TCCGGACGGAGGGAGTACTA 60.983 60.000 9.76 0.00 39.76 1.82 F
3416 4438 1.144298 TGCTAGGGGCGTATCTAGACA 59.856 52.381 0.00 0.00 45.43 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2639 2928 1.965643 ACAACATCAGCCAAACTGCAT 59.034 42.857 0.00 0.0 46.76 3.96 R
2750 3039 0.175760 TAGCAACATCCCTCGCTGAC 59.824 55.000 0.00 0.0 35.93 3.51 R
3022 3664 1.149148 GACGAAAGACCAGCCTTGTC 58.851 55.000 0.00 0.0 0.00 3.18 R
3038 3680 2.824936 AGATCCTGCATCATAGAGGACG 59.175 50.000 0.00 0.0 38.73 4.79 R
3428 4450 4.127918 ACTCCCTCCGATCCATATTACA 57.872 45.455 0.00 0.0 0.00 2.41 R
4478 5814 0.036164 TCCAACCTGTTGATCCACGG 59.964 55.000 11.47 0.0 42.93 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.080434 GCGAACAGCGTTCCTCTCT 60.080 57.895 13.33 0.00 43.41 3.10
163 164 5.371526 AGCAGTTTCAGAGTTTCAGATTCA 58.628 37.500 0.00 0.00 0.00 2.57
165 166 5.238214 GCAGTTTCAGAGTTTCAGATTCAGT 59.762 40.000 0.00 0.00 0.00 3.41
166 167 6.565623 GCAGTTTCAGAGTTTCAGATTCAGTC 60.566 42.308 0.00 0.00 0.00 3.51
167 168 5.694006 AGTTTCAGAGTTTCAGATTCAGTCG 59.306 40.000 0.00 0.00 0.00 4.18
168 169 4.855715 TCAGAGTTTCAGATTCAGTCGT 57.144 40.909 0.00 0.00 0.00 4.34
169 170 4.799678 TCAGAGTTTCAGATTCAGTCGTC 58.200 43.478 0.00 0.00 0.00 4.20
170 171 3.605916 CAGAGTTTCAGATTCAGTCGTCG 59.394 47.826 0.00 0.00 0.00 5.12
171 172 2.917971 GAGTTTCAGATTCAGTCGTCGG 59.082 50.000 0.00 0.00 0.00 4.79
172 173 1.390463 GTTTCAGATTCAGTCGTCGGC 59.610 52.381 0.00 0.00 0.00 5.54
173 174 0.888619 TTCAGATTCAGTCGTCGGCT 59.111 50.000 0.00 0.00 0.00 5.52
181 182 2.177531 GTCGTCGGCTCGTTGCTA 59.822 61.111 0.00 0.00 42.39 3.49
192 193 3.933332 GGCTCGTTGCTAGTTAGAATTGT 59.067 43.478 0.00 0.00 42.39 2.71
200 201 7.519002 GTTGCTAGTTAGAATTGTGATTTCGT 58.481 34.615 0.00 0.00 0.00 3.85
201 202 7.060600 TGCTAGTTAGAATTGTGATTTCGTG 57.939 36.000 0.00 0.00 0.00 4.35
202 203 6.092122 TGCTAGTTAGAATTGTGATTTCGTGG 59.908 38.462 0.00 0.00 0.00 4.94
208 209 2.610219 TTGTGATTTCGTGGCGATTG 57.390 45.000 0.00 0.00 35.23 2.67
209 210 0.801872 TGTGATTTCGTGGCGATTGG 59.198 50.000 0.00 0.00 35.23 3.16
210 211 0.802494 GTGATTTCGTGGCGATTGGT 59.198 50.000 0.00 0.00 35.23 3.67
211 212 1.199097 GTGATTTCGTGGCGATTGGTT 59.801 47.619 0.00 0.00 35.23 3.67
212 213 1.883275 TGATTTCGTGGCGATTGGTTT 59.117 42.857 0.00 0.00 35.23 3.27
213 214 2.250188 GATTTCGTGGCGATTGGTTTG 58.750 47.619 0.00 0.00 35.23 2.93
214 215 1.309950 TTTCGTGGCGATTGGTTTGA 58.690 45.000 0.00 0.00 35.23 2.69
215 216 1.529226 TTCGTGGCGATTGGTTTGAT 58.471 45.000 0.00 0.00 35.23 2.57
216 217 1.529226 TCGTGGCGATTGGTTTGATT 58.471 45.000 0.00 0.00 0.00 2.57
217 218 1.198867 TCGTGGCGATTGGTTTGATTG 59.801 47.619 0.00 0.00 0.00 2.67
218 219 1.068610 CGTGGCGATTGGTTTGATTGT 60.069 47.619 0.00 0.00 0.00 2.71
219 220 2.606795 CGTGGCGATTGGTTTGATTGTT 60.607 45.455 0.00 0.00 0.00 2.83
220 221 3.389221 GTGGCGATTGGTTTGATTGTTT 58.611 40.909 0.00 0.00 0.00 2.83
221 222 3.184178 GTGGCGATTGGTTTGATTGTTTG 59.816 43.478 0.00 0.00 0.00 2.93
222 223 2.157474 GGCGATTGGTTTGATTGTTTGC 59.843 45.455 0.00 0.00 0.00 3.68
223 224 2.157474 GCGATTGGTTTGATTGTTTGCC 59.843 45.455 0.00 0.00 0.00 4.52
224 225 3.388308 CGATTGGTTTGATTGTTTGCCA 58.612 40.909 0.00 0.00 0.00 4.92
225 226 3.429543 CGATTGGTTTGATTGTTTGCCAG 59.570 43.478 0.00 0.00 0.00 4.85
226 227 3.902881 TTGGTTTGATTGTTTGCCAGT 57.097 38.095 0.00 0.00 0.00 4.00
227 228 3.176552 TGGTTTGATTGTTTGCCAGTG 57.823 42.857 0.00 0.00 0.00 3.66
228 229 1.866601 GGTTTGATTGTTTGCCAGTGC 59.133 47.619 0.00 0.00 38.26 4.40
229 230 2.483538 GGTTTGATTGTTTGCCAGTGCT 60.484 45.455 0.00 0.00 38.71 4.40
230 231 2.512485 TTGATTGTTTGCCAGTGCTG 57.488 45.000 0.00 0.00 38.71 4.41
271 272 1.079405 CGCTGGTTCGGTGGTATGT 60.079 57.895 0.00 0.00 0.00 2.29
274 275 2.277084 GCTGGTTCGGTGGTATGTAAG 58.723 52.381 0.00 0.00 0.00 2.34
277 278 4.766375 CTGGTTCGGTGGTATGTAAGAAT 58.234 43.478 0.00 0.00 0.00 2.40
280 281 4.201881 GGTTCGGTGGTATGTAAGAATTGC 60.202 45.833 0.00 0.00 0.00 3.56
281 282 4.209307 TCGGTGGTATGTAAGAATTGCA 57.791 40.909 0.00 0.00 46.86 4.08
282 283 4.188462 TCGGTGGTATGTAAGAATTGCAG 58.812 43.478 0.00 0.00 45.78 4.41
284 285 4.271049 CGGTGGTATGTAAGAATTGCAGAG 59.729 45.833 0.00 0.00 45.78 3.35
285 286 4.035675 GGTGGTATGTAAGAATTGCAGAGC 59.964 45.833 0.00 0.00 45.78 4.09
287 288 3.565902 GGTATGTAAGAATTGCAGAGCCC 59.434 47.826 0.00 0.00 45.78 5.19
288 289 2.877097 TGTAAGAATTGCAGAGCCCA 57.123 45.000 0.00 0.00 35.19 5.36
291 292 5.052693 TGTAAGAATTGCAGAGCCCATAT 57.947 39.130 0.00 0.00 35.19 1.78
293 294 5.893255 TGTAAGAATTGCAGAGCCCATATTT 59.107 36.000 0.00 0.00 35.19 1.40
314 321 6.788598 TTTGCTAAATTTATCTGGCATCCA 57.211 33.333 9.79 0.00 0.00 3.41
324 331 3.271250 TGGCATCCAGGCTTTTCTC 57.729 52.632 0.00 0.00 44.55 2.87
325 332 0.405198 TGGCATCCAGGCTTTTCTCA 59.595 50.000 0.00 0.00 44.55 3.27
361 381 1.699656 GCTGACGATCATTGCGTGCT 61.700 55.000 0.00 0.00 42.77 4.40
362 382 1.559831 CTGACGATCATTGCGTGCTA 58.440 50.000 0.00 0.00 42.77 3.49
381 404 7.381408 GCGTGCTAAGTAGTCATCATAACAATA 59.619 37.037 0.00 0.00 0.00 1.90
402 425 9.632638 ACAATATGAGTTGTTAGCCTTCATATT 57.367 29.630 10.59 10.59 45.33 1.28
405 428 7.944729 ATGAGTTGTTAGCCTTCATATTTGT 57.055 32.000 0.00 0.00 0.00 2.83
415 438 5.716228 AGCCTTCATATTTGTCATTGGTGAA 59.284 36.000 0.00 0.00 35.80 3.18
417 440 6.873076 GCCTTCATATTTGTCATTGGTGAAAA 59.127 34.615 0.00 0.00 35.80 2.29
437 460 8.654215 GTGAAAATTACAGTGGCTAACTACTAC 58.346 37.037 0.00 0.00 36.83 2.73
438 461 8.591072 TGAAAATTACAGTGGCTAACTACTACT 58.409 33.333 0.00 0.00 36.83 2.57
439 462 8.999220 AAAATTACAGTGGCTAACTACTACTC 57.001 34.615 0.00 0.00 36.83 2.59
440 463 6.712179 ATTACAGTGGCTAACTACTACTCC 57.288 41.667 0.00 0.00 36.83 3.85
441 464 3.363627 ACAGTGGCTAACTACTACTCCC 58.636 50.000 0.00 0.00 36.83 4.30
442 465 3.011482 ACAGTGGCTAACTACTACTCCCT 59.989 47.826 0.00 0.00 36.83 4.20
443 466 3.633065 CAGTGGCTAACTACTACTCCCTC 59.367 52.174 0.00 0.00 36.83 4.30
444 467 2.957680 GTGGCTAACTACTACTCCCTCC 59.042 54.545 0.00 0.00 0.00 4.30
445 468 2.228925 GGCTAACTACTACTCCCTCCG 58.771 57.143 0.00 0.00 0.00 4.63
446 469 2.228925 GCTAACTACTACTCCCTCCGG 58.771 57.143 0.00 0.00 0.00 5.14
447 470 2.228925 CTAACTACTACTCCCTCCGGC 58.771 57.143 0.00 0.00 0.00 6.13
448 471 0.396835 AACTACTACTCCCTCCGGCC 60.397 60.000 0.00 0.00 0.00 6.13
449 472 1.531128 CTACTACTCCCTCCGGCCC 60.531 68.421 0.00 0.00 0.00 5.80
450 473 2.009208 CTACTACTCCCTCCGGCCCT 62.009 65.000 0.00 0.00 0.00 5.19
451 474 0.698886 TACTACTCCCTCCGGCCCTA 60.699 60.000 0.00 0.00 0.00 3.53
452 475 1.228613 CTACTCCCTCCGGCCCTAG 60.229 68.421 0.00 0.00 0.00 3.02
453 476 2.009208 CTACTCCCTCCGGCCCTAGT 62.009 65.000 0.00 0.09 0.00 2.57
454 477 0.698886 TACTCCCTCCGGCCCTAGTA 60.699 60.000 0.00 0.00 0.00 1.82
455 478 1.369855 ACTCCCTCCGGCCCTAGTAT 61.370 60.000 0.00 0.00 0.00 2.12
456 479 0.702902 CTCCCTCCGGCCCTAGTATA 59.297 60.000 0.00 0.00 0.00 1.47
457 480 1.076677 CTCCCTCCGGCCCTAGTATAA 59.923 57.143 0.00 0.00 0.00 0.98
458 481 1.504660 TCCCTCCGGCCCTAGTATAAA 59.495 52.381 0.00 0.00 0.00 1.40
459 482 1.900486 CCCTCCGGCCCTAGTATAAAG 59.100 57.143 0.00 0.00 0.00 1.85
460 483 2.606378 CCTCCGGCCCTAGTATAAAGT 58.394 52.381 0.00 0.00 0.00 2.66
461 484 2.970640 CCTCCGGCCCTAGTATAAAGTT 59.029 50.000 0.00 0.00 0.00 2.66
462 485 3.244112 CCTCCGGCCCTAGTATAAAGTTG 60.244 52.174 0.00 0.00 0.00 3.16
463 486 3.377573 TCCGGCCCTAGTATAAAGTTGT 58.622 45.455 0.00 0.00 0.00 3.32
464 487 4.545678 TCCGGCCCTAGTATAAAGTTGTA 58.454 43.478 0.00 0.00 0.00 2.41
465 488 4.342092 TCCGGCCCTAGTATAAAGTTGTAC 59.658 45.833 0.00 0.00 0.00 2.90
466 489 4.502087 CCGGCCCTAGTATAAAGTTGTACC 60.502 50.000 0.00 0.00 0.00 3.34
467 490 4.625028 GGCCCTAGTATAAAGTTGTACCG 58.375 47.826 0.00 0.00 0.00 4.02
468 491 4.502087 GGCCCTAGTATAAAGTTGTACCGG 60.502 50.000 0.00 0.00 0.00 5.28
469 492 4.342092 GCCCTAGTATAAAGTTGTACCGGA 59.658 45.833 9.46 0.00 0.00 5.14
470 493 5.508657 GCCCTAGTATAAAGTTGTACCGGAG 60.509 48.000 9.46 0.00 0.00 4.63
471 494 5.595952 CCCTAGTATAAAGTTGTACCGGAGT 59.404 44.000 9.46 0.00 0.00 3.85
472 495 6.097412 CCCTAGTATAAAGTTGTACCGGAGTT 59.903 42.308 9.46 0.00 0.00 3.01
473 496 6.976925 CCTAGTATAAAGTTGTACCGGAGTTG 59.023 42.308 9.46 0.00 0.00 3.16
474 497 6.594788 AGTATAAAGTTGTACCGGAGTTGA 57.405 37.500 9.46 0.00 0.00 3.18
475 498 6.628185 AGTATAAAGTTGTACCGGAGTTGAG 58.372 40.000 9.46 0.00 0.00 3.02
476 499 5.733620 ATAAAGTTGTACCGGAGTTGAGA 57.266 39.130 9.46 0.00 0.00 3.27
477 500 3.382048 AAGTTGTACCGGAGTTGAGAC 57.618 47.619 9.46 0.00 0.00 3.36
478 501 2.313317 AGTTGTACCGGAGTTGAGACA 58.687 47.619 9.46 0.00 0.00 3.41
479 502 2.035576 AGTTGTACCGGAGTTGAGACAC 59.964 50.000 9.46 0.00 0.00 3.67
480 503 1.991121 TGTACCGGAGTTGAGACACT 58.009 50.000 9.46 0.00 0.00 3.55
481 504 2.313317 TGTACCGGAGTTGAGACACTT 58.687 47.619 9.46 0.00 0.00 3.16
482 505 3.489355 TGTACCGGAGTTGAGACACTTA 58.511 45.455 9.46 0.00 0.00 2.24
483 506 4.084287 TGTACCGGAGTTGAGACACTTAT 58.916 43.478 9.46 0.00 0.00 1.73
484 507 4.525487 TGTACCGGAGTTGAGACACTTATT 59.475 41.667 9.46 0.00 0.00 1.40
485 508 4.618920 ACCGGAGTTGAGACACTTATTT 57.381 40.909 9.46 0.00 0.00 1.40
486 509 4.969484 ACCGGAGTTGAGACACTTATTTT 58.031 39.130 9.46 0.00 0.00 1.82
487 510 4.755123 ACCGGAGTTGAGACACTTATTTTG 59.245 41.667 9.46 0.00 0.00 2.44
488 511 4.154195 CCGGAGTTGAGACACTTATTTTGG 59.846 45.833 0.00 0.00 0.00 3.28
489 512 4.154195 CGGAGTTGAGACACTTATTTTGGG 59.846 45.833 0.00 0.00 0.00 4.12
490 513 5.313712 GGAGTTGAGACACTTATTTTGGGA 58.686 41.667 0.00 0.00 0.00 4.37
491 514 5.181433 GGAGTTGAGACACTTATTTTGGGAC 59.819 44.000 0.00 0.00 0.00 4.46
492 515 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
493 516 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
494 517 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
495 518 3.671716 AGACACTTATTTTGGGACGGAC 58.328 45.455 0.00 0.00 0.00 4.79
496 519 2.414138 GACACTTATTTTGGGACGGACG 59.586 50.000 0.00 0.00 0.00 4.79
497 520 1.735571 CACTTATTTTGGGACGGACGG 59.264 52.381 0.00 0.00 0.00 4.79
498 521 1.624813 ACTTATTTTGGGACGGACGGA 59.375 47.619 0.00 0.00 0.00 4.69
499 522 2.277084 CTTATTTTGGGACGGACGGAG 58.723 52.381 0.00 0.00 0.00 4.63
524 547 8.196103 AGTACTAGTTTTCTCCGACCAATTATC 58.804 37.037 0.00 0.00 0.00 1.75
530 553 0.179067 TCCGACCAATTATCCGGTGC 60.179 55.000 0.00 0.00 42.34 5.01
547 570 2.860735 GGTGCGTGATTCATCTCTGTAC 59.139 50.000 0.00 0.00 0.00 2.90
567 590 4.442375 ACGTTACTGAGATGAACAGGAG 57.558 45.455 0.00 0.00 39.38 3.69
571 594 5.564848 CGTTACTGAGATGAACAGGAGAACA 60.565 44.000 0.00 0.00 39.38 3.18
623 646 3.632643 TCATGCAGATTGGTTCTAGCA 57.367 42.857 0.00 0.00 40.39 3.49
646 669 1.802508 CGGTTGCTCGTATGATGCAGA 60.803 52.381 0.00 0.00 38.01 4.26
657 692 3.797225 GATGCAGATCGCTCGCCCA 62.797 63.158 10.16 0.00 43.06 5.36
662 697 1.800805 CAGATCGCTCGCCCAATTAT 58.199 50.000 0.00 0.00 0.00 1.28
725 772 0.108520 CCTGCCTGCGCATTTTGAAT 60.109 50.000 12.24 0.00 46.11 2.57
766 817 9.997482 TGATTTAAACTGAACTCTGTGTTTTAC 57.003 29.630 0.00 0.00 39.30 2.01
877 955 9.590451 AACTTAATCATAATCAATTGTTGCCTG 57.410 29.630 5.13 0.00 0.00 4.85
880 958 6.778834 ATCATAATCAATTGTTGCCTGTGA 57.221 33.333 5.13 3.27 0.00 3.58
913 999 4.165372 AGTTCTACCAAGTTGAGGGTTTCA 59.835 41.667 3.87 0.00 38.60 2.69
922 1008 6.923508 CCAAGTTGAGGGTTTCATTAAGTTTC 59.076 38.462 3.87 0.00 35.27 2.78
958 1187 6.862209 TGTACTTCAGTTTTCTGTTTGCATT 58.138 32.000 0.00 0.00 46.98 3.56
1381 1614 6.245408 TGGCAAAATCTCCTTGTTGTATACT 58.755 36.000 4.17 0.00 0.00 2.12
1382 1615 6.374333 TGGCAAAATCTCCTTGTTGTATACTC 59.626 38.462 4.17 0.00 0.00 2.59
1383 1616 6.183360 GGCAAAATCTCCTTGTTGTATACTCC 60.183 42.308 4.17 0.00 0.00 3.85
1385 1618 6.893020 AAATCTCCTTGTTGTATACTCCCT 57.107 37.500 4.17 0.00 0.00 4.20
1386 1619 6.487299 AATCTCCTTGTTGTATACTCCCTC 57.513 41.667 4.17 0.00 0.00 4.30
1387 1620 4.287552 TCTCCTTGTTGTATACTCCCTCC 58.712 47.826 4.17 0.00 0.00 4.30
1389 1622 4.631234 TCCTTGTTGTATACTCCCTCCAT 58.369 43.478 4.17 0.00 0.00 3.41
1390 1623 4.654262 TCCTTGTTGTATACTCCCTCCATC 59.346 45.833 4.17 0.00 0.00 3.51
1391 1624 4.202367 CCTTGTTGTATACTCCCTCCATCC 60.202 50.000 4.17 0.00 0.00 3.51
1392 1625 3.314693 TGTTGTATACTCCCTCCATCCC 58.685 50.000 4.17 0.00 0.00 3.85
1395 1628 4.015617 TGTATACTCCCTCCATCCCAAA 57.984 45.455 4.17 0.00 0.00 3.28
1396 1629 4.376223 TGTATACTCCCTCCATCCCAAAA 58.624 43.478 4.17 0.00 0.00 2.44
1398 1631 6.154645 TGTATACTCCCTCCATCCCAAAATA 58.845 40.000 4.17 0.00 0.00 1.40
1399 1632 3.953542 ACTCCCTCCATCCCAAAATAC 57.046 47.619 0.00 0.00 0.00 1.89
1400 1633 3.474920 ACTCCCTCCATCCCAAAATACT 58.525 45.455 0.00 0.00 0.00 2.12
1402 1635 4.210331 CTCCCTCCATCCCAAAATACTTG 58.790 47.826 0.00 0.00 0.00 3.16
1403 1636 3.596046 TCCCTCCATCCCAAAATACTTGT 59.404 43.478 0.00 0.00 0.00 3.16
1404 1637 3.954258 CCCTCCATCCCAAAATACTTGTC 59.046 47.826 0.00 0.00 0.00 3.18
1405 1638 3.627577 CCTCCATCCCAAAATACTTGTCG 59.372 47.826 0.00 0.00 0.00 4.35
1407 1640 3.264706 TCCATCCCAAAATACTTGTCGGA 59.735 43.478 0.00 0.00 0.00 4.55
1408 1641 3.627577 CCATCCCAAAATACTTGTCGGAG 59.372 47.826 0.00 0.00 0.00 4.63
1409 1642 4.513442 CATCCCAAAATACTTGTCGGAGA 58.487 43.478 0.00 0.00 0.00 3.71
1410 1643 4.627284 TCCCAAAATACTTGTCGGAGAA 57.373 40.909 0.00 0.00 39.69 2.87
1411 1644 4.975631 TCCCAAAATACTTGTCGGAGAAA 58.024 39.130 0.00 0.00 39.69 2.52
1412 1645 5.566469 TCCCAAAATACTTGTCGGAGAAAT 58.434 37.500 0.00 0.00 39.69 2.17
1413 1646 5.414454 TCCCAAAATACTTGTCGGAGAAATG 59.586 40.000 0.00 0.00 39.69 2.32
1414 1647 5.414454 CCCAAAATACTTGTCGGAGAAATGA 59.586 40.000 0.00 0.00 39.69 2.57
1415 1648 6.095440 CCCAAAATACTTGTCGGAGAAATGAT 59.905 38.462 0.00 0.00 39.69 2.45
1416 1649 7.362920 CCCAAAATACTTGTCGGAGAAATGATT 60.363 37.037 0.00 0.00 39.69 2.57
1417 1650 8.673711 CCAAAATACTTGTCGGAGAAATGATTA 58.326 33.333 0.00 0.00 39.69 1.75
1466 1699 9.988815 AAATACATCTAGATACATCCACTTGTC 57.011 33.333 4.54 0.00 0.00 3.18
1467 1700 6.412362 ACATCTAGATACATCCACTTGTCC 57.588 41.667 4.54 0.00 0.00 4.02
1468 1701 5.010112 ACATCTAGATACATCCACTTGTCCG 59.990 44.000 4.54 0.00 0.00 4.79
1469 1702 4.788679 TCTAGATACATCCACTTGTCCGA 58.211 43.478 0.00 0.00 0.00 4.55
1470 1703 3.802948 AGATACATCCACTTGTCCGAC 57.197 47.619 0.00 0.00 0.00 4.79
1471 1704 3.096852 AGATACATCCACTTGTCCGACA 58.903 45.455 0.00 0.00 0.00 4.35
1472 1705 3.513912 AGATACATCCACTTGTCCGACAA 59.486 43.478 13.29 13.29 36.54 3.18
1482 1715 2.373540 TGTCCGACAAGTATTTCCGG 57.626 50.000 0.00 0.00 41.36 5.14
1483 1716 1.894466 TGTCCGACAAGTATTTCCGGA 59.106 47.619 0.00 0.00 45.74 5.14
1484 1717 2.660189 TCCGACAAGTATTTCCGGAC 57.340 50.000 1.83 0.00 43.47 4.79
1485 1718 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
1486 1719 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
1487 1720 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
1488 1721 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
1489 1722 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1490 1723 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1491 1724 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1492 1725 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1493 1726 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1494 1727 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1495 1728 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
1496 1729 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
1497 1730 0.982852 TCCGGACGGAGGGAGTACTA 60.983 60.000 9.76 0.00 39.76 1.82
1500 1733 1.878734 CGGACGGAGGGAGTACTATTC 59.121 57.143 0.00 0.00 0.00 1.75
1568 1802 7.110155 TCTATTCAAGGAATAACCAGTGGAAC 58.890 38.462 18.40 1.89 42.04 3.62
1608 1843 6.323996 TCACTCTTATTTCCTGTATCCGATGT 59.676 38.462 0.00 0.00 0.00 3.06
1618 1853 4.383118 CCTGTATCCGATGTTGGTCTTCTT 60.383 45.833 0.00 0.00 0.00 2.52
1625 1860 4.260907 CCGATGTTGGTCTTCTTATGCATG 60.261 45.833 10.16 0.00 0.00 4.06
1845 2081 1.560505 ATGGTTTGGGTTCTGGCATC 58.439 50.000 0.00 0.00 0.00 3.91
2577 2866 5.539955 ACCTGTTCTTATCATGCTTTTGGTT 59.460 36.000 0.00 0.00 0.00 3.67
2613 2902 4.094739 TCACAACACACACTGTTCTTGATG 59.905 41.667 0.00 0.00 41.50 3.07
2744 3033 6.000891 TCAAAGACATGGATTGAAGTTTCG 57.999 37.500 0.00 0.00 30.60 3.46
2750 3039 2.147958 TGGATTGAAGTTTCGGGTTCG 58.852 47.619 0.00 0.00 37.82 3.95
2873 3354 8.020777 TGACATATATCCTACCCGTTAAACAA 57.979 34.615 0.00 0.00 0.00 2.83
2922 3403 4.883083 TCTTACTGTTACTGGCTCTGTTG 58.117 43.478 0.00 0.00 0.00 3.33
2943 3424 8.124586 TGTTGCATTGTAAATTGTAGTTTGTG 57.875 30.769 0.00 0.00 0.00 3.33
2978 3618 6.455360 AAATGTTACTGATCGATGCCATTT 57.545 33.333 0.54 5.35 0.00 2.32
2983 3623 6.542005 TGTTACTGATCGATGCCATTTTGTAT 59.458 34.615 0.54 0.00 0.00 2.29
2987 3627 7.995289 ACTGATCGATGCCATTTTGTATTTTA 58.005 30.769 0.54 0.00 0.00 1.52
2988 3628 7.915397 ACTGATCGATGCCATTTTGTATTTTAC 59.085 33.333 0.54 0.00 0.00 2.01
2989 3629 7.766283 TGATCGATGCCATTTTGTATTTTACA 58.234 30.769 0.54 0.00 36.79 2.41
2992 3632 8.994429 TCGATGCCATTTTGTATTTTACATTT 57.006 26.923 0.00 0.00 38.68 2.32
3022 3664 9.888878 CATAGAATGCCACAAGAAATTACATAG 57.111 33.333 0.00 0.00 0.00 2.23
3033 3675 6.067217 AGAAATTACATAGACAAGGCTGGT 57.933 37.500 0.00 0.00 0.00 4.00
3034 3676 6.116126 AGAAATTACATAGACAAGGCTGGTC 58.884 40.000 14.44 14.44 35.50 4.02
3038 3680 3.944087 ACATAGACAAGGCTGGTCTTTC 58.056 45.455 28.63 0.00 42.77 2.62
3165 3934 8.656849 GTCTGAACAGTAACATGTTTAGTATGG 58.343 37.037 17.78 2.85 43.55 2.74
3248 4045 9.412460 AGCTGATTTTATAGATCATTGAACCAA 57.588 29.630 0.00 0.00 33.39 3.67
3287 4084 4.636206 AGGGACTTCGTTTGCAAGAATATC 59.364 41.667 0.00 2.39 27.25 1.63
3297 4094 5.901413 TTGCAAGAATATCTCTGAGGGAT 57.099 39.130 0.00 0.00 33.37 3.85
3416 4438 1.144298 TGCTAGGGGCGTATCTAGACA 59.856 52.381 0.00 0.00 45.43 3.41
3424 4446 5.601313 AGGGGCGTATCTAGACAAATCTAAA 59.399 40.000 0.00 0.00 36.98 1.85
3428 4450 7.441458 GGGCGTATCTAGACAAATCTAAAACAT 59.559 37.037 0.00 0.00 36.98 2.71
3525 4610 4.153958 TGCTTATAGTTGGTTTTGCACG 57.846 40.909 0.00 0.00 0.00 5.34
3532 4617 4.640789 AGTTGGTTTTGCACGTGAATAA 57.359 36.364 22.23 7.67 0.00 1.40
3674 4773 1.093159 CTGCTGCATTTGGAGGAGTC 58.907 55.000 11.55 0.00 44.53 3.36
3831 4930 1.902508 TCGGCTTCTGATCAAGGACTT 59.097 47.619 0.00 0.00 0.00 3.01
3832 4931 2.093973 TCGGCTTCTGATCAAGGACTTC 60.094 50.000 0.00 0.00 0.00 3.01
3857 4956 3.931907 TGGTGTTATTGCTAGCTGGAT 57.068 42.857 17.23 9.82 0.00 3.41
4046 5148 9.542462 GTTATCTTAGTAACCTGATATGTTGCA 57.458 33.333 0.00 0.00 31.69 4.08
4140 5243 1.000060 TCTGAATTTGCCAGCAGTTGC 60.000 47.619 0.00 0.00 42.49 4.17
4179 5282 3.270877 GGTTAACTGCATCCGAGAATGT 58.729 45.455 5.42 0.00 0.00 2.71
4206 5309 7.433680 TGCTCAGTAAAAATCGATATGCTAGA 58.566 34.615 0.00 0.00 0.00 2.43
4253 5356 1.136891 TGTCATAGTGATGGACGCCTG 59.863 52.381 0.00 0.00 33.49 4.85
4264 5367 4.036262 TGATGGACGCCTGCAAATTATTAC 59.964 41.667 0.00 0.00 0.00 1.89
4268 5371 4.573201 GGACGCCTGCAAATTATTACTACA 59.427 41.667 0.00 0.00 0.00 2.74
4269 5372 5.238650 GGACGCCTGCAAATTATTACTACAT 59.761 40.000 0.00 0.00 0.00 2.29
4270 5373 6.300354 ACGCCTGCAAATTATTACTACATC 57.700 37.500 0.00 0.00 0.00 3.06
4271 5374 5.238650 ACGCCTGCAAATTATTACTACATCC 59.761 40.000 0.00 0.00 0.00 3.51
4272 5375 5.470098 CGCCTGCAAATTATTACTACATCCT 59.530 40.000 0.00 0.00 0.00 3.24
4273 5376 6.649141 CGCCTGCAAATTATTACTACATCCTA 59.351 38.462 0.00 0.00 0.00 2.94
4274 5377 7.172532 CGCCTGCAAATTATTACTACATCCTAA 59.827 37.037 0.00 0.00 0.00 2.69
4287 5390 6.653989 ACTACATCCTAATTGAAGTTCTGGG 58.346 40.000 4.17 0.00 0.00 4.45
4293 5396 8.802267 CATCCTAATTGAAGTTCTGGGTTTTTA 58.198 33.333 4.17 0.00 0.00 1.52
4305 5408 8.318412 AGTTCTGGGTTTTTAAAACATCAAACT 58.682 29.630 20.17 20.19 31.12 2.66
4307 5410 8.710835 TCTGGGTTTTTAAAACATCAAACTTC 57.289 30.769 20.17 1.91 31.12 3.01
4308 5411 7.489757 TCTGGGTTTTTAAAACATCAAACTTCG 59.510 33.333 20.17 7.02 31.12 3.79
4393 5729 5.452078 TCCCAGATTGAATGAAACACAAC 57.548 39.130 0.00 0.00 0.00 3.32
4403 5739 4.771590 ATGAAACACAACGAAGCATCAT 57.228 36.364 0.00 0.00 0.00 2.45
4406 5742 2.975410 ACACAACGAAGCATCATGTG 57.025 45.000 18.07 18.07 43.45 3.21
4419 5755 4.398358 AGCATCATGTGTCCTTGAATCAAG 59.602 41.667 15.64 15.64 40.75 3.02
4424 5760 5.645067 TCATGTGTCCTTGAATCAAGATGAC 59.355 40.000 23.32 20.76 43.42 3.06
4426 5762 4.042062 TGTGTCCTTGAATCAAGATGACCT 59.958 41.667 23.32 0.00 43.42 3.85
4428 5764 3.944015 GTCCTTGAATCAAGATGACCTGG 59.056 47.826 23.32 5.98 43.42 4.45
4431 5767 4.324099 CCTTGAATCAAGATGACCTGGTCT 60.324 45.833 26.03 12.70 43.42 3.85
4432 5768 4.916041 TGAATCAAGATGACCTGGTCTT 57.084 40.909 26.03 20.39 35.15 3.01
4433 5769 5.246981 TGAATCAAGATGACCTGGTCTTT 57.753 39.130 26.03 14.48 32.60 2.52
4434 5770 5.005740 TGAATCAAGATGACCTGGTCTTTG 58.994 41.667 26.03 23.68 32.60 2.77
4435 5771 4.647564 ATCAAGATGACCTGGTCTTTGT 57.352 40.909 26.03 10.69 32.60 2.83
4436 5772 4.437682 TCAAGATGACCTGGTCTTTGTT 57.562 40.909 26.03 15.49 32.60 2.83
4437 5773 5.560722 TCAAGATGACCTGGTCTTTGTTA 57.439 39.130 26.03 6.57 32.60 2.41
4438 5774 5.551233 TCAAGATGACCTGGTCTTTGTTAG 58.449 41.667 26.03 11.07 32.60 2.34
4439 5775 5.071788 TCAAGATGACCTGGTCTTTGTTAGT 59.928 40.000 26.03 3.85 32.60 2.24
4440 5776 5.153950 AGATGACCTGGTCTTTGTTAGTC 57.846 43.478 26.03 11.47 33.15 2.59
4441 5777 4.841246 AGATGACCTGGTCTTTGTTAGTCT 59.159 41.667 26.03 13.16 33.15 3.24
4442 5778 4.336889 TGACCTGGTCTTTGTTAGTCTG 57.663 45.455 26.03 0.00 33.15 3.51
4443 5779 3.709653 TGACCTGGTCTTTGTTAGTCTGT 59.290 43.478 26.03 0.00 33.15 3.41
4444 5780 4.058817 GACCTGGTCTTTGTTAGTCTGTG 58.941 47.826 19.53 0.00 0.00 3.66
4445 5781 3.454812 ACCTGGTCTTTGTTAGTCTGTGT 59.545 43.478 0.00 0.00 0.00 3.72
4446 5782 4.080526 ACCTGGTCTTTGTTAGTCTGTGTT 60.081 41.667 0.00 0.00 0.00 3.32
4447 5783 4.511826 CCTGGTCTTTGTTAGTCTGTGTTC 59.488 45.833 0.00 0.00 0.00 3.18
4448 5784 5.353394 TGGTCTTTGTTAGTCTGTGTTCT 57.647 39.130 0.00 0.00 0.00 3.01
4449 5785 5.116180 TGGTCTTTGTTAGTCTGTGTTCTG 58.884 41.667 0.00 0.00 0.00 3.02
4450 5786 4.511826 GGTCTTTGTTAGTCTGTGTTCTGG 59.488 45.833 0.00 0.00 0.00 3.86
4451 5787 5.357257 GTCTTTGTTAGTCTGTGTTCTGGA 58.643 41.667 0.00 0.00 0.00 3.86
4452 5788 5.992217 GTCTTTGTTAGTCTGTGTTCTGGAT 59.008 40.000 0.00 0.00 0.00 3.41
4453 5789 6.146347 GTCTTTGTTAGTCTGTGTTCTGGATC 59.854 42.308 0.00 0.00 0.00 3.36
4454 5790 4.174411 TGTTAGTCTGTGTTCTGGATCG 57.826 45.455 0.00 0.00 0.00 3.69
4455 5791 3.056821 TGTTAGTCTGTGTTCTGGATCGG 60.057 47.826 0.00 0.00 0.00 4.18
4456 5792 0.247736 AGTCTGTGTTCTGGATCGGC 59.752 55.000 0.00 0.00 0.00 5.54
4457 5793 0.247736 GTCTGTGTTCTGGATCGGCT 59.752 55.000 0.00 0.00 0.00 5.52
4458 5794 0.976641 TCTGTGTTCTGGATCGGCTT 59.023 50.000 0.00 0.00 0.00 4.35
4459 5795 1.081892 CTGTGTTCTGGATCGGCTTG 58.918 55.000 0.00 0.00 0.00 4.01
4460 5796 0.321564 TGTGTTCTGGATCGGCTTGG 60.322 55.000 0.00 0.00 0.00 3.61
4461 5797 0.036388 GTGTTCTGGATCGGCTTGGA 60.036 55.000 0.00 0.00 0.00 3.53
4462 5798 0.911769 TGTTCTGGATCGGCTTGGAT 59.088 50.000 0.00 0.00 0.00 3.41
4478 5814 5.351740 GGCTTGGATTTAGTTAGTCTGTGTC 59.648 44.000 0.00 0.00 0.00 3.67
4512 5887 3.134804 AGGTTGGATCCTTCCGTTCTATG 59.865 47.826 14.23 0.00 45.89 2.23
4513 5888 2.872858 GTTGGATCCTTCCGTTCTATGC 59.127 50.000 14.23 0.00 45.89 3.14
4518 5893 4.443598 GGATCCTTCCGTTCTATGCTTCTT 60.444 45.833 3.84 0.00 30.72 2.52
4525 5900 5.487433 TCCGTTCTATGCTTCTTTTCATCA 58.513 37.500 0.00 0.00 0.00 3.07
4527 5902 5.261661 CGTTCTATGCTTCTTTTCATCAGC 58.738 41.667 0.00 0.00 0.00 4.26
4532 5907 1.201965 GCTTCTTTTCATCAGCGACGG 60.202 52.381 0.00 0.00 0.00 4.79
4537 5928 1.144969 TTTCATCAGCGACGGTTGTC 58.855 50.000 0.00 0.00 41.91 3.18
4548 5939 1.429825 CGGTTGTCGTTTTGGTGCA 59.570 52.632 0.00 0.00 0.00 4.57
4556 5947 2.933260 GTCGTTTTGGTGCATTGGTTTT 59.067 40.909 0.00 0.00 0.00 2.43
4589 5980 1.261619 GGCACAACGACTTTCTGACTG 59.738 52.381 0.00 0.00 0.00 3.51
4605 5999 5.116180 TCTGACTGTCTACAACAAGGTTTG 58.884 41.667 9.51 0.00 37.45 2.93
4609 6003 4.196193 CTGTCTACAACAAGGTTTGTCCA 58.804 43.478 0.00 0.00 44.59 4.02
4627 6021 1.373570 CAGATTCGGTGAAGAAGGGC 58.626 55.000 0.00 0.00 33.19 5.19
4628 6022 0.984230 AGATTCGGTGAAGAAGGGCA 59.016 50.000 0.00 0.00 33.19 5.36
4629 6023 1.351017 AGATTCGGTGAAGAAGGGCAA 59.649 47.619 0.00 0.00 33.19 4.52
4630 6024 2.025887 AGATTCGGTGAAGAAGGGCAAT 60.026 45.455 0.00 0.00 33.19 3.56
4631 6025 1.533625 TTCGGTGAAGAAGGGCAATG 58.466 50.000 0.00 0.00 0.00 2.82
4632 6026 0.690192 TCGGTGAAGAAGGGCAATGA 59.310 50.000 0.00 0.00 0.00 2.57
4633 6027 0.804989 CGGTGAAGAAGGGCAATGAC 59.195 55.000 0.00 0.00 0.00 3.06
4634 6028 0.804989 GGTGAAGAAGGGCAATGACG 59.195 55.000 0.00 0.00 0.00 4.35
4636 6030 0.400213 TGAAGAAGGGCAATGACGGT 59.600 50.000 0.00 0.00 0.00 4.83
4637 6031 0.804989 GAAGAAGGGCAATGACGGTG 59.195 55.000 0.00 0.00 0.00 4.94
4639 6033 1.303317 GAAGGGCAATGACGGTGGT 60.303 57.895 0.00 0.00 0.00 4.16
4640 6034 0.893727 GAAGGGCAATGACGGTGGTT 60.894 55.000 0.00 0.00 0.00 3.67
4641 6035 0.469144 AAGGGCAATGACGGTGGTTT 60.469 50.000 0.00 0.00 0.00 3.27
4643 6037 1.209127 GGCAATGACGGTGGTTTCG 59.791 57.895 0.00 0.00 0.00 3.46
4647 6041 0.322322 AATGACGGTGGTTTCGCCTA 59.678 50.000 0.00 0.00 41.26 3.93
4648 6042 0.322322 ATGACGGTGGTTTCGCCTAA 59.678 50.000 0.00 0.00 41.26 2.69
4650 6044 1.632948 GACGGTGGTTTCGCCTAAGC 61.633 60.000 0.00 0.00 41.26 3.09
4651 6045 1.375523 CGGTGGTTTCGCCTAAGCT 60.376 57.895 0.00 0.00 41.26 3.74
4652 6046 1.359459 CGGTGGTTTCGCCTAAGCTC 61.359 60.000 0.00 0.00 41.26 4.09
4653 6047 0.036294 GGTGGTTTCGCCTAAGCTCT 60.036 55.000 0.00 0.00 40.31 4.09
4654 6048 1.206371 GGTGGTTTCGCCTAAGCTCTA 59.794 52.381 0.00 0.00 40.31 2.43
4655 6049 2.158943 GGTGGTTTCGCCTAAGCTCTAT 60.159 50.000 0.00 0.00 40.31 1.98
4656 6050 2.866762 GTGGTTTCGCCTAAGCTCTATG 59.133 50.000 0.00 0.00 38.35 2.23
4657 6051 2.764010 TGGTTTCGCCTAAGCTCTATGA 59.236 45.455 0.00 0.00 38.35 2.15
4704 6099 5.527951 TCTTGTGTTGTTTGTATTGCCATC 58.472 37.500 0.00 0.00 0.00 3.51
4705 6100 5.301551 TCTTGTGTTGTTTGTATTGCCATCT 59.698 36.000 0.00 0.00 0.00 2.90
4706 6101 4.869215 TGTGTTGTTTGTATTGCCATCTG 58.131 39.130 0.00 0.00 0.00 2.90
4710 6105 4.782019 TGTTTGTATTGCCATCTGGTTC 57.218 40.909 0.00 0.00 37.57 3.62
4719 6114 4.149511 TGCCATCTGGTTCGATGAATAA 57.850 40.909 2.57 0.00 42.63 1.40
4770 6165 5.365314 ACAATTTTCAAAGTTTAGGGCCTCA 59.635 36.000 10.74 0.00 0.00 3.86
4781 6176 4.906747 TTAGGGCCTCATTTTGCATTTT 57.093 36.364 10.74 0.00 0.00 1.82
4785 6180 3.557686 GGGCCTCATTTTGCATTTTGTCT 60.558 43.478 0.84 0.00 0.00 3.41
4789 6184 4.321156 CCTCATTTTGCATTTTGTCTCGGA 60.321 41.667 0.00 0.00 0.00 4.55
4792 6187 0.881118 TTGCATTTTGTCTCGGAGCC 59.119 50.000 0.00 0.00 0.00 4.70
4794 6189 0.678048 GCATTTTGTCTCGGAGCCCT 60.678 55.000 0.00 0.00 0.00 5.19
4803 6198 1.762957 TCTCGGAGCCCTAAATTCCTG 59.237 52.381 0.00 0.00 0.00 3.86
4815 6210 0.974010 AATTCCTGGAGACGGCCGTA 60.974 55.000 34.36 15.48 34.42 4.02
4820 6215 1.716826 CTGGAGACGGCCGTAGTCTC 61.717 65.000 34.36 30.70 40.89 3.36
4821 6216 2.479750 GGAGACGGCCGTAGTCTCC 61.480 68.421 35.23 35.23 40.89 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.073768 GAGAGAGGAACGCTGTTCGC 61.074 60.000 12.88 8.95 39.71 4.70
38 39 0.456995 GGAGAGAGGAACGCTGTTCG 60.457 60.000 12.88 0.00 39.71 3.95
39 40 0.892063 AGGAGAGAGGAACGCTGTTC 59.108 55.000 11.42 11.42 39.71 3.18
46 47 1.995646 GACGCCGAGGAGAGAGGAAC 61.996 65.000 0.00 0.00 0.00 3.62
139 140 5.824624 TGAATCTGAAACTCTGAAACTGCTT 59.175 36.000 0.00 0.00 0.00 3.91
140 141 5.371526 TGAATCTGAAACTCTGAAACTGCT 58.628 37.500 0.00 0.00 0.00 4.24
171 172 4.625742 TCACAATTCTAACTAGCAACGAGC 59.374 41.667 0.00 0.00 46.19 5.03
172 173 6.893958 ATCACAATTCTAACTAGCAACGAG 57.106 37.500 0.00 0.00 0.00 4.18
173 174 7.411480 CGAAATCACAATTCTAACTAGCAACGA 60.411 37.037 0.00 0.00 0.00 3.85
181 182 4.142902 CGCCACGAAATCACAATTCTAACT 60.143 41.667 0.00 0.00 0.00 2.24
192 193 1.529226 AACCAATCGCCACGAAATCA 58.471 45.000 0.00 0.00 39.99 2.57
200 201 3.388308 CAAACAATCAAACCAATCGCCA 58.612 40.909 0.00 0.00 0.00 5.69
201 202 2.157474 GCAAACAATCAAACCAATCGCC 59.843 45.455 0.00 0.00 0.00 5.54
202 203 2.157474 GGCAAACAATCAAACCAATCGC 59.843 45.455 0.00 0.00 0.00 4.58
208 209 1.866601 GCACTGGCAAACAATCAAACC 59.133 47.619 0.00 0.00 40.72 3.27
209 210 2.540931 CAGCACTGGCAAACAATCAAAC 59.459 45.455 0.00 0.00 44.61 2.93
210 211 2.483363 CCAGCACTGGCAAACAATCAAA 60.483 45.455 3.23 0.00 44.73 2.69
211 212 1.068895 CCAGCACTGGCAAACAATCAA 59.931 47.619 3.23 0.00 44.73 2.57
212 213 0.675083 CCAGCACTGGCAAACAATCA 59.325 50.000 3.23 0.00 44.73 2.57
213 214 3.502237 CCAGCACTGGCAAACAATC 57.498 52.632 3.23 0.00 44.73 2.67
260 261 4.081365 TCTGCAATTCTTACATACCACCGA 60.081 41.667 0.00 0.00 0.00 4.69
271 272 5.221303 GCAAATATGGGCTCTGCAATTCTTA 60.221 40.000 0.00 0.00 33.19 2.10
274 275 3.069158 AGCAAATATGGGCTCTGCAATTC 59.931 43.478 0.00 0.00 34.76 2.17
277 278 2.148446 AGCAAATATGGGCTCTGCAA 57.852 45.000 0.00 0.00 34.76 4.08
280 281 8.800332 AGATAAATTTAGCAAATATGGGCTCTG 58.200 33.333 15.37 0.00 41.41 3.35
281 282 8.800332 CAGATAAATTTAGCAAATATGGGCTCT 58.200 33.333 15.37 0.58 41.41 4.09
282 283 8.031277 CCAGATAAATTTAGCAAATATGGGCTC 58.969 37.037 15.37 0.00 41.41 4.70
284 285 6.591448 GCCAGATAAATTTAGCAAATATGGGC 59.409 38.462 15.37 11.30 0.00 5.36
285 286 7.669427 TGCCAGATAAATTTAGCAAATATGGG 58.331 34.615 15.37 6.28 0.00 4.00
287 288 9.362539 GGATGCCAGATAAATTTAGCAAATATG 57.637 33.333 15.37 4.75 33.35 1.78
288 289 9.092338 TGGATGCCAGATAAATTTAGCAAATAT 57.908 29.630 15.37 4.96 33.35 1.28
291 292 6.788598 TGGATGCCAGATAAATTTAGCAAA 57.211 33.333 15.37 2.50 33.35 3.68
314 321 1.676014 CCCGACGAATGAGAAAAGCCT 60.676 52.381 0.00 0.00 0.00 4.58
316 323 1.722011 TCCCGACGAATGAGAAAAGC 58.278 50.000 0.00 0.00 0.00 3.51
324 331 1.341531 AGCCTAGAATCCCGACGAATG 59.658 52.381 0.00 0.00 0.00 2.67
325 332 1.341531 CAGCCTAGAATCCCGACGAAT 59.658 52.381 0.00 0.00 0.00 3.34
381 404 7.611467 TGACAAATATGAAGGCTAACAACTCAT 59.389 33.333 2.94 2.94 0.00 2.90
393 416 9.439500 AATTTTCACCAATGACAAATATGAAGG 57.561 29.630 0.00 0.00 33.38 3.46
399 422 9.689976 CACTGTAATTTTCACCAATGACAAATA 57.310 29.630 0.00 0.00 33.38 1.40
400 423 7.656948 CCACTGTAATTTTCACCAATGACAAAT 59.343 33.333 0.00 0.00 33.38 2.32
401 424 6.983307 CCACTGTAATTTTCACCAATGACAAA 59.017 34.615 0.00 0.00 33.38 2.83
402 425 6.511416 CCACTGTAATTTTCACCAATGACAA 58.489 36.000 0.00 0.00 33.38 3.18
403 426 5.508825 GCCACTGTAATTTTCACCAATGACA 60.509 40.000 0.00 0.00 33.38 3.58
404 427 4.923281 GCCACTGTAATTTTCACCAATGAC 59.077 41.667 0.00 0.00 33.38 3.06
405 428 4.832266 AGCCACTGTAATTTTCACCAATGA 59.168 37.500 0.00 0.00 0.00 2.57
415 438 7.364497 GGGAGTAGTAGTTAGCCACTGTAATTT 60.364 40.741 0.00 0.00 35.97 1.82
417 440 5.597594 GGGAGTAGTAGTTAGCCACTGTAAT 59.402 44.000 0.00 0.00 35.97 1.89
441 464 3.387050 ACAACTTTATACTAGGGCCGGAG 59.613 47.826 5.05 1.82 0.00 4.63
442 465 3.377573 ACAACTTTATACTAGGGCCGGA 58.622 45.455 5.05 0.00 0.00 5.14
443 466 3.832615 ACAACTTTATACTAGGGCCGG 57.167 47.619 0.00 0.00 0.00 6.13
444 467 4.625028 GGTACAACTTTATACTAGGGCCG 58.375 47.826 0.00 0.00 0.00 6.13
445 468 4.502087 CCGGTACAACTTTATACTAGGGCC 60.502 50.000 0.00 0.00 0.00 5.80
446 469 4.342092 TCCGGTACAACTTTATACTAGGGC 59.658 45.833 0.00 0.00 0.00 5.19
447 470 5.595952 ACTCCGGTACAACTTTATACTAGGG 59.404 44.000 0.00 0.00 0.00 3.53
448 471 6.705863 ACTCCGGTACAACTTTATACTAGG 57.294 41.667 0.00 0.00 0.00 3.02
449 472 7.765307 TCAACTCCGGTACAACTTTATACTAG 58.235 38.462 0.00 0.00 0.00 2.57
450 473 7.611467 TCTCAACTCCGGTACAACTTTATACTA 59.389 37.037 0.00 0.00 0.00 1.82
451 474 6.435277 TCTCAACTCCGGTACAACTTTATACT 59.565 38.462 0.00 0.00 0.00 2.12
452 475 6.529477 GTCTCAACTCCGGTACAACTTTATAC 59.471 42.308 0.00 0.00 0.00 1.47
453 476 6.209192 TGTCTCAACTCCGGTACAACTTTATA 59.791 38.462 0.00 0.00 0.00 0.98
454 477 5.011329 TGTCTCAACTCCGGTACAACTTTAT 59.989 40.000 0.00 0.00 0.00 1.40
455 478 4.341806 TGTCTCAACTCCGGTACAACTTTA 59.658 41.667 0.00 0.00 0.00 1.85
456 479 3.133362 TGTCTCAACTCCGGTACAACTTT 59.867 43.478 0.00 0.00 0.00 2.66
457 480 2.696707 TGTCTCAACTCCGGTACAACTT 59.303 45.455 0.00 0.00 0.00 2.66
458 481 2.035576 GTGTCTCAACTCCGGTACAACT 59.964 50.000 0.00 0.00 0.00 3.16
459 482 2.035576 AGTGTCTCAACTCCGGTACAAC 59.964 50.000 0.00 0.00 0.00 3.32
460 483 2.313317 AGTGTCTCAACTCCGGTACAA 58.687 47.619 0.00 0.00 0.00 2.41
461 484 1.991121 AGTGTCTCAACTCCGGTACA 58.009 50.000 0.00 0.00 0.00 2.90
462 485 4.715527 ATAAGTGTCTCAACTCCGGTAC 57.284 45.455 0.00 0.00 0.00 3.34
463 486 5.733620 AAATAAGTGTCTCAACTCCGGTA 57.266 39.130 0.00 0.00 0.00 4.02
464 487 4.618920 AAATAAGTGTCTCAACTCCGGT 57.381 40.909 0.00 0.00 0.00 5.28
465 488 4.154195 CCAAAATAAGTGTCTCAACTCCGG 59.846 45.833 0.00 0.00 0.00 5.14
466 489 4.154195 CCCAAAATAAGTGTCTCAACTCCG 59.846 45.833 0.00 0.00 0.00 4.63
467 490 5.181433 GTCCCAAAATAAGTGTCTCAACTCC 59.819 44.000 0.00 0.00 0.00 3.85
468 491 5.107065 CGTCCCAAAATAAGTGTCTCAACTC 60.107 44.000 0.00 0.00 0.00 3.01
469 492 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
470 493 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
471 494 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
472 495 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
473 496 3.683340 GTCCGTCCCAAAATAAGTGTCTC 59.317 47.826 0.00 0.00 0.00 3.36
474 497 3.671716 GTCCGTCCCAAAATAAGTGTCT 58.328 45.455 0.00 0.00 0.00 3.41
475 498 2.414138 CGTCCGTCCCAAAATAAGTGTC 59.586 50.000 0.00 0.00 0.00 3.67
476 499 2.419667 CGTCCGTCCCAAAATAAGTGT 58.580 47.619 0.00 0.00 0.00 3.55
477 500 1.735571 CCGTCCGTCCCAAAATAAGTG 59.264 52.381 0.00 0.00 0.00 3.16
478 501 1.624813 TCCGTCCGTCCCAAAATAAGT 59.375 47.619 0.00 0.00 0.00 2.24
479 502 2.277084 CTCCGTCCGTCCCAAAATAAG 58.723 52.381 0.00 0.00 0.00 1.73
480 503 1.624813 ACTCCGTCCGTCCCAAAATAA 59.375 47.619 0.00 0.00 0.00 1.40
481 504 1.269012 ACTCCGTCCGTCCCAAAATA 58.731 50.000 0.00 0.00 0.00 1.40
482 505 1.066645 GTACTCCGTCCGTCCCAAAAT 60.067 52.381 0.00 0.00 0.00 1.82
483 506 0.318120 GTACTCCGTCCGTCCCAAAA 59.682 55.000 0.00 0.00 0.00 2.44
484 507 0.540365 AGTACTCCGTCCGTCCCAAA 60.540 55.000 0.00 0.00 0.00 3.28
485 508 0.327924 TAGTACTCCGTCCGTCCCAA 59.672 55.000 0.00 0.00 0.00 4.12
486 509 0.107508 CTAGTACTCCGTCCGTCCCA 60.108 60.000 0.00 0.00 0.00 4.37
487 510 0.107459 ACTAGTACTCCGTCCGTCCC 60.107 60.000 0.00 0.00 0.00 4.46
488 511 1.743996 AACTAGTACTCCGTCCGTCC 58.256 55.000 0.00 0.00 0.00 4.79
489 512 3.438434 AGAAAACTAGTACTCCGTCCGTC 59.562 47.826 0.00 0.00 0.00 4.79
490 513 3.416156 AGAAAACTAGTACTCCGTCCGT 58.584 45.455 0.00 0.00 0.00 4.69
491 514 3.181502 GGAGAAAACTAGTACTCCGTCCG 60.182 52.174 20.23 0.00 39.27 4.79
492 515 4.368874 GGAGAAAACTAGTACTCCGTCC 57.631 50.000 20.23 10.41 39.27 4.79
496 519 3.760684 TGGTCGGAGAAAACTAGTACTCC 59.239 47.826 22.82 22.82 43.58 3.85
497 520 5.382618 TTGGTCGGAGAAAACTAGTACTC 57.617 43.478 0.00 13.01 39.69 2.59
498 521 5.997384 ATTGGTCGGAGAAAACTAGTACT 57.003 39.130 0.00 0.00 39.69 2.73
499 522 7.437565 GGATAATTGGTCGGAGAAAACTAGTAC 59.562 40.741 0.00 0.00 39.69 2.73
500 523 7.495055 GGATAATTGGTCGGAGAAAACTAGTA 58.505 38.462 0.00 0.00 39.69 1.82
501 524 6.346896 GGATAATTGGTCGGAGAAAACTAGT 58.653 40.000 0.00 0.00 39.69 2.57
516 539 1.593196 ATCACGCACCGGATAATTGG 58.407 50.000 9.46 0.00 0.00 3.16
524 547 0.179100 AGAGATGAATCACGCACCGG 60.179 55.000 0.00 0.00 0.00 5.28
530 553 5.452623 CAGTAACGTACAGAGATGAATCACG 59.547 44.000 0.00 0.00 0.00 4.35
547 570 4.703645 TCTCCTGTTCATCTCAGTAACG 57.296 45.455 0.00 0.00 0.00 3.18
560 583 7.542025 GCAAATATCTGAATTGTTCTCCTGTT 58.458 34.615 0.00 0.00 0.00 3.16
567 590 8.792831 ATGATTCGCAAATATCTGAATTGTTC 57.207 30.769 0.00 0.00 31.56 3.18
571 594 8.737175 AGCATATGATTCGCAAATATCTGAATT 58.263 29.630 6.97 0.00 31.56 2.17
594 617 5.664294 ACCAATCTGCATGAAATAAAGCA 57.336 34.783 0.00 0.00 35.43 3.91
605 628 2.686915 GCTTGCTAGAACCAATCTGCAT 59.313 45.455 0.00 0.00 39.91 3.96
646 669 1.070758 ACAGATAATTGGGCGAGCGAT 59.929 47.619 0.00 0.00 0.00 4.58
687 725 4.151335 GCAGGATCTATGTTTGCTACATCG 59.849 45.833 8.07 3.70 44.15 3.84
696 734 1.959042 CGCAGGCAGGATCTATGTTT 58.041 50.000 0.00 0.00 0.00 2.83
725 772 7.388776 CAGTTTAAATCATCACAGGAGTCTTGA 59.611 37.037 9.56 0.80 0.00 3.02
766 817 7.555195 AGGGTACGGTAAGATTAAAATTCAAGG 59.445 37.037 0.00 0.00 0.00 3.61
779 830 7.844493 AACATATATTCAGGGTACGGTAAGA 57.156 36.000 0.00 0.00 0.00 2.10
785 836 8.827177 ACATTGTAACATATATTCAGGGTACG 57.173 34.615 0.00 0.00 0.00 3.67
877 955 9.765795 AACTTGGTAGAACTAATATAGCATCAC 57.234 33.333 0.00 0.00 0.00 3.06
880 958 9.988815 CTCAACTTGGTAGAACTAATATAGCAT 57.011 33.333 0.00 0.00 0.00 3.79
922 1008 7.745620 AAACTGAAGTACAAAGTAATCTGGG 57.254 36.000 0.00 0.00 0.00 4.45
1086 1315 7.987458 ACAGTGTAGATGAGTTTTTCTCTGAAA 59.013 33.333 0.00 0.00 43.13 2.69
1110 1339 8.390921 ACTAGGAAAATGAAGAGGGAAATAACA 58.609 33.333 0.00 0.00 0.00 2.41
1381 1614 3.596046 ACAAGTATTTTGGGATGGAGGGA 59.404 43.478 0.00 0.00 0.00 4.20
1382 1615 3.954258 GACAAGTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
1383 1616 3.627577 CGACAAGTATTTTGGGATGGAGG 59.372 47.826 0.00 0.00 0.00 4.30
1385 1618 3.264706 TCCGACAAGTATTTTGGGATGGA 59.735 43.478 0.00 0.00 0.00 3.41
1386 1619 3.616219 TCCGACAAGTATTTTGGGATGG 58.384 45.455 0.00 0.00 0.00 3.51
1387 1620 4.513442 TCTCCGACAAGTATTTTGGGATG 58.487 43.478 0.00 0.00 0.00 3.51
1389 1622 4.627284 TTCTCCGACAAGTATTTTGGGA 57.373 40.909 0.00 0.00 0.00 4.37
1390 1623 5.414454 TCATTTCTCCGACAAGTATTTTGGG 59.586 40.000 0.00 0.00 0.00 4.12
1391 1624 6.494893 TCATTTCTCCGACAAGTATTTTGG 57.505 37.500 0.00 0.00 0.00 3.28
1440 1673 9.988815 GACAAGTGGATGTATCTAGATGTATTT 57.011 33.333 15.79 0.00 32.57 1.40
1441 1674 8.589338 GGACAAGTGGATGTATCTAGATGTATT 58.411 37.037 15.79 0.00 32.57 1.89
1442 1675 7.094162 CGGACAAGTGGATGTATCTAGATGTAT 60.094 40.741 15.79 9.11 32.57 2.29
1443 1676 6.206829 CGGACAAGTGGATGTATCTAGATGTA 59.793 42.308 15.79 4.44 32.57 2.29
1444 1677 5.010112 CGGACAAGTGGATGTATCTAGATGT 59.990 44.000 15.79 1.67 32.57 3.06
1445 1678 5.241728 TCGGACAAGTGGATGTATCTAGATG 59.758 44.000 15.79 0.00 32.57 2.90
1446 1679 5.241949 GTCGGACAAGTGGATGTATCTAGAT 59.758 44.000 10.73 10.73 32.57 1.98
1447 1680 4.579340 GTCGGACAAGTGGATGTATCTAGA 59.421 45.833 2.62 0.00 32.57 2.43
1448 1681 4.338400 TGTCGGACAAGTGGATGTATCTAG 59.662 45.833 8.68 0.00 32.57 2.43
1449 1682 4.274978 TGTCGGACAAGTGGATGTATCTA 58.725 43.478 8.68 0.00 32.57 1.98
1450 1683 3.096852 TGTCGGACAAGTGGATGTATCT 58.903 45.455 8.68 0.00 32.57 1.98
1451 1684 3.520290 TGTCGGACAAGTGGATGTATC 57.480 47.619 8.68 0.00 32.57 2.24
1452 1685 3.973206 TTGTCGGACAAGTGGATGTAT 57.027 42.857 19.07 0.00 32.34 2.29
1462 1695 2.299582 TCCGGAAATACTTGTCGGACAA 59.700 45.455 21.30 21.30 43.84 3.18
1463 1696 1.894466 TCCGGAAATACTTGTCGGACA 59.106 47.619 0.00 6.76 43.84 4.02
1464 1697 2.660189 TCCGGAAATACTTGTCGGAC 57.340 50.000 0.00 0.00 43.84 4.79
1465 1698 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
1466 1699 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
1467 1700 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
1468 1701 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1469 1702 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1470 1703 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1471 1704 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1472 1705 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1473 1706 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1474 1707 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1475 1708 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1476 1709 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1477 1710 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1478 1711 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
1479 1712 0.110104 ATAGTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
1480 1713 1.878734 GAATAGTACTCCCTCCGTCCG 59.121 57.143 0.00 0.00 0.00 4.79
1481 1714 2.941480 TGAATAGTACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
1482 1715 4.583489 TCAATGAATAGTACTCCCTCCGTC 59.417 45.833 0.00 0.00 0.00 4.79
1483 1716 4.543689 TCAATGAATAGTACTCCCTCCGT 58.456 43.478 0.00 0.00 0.00 4.69
1484 1717 5.730296 ATCAATGAATAGTACTCCCTCCG 57.270 43.478 0.00 0.00 0.00 4.63
1485 1718 8.598041 ACATAATCAATGAATAGTACTCCCTCC 58.402 37.037 0.00 0.00 39.07 4.30
1513 1746 8.311395 AGACTTTGTACTGATCAGATTATGGA 57.689 34.615 29.27 7.59 0.00 3.41
1562 1796 6.881602 AGTGAGGAATCTTGAATTAGTTCCAC 59.118 38.462 5.38 0.00 40.56 4.02
1574 1809 7.108847 ACAGGAAATAAGAGTGAGGAATCTTG 58.891 38.462 0.00 0.00 36.47 3.02
1608 1843 4.227300 AGGTACCATGCATAAGAAGACCAA 59.773 41.667 15.94 0.00 0.00 3.67
1618 1853 6.953101 TGAGTAAGAAAAGGTACCATGCATA 58.047 36.000 15.94 0.00 0.00 3.14
1625 1860 5.880887 CCATTCCTGAGTAAGAAAAGGTACC 59.119 44.000 2.73 2.73 0.00 3.34
1845 2081 5.188327 TGTTGGTAGCGATGAATAGAGAG 57.812 43.478 0.00 0.00 0.00 3.20
2328 2571 7.038154 ACAGCAATTTAGAACAAAAGCACTA 57.962 32.000 0.00 0.00 0.00 2.74
2613 2902 7.174253 TGGTTTCCAACATGTTCAGATAAGTAC 59.826 37.037 8.48 3.22 0.00 2.73
2639 2928 1.965643 ACAACATCAGCCAAACTGCAT 59.034 42.857 0.00 0.00 46.76 3.96
2750 3039 0.175760 TAGCAACATCCCTCGCTGAC 59.824 55.000 0.00 0.00 35.93 3.51
2845 3326 8.985805 GTTTAACGGGTAGGATATATGTCAAAG 58.014 37.037 1.63 0.00 0.00 2.77
2850 3331 7.929785 CACTTGTTTAACGGGTAGGATATATGT 59.070 37.037 0.00 0.00 0.00 2.29
2856 3337 3.583966 TCCACTTGTTTAACGGGTAGGAT 59.416 43.478 0.00 0.00 0.00 3.24
2873 3354 5.934781 AGATGAAAGAACTTCACTTCCACT 58.065 37.500 0.00 0.00 46.80 4.00
2922 3403 6.761731 TGCACAAACTACAATTTACAATGC 57.238 33.333 0.00 0.00 0.00 3.56
2983 3623 7.397476 TGTGGCATTCTATGGGTAAATGTAAAA 59.603 33.333 0.00 0.00 33.82 1.52
2987 3627 4.865905 TGTGGCATTCTATGGGTAAATGT 58.134 39.130 0.00 0.00 33.82 2.71
2988 3628 5.593909 TCTTGTGGCATTCTATGGGTAAATG 59.406 40.000 0.00 0.00 34.30 2.32
2989 3629 5.765510 TCTTGTGGCATTCTATGGGTAAAT 58.234 37.500 0.00 0.00 0.00 1.40
2992 3632 4.853468 TTCTTGTGGCATTCTATGGGTA 57.147 40.909 0.00 0.00 0.00 3.69
2993 3633 3.737559 TTCTTGTGGCATTCTATGGGT 57.262 42.857 0.00 0.00 0.00 4.51
2994 3634 5.603170 AATTTCTTGTGGCATTCTATGGG 57.397 39.130 0.00 0.00 0.00 4.00
3001 3643 7.701539 TGTCTATGTAATTTCTTGTGGCATT 57.298 32.000 0.00 0.00 0.00 3.56
3022 3664 1.149148 GACGAAAGACCAGCCTTGTC 58.851 55.000 0.00 0.00 0.00 3.18
3033 3675 3.068732 CCTGCATCATAGAGGACGAAAGA 59.931 47.826 0.00 0.00 0.00 2.52
3034 3676 3.068732 TCCTGCATCATAGAGGACGAAAG 59.931 47.826 0.00 0.00 30.58 2.62
3038 3680 2.824936 AGATCCTGCATCATAGAGGACG 59.175 50.000 0.00 0.00 38.73 4.79
3165 3934 6.338146 TCGTATGATAAAGCTATATGGTGCC 58.662 40.000 0.00 0.00 0.00 5.01
3205 3974 7.934855 AATCAGCTGTAGATTCTTCATTTGT 57.065 32.000 14.67 0.00 30.16 2.83
3243 4040 7.393515 GTCCCTTGAAGACTAATGTTATTGGTT 59.606 37.037 0.00 0.00 0.00 3.67
3248 4045 7.042335 CGAAGTCCCTTGAAGACTAATGTTAT 58.958 38.462 0.00 0.00 43.77 1.89
3272 4069 4.272018 CCCTCAGAGATATTCTTGCAAACG 59.728 45.833 0.00 0.00 32.41 3.60
3287 4084 6.926272 GCACTGTAAACTAATATCCCTCAGAG 59.074 42.308 0.00 0.00 0.00 3.35
3297 4094 9.509956 ACAAACTAATGGCACTGTAAACTAATA 57.490 29.630 0.00 0.00 0.00 0.98
3424 4446 4.844085 TCCCTCCGATCCATATTACATGTT 59.156 41.667 2.30 0.00 0.00 2.71
3428 4450 4.127918 ACTCCCTCCGATCCATATTACA 57.872 45.455 0.00 0.00 0.00 2.41
3532 4617 1.409427 GGGTAGCTCTTGCGTAGTGAT 59.591 52.381 0.00 0.00 45.42 3.06
3674 4773 4.824166 GTCAGCGCGCCAATGCAG 62.824 66.667 30.33 9.25 37.32 4.41
3831 4930 5.764686 CCAGCTAGCAATAACACCATATTGA 59.235 40.000 18.83 0.00 43.05 2.57
3832 4931 5.764686 TCCAGCTAGCAATAACACCATATTG 59.235 40.000 18.83 0.48 43.19 1.90
3857 4956 1.804151 GTATCACGGCTTGCAACAAGA 59.196 47.619 11.38 0.00 0.00 3.02
3920 5022 1.654137 GCGCCTCAAAACACACACG 60.654 57.895 0.00 0.00 0.00 4.49
4080 5183 3.119849 CGGAGGATTGCCACAAAGTAAAG 60.120 47.826 0.00 0.00 36.29 1.85
4084 5187 0.110486 ACGGAGGATTGCCACAAAGT 59.890 50.000 0.00 0.00 36.29 2.66
4085 5188 2.009774 CTACGGAGGATTGCCACAAAG 58.990 52.381 0.00 0.00 36.29 2.77
4179 5282 6.283694 AGCATATCGATTTTTACTGAGCAGA 58.716 36.000 1.71 0.00 0.00 4.26
4206 5309 4.633126 CGAGTTGGAATCATGTTCAGTCAT 59.367 41.667 9.31 0.00 0.00 3.06
4264 5367 6.653989 ACCCAGAACTTCAATTAGGATGTAG 58.346 40.000 0.00 0.00 0.00 2.74
4268 5371 7.855784 AAAAACCCAGAACTTCAATTAGGAT 57.144 32.000 0.00 0.00 0.00 3.24
4269 5372 8.770010 TTAAAAACCCAGAACTTCAATTAGGA 57.230 30.769 0.00 0.00 0.00 2.94
4270 5373 9.825109 TTTTAAAAACCCAGAACTTCAATTAGG 57.175 29.630 0.00 0.00 0.00 2.69
4273 5376 9.679661 ATGTTTTAAAAACCCAGAACTTCAATT 57.320 25.926 1.31 0.00 0.00 2.32
4274 5377 9.325198 GATGTTTTAAAAACCCAGAACTTCAAT 57.675 29.630 1.31 0.00 0.00 2.57
4282 5385 7.489757 CGAAGTTTGATGTTTTAAAAACCCAGA 59.510 33.333 1.31 0.00 33.89 3.86
4359 5467 1.304891 ATCTGGGAATCGGGGGAAAA 58.695 50.000 0.00 0.00 0.00 2.29
4360 5468 1.064017 CAATCTGGGAATCGGGGGAAA 60.064 52.381 0.00 0.00 0.00 3.13
4363 5471 0.550914 TTCAATCTGGGAATCGGGGG 59.449 55.000 0.00 0.00 0.00 5.40
4393 5729 2.349590 TCAAGGACACATGATGCTTCG 58.650 47.619 0.00 0.39 0.00 3.79
4403 5739 4.042062 AGGTCATCTTGATTCAAGGACACA 59.958 41.667 24.66 10.89 41.33 3.72
4406 5742 3.944015 CCAGGTCATCTTGATTCAAGGAC 59.056 47.826 22.86 20.93 41.33 3.85
4419 5755 4.932200 CAGACTAACAAAGACCAGGTCATC 59.068 45.833 22.31 5.84 34.60 2.92
4424 5760 4.073293 ACACAGACTAACAAAGACCAGG 57.927 45.455 0.00 0.00 0.00 4.45
4426 5762 5.116180 CAGAACACAGACTAACAAAGACCA 58.884 41.667 0.00 0.00 0.00 4.02
4428 5764 5.357257 TCCAGAACACAGACTAACAAAGAC 58.643 41.667 0.00 0.00 0.00 3.01
4431 5767 4.988540 CGATCCAGAACACAGACTAACAAA 59.011 41.667 0.00 0.00 0.00 2.83
4432 5768 4.556233 CGATCCAGAACACAGACTAACAA 58.444 43.478 0.00 0.00 0.00 2.83
4433 5769 3.056821 CCGATCCAGAACACAGACTAACA 60.057 47.826 0.00 0.00 0.00 2.41
4434 5770 3.512680 CCGATCCAGAACACAGACTAAC 58.487 50.000 0.00 0.00 0.00 2.34
4435 5771 2.094182 GCCGATCCAGAACACAGACTAA 60.094 50.000 0.00 0.00 0.00 2.24
4436 5772 1.476891 GCCGATCCAGAACACAGACTA 59.523 52.381 0.00 0.00 0.00 2.59
4437 5773 0.247736 GCCGATCCAGAACACAGACT 59.752 55.000 0.00 0.00 0.00 3.24
4438 5774 0.247736 AGCCGATCCAGAACACAGAC 59.752 55.000 0.00 0.00 0.00 3.51
4439 5775 0.976641 AAGCCGATCCAGAACACAGA 59.023 50.000 0.00 0.00 0.00 3.41
4440 5776 1.081892 CAAGCCGATCCAGAACACAG 58.918 55.000 0.00 0.00 0.00 3.66
4441 5777 0.321564 CCAAGCCGATCCAGAACACA 60.322 55.000 0.00 0.00 0.00 3.72
4442 5778 0.036388 TCCAAGCCGATCCAGAACAC 60.036 55.000 0.00 0.00 0.00 3.32
4443 5779 0.911769 ATCCAAGCCGATCCAGAACA 59.088 50.000 0.00 0.00 0.00 3.18
4444 5780 2.044123 AATCCAAGCCGATCCAGAAC 57.956 50.000 0.00 0.00 0.00 3.01
4445 5781 2.806945 AAATCCAAGCCGATCCAGAA 57.193 45.000 0.00 0.00 0.00 3.02
4446 5782 2.771943 ACTAAATCCAAGCCGATCCAGA 59.228 45.455 0.00 0.00 0.00 3.86
4447 5783 3.199880 ACTAAATCCAAGCCGATCCAG 57.800 47.619 0.00 0.00 0.00 3.86
4448 5784 3.644966 AACTAAATCCAAGCCGATCCA 57.355 42.857 0.00 0.00 0.00 3.41
4449 5785 4.704965 ACTAACTAAATCCAAGCCGATCC 58.295 43.478 0.00 0.00 0.00 3.36
4450 5786 5.463724 CAGACTAACTAAATCCAAGCCGATC 59.536 44.000 0.00 0.00 0.00 3.69
4451 5787 5.104900 ACAGACTAACTAAATCCAAGCCGAT 60.105 40.000 0.00 0.00 0.00 4.18
4452 5788 4.222145 ACAGACTAACTAAATCCAAGCCGA 59.778 41.667 0.00 0.00 0.00 5.54
4453 5789 4.330074 CACAGACTAACTAAATCCAAGCCG 59.670 45.833 0.00 0.00 0.00 5.52
4454 5790 5.246307 ACACAGACTAACTAAATCCAAGCC 58.754 41.667 0.00 0.00 0.00 4.35
4455 5791 5.351740 GGACACAGACTAACTAAATCCAAGC 59.648 44.000 0.00 0.00 0.00 4.01
4456 5792 5.577164 CGGACACAGACTAACTAAATCCAAG 59.423 44.000 0.00 0.00 0.00 3.61
4457 5793 5.011329 ACGGACACAGACTAACTAAATCCAA 59.989 40.000 0.00 0.00 0.00 3.53
4458 5794 4.525487 ACGGACACAGACTAACTAAATCCA 59.475 41.667 0.00 0.00 0.00 3.41
4459 5795 4.863131 CACGGACACAGACTAACTAAATCC 59.137 45.833 0.00 0.00 0.00 3.01
4460 5796 4.863131 CCACGGACACAGACTAACTAAATC 59.137 45.833 0.00 0.00 0.00 2.17
4461 5797 4.525487 TCCACGGACACAGACTAACTAAAT 59.475 41.667 0.00 0.00 0.00 1.40
4462 5798 3.890756 TCCACGGACACAGACTAACTAAA 59.109 43.478 0.00 0.00 0.00 1.85
4478 5814 0.036164 TCCAACCTGTTGATCCACGG 59.964 55.000 11.47 0.00 42.93 4.94
4512 5887 1.201965 CCGTCGCTGATGAAAAGAAGC 60.202 52.381 0.00 0.00 0.00 3.86
4513 5888 2.069273 ACCGTCGCTGATGAAAAGAAG 58.931 47.619 0.00 0.00 0.00 2.85
4518 5893 1.144969 GACAACCGTCGCTGATGAAA 58.855 50.000 0.13 0.00 31.07 2.69
4532 5907 1.857837 CCAATGCACCAAAACGACAAC 59.142 47.619 0.00 0.00 0.00 3.32
4556 5947 2.159310 CGTTGTGCCAAAGACCTCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
4563 5954 2.354821 AGAAAGTCGTTGTGCCAAAGAC 59.645 45.455 18.89 18.89 0.00 3.01
4568 5959 1.134521 AGTCAGAAAGTCGTTGTGCCA 60.135 47.619 0.00 0.00 30.52 4.92
4569 5960 1.261619 CAGTCAGAAAGTCGTTGTGCC 59.738 52.381 0.00 0.00 30.52 5.01
4583 5974 4.876107 ACAAACCTTGTTGTAGACAGTCAG 59.124 41.667 2.66 0.00 42.22 3.51
4584 5975 4.839121 ACAAACCTTGTTGTAGACAGTCA 58.161 39.130 2.66 0.00 42.22 3.41
4585 5976 4.272748 GGACAAACCTTGTTGTAGACAGTC 59.727 45.833 0.00 0.00 45.52 3.51
4589 5980 4.448210 TCTGGACAAACCTTGTTGTAGAC 58.552 43.478 0.00 0.00 45.52 2.59
4605 5999 2.622436 CCTTCTTCACCGAATCTGGAC 58.378 52.381 0.00 0.00 0.00 4.02
4609 6003 0.984230 TGCCCTTCTTCACCGAATCT 59.016 50.000 0.00 0.00 0.00 2.40
4627 6021 1.209127 GGCGAAACCACCGTCATTG 59.791 57.895 0.00 0.00 38.86 2.82
4628 6022 0.322322 TAGGCGAAACCACCGTCATT 59.678 50.000 0.00 0.00 43.14 2.57
4629 6023 0.322322 TTAGGCGAAACCACCGTCAT 59.678 50.000 0.00 0.00 43.14 3.06
4630 6024 0.320073 CTTAGGCGAAACCACCGTCA 60.320 55.000 0.00 0.00 43.14 4.35
4631 6025 1.632948 GCTTAGGCGAAACCACCGTC 61.633 60.000 0.00 0.00 43.14 4.79
4632 6026 1.670083 GCTTAGGCGAAACCACCGT 60.670 57.895 0.00 0.00 43.14 4.83
4633 6027 1.359459 GAGCTTAGGCGAAACCACCG 61.359 60.000 0.00 0.00 43.14 4.94
4634 6028 0.036294 AGAGCTTAGGCGAAACCACC 60.036 55.000 0.00 0.00 43.14 4.61
4636 6030 2.764010 TCATAGAGCTTAGGCGAAACCA 59.236 45.455 0.00 0.00 43.14 3.67
4637 6031 3.454371 TCATAGAGCTTAGGCGAAACC 57.546 47.619 0.00 0.00 44.37 3.27
4639 6033 4.465632 TGTTCATAGAGCTTAGGCGAAA 57.534 40.909 0.00 0.00 44.37 3.46
4640 6034 4.371786 CATGTTCATAGAGCTTAGGCGAA 58.628 43.478 0.00 0.00 44.37 4.70
4641 6035 3.243873 CCATGTTCATAGAGCTTAGGCGA 60.244 47.826 0.00 0.00 44.37 5.54
4643 6037 4.342862 TCCATGTTCATAGAGCTTAGGC 57.657 45.455 0.00 0.00 39.06 3.93
4680 6075 5.330455 TGGCAATACAAACAACACAAGAA 57.670 34.783 0.00 0.00 0.00 2.52
4682 6077 5.403166 CAGATGGCAATACAAACAACACAAG 59.597 40.000 0.00 0.00 0.00 3.16
4690 6085 3.438781 TCGAACCAGATGGCAATACAAAC 59.561 43.478 0.00 0.00 39.32 2.93
4697 6092 2.488204 TTCATCGAACCAGATGGCAA 57.512 45.000 0.00 0.00 45.88 4.52
4698 6093 2.715749 ATTCATCGAACCAGATGGCA 57.284 45.000 0.00 0.00 45.88 4.92
4741 6136 9.884636 GGCCCTAAACTTTGAAAATTGTATATT 57.115 29.630 0.00 0.00 0.00 1.28
4743 6138 8.658840 AGGCCCTAAACTTTGAAAATTGTATA 57.341 30.769 0.00 0.00 0.00 1.47
4754 6149 3.996363 GCAAAATGAGGCCCTAAACTTTG 59.004 43.478 0.00 3.71 0.00 2.77
4770 6165 3.578688 GCTCCGAGACAAAATGCAAAAT 58.421 40.909 0.00 0.00 0.00 1.82
4781 6176 1.485066 GGAATTTAGGGCTCCGAGACA 59.515 52.381 3.00 0.00 0.00 3.41
4785 6180 0.837272 CCAGGAATTTAGGGCTCCGA 59.163 55.000 0.00 0.00 34.22 4.55
4789 6184 1.486726 CGTCTCCAGGAATTTAGGGCT 59.513 52.381 0.00 0.00 0.00 5.19
4792 6187 1.475213 GGCCGTCTCCAGGAATTTAGG 60.475 57.143 0.00 0.00 0.00 2.69
4794 6189 0.177141 CGGCCGTCTCCAGGAATTTA 59.823 55.000 19.50 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.