Multiple sequence alignment - TraesCS4B01G247600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G247600 chr4B 100.000 6807 0 0 1 6807 512548109 512554915 0.000000e+00 12571.0
1 TraesCS4B01G247600 chr4B 96.667 150 5 0 5125 5274 503494159 503494308 4.080000e-62 250.0
2 TraesCS4B01G247600 chr4A 88.931 3198 222 60 363 3496 48159550 48156421 0.000000e+00 3823.0
3 TraesCS4B01G247600 chr4A 88.942 1465 118 13 3618 5052 48156367 48154917 0.000000e+00 1768.0
4 TraesCS4B01G247600 chr4A 90.705 1022 75 10 5276 6292 48154876 48153870 0.000000e+00 1343.0
5 TraesCS4B01G247600 chr4A 92.077 366 27 2 6324 6688 48153868 48153504 1.310000e-141 514.0
6 TraesCS4B01G247600 chr4A 89.256 121 10 3 6688 6807 48153473 48153355 1.530000e-31 148.0
7 TraesCS4B01G247600 chr4A 97.674 43 1 0 5089 5131 48154922 48154880 2.630000e-09 75.0
8 TraesCS4B01G247600 chr4A 90.196 51 4 1 5042 5092 595981816 595981865 1.580000e-06 65.8
9 TraesCS4B01G247600 chr4D 86.758 1465 133 32 3622 5050 415913304 415914743 0.000000e+00 1574.0
10 TraesCS4B01G247600 chr4D 85.793 1443 133 36 5270 6682 415914783 415916183 0.000000e+00 1463.0
11 TraesCS4B01G247600 chr4D 90.325 1106 63 14 811 1892 415910683 415911768 0.000000e+00 1410.0
12 TraesCS4B01G247600 chr4D 91.260 778 56 10 2837 3605 415912356 415913130 0.000000e+00 1050.0
13 TraesCS4B01G247600 chr4D 92.120 368 26 1 1 365 415908360 415908727 3.640000e-142 516.0
14 TraesCS4B01G247600 chr4D 88.356 438 31 12 2104 2533 415911900 415912325 6.090000e-140 508.0
15 TraesCS4B01G247600 chr4D 88.652 282 27 3 363 642 415909232 415909510 8.460000e-89 339.0
16 TraesCS4B01G247600 chr4D 100.000 43 0 0 5089 5131 415914743 415914785 5.660000e-11 80.5
17 TraesCS4B01G247600 chr7A 85.297 1163 126 16 3163 4302 165003853 165002713 0.000000e+00 1158.0
18 TraesCS4B01G247600 chr5D 86.385 1065 91 23 3267 4302 9919685 9918646 0.000000e+00 1114.0
19 TraesCS4B01G247600 chr5D 75.086 582 105 20 6247 6796 371676797 371677370 1.140000e-57 235.0
20 TraesCS4B01G247600 chr5D 87.755 98 11 1 6700 6796 478314444 478314347 5.580000e-21 113.0
21 TraesCS4B01G247600 chr5D 93.478 46 3 0 5037 5082 88159541 88159496 1.220000e-07 69.4
22 TraesCS4B01G247600 chr5A 86.098 410 30 11 3914 4302 3316005 3316408 3.800000e-112 416.0
23 TraesCS4B01G247600 chr5A 81.361 338 60 2 6301 6635 679483409 679483746 8.700000e-69 272.0
24 TraesCS4B01G247600 chr5A 87.719 114 12 2 6685 6796 597490191 597490078 1.540000e-26 132.0
25 TraesCS4B01G247600 chr5B 78.873 426 77 13 6271 6688 266347669 266347249 6.720000e-70 276.0
26 TraesCS4B01G247600 chr5B 94.444 144 8 0 5129 5272 283999640 283999783 8.890000e-54 222.0
27 TraesCS4B01G247600 chr5B 79.121 91 16 3 6123 6211 343717454 343717365 7.370000e-05 60.2
28 TraesCS4B01G247600 chrUn 78.638 426 78 13 6271 6688 430915474 430915894 3.130000e-68 270.0
29 TraesCS4B01G247600 chr3A 86.920 237 25 5 4638 4869 64998811 64999046 1.880000e-65 261.0
30 TraesCS4B01G247600 chr3A 80.952 84 8 6 4999 5082 480152631 480152706 7.370000e-05 60.2
31 TraesCS4B01G247600 chr7B 95.333 150 7 0 5124 5273 297161331 297161182 8.820000e-59 239.0
32 TraesCS4B01G247600 chr7B 93.243 148 8 2 5125 5270 665423383 665423236 4.130000e-52 217.0
33 TraesCS4B01G247600 chr3B 96.528 144 5 0 5129 5272 127906733 127906590 8.820000e-59 239.0
34 TraesCS4B01G247600 chr3B 95.862 145 6 0 5127 5271 210461558 210461702 1.140000e-57 235.0
35 TraesCS4B01G247600 chr3B 78.810 269 51 3 6350 6612 22919000 22919268 7.020000e-40 176.0
36 TraesCS4B01G247600 chr3B 85.567 97 13 1 372 468 697470115 697470210 4.340000e-17 100.0
37 TraesCS4B01G247600 chr3B 85.417 96 13 1 6702 6796 604279244 604279339 1.560000e-16 99.0
38 TraesCS4B01G247600 chr1B 96.528 144 5 0 5129 5272 456301068 456300925 8.820000e-59 239.0
39 TraesCS4B01G247600 chr1B 76.471 153 36 0 362 514 62002853 62002701 4.370000e-12 84.2
40 TraesCS4B01G247600 chr1B 77.465 142 30 2 363 502 679660905 679660764 4.370000e-12 84.2
41 TraesCS4B01G247600 chr2B 96.429 140 5 0 5131 5270 683310286 683310147 1.480000e-56 231.0
42 TraesCS4B01G247600 chr2B 95.714 140 6 0 5131 5270 107499976 107500115 6.870000e-55 226.0
43 TraesCS4B01G247600 chr2D 74.905 526 106 14 6054 6558 20380764 20380244 4.130000e-52 217.0
44 TraesCS4B01G247600 chr2D 76.286 350 74 4 6272 6612 413944288 413943939 1.950000e-40 178.0
45 TraesCS4B01G247600 chr2D 82.000 100 17 1 363 461 507462823 507462724 4.370000e-12 84.2
46 TraesCS4B01G247600 chr2D 95.455 44 2 0 5041 5084 342105295 342105252 3.410000e-08 71.3
47 TraesCS4B01G247600 chr3D 78.992 238 46 3 6288 6521 29959986 29960223 7.070000e-35 159.0
48 TraesCS4B01G247600 chr3D 83.636 110 17 1 6688 6796 457240052 457240161 1.210000e-17 102.0
49 TraesCS4B01G247600 chr3D 94.118 51 2 1 5033 5082 612889725 612889675 7.320000e-10 76.8
50 TraesCS4B01G247600 chr3D 81.481 81 7 6 4999 5079 360586981 360587053 7.370000e-05 60.2
51 TraesCS4B01G247600 chr6D 85.849 106 15 0 6688 6793 420618221 420618326 5.580000e-21 113.0
52 TraesCS4B01G247600 chr6D 84.466 103 15 1 6695 6796 427226228 427226330 4.340000e-17 100.0
53 TraesCS4B01G247600 chr6D 97.778 45 1 0 5038 5082 28032536 28032492 2.040000e-10 78.7
54 TraesCS4B01G247600 chr1D 86.735 98 12 1 6700 6796 477756833 477756736 2.600000e-19 108.0
55 TraesCS4B01G247600 chr6A 84.158 101 15 1 363 462 98213427 98213527 5.620000e-16 97.1
56 TraesCS4B01G247600 chr7D 100.000 41 0 0 5042 5082 29876369 29876409 7.320000e-10 76.8
57 TraesCS4B01G247600 chr1A 75.817 153 34 3 363 514 586623737 586623587 2.630000e-09 75.0
58 TraesCS4B01G247600 chr2A 81.319 91 14 3 363 451 2865835 2865924 3.410000e-08 71.3
59 TraesCS4B01G247600 chr2A 100.000 35 0 0 5048 5082 311162201 311162167 1.580000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G247600 chr4B 512548109 512554915 6806 False 12571.0000 12571 100.000000 1 6807 1 chr4B.!!$F2 6806
1 TraesCS4B01G247600 chr4A 48153355 48159550 6195 True 1278.5000 3823 91.264167 363 6807 6 chr4A.!!$R1 6444
2 TraesCS4B01G247600 chr4D 415908360 415916183 7823 False 867.5625 1574 90.408000 1 6682 8 chr4D.!!$F1 6681
3 TraesCS4B01G247600 chr7A 165002713 165003853 1140 True 1158.0000 1158 85.297000 3163 4302 1 chr7A.!!$R1 1139
4 TraesCS4B01G247600 chr5D 9918646 9919685 1039 True 1114.0000 1114 86.385000 3267 4302 1 chr5D.!!$R1 1035
5 TraesCS4B01G247600 chr5D 371676797 371677370 573 False 235.0000 235 75.086000 6247 6796 1 chr5D.!!$F1 549
6 TraesCS4B01G247600 chr2D 20380244 20380764 520 True 217.0000 217 74.905000 6054 6558 1 chr2D.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 324 0.032615 AACAAGAAAGTGCCCCACCA 60.033 50.0 0.00 0.0 34.49 4.17 F
775 2350 0.468226 ACGAACCTGAACTGCCTGAA 59.532 50.0 0.00 0.0 0.00 3.02 F
1639 3260 0.466189 TGGCTGCTTTGCTATAGGGC 60.466 55.0 1.04 0.0 0.00 5.19 F
2761 4446 0.315059 GTACGATTTGATGCGCCACG 60.315 55.0 4.18 0.0 0.00 4.94 F
4311 6214 0.109179 TTGCCATGTCTCAAATGCGC 60.109 50.0 0.00 0.0 0.00 6.09 F
5137 7040 0.035056 CAGTGTCCCTTTAGGCCCTG 60.035 60.0 0.00 0.0 34.51 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 2956 1.230635 AACGGCTGTCACTGACATGC 61.231 55.000 12.34 15.92 41.94 4.06 R
2755 4440 1.157870 ACTTTCAGGAACACGTGGCG 61.158 55.000 21.57 3.07 0.00 5.69 R
3460 5153 1.260561 CACGCCGTAGACCATAATTGC 59.739 52.381 0.00 0.00 0.00 3.56 R
4500 6403 0.539438 ATTTCCGCCAGCTTGACCAA 60.539 50.000 0.00 0.00 0.00 3.67 R
5167 7070 0.033109 CAAACCTCCCCAATCCCCTC 60.033 60.000 0.00 0.00 0.00 4.30 R
6178 8093 0.415429 AGAGGAGAGGAAGAGGGCAA 59.585 55.000 0.00 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 25 1.378382 CCATCGGTGGCCACAATCA 60.378 57.895 35.78 17.07 39.01 2.57
36 40 4.051237 CACAATCAACAACTCGAGTGAGA 58.949 43.478 20.85 14.57 45.57 3.27
115 119 3.277133 GCAGGCATTTGAGGCGAA 58.723 55.556 0.00 0.00 39.37 4.70
138 142 1.078759 CATGTTCTCGCCGACTCCAC 61.079 60.000 0.00 0.00 0.00 4.02
140 144 4.415332 TTCTCGCCGACTCCACGC 62.415 66.667 0.00 0.00 0.00 5.34
148 152 4.357947 GACTCCACGCACGAGGCA 62.358 66.667 1.32 0.00 45.17 4.75
168 172 2.875485 CGACGTGTCCTCACCGAT 59.125 61.111 0.00 0.00 41.09 4.18
216 220 3.467803 AGTTGTTGTGTACTTGCCTCTC 58.532 45.455 0.00 0.00 0.00 3.20
250 254 3.574074 ATCTGCCGCCTTGTTGCCT 62.574 57.895 0.00 0.00 0.00 4.75
260 264 1.682854 CCTTGTTGCCTGAAGAAGCAA 59.317 47.619 0.00 0.00 46.26 3.91
269 273 1.267806 CTGAAGAAGCAACCGCATTGT 59.732 47.619 0.13 0.00 40.77 2.71
276 280 0.730265 GCAACCGCATTGTCCGATAA 59.270 50.000 0.13 0.00 40.77 1.75
281 285 2.006888 CCGCATTGTCCGATAACTTGT 58.993 47.619 0.00 0.00 0.00 3.16
297 301 1.590610 TTGTTGTGCACCTGCGTTGT 61.591 50.000 15.69 0.00 45.83 3.32
302 306 3.898509 GCACCTGCGTTGTGGCAA 61.899 61.111 0.00 0.00 43.39 4.52
320 324 0.032615 AACAAGAAAGTGCCCCACCA 60.033 50.000 0.00 0.00 34.49 4.17
391 902 1.689273 GAAGTCACCACAGACACCTCT 59.311 52.381 0.00 0.00 40.98 3.69
401 912 2.296471 ACAGACACCTCTTAGTCAACGG 59.704 50.000 0.00 0.00 37.23 4.44
423 934 3.536956 AACGTCTCCTTCAACTGAACA 57.463 42.857 0.00 0.00 0.00 3.18
451 962 7.552687 ACATCGCTGGAAAGACTGAAATAAATA 59.447 33.333 0.00 0.00 0.00 1.40
542 1053 8.651389 AGAAACATATAACCATCTAAGCTAGCA 58.349 33.333 18.83 0.00 0.00 3.49
559 1070 6.098679 AGCTAGCAGATGTATCAATTCGATC 58.901 40.000 18.83 0.00 35.39 3.69
566 1077 7.737744 GCAGATGTATCAATTCGATCGTAAAAG 59.262 37.037 15.94 3.18 35.39 2.27
584 1095 8.539674 TCGTAAAAGAATGTCGATGTATCAATG 58.460 33.333 0.00 0.00 0.00 2.82
593 1104 3.884693 TCGATGTATCAATGCCATTTGCT 59.115 39.130 0.00 0.00 42.00 3.91
668 2229 5.853282 GTGTACTTGTTCTGCAAATGCTTAG 59.147 40.000 6.97 0.00 42.66 2.18
691 2252 3.636282 ACACTGGGCGTTTGAAATTAC 57.364 42.857 0.00 0.00 0.00 1.89
692 2253 2.952978 ACACTGGGCGTTTGAAATTACA 59.047 40.909 0.00 0.00 0.00 2.41
693 2254 3.004315 ACACTGGGCGTTTGAAATTACAG 59.996 43.478 0.00 0.00 0.00 2.74
694 2255 3.004315 CACTGGGCGTTTGAAATTACAGT 59.996 43.478 0.00 0.00 38.35 3.55
695 2256 4.214545 CACTGGGCGTTTGAAATTACAGTA 59.785 41.667 0.00 0.00 36.30 2.74
696 2257 4.454504 ACTGGGCGTTTGAAATTACAGTAG 59.545 41.667 0.00 0.00 36.30 2.57
697 2258 4.391155 TGGGCGTTTGAAATTACAGTAGT 58.609 39.130 0.00 0.00 0.00 2.73
699 2260 5.640357 TGGGCGTTTGAAATTACAGTAGTAG 59.360 40.000 0.00 0.00 0.00 2.57
708 2269 8.402326 TGAAATTACAGTAGTAGTACGCAATG 57.598 34.615 2.04 0.00 33.97 2.82
724 2285 2.782163 CAATGCATTTGCTGAGACTCG 58.218 47.619 9.83 0.00 42.66 4.18
735 2310 7.956420 TTTGCTGAGACTCGTCTAAAAATAA 57.044 32.000 0.00 0.00 40.61 1.40
736 2311 8.547967 TTTGCTGAGACTCGTCTAAAAATAAT 57.452 30.769 0.00 0.00 40.61 1.28
737 2312 9.647797 TTTGCTGAGACTCGTCTAAAAATAATA 57.352 29.630 0.00 0.00 40.61 0.98
738 2313 8.630278 TGCTGAGACTCGTCTAAAAATAATAC 57.370 34.615 0.00 0.00 40.61 1.89
739 2314 8.467598 TGCTGAGACTCGTCTAAAAATAATACT 58.532 33.333 0.00 0.00 40.61 2.12
740 2315 8.747666 GCTGAGACTCGTCTAAAAATAATACTG 58.252 37.037 0.00 0.00 40.61 2.74
741 2316 9.790389 CTGAGACTCGTCTAAAAATAATACTGT 57.210 33.333 0.00 0.00 40.61 3.55
745 2320 8.847444 ACTCGTCTAAAAATAATACTGTACCG 57.153 34.615 0.00 0.00 0.00 4.02
746 2321 8.462016 ACTCGTCTAAAAATAATACTGTACCGT 58.538 33.333 0.00 0.00 0.00 4.83
747 2322 9.935682 CTCGTCTAAAAATAATACTGTACCGTA 57.064 33.333 0.00 0.00 0.00 4.02
748 2323 9.716507 TCGTCTAAAAATAATACTGTACCGTAC 57.283 33.333 1.40 1.40 0.00 3.67
749 2324 9.722056 CGTCTAAAAATAATACTGTACCGTACT 57.278 33.333 10.03 0.00 0.00 2.73
775 2350 0.468226 ACGAACCTGAACTGCCTGAA 59.532 50.000 0.00 0.00 0.00 3.02
780 2355 1.425066 ACCTGAACTGCCTGAATCCAA 59.575 47.619 0.00 0.00 0.00 3.53
781 2356 2.089980 CCTGAACTGCCTGAATCCAAG 58.910 52.381 0.00 0.00 0.00 3.61
782 2357 2.553904 CCTGAACTGCCTGAATCCAAGT 60.554 50.000 0.00 0.00 0.00 3.16
783 2358 2.746362 CTGAACTGCCTGAATCCAAGTC 59.254 50.000 0.00 0.00 0.00 3.01
784 2359 2.087646 GAACTGCCTGAATCCAAGTCC 58.912 52.381 0.00 0.00 0.00 3.85
785 2360 1.067295 ACTGCCTGAATCCAAGTCCA 58.933 50.000 0.00 0.00 0.00 4.02
800 2375 2.034687 CCAACCTGGAGCAGTGGG 59.965 66.667 0.00 0.00 40.96 4.61
866 2445 2.588877 CGATCCAAATCCGGCGCT 60.589 61.111 7.64 0.00 0.00 5.92
868 2447 2.203209 ATCCAAATCCGGCGCTCC 60.203 61.111 7.64 0.00 0.00 4.70
955 2535 3.591835 GCTCCGCTCCTCCTCTCG 61.592 72.222 0.00 0.00 0.00 4.04
1071 2657 1.364901 GTGGGTGACGGTCGAAGAA 59.635 57.895 3.34 0.00 39.69 2.52
1156 2742 4.361253 CCTCCAACAGGTGACACG 57.639 61.111 0.00 0.00 37.53 4.49
1157 2743 1.961277 CCTCCAACAGGTGACACGC 60.961 63.158 0.00 0.00 37.53 5.34
1159 2745 3.345808 CCAACAGGTGACACGCCG 61.346 66.667 0.00 0.00 39.30 6.46
1174 2760 4.862823 CCGACCCTCCCTCCTCCC 62.863 77.778 0.00 0.00 0.00 4.30
1175 2761 4.862823 CGACCCTCCCTCCTCCCC 62.863 77.778 0.00 0.00 0.00 4.81
1176 2762 3.369388 GACCCTCCCTCCTCCCCT 61.369 72.222 0.00 0.00 0.00 4.79
1177 2763 3.369388 ACCCTCCCTCCTCCCCTC 61.369 72.222 0.00 0.00 0.00 4.30
1178 2764 3.039526 CCCTCCCTCCTCCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
1179 2765 2.612251 CCTCCCTCCTCCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
1180 2766 2.018086 CCTCCCTCCTCCCCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
1181 2767 1.541672 CTCCCTCCTCCCCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
1182 2768 2.015726 TCCCTCCTCCCCTCTCTCC 61.016 68.421 0.00 0.00 0.00 3.71
1183 2769 2.197324 CCTCCTCCCCTCTCTCCG 59.803 72.222 0.00 0.00 0.00 4.63
1207 2793 1.005867 CCCGGTTCCTTCGTTTCGA 60.006 57.895 0.00 0.00 0.00 3.71
1215 2801 1.080705 CTTCGTTTCGACCCGCTCT 60.081 57.895 0.00 0.00 34.89 4.09
1315 2905 2.262915 CCGAGGTGAGTCAGCCAC 59.737 66.667 18.47 11.98 31.60 5.01
1319 2909 2.665603 GGTGAGTCAGCCACCCTC 59.334 66.667 11.37 0.00 46.30 4.30
1344 2934 2.166459 CTCTCCACACTCGCCATTAGAA 59.834 50.000 0.00 0.00 0.00 2.10
1348 2956 2.868583 CCACACTCGCCATTAGAATCTG 59.131 50.000 0.00 0.00 0.00 2.90
1362 2970 3.597255 AGAATCTGCATGTCAGTGACAG 58.403 45.455 28.54 20.83 46.04 3.51
1407 3024 2.216898 CCTCTGAATTTCGATCCTGGC 58.783 52.381 0.00 0.00 0.00 4.85
1639 3260 0.466189 TGGCTGCTTTGCTATAGGGC 60.466 55.000 1.04 0.00 0.00 5.19
1748 3369 6.431543 TCTTATTGTTTTGCCGGTCTAAATGA 59.568 34.615 1.90 0.00 0.00 2.57
1807 3428 3.270027 CATTGGCGTAGGTGAGAAATCA 58.730 45.455 0.00 0.00 0.00 2.57
1841 3462 3.826729 AGGTGCCACTTTTCAGGTAAATC 59.173 43.478 0.00 0.00 0.00 2.17
1854 3475 4.540099 TCAGGTAAATCTCCTCCACCAATT 59.460 41.667 0.00 0.00 32.37 2.32
1864 3485 8.700145 ATCTCCTCCACCAATTTCCATATATA 57.300 34.615 0.00 0.00 0.00 0.86
1906 3578 5.698545 GCCTGAGCTTACGAATTATCTCATT 59.301 40.000 0.00 0.00 35.50 2.57
1918 3590 9.524106 ACGAATTATCTCATTAACGTGTATGAA 57.476 29.630 12.31 6.13 30.90 2.57
1919 3591 9.779237 CGAATTATCTCATTAACGTGTATGAAC 57.221 33.333 12.31 0.00 30.90 3.18
1923 3595 7.772332 ATCTCATTAACGTGTATGAACTTCC 57.228 36.000 12.31 0.00 30.90 3.46
1924 3596 6.931838 TCTCATTAACGTGTATGAACTTCCT 58.068 36.000 12.31 0.00 30.90 3.36
1925 3597 7.383687 TCTCATTAACGTGTATGAACTTCCTT 58.616 34.615 12.31 0.00 30.90 3.36
1926 3598 7.544566 TCTCATTAACGTGTATGAACTTCCTTC 59.455 37.037 12.31 0.00 30.90 3.46
1927 3599 7.383687 TCATTAACGTGTATGAACTTCCTTCT 58.616 34.615 9.65 0.00 0.00 2.85
1928 3600 7.876068 TCATTAACGTGTATGAACTTCCTTCTT 59.124 33.333 9.65 0.00 0.00 2.52
1929 3601 8.504005 CATTAACGTGTATGAACTTCCTTCTTT 58.496 33.333 4.57 0.00 0.00 2.52
1930 3602 6.541111 AACGTGTATGAACTTCCTTCTTTC 57.459 37.500 0.00 0.00 0.00 2.62
1931 3603 4.995487 ACGTGTATGAACTTCCTTCTTTCC 59.005 41.667 0.00 0.00 0.00 3.13
1932 3604 4.392138 CGTGTATGAACTTCCTTCTTTCCC 59.608 45.833 0.00 0.00 0.00 3.97
1933 3605 4.700692 GTGTATGAACTTCCTTCTTTCCCC 59.299 45.833 0.00 0.00 0.00 4.81
1934 3606 2.971901 TGAACTTCCTTCTTTCCCCC 57.028 50.000 0.00 0.00 0.00 5.40
2081 3756 2.423538 GCCAACAACCTAGCGATGATTT 59.576 45.455 0.00 0.00 0.00 2.17
2129 3805 4.923281 GTGTGTTGATTTGGCCATAAACTC 59.077 41.667 6.09 10.36 0.00 3.01
2189 3865 6.159988 TCCTTTTATTGGGTTTATTGTTGCG 58.840 36.000 0.00 0.00 0.00 4.85
2258 3935 3.266772 TCAGGGATTTGACTGGTATGCTT 59.733 43.478 0.00 0.00 35.47 3.91
2270 3947 6.785466 TGACTGGTATGCTTGGAGGTATATTA 59.215 38.462 0.00 0.00 0.00 0.98
2276 3953 4.575885 TGCTTGGAGGTATATTATTCGCC 58.424 43.478 0.00 0.00 0.00 5.54
2307 3984 7.618137 TCAGGTACCCAGTTTTCTAACTAATC 58.382 38.462 8.74 0.00 42.67 1.75
2310 3987 6.822170 GGTACCCAGTTTTCTAACTAATCAGG 59.178 42.308 0.00 0.00 42.67 3.86
2338 4015 8.438676 AGTAAACATTATCATCTTACCACTGC 57.561 34.615 0.00 0.00 0.00 4.40
2519 4204 5.263599 TGAATGACCTTGGTAATGCTCAAT 58.736 37.500 0.00 0.00 0.00 2.57
2524 4209 7.531857 TGACCTTGGTAATGCTCAATTAAAA 57.468 32.000 0.00 0.00 32.47 1.52
2565 4250 1.981495 CTGTTTCTTCCCTCCCTCTGT 59.019 52.381 0.00 0.00 0.00 3.41
2570 4255 5.788533 TGTTTCTTCCCTCCCTCTGTATTTA 59.211 40.000 0.00 0.00 0.00 1.40
2573 4258 5.155905 TCTTCCCTCCCTCTGTATTTATCC 58.844 45.833 0.00 0.00 0.00 2.59
2579 4264 5.604650 CCTCCCTCTGTATTTATCCTCTTGT 59.395 44.000 0.00 0.00 0.00 3.16
2601 4286 6.346096 TGTGTCATATAGCCAAGTTAGGTTC 58.654 40.000 0.00 0.00 0.00 3.62
2602 4287 6.156256 TGTGTCATATAGCCAAGTTAGGTTCT 59.844 38.462 0.00 0.00 0.00 3.01
2621 4306 1.198637 CTGTGCTAGCACCTTTTGAGC 59.801 52.381 37.90 16.00 45.63 4.26
2622 4307 1.202806 TGTGCTAGCACCTTTTGAGCT 60.203 47.619 37.90 0.00 45.63 4.09
2660 4345 2.852449 TCCCTCATTGCTTACCCAATCT 59.148 45.455 0.00 0.00 33.35 2.40
2661 4346 2.954318 CCCTCATTGCTTACCCAATCTG 59.046 50.000 0.00 0.00 33.35 2.90
2677 4362 6.127026 ACCCAATCTGAGGTTTCTACTATCAC 60.127 42.308 0.00 0.00 29.94 3.06
2688 4373 7.873505 AGGTTTCTACTATCACTTTGAACTGTC 59.126 37.037 0.00 0.00 0.00 3.51
2690 4375 8.704234 GTTTCTACTATCACTTTGAACTGTCAG 58.296 37.037 0.00 0.00 34.49 3.51
2701 4386 3.833732 TGAACTGTCAGTGAGTAGGACT 58.166 45.455 6.18 0.00 32.84 3.85
2750 4435 7.042335 GCTATATTAGGCAGATGGTACGATTT 58.958 38.462 0.00 0.00 0.00 2.17
2751 4436 7.010552 GCTATATTAGGCAGATGGTACGATTTG 59.989 40.741 4.28 4.28 0.00 2.32
2755 4440 2.031682 GGCAGATGGTACGATTTGATGC 60.032 50.000 11.84 10.03 0.00 3.91
2758 4443 0.944386 ATGGTACGATTTGATGCGCC 59.056 50.000 4.18 0.00 0.00 6.53
2761 4446 0.315059 GTACGATTTGATGCGCCACG 60.315 55.000 4.18 0.00 0.00 4.94
2773 4458 1.569493 CGCCACGTGTTCCTGAAAG 59.431 57.895 15.65 0.00 0.00 2.62
2790 4475 9.739276 TTCCTGAAAGTACATCTTACATGAAAT 57.261 29.630 0.00 0.00 35.02 2.17
2802 4487 7.194112 TCTTACATGAAATCTGGGTCATACA 57.806 36.000 0.00 0.00 33.15 2.29
2830 4515 9.003658 AGAACACTTTTCCTATACACATGAAAG 57.996 33.333 0.00 0.00 0.00 2.62
2842 4527 9.894783 CTATACACATGAAAGTATAGTAACGCT 57.105 33.333 22.33 0.00 42.34 5.07
2968 4653 8.725405 TCAGTAAGTCAGTTTACATGTTGAAA 57.275 30.769 2.30 0.00 36.27 2.69
3008 4694 7.459795 AGAGGAATTTCTGGAATTGTTCTTC 57.540 36.000 0.00 0.00 38.06 2.87
3019 4705 8.375506 TCTGGAATTGTTCTTCTCTTAGCTAAA 58.624 33.333 7.74 0.00 0.00 1.85
3071 4757 1.080995 GTGGAGCAACTAGAGCAGCG 61.081 60.000 12.97 0.00 0.00 5.18
3157 4845 9.774742 GAACAATCTCAACATTTTGTAGATACC 57.225 33.333 6.85 0.00 32.74 2.73
3180 4868 7.905604 CCAATCAGATGGTAAATTATCGCTA 57.094 36.000 0.00 0.00 35.65 4.26
3347 5035 6.999871 TCTCACAGTATTCCATATGTACGGTA 59.000 38.462 1.24 0.00 0.00 4.02
3386 5074 7.817478 ACTTGTTAGACATTGTCGATTACATCA 59.183 33.333 11.01 1.97 38.10 3.07
3390 5078 9.638300 GTTAGACATTGTCGATTACATCATTTC 57.362 33.333 11.01 0.00 38.10 2.17
3392 5080 7.913423 AGACATTGTCGATTACATCATTTCTG 58.087 34.615 11.01 0.00 38.10 3.02
3397 5085 5.294306 TGTCGATTACATCATTTCTGGAAGC 59.706 40.000 0.00 0.00 31.43 3.86
3460 5153 3.882888 TGCCTTACTGTTCCTGTCAAAAG 59.117 43.478 0.00 0.00 0.00 2.27
3477 5170 4.095782 TCAAAAGCAATTATGGTCTACGGC 59.904 41.667 0.00 0.00 35.91 5.68
3519 5212 1.767681 CTTCTGCTTAGCCTCTCCCAT 59.232 52.381 0.29 0.00 0.00 4.00
3522 5215 3.384168 TCTGCTTAGCCTCTCCCATTAA 58.616 45.455 0.29 0.00 0.00 1.40
3561 5254 7.493743 TGCTGCAAATTGTGTTGATATTTTT 57.506 28.000 0.00 0.00 0.00 1.94
3833 5699 8.458052 CAGTAACAAAATGTTGATGCCATAGTA 58.542 33.333 1.62 0.00 41.30 1.82
3834 5700 9.189156 AGTAACAAAATGTTGATGCCATAGTAT 57.811 29.630 1.62 0.00 41.30 2.12
3922 5800 6.481644 AGAACTGAGATTTGAACACACTTCTC 59.518 38.462 0.00 0.00 0.00 2.87
3928 5806 7.441157 TGAGATTTGAACACACTTCTCGTTTAT 59.559 33.333 0.00 0.00 33.87 1.40
3935 5813 8.545420 TGAACACACTTCTCGTTTATAAACTTC 58.455 33.333 22.57 15.76 36.77 3.01
4017 5899 9.227490 CTCAGTACACTAAATTATGAGAGAACG 57.773 37.037 0.00 0.00 35.78 3.95
4087 5969 3.181480 TGCTTTTCCTTTTCCTGGTTTCG 60.181 43.478 0.00 0.00 0.00 3.46
4108 5990 4.452114 TCGTGAAATCCATTCTGTTGTGAG 59.548 41.667 0.00 0.00 38.92 3.51
4118 6000 5.277974 CCATTCTGTTGTGAGTTGTGGTTAG 60.278 44.000 0.00 0.00 0.00 2.34
4153 6035 6.540189 GCAGGATCAGTTAGCATCTAAGAAAA 59.460 38.462 0.00 0.00 0.00 2.29
4159 6062 9.618890 ATCAGTTAGCATCTAAGAAAATTAGCA 57.381 29.630 0.00 0.00 0.00 3.49
4263 6166 1.072505 GGTCCAAGTTCGAGGCCAA 59.927 57.895 5.01 0.00 0.00 4.52
4270 6173 1.620822 AGTTCGAGGCCAAGCATTTT 58.379 45.000 5.01 0.00 0.00 1.82
4295 6198 8.880878 TTTTAAGGGACACTTCTTTATTTTGC 57.119 30.769 0.00 0.00 40.64 3.68
4311 6214 0.109179 TTGCCATGTCTCAAATGCGC 60.109 50.000 0.00 0.00 0.00 6.09
4316 6219 3.734597 GCCATGTCTCAAATGCGCAATTA 60.735 43.478 17.11 0.00 0.00 1.40
4335 6238 6.688922 GCAATTAAGGTAGATCTGTCCATGGA 60.689 42.308 11.44 11.44 0.00 3.41
4339 6242 5.559148 AGGTAGATCTGTCCATGGAATTC 57.441 43.478 18.20 10.86 0.00 2.17
4385 6288 7.971455 ACTTTAACTGGTTCGTTTATATGAGC 58.029 34.615 0.00 0.00 0.00 4.26
4394 6297 6.265577 GTTCGTTTATATGAGCCTGCAAAAT 58.734 36.000 0.00 0.00 0.00 1.82
4411 6314 7.783090 TGCAAAATTTTGATGCAAGAAGTTA 57.217 28.000 30.40 0.00 46.23 2.24
4467 6370 7.094762 GGAATTTTCCTAGTTCTTACACCACAG 60.095 40.741 1.97 0.00 44.11 3.66
4474 6377 2.254546 TCTTACACCACAGCAGGTTG 57.745 50.000 0.00 0.00 40.77 3.77
4500 6403 4.265073 AGCAAGAGCATATTCTTCCGTTT 58.735 39.130 0.00 0.00 45.49 3.60
4527 6430 2.919228 AGCTGGCGGAAATTACTTAGG 58.081 47.619 0.00 0.00 0.00 2.69
4587 6490 1.407258 GCCTCGATGCTTACTCACTCT 59.593 52.381 5.34 0.00 0.00 3.24
4603 6506 7.526142 ACTCACTCTGACATGTAAGTTCTAA 57.474 36.000 10.16 0.00 0.00 2.10
4609 6512 8.085296 ACTCTGACATGTAAGTTCTAACTTCTG 58.915 37.037 10.16 10.13 45.65 3.02
4628 6531 7.810658 ACTTCTGAACTATGCTTTTATGTGTG 58.189 34.615 0.00 0.00 0.00 3.82
4629 6532 7.445402 ACTTCTGAACTATGCTTTTATGTGTGT 59.555 33.333 0.00 0.00 0.00 3.72
4641 6544 6.625740 GCTTTTATGTGTGTGACATTGCCTAT 60.626 38.462 0.00 0.00 43.20 2.57
4642 6545 6.832520 TTTATGTGTGTGACATTGCCTATT 57.167 33.333 0.00 0.00 43.20 1.73
4643 6546 4.707030 ATGTGTGTGACATTGCCTATTG 57.293 40.909 0.00 0.00 43.20 1.90
4651 6554 7.392953 TGTGTGACATTGCCTATTGATTAAAGA 59.607 33.333 0.00 0.00 0.00 2.52
4652 6555 8.243426 GTGTGACATTGCCTATTGATTAAAGAA 58.757 33.333 0.00 0.00 0.00 2.52
4655 6558 8.415553 TGACATTGCCTATTGATTAAAGAATGG 58.584 33.333 0.00 0.00 0.00 3.16
4714 6617 9.023962 TGATTGCAAAAACAAGATCCTACTATT 57.976 29.630 1.71 0.00 31.96 1.73
4724 6627 9.614792 AACAAGATCCTACTATTCAAATGGTAC 57.385 33.333 0.00 0.00 32.12 3.34
4727 6630 7.659186 AGATCCTACTATTCAAATGGTACGAC 58.341 38.462 0.00 0.00 32.12 4.34
4738 6641 5.008217 TCAAATGGTACGACTCTTTTGTTGG 59.992 40.000 0.00 0.00 32.98 3.77
4740 6643 3.876341 TGGTACGACTCTTTTGTTGGTT 58.124 40.909 0.00 0.00 0.00 3.67
4743 6646 6.056884 TGGTACGACTCTTTTGTTGGTTATT 58.943 36.000 0.00 0.00 0.00 1.40
4745 6648 6.426025 GGTACGACTCTTTTGTTGGTTATTCT 59.574 38.462 0.00 0.00 0.00 2.40
4747 6650 6.053005 ACGACTCTTTTGTTGGTTATTCTGA 58.947 36.000 0.00 0.00 0.00 3.27
4772 6675 6.259608 ACAGTATATTGATTGCTGCTGACTTC 59.740 38.462 1.74 0.00 0.00 3.01
4786 6689 0.459759 GACTTCCTTTACCTCCCGCG 60.460 60.000 0.00 0.00 0.00 6.46
4831 6734 1.239347 GGACAAGGAAGGCAGTGTTC 58.761 55.000 0.00 0.00 0.00 3.18
4832 6735 1.476833 GGACAAGGAAGGCAGTGTTCA 60.477 52.381 0.00 0.00 0.00 3.18
4836 6739 4.265073 ACAAGGAAGGCAGTGTTCATATC 58.735 43.478 0.00 0.00 0.00 1.63
4905 6808 0.179134 ATGGACTCGTCTTAGCACGC 60.179 55.000 0.00 0.00 39.74 5.34
4908 6811 0.985549 GACTCGTCTTAGCACGCTTG 59.014 55.000 0.00 0.00 39.74 4.01
4938 6841 4.832248 AGAGCAAATCTTGTCATACGGAA 58.168 39.130 0.00 0.00 32.99 4.30
4997 6900 3.135994 TCTCAAAGGTAAAACGCTGTCC 58.864 45.455 0.00 0.00 0.00 4.02
5009 6912 1.271379 ACGCTGTCCCATTTGCTAAGT 60.271 47.619 0.00 0.00 0.00 2.24
5011 6914 2.414559 CGCTGTCCCATTTGCTAAGTTG 60.415 50.000 0.00 0.00 0.00 3.16
5035 6938 5.527582 GTCCATCTTGTGAACTTGTTGTAGT 59.472 40.000 0.00 0.00 0.00 2.73
5050 6953 9.264719 ACTTGTTGTAGTGTTGGTATTTAGTAC 57.735 33.333 0.00 0.00 0.00 2.73
5051 6954 9.485206 CTTGTTGTAGTGTTGGTATTTAGTACT 57.515 33.333 0.00 0.00 33.64 2.73
5052 6955 9.480053 TTGTTGTAGTGTTGGTATTTAGTACTC 57.520 33.333 0.00 0.00 33.64 2.59
5053 6956 8.090214 TGTTGTAGTGTTGGTATTTAGTACTCC 58.910 37.037 0.00 0.00 33.64 3.85
5054 6957 7.174107 TGTAGTGTTGGTATTTAGTACTCCC 57.826 40.000 0.00 0.00 33.64 4.30
5055 6958 6.955851 TGTAGTGTTGGTATTTAGTACTCCCT 59.044 38.462 0.00 0.00 33.64 4.20
5056 6959 6.541934 AGTGTTGGTATTTAGTACTCCCTC 57.458 41.667 0.00 0.00 33.64 4.30
5057 6960 6.262207 AGTGTTGGTATTTAGTACTCCCTCT 58.738 40.000 0.00 0.00 33.64 3.69
5058 6961 6.154706 AGTGTTGGTATTTAGTACTCCCTCTG 59.845 42.308 0.00 0.00 33.64 3.35
5059 6962 6.021030 TGTTGGTATTTAGTACTCCCTCTGT 58.979 40.000 0.00 0.00 33.64 3.41
5060 6963 7.123247 GTGTTGGTATTTAGTACTCCCTCTGTA 59.877 40.741 0.00 0.00 33.64 2.74
5061 6964 7.675195 TGTTGGTATTTAGTACTCCCTCTGTAA 59.325 37.037 0.00 0.00 33.64 2.41
5062 6965 8.534496 GTTGGTATTTAGTACTCCCTCTGTAAA 58.466 37.037 0.00 0.00 33.64 2.01
5063 6966 8.302515 TGGTATTTAGTACTCCCTCTGTAAAG 57.697 38.462 0.00 0.00 33.64 1.85
5064 6967 8.117956 TGGTATTTAGTACTCCCTCTGTAAAGA 58.882 37.037 0.00 0.00 33.64 2.52
5065 6968 8.975295 GGTATTTAGTACTCCCTCTGTAAAGAA 58.025 37.037 0.00 0.00 33.64 2.52
5075 6978 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
5076 6979 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
5077 6980 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
5078 6981 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
5079 6982 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
5086 6989 8.664211 AAGAAATATAAGAGCGTTTAGGAAGG 57.336 34.615 0.00 0.00 0.00 3.46
5087 6990 7.217906 AGAAATATAAGAGCGTTTAGGAAGGG 58.782 38.462 0.00 0.00 0.00 3.95
5088 6991 6.742559 AATATAAGAGCGTTTAGGAAGGGA 57.257 37.500 0.00 0.00 0.00 4.20
5131 7034 2.183679 AGCCTCTCAGTGTCCCTTTAG 58.816 52.381 0.00 0.00 0.00 1.85
5132 7035 1.208293 GCCTCTCAGTGTCCCTTTAGG 59.792 57.143 0.00 0.00 0.00 2.69
5133 7036 1.208293 CCTCTCAGTGTCCCTTTAGGC 59.792 57.143 0.00 0.00 34.51 3.93
5134 7037 1.208293 CTCTCAGTGTCCCTTTAGGCC 59.792 57.143 0.00 0.00 34.51 5.19
5135 7038 0.253327 CTCAGTGTCCCTTTAGGCCC 59.747 60.000 0.00 0.00 34.51 5.80
5136 7039 0.178873 TCAGTGTCCCTTTAGGCCCT 60.179 55.000 0.00 0.00 34.51 5.19
5137 7040 0.035056 CAGTGTCCCTTTAGGCCCTG 60.035 60.000 0.00 0.00 34.51 4.45
5138 7041 0.475828 AGTGTCCCTTTAGGCCCTGT 60.476 55.000 0.00 0.00 34.51 4.00
5139 7042 0.404426 GTGTCCCTTTAGGCCCTGTT 59.596 55.000 0.00 0.00 34.51 3.16
5140 7043 0.696501 TGTCCCTTTAGGCCCTGTTC 59.303 55.000 0.00 0.00 34.51 3.18
5141 7044 0.392595 GTCCCTTTAGGCCCTGTTCG 60.393 60.000 0.00 0.00 34.51 3.95
5142 7045 0.838987 TCCCTTTAGGCCCTGTTCGT 60.839 55.000 0.00 0.00 34.51 3.85
5143 7046 0.037734 CCCTTTAGGCCCTGTTCGTT 59.962 55.000 0.00 0.00 0.00 3.85
5144 7047 1.546998 CCCTTTAGGCCCTGTTCGTTT 60.547 52.381 0.00 0.00 0.00 3.60
5145 7048 2.290450 CCCTTTAGGCCCTGTTCGTTTA 60.290 50.000 0.00 0.00 0.00 2.01
5146 7049 3.414269 CCTTTAGGCCCTGTTCGTTTAA 58.586 45.455 0.00 0.00 0.00 1.52
5147 7050 4.014406 CCTTTAGGCCCTGTTCGTTTAAT 58.986 43.478 0.00 0.00 0.00 1.40
5148 7051 4.095932 CCTTTAGGCCCTGTTCGTTTAATC 59.904 45.833 0.00 0.00 0.00 1.75
5149 7052 2.124277 AGGCCCTGTTCGTTTAATCC 57.876 50.000 0.00 0.00 0.00 3.01
5150 7053 1.100510 GGCCCTGTTCGTTTAATCCC 58.899 55.000 0.00 0.00 0.00 3.85
5151 7054 1.100510 GCCCTGTTCGTTTAATCCCC 58.899 55.000 0.00 0.00 0.00 4.81
5152 7055 1.340697 GCCCTGTTCGTTTAATCCCCT 60.341 52.381 0.00 0.00 0.00 4.79
5153 7056 2.640184 CCCTGTTCGTTTAATCCCCTC 58.360 52.381 0.00 0.00 0.00 4.30
5154 7057 2.277084 CCTGTTCGTTTAATCCCCTCG 58.723 52.381 0.00 0.00 0.00 4.63
5155 7058 1.664151 CTGTTCGTTTAATCCCCTCGC 59.336 52.381 0.00 0.00 0.00 5.03
5156 7059 1.012086 GTTCGTTTAATCCCCTCGCC 58.988 55.000 0.00 0.00 0.00 5.54
5157 7060 0.614294 TTCGTTTAATCCCCTCGCCA 59.386 50.000 0.00 0.00 0.00 5.69
5158 7061 0.108041 TCGTTTAATCCCCTCGCCAC 60.108 55.000 0.00 0.00 0.00 5.01
5159 7062 0.391927 CGTTTAATCCCCTCGCCACA 60.392 55.000 0.00 0.00 0.00 4.17
5160 7063 1.379527 GTTTAATCCCCTCGCCACAG 58.620 55.000 0.00 0.00 0.00 3.66
5161 7064 0.254747 TTTAATCCCCTCGCCACAGG 59.745 55.000 0.00 0.00 0.00 4.00
5167 7070 2.124570 CCTCGCCACAGGGATTGG 60.125 66.667 0.00 0.00 35.59 3.16
5168 7071 2.669133 CCTCGCCACAGGGATTGGA 61.669 63.158 0.00 0.00 36.02 3.53
5169 7072 1.153289 CTCGCCACAGGGATTGGAG 60.153 63.158 0.00 0.00 36.02 3.86
5170 7073 2.124570 CGCCACAGGGATTGGAGG 60.125 66.667 0.00 0.00 36.02 4.30
5171 7074 2.276740 GCCACAGGGATTGGAGGG 59.723 66.667 0.00 0.00 36.02 4.30
5172 7075 3.010144 CCACAGGGATTGGAGGGG 58.990 66.667 0.00 0.00 36.02 4.79
5173 7076 1.619363 CCACAGGGATTGGAGGGGA 60.619 63.158 0.00 0.00 36.02 4.81
5174 7077 0.995675 CCACAGGGATTGGAGGGGAT 60.996 60.000 0.00 0.00 36.02 3.85
5175 7078 0.929244 CACAGGGATTGGAGGGGATT 59.071 55.000 0.00 0.00 0.00 3.01
5176 7079 0.929244 ACAGGGATTGGAGGGGATTG 59.071 55.000 0.00 0.00 0.00 2.67
5177 7080 0.186873 CAGGGATTGGAGGGGATTGG 59.813 60.000 0.00 0.00 0.00 3.16
5178 7081 1.001140 AGGGATTGGAGGGGATTGGG 61.001 60.000 0.00 0.00 0.00 4.12
5179 7082 1.543690 GGATTGGAGGGGATTGGGG 59.456 63.158 0.00 0.00 0.00 4.96
5180 7083 0.998945 GGATTGGAGGGGATTGGGGA 60.999 60.000 0.00 0.00 0.00 4.81
5181 7084 0.480252 GATTGGAGGGGATTGGGGAG 59.520 60.000 0.00 0.00 0.00 4.30
5182 7085 1.001140 ATTGGAGGGGATTGGGGAGG 61.001 60.000 0.00 0.00 0.00 4.30
5183 7086 2.044620 GGAGGGGATTGGGGAGGT 59.955 66.667 0.00 0.00 0.00 3.85
5184 7087 1.622752 GGAGGGGATTGGGGAGGTT 60.623 63.158 0.00 0.00 0.00 3.50
5185 7088 1.221909 GGAGGGGATTGGGGAGGTTT 61.222 60.000 0.00 0.00 0.00 3.27
5186 7089 0.033109 GAGGGGATTGGGGAGGTTTG 60.033 60.000 0.00 0.00 0.00 2.93
5187 7090 0.479589 AGGGGATTGGGGAGGTTTGA 60.480 55.000 0.00 0.00 0.00 2.69
5188 7091 0.033109 GGGGATTGGGGAGGTTTGAG 60.033 60.000 0.00 0.00 0.00 3.02
5189 7092 0.033109 GGGATTGGGGAGGTTTGAGG 60.033 60.000 0.00 0.00 0.00 3.86
5190 7093 0.999712 GGATTGGGGAGGTTTGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
5191 7094 1.064389 GGATTGGGGAGGTTTGAGGAG 60.064 57.143 0.00 0.00 0.00 3.69
5192 7095 1.002857 ATTGGGGAGGTTTGAGGAGG 58.997 55.000 0.00 0.00 0.00 4.30
5193 7096 0.104144 TTGGGGAGGTTTGAGGAGGA 60.104 55.000 0.00 0.00 0.00 3.71
5194 7097 0.121197 TGGGGAGGTTTGAGGAGGAT 59.879 55.000 0.00 0.00 0.00 3.24
5195 7098 1.299939 GGGGAGGTTTGAGGAGGATT 58.700 55.000 0.00 0.00 0.00 3.01
5196 7099 1.641192 GGGGAGGTTTGAGGAGGATTT 59.359 52.381 0.00 0.00 0.00 2.17
5197 7100 2.043115 GGGGAGGTTTGAGGAGGATTTT 59.957 50.000 0.00 0.00 0.00 1.82
5198 7101 3.092301 GGGAGGTTTGAGGAGGATTTTG 58.908 50.000 0.00 0.00 0.00 2.44
5199 7102 3.245264 GGGAGGTTTGAGGAGGATTTTGA 60.245 47.826 0.00 0.00 0.00 2.69
5200 7103 3.759086 GGAGGTTTGAGGAGGATTTTGAC 59.241 47.826 0.00 0.00 0.00 3.18
5201 7104 4.507512 GGAGGTTTGAGGAGGATTTTGACT 60.508 45.833 0.00 0.00 0.00 3.41
5202 7105 5.066913 AGGTTTGAGGAGGATTTTGACTT 57.933 39.130 0.00 0.00 0.00 3.01
5203 7106 4.829492 AGGTTTGAGGAGGATTTTGACTTG 59.171 41.667 0.00 0.00 0.00 3.16
5204 7107 4.550422 GTTTGAGGAGGATTTTGACTTGC 58.450 43.478 0.00 0.00 0.00 4.01
5205 7108 3.507162 TGAGGAGGATTTTGACTTGCA 57.493 42.857 0.00 0.00 0.00 4.08
5206 7109 3.831323 TGAGGAGGATTTTGACTTGCAA 58.169 40.909 0.00 0.00 33.88 4.08
5207 7110 3.822735 TGAGGAGGATTTTGACTTGCAAG 59.177 43.478 24.84 24.84 37.87 4.01
5208 7111 3.160269 AGGAGGATTTTGACTTGCAAGG 58.840 45.455 29.18 12.28 37.87 3.61
5209 7112 2.232208 GGAGGATTTTGACTTGCAAGGG 59.768 50.000 29.18 7.81 37.87 3.95
5210 7113 3.157087 GAGGATTTTGACTTGCAAGGGA 58.843 45.455 29.18 13.09 37.87 4.20
5211 7114 3.766051 GAGGATTTTGACTTGCAAGGGAT 59.234 43.478 29.18 14.92 37.87 3.85
5212 7115 4.162651 AGGATTTTGACTTGCAAGGGATT 58.837 39.130 29.18 9.27 37.87 3.01
5213 7116 4.594491 AGGATTTTGACTTGCAAGGGATTT 59.406 37.500 29.18 8.87 37.87 2.17
5214 7117 5.779771 AGGATTTTGACTTGCAAGGGATTTA 59.220 36.000 29.18 11.01 37.87 1.40
5215 7118 6.269769 AGGATTTTGACTTGCAAGGGATTTAA 59.730 34.615 29.18 15.31 37.87 1.52
5216 7119 7.038088 AGGATTTTGACTTGCAAGGGATTTAAT 60.038 33.333 29.18 18.73 37.87 1.40
5217 7120 7.278646 GGATTTTGACTTGCAAGGGATTTAATC 59.721 37.037 29.18 23.91 37.87 1.75
5218 7121 6.036577 TTTGACTTGCAAGGGATTTAATCC 57.963 37.500 29.18 15.22 39.39 3.01
5229 7132 3.779444 GGATTTAATCCCCTCCAATCCC 58.221 50.000 12.74 0.00 43.88 3.85
5230 7133 3.402708 GGATTTAATCCCCTCCAATCCCT 59.597 47.826 12.74 0.00 43.88 4.20
5231 7134 4.140686 GGATTTAATCCCCTCCAATCCCTT 60.141 45.833 12.74 0.00 43.88 3.95
5232 7135 4.984642 TTTAATCCCCTCCAATCCCTTT 57.015 40.909 0.00 0.00 0.00 3.11
5233 7136 4.536295 TTAATCCCCTCCAATCCCTTTC 57.464 45.455 0.00 0.00 0.00 2.62
5234 7137 2.000290 ATCCCCTCCAATCCCTTTCA 58.000 50.000 0.00 0.00 0.00 2.69
5235 7138 1.766951 TCCCCTCCAATCCCTTTCAA 58.233 50.000 0.00 0.00 0.00 2.69
5236 7139 2.077803 TCCCCTCCAATCCCTTTCAAA 58.922 47.619 0.00 0.00 0.00 2.69
5237 7140 2.179427 CCCCTCCAATCCCTTTCAAAC 58.821 52.381 0.00 0.00 0.00 2.93
5238 7141 2.179427 CCCTCCAATCCCTTTCAAACC 58.821 52.381 0.00 0.00 0.00 3.27
5239 7142 2.225369 CCCTCCAATCCCTTTCAAACCT 60.225 50.000 0.00 0.00 0.00 3.50
5240 7143 3.092301 CCTCCAATCCCTTTCAAACCTC 58.908 50.000 0.00 0.00 0.00 3.85
5241 7144 3.245407 CCTCCAATCCCTTTCAAACCTCT 60.245 47.826 0.00 0.00 0.00 3.69
5242 7145 4.013050 CTCCAATCCCTTTCAAACCTCTC 58.987 47.826 0.00 0.00 0.00 3.20
5243 7146 3.092301 CCAATCCCTTTCAAACCTCTCC 58.908 50.000 0.00 0.00 0.00 3.71
5244 7147 3.500289 CCAATCCCTTTCAAACCTCTCCA 60.500 47.826 0.00 0.00 0.00 3.86
5245 7148 4.151883 CAATCCCTTTCAAACCTCTCCAA 58.848 43.478 0.00 0.00 0.00 3.53
5246 7149 3.963476 TCCCTTTCAAACCTCTCCAAA 57.037 42.857 0.00 0.00 0.00 3.28
5247 7150 3.562182 TCCCTTTCAAACCTCTCCAAAC 58.438 45.455 0.00 0.00 0.00 2.93
5248 7151 2.628178 CCCTTTCAAACCTCTCCAAACC 59.372 50.000 0.00 0.00 0.00 3.27
5249 7152 2.628178 CCTTTCAAACCTCTCCAAACCC 59.372 50.000 0.00 0.00 0.00 4.11
5250 7153 3.566351 CTTTCAAACCTCTCCAAACCCT 58.434 45.455 0.00 0.00 0.00 4.34
5251 7154 4.447180 CCTTTCAAACCTCTCCAAACCCTA 60.447 45.833 0.00 0.00 0.00 3.53
5252 7155 3.782656 TCAAACCTCTCCAAACCCTAC 57.217 47.619 0.00 0.00 0.00 3.18
5253 7156 2.374170 TCAAACCTCTCCAAACCCTACC 59.626 50.000 0.00 0.00 0.00 3.18
5254 7157 1.369403 AACCTCTCCAAACCCTACCC 58.631 55.000 0.00 0.00 0.00 3.69
5255 7158 0.195096 ACCTCTCCAAACCCTACCCA 59.805 55.000 0.00 0.00 0.00 4.51
5256 7159 1.368374 CCTCTCCAAACCCTACCCAA 58.632 55.000 0.00 0.00 0.00 4.12
5257 7160 1.004394 CCTCTCCAAACCCTACCCAAC 59.996 57.143 0.00 0.00 0.00 3.77
5258 7161 1.004394 CTCTCCAAACCCTACCCAACC 59.996 57.143 0.00 0.00 0.00 3.77
5259 7162 0.322187 CTCCAAACCCTACCCAACCG 60.322 60.000 0.00 0.00 0.00 4.44
5260 7163 0.767446 TCCAAACCCTACCCAACCGA 60.767 55.000 0.00 0.00 0.00 4.69
5261 7164 0.110869 CCAAACCCTACCCAACCGAA 59.889 55.000 0.00 0.00 0.00 4.30
5262 7165 1.272258 CCAAACCCTACCCAACCGAAT 60.272 52.381 0.00 0.00 0.00 3.34
5263 7166 1.816224 CAAACCCTACCCAACCGAATG 59.184 52.381 0.00 0.00 0.00 2.67
5264 7167 1.364269 AACCCTACCCAACCGAATGA 58.636 50.000 0.00 0.00 0.00 2.57
5265 7168 0.909623 ACCCTACCCAACCGAATGAG 59.090 55.000 0.00 0.00 0.00 2.90
5266 7169 0.180406 CCCTACCCAACCGAATGAGG 59.820 60.000 0.00 0.00 37.30 3.86
5267 7170 0.463833 CCTACCCAACCGAATGAGGC 60.464 60.000 0.00 0.00 33.69 4.70
5268 7171 0.463833 CTACCCAACCGAATGAGGCC 60.464 60.000 0.00 0.00 33.69 5.19
5269 7172 0.912487 TACCCAACCGAATGAGGCCT 60.912 55.000 3.86 3.86 33.69 5.19
5270 7173 1.000896 CCCAACCGAATGAGGCCTT 60.001 57.895 6.77 0.00 33.69 4.35
5271 7174 0.254747 CCCAACCGAATGAGGCCTTA 59.745 55.000 6.77 1.66 33.69 2.69
5272 7175 1.133792 CCCAACCGAATGAGGCCTTAT 60.134 52.381 6.77 5.07 33.69 1.73
5273 7176 2.654863 CCAACCGAATGAGGCCTTATT 58.345 47.619 21.95 21.95 33.69 1.40
5274 7177 2.618709 CCAACCGAATGAGGCCTTATTC 59.381 50.000 31.06 31.06 33.72 1.75
5284 7187 4.011698 TGAGGCCTTATTCGGTTAAAACC 58.988 43.478 6.77 1.54 45.76 3.27
5353 7257 5.180117 GCATACAGTATTGATGGTAGGCTTG 59.820 44.000 0.00 0.00 39.59 4.01
5354 7258 4.844349 ACAGTATTGATGGTAGGCTTGT 57.156 40.909 0.00 0.00 0.00 3.16
5380 7286 3.504520 GCTGTACTATACCCTCTCTGCTC 59.495 52.174 0.00 0.00 0.00 4.26
5384 7290 6.535540 TGTACTATACCCTCTCTGCTCTAAG 58.464 44.000 0.00 0.00 0.00 2.18
5414 7320 4.210328 CCAAATGGCGTTTGTCCTTTTTAC 59.790 41.667 25.81 0.00 44.58 2.01
5502 7408 4.352009 TCCCATAATGCTGTTTTCACCAT 58.648 39.130 0.00 0.00 0.00 3.55
5511 7417 7.801716 ATGCTGTTTTCACCATATAACGTAT 57.198 32.000 0.00 0.00 0.00 3.06
5541 7447 1.885887 GCTATTCAAACACCCACAGCA 59.114 47.619 0.00 0.00 0.00 4.41
5558 7464 2.045926 ACGGCCATGAGCAGGTTC 60.046 61.111 2.24 0.00 46.50 3.62
5559 7465 2.046023 CGGCCATGAGCAGGTTCA 60.046 61.111 2.24 0.00 46.50 3.18
5618 7525 5.232463 TGAAAGTTATGTTCGTGGTAGTCC 58.768 41.667 0.00 0.00 0.00 3.85
5696 7603 2.428544 TGATGGTTCATTTACCCCCG 57.571 50.000 0.00 0.00 37.39 5.73
5767 7674 2.880890 GCATTCGATTGTATGGAAGGCT 59.119 45.455 11.86 0.00 46.43 4.58
5770 7677 4.422073 TTCGATTGTATGGAAGGCTCAT 57.578 40.909 0.00 0.00 0.00 2.90
5985 7898 3.449018 AGCATCTACATATCCGCCCTAAG 59.551 47.826 0.00 0.00 0.00 2.18
6005 7918 1.080093 GTCCATGCGGTCTGTTCGA 60.080 57.895 0.00 0.00 0.00 3.71
6026 7939 1.461849 TACCCAAACCGGACCTGGT 60.462 57.895 9.46 12.11 46.67 4.00
6049 7962 1.076632 TTGGCCCAAACGTCCAAGT 60.077 52.632 0.00 0.00 35.17 3.16
6050 7963 0.684805 TTGGCCCAAACGTCCAAGTT 60.685 50.000 0.00 0.00 35.17 2.66
6062 7975 0.550914 TCCAAGTTGACTGGCACCTT 59.449 50.000 3.87 0.00 28.05 3.50
6063 7976 1.771854 TCCAAGTTGACTGGCACCTTA 59.228 47.619 3.87 0.00 27.10 2.69
6136 8050 1.676967 GTCGGACTGACGGTAGGGT 60.677 63.158 0.00 0.00 37.96 4.34
6151 8065 1.749258 GGGTCCACGCCAAATCTCC 60.749 63.158 0.00 0.00 0.00 3.71
6178 8093 4.109675 CCCCGTTCTGGCCCGATT 62.110 66.667 0.00 0.00 35.87 3.34
6219 8134 1.078356 CTGCCTCATCTGCACAGCT 60.078 57.895 0.00 0.00 34.46 4.24
6234 8149 1.997311 AGCTGCCACCATAGCTCCA 60.997 57.895 0.00 0.00 46.76 3.86
6236 8151 1.910722 CTGCCACCATAGCTCCACT 59.089 57.895 0.00 0.00 0.00 4.00
6238 8153 1.821332 GCCACCATAGCTCCACTGC 60.821 63.158 0.00 0.00 0.00 4.40
6245 8160 2.372264 CATAGCTCCACTGCCATTGTT 58.628 47.619 0.00 0.00 0.00 2.83
6265 8205 0.322098 CCCAACCCACAACATCGCTA 60.322 55.000 0.00 0.00 0.00 4.26
6330 8270 1.671850 CGGTACATGCAACTCCTTCGT 60.672 52.381 0.00 0.00 0.00 3.85
6362 8304 3.248363 TCGTGCTCTGTGTTTGATGAAAG 59.752 43.478 0.00 0.00 0.00 2.62
6371 8313 1.128692 GTTTGATGAAAGGTCCGAGCG 59.871 52.381 0.00 0.00 0.00 5.03
6403 8348 6.549364 TGTTCTTTTGGTCATTTGTAGGTCAT 59.451 34.615 0.00 0.00 0.00 3.06
6405 8350 6.303054 TCTTTTGGTCATTTGTAGGTCATCA 58.697 36.000 0.00 0.00 0.00 3.07
6495 8440 5.368500 TCGATTCGTCGGATTCGAACGAT 62.368 47.826 17.62 10.48 46.20 3.73
6498 8443 1.267882 TCGTCGGATTCGAACGATGAG 60.268 52.381 22.04 13.48 46.50 2.90
6564 8509 4.338879 AGCAAAAGGAGCATGTACTGAAT 58.661 39.130 0.00 0.00 0.00 2.57
6570 8515 5.426689 AGGAGCATGTACTGAATCTCAAA 57.573 39.130 0.00 0.00 0.00 2.69
6643 8588 5.724328 CAAGGCTTCTCTACAATGACTACA 58.276 41.667 0.00 0.00 0.00 2.74
6696 8672 0.100682 TCCGAGTCGCTAGTGAATGC 59.899 55.000 11.54 2.45 0.00 3.56
6762 8739 3.139077 GCGGGAAACTTTCTTTCTCTCA 58.861 45.455 1.57 0.00 0.00 3.27
6764 8741 4.935808 GCGGGAAACTTTCTTTCTCTCATA 59.064 41.667 1.57 0.00 0.00 2.15
6793 8770 0.527385 GCACGACTGCTCTCAGGATC 60.527 60.000 0.00 0.00 44.54 3.36
6794 8771 1.102154 CACGACTGCTCTCAGGATCT 58.898 55.000 0.00 0.00 44.54 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 25 3.508012 AGTGCTATCTCACTCGAGTTGTT 59.492 43.478 17.26 9.43 43.28 2.83
36 40 5.684704 AGTTATTGCATGTGGTAGTGCTAT 58.315 37.500 0.00 0.00 41.78 2.97
93 97 1.675310 CCTCAAATGCCTGCGGTGA 60.675 57.895 0.00 0.00 0.00 4.02
115 119 1.815421 GTCGGCGAGAACATGGCAT 60.815 57.895 11.20 0.00 33.59 4.40
120 124 1.215647 GTGGAGTCGGCGAGAACAT 59.784 57.895 11.20 0.00 0.00 2.71
140 144 3.767230 CACGTCGCTTGCCTCGTG 61.767 66.667 17.13 17.13 45.10 4.35
141 145 4.280494 ACACGTCGCTTGCCTCGT 62.280 61.111 0.00 4.51 36.99 4.18
142 146 3.470567 GACACGTCGCTTGCCTCG 61.471 66.667 0.00 3.46 0.00 4.63
148 152 2.338984 GGTGAGGACACGTCGCTT 59.661 61.111 0.00 0.00 46.77 4.68
151 155 0.797249 GAATCGGTGAGGACACGTCG 60.797 60.000 0.00 0.00 46.77 5.12
239 243 0.038801 GCTTCTTCAGGCAACAAGGC 60.039 55.000 0.00 0.00 44.61 4.35
250 254 1.266718 GACAATGCGGTTGCTTCTTCA 59.733 47.619 1.92 0.00 41.69 3.02
260 264 2.006888 CAAGTTATCGGACAATGCGGT 58.993 47.619 0.00 0.00 0.00 5.68
269 273 2.147958 GGTGCACAACAAGTTATCGGA 58.852 47.619 20.43 0.00 0.00 4.55
276 280 1.312371 AACGCAGGTGCACAACAAGT 61.312 50.000 20.43 8.70 42.21 3.16
281 285 2.769539 CCACAACGCAGGTGCACAA 61.770 57.895 20.43 0.00 42.21 3.33
297 301 1.398958 GGGGCACTTTCTTGTTGCCA 61.399 55.000 13.54 0.00 46.63 4.92
302 306 0.755327 GTGGTGGGGCACTTTCTTGT 60.755 55.000 0.00 0.00 34.40 3.16
305 309 2.520968 GGTGGTGGGGCACTTTCT 59.479 61.111 0.00 0.00 34.40 2.52
320 324 4.678743 GGCCCCAAGGAAAGCGGT 62.679 66.667 0.00 0.00 33.47 5.68
359 363 2.231478 TGGTGACTTCGTCAATCTCCTC 59.769 50.000 0.00 0.00 44.49 3.71
401 912 3.869246 TGTTCAGTTGAAGGAGACGTTTC 59.131 43.478 0.00 0.00 34.27 2.78
423 934 3.126001 TCAGTCTTTCCAGCGATGTTT 57.874 42.857 0.00 0.00 0.00 2.83
451 962 8.121305 TGCCACTAATGTTCACATTTTTCTAT 57.879 30.769 10.38 0.00 43.48 1.98
462 973 3.072330 TCTGGACTTGCCACTAATGTTCA 59.928 43.478 0.00 0.00 43.33 3.18
542 1053 9.529325 TTCTTTTACGATCGAATTGATACATCT 57.471 29.630 24.34 0.00 37.47 2.90
559 1070 7.318909 GCATTGATACATCGACATTCTTTTACG 59.681 37.037 0.00 0.00 0.00 3.18
566 1077 5.618056 ATGGCATTGATACATCGACATTC 57.382 39.130 0.00 0.00 0.00 2.67
569 1080 4.497842 GCAAATGGCATTGATACATCGACA 60.498 41.667 14.47 0.00 43.97 4.35
668 2229 0.741915 TTTCAAACGCCCAGTGTTCC 59.258 50.000 0.00 0.00 35.06 3.62
691 2252 5.492854 CAAATGCATTGCGTACTACTACTG 58.507 41.667 13.82 0.00 31.00 2.74
692 2253 5.718649 CAAATGCATTGCGTACTACTACT 57.281 39.130 13.82 0.00 31.00 2.57
708 2269 1.719600 AGACGAGTCTCAGCAAATGC 58.280 50.000 0.00 0.00 34.17 3.56
735 2310 5.240713 GTGCAAGTAGTACGGTACAGTAT 57.759 43.478 19.62 2.35 0.00 2.12
736 2311 4.685169 GTGCAAGTAGTACGGTACAGTA 57.315 45.455 19.62 1.38 0.00 2.74
737 2312 3.565905 GTGCAAGTAGTACGGTACAGT 57.434 47.619 19.62 3.62 0.00 3.55
745 2320 3.293311 TCAGGTTCGTGCAAGTAGTAC 57.707 47.619 0.00 0.00 0.00 2.73
746 2321 3.319972 AGTTCAGGTTCGTGCAAGTAGTA 59.680 43.478 0.00 0.00 0.00 1.82
747 2322 2.102588 AGTTCAGGTTCGTGCAAGTAGT 59.897 45.455 0.00 0.00 0.00 2.73
748 2323 2.476619 CAGTTCAGGTTCGTGCAAGTAG 59.523 50.000 0.00 0.00 0.00 2.57
749 2324 2.479837 CAGTTCAGGTTCGTGCAAGTA 58.520 47.619 0.00 0.00 0.00 2.24
750 2325 1.299541 CAGTTCAGGTTCGTGCAAGT 58.700 50.000 0.00 0.00 0.00 3.16
751 2326 0.040958 GCAGTTCAGGTTCGTGCAAG 60.041 55.000 0.00 0.00 34.18 4.01
752 2327 1.444119 GGCAGTTCAGGTTCGTGCAA 61.444 55.000 0.00 0.00 35.78 4.08
780 2355 1.757306 CACTGCTCCAGGTTGGACT 59.243 57.895 0.00 0.00 42.67 3.85
781 2356 1.302832 CCACTGCTCCAGGTTGGAC 60.303 63.158 0.00 0.00 42.67 4.02
782 2357 2.528818 CCCACTGCTCCAGGTTGGA 61.529 63.158 0.00 0.00 45.98 3.53
783 2358 2.034687 CCCACTGCTCCAGGTTGG 59.965 66.667 0.00 0.00 39.43 3.77
784 2359 2.034687 CCCCACTGCTCCAGGTTG 59.965 66.667 0.00 0.00 35.51 3.77
785 2360 3.971702 GCCCCACTGCTCCAGGTT 61.972 66.667 0.00 0.00 35.51 3.50
844 2423 2.186826 CCGGATTTGGATCGTGCCC 61.187 63.158 0.00 0.00 32.84 5.36
845 2424 2.834618 GCCGGATTTGGATCGTGCC 61.835 63.158 5.05 0.00 32.84 5.01
846 2425 2.715624 GCCGGATTTGGATCGTGC 59.284 61.111 5.05 0.00 32.84 5.34
847 2426 3.014036 CGCCGGATTTGGATCGTG 58.986 61.111 5.05 0.00 32.84 4.35
866 2445 2.927580 GCGGTGGAGTTGACTCGGA 61.928 63.158 5.16 0.00 43.76 4.55
868 2447 2.432628 GGCGGTGGAGTTGACTCG 60.433 66.667 5.16 0.00 43.76 4.18
1068 2654 3.483869 GAGGAGCCGCCCCATTCT 61.484 66.667 0.00 0.00 37.37 2.40
1157 2743 4.862823 GGGAGGAGGGAGGGTCGG 62.863 77.778 0.00 0.00 0.00 4.79
1159 2745 3.369388 AGGGGAGGAGGGAGGGTC 61.369 72.222 0.00 0.00 0.00 4.46
1168 2754 2.691779 GGACGGAGAGAGGGGAGGA 61.692 68.421 0.00 0.00 0.00 3.71
1169 2755 2.123640 GGACGGAGAGAGGGGAGG 60.124 72.222 0.00 0.00 0.00 4.30
1170 2756 2.123640 GGGACGGAGAGAGGGGAG 60.124 72.222 0.00 0.00 0.00 4.30
1183 2769 4.772687 GAAGGAACCGGGCGGGAC 62.773 72.222 18.95 10.76 39.97 4.46
1190 2776 1.287041 GGTCGAAACGAAGGAACCGG 61.287 60.000 0.00 0.00 37.72 5.28
1207 2793 3.432588 CGTGAGACGAGAGCGGGT 61.433 66.667 0.00 0.00 46.05 5.28
1315 2905 2.219325 GAGTGTGGAGAGCGTGAGGG 62.219 65.000 0.00 0.00 0.00 4.30
1319 2909 2.807045 GCGAGTGTGGAGAGCGTG 60.807 66.667 0.00 0.00 0.00 5.34
1348 2956 1.230635 AACGGCTGTCACTGACATGC 61.231 55.000 12.34 15.92 41.94 4.06
1362 2970 2.739293 GCTTTCATAGCTGTAACGGC 57.261 50.000 0.00 0.00 46.77 5.68
1553 3173 2.798283 CCAACAAGCTTGCAATCAGTTG 59.202 45.455 26.27 21.66 38.39 3.16
1559 3179 1.412079 TGGTCCAACAAGCTTGCAAT 58.588 45.000 26.27 10.18 0.00 3.56
1639 3260 1.600663 GCACGGATGTATGTCGAGAGG 60.601 57.143 0.00 0.00 0.00 3.69
1807 3428 1.482593 GTGGCACCTATGACTGTAGCT 59.517 52.381 6.29 0.00 33.48 3.32
1810 3431 4.041075 TGAAAAGTGGCACCTATGACTGTA 59.959 41.667 15.27 0.00 33.48 2.74
1864 3485 8.820831 AGCTCAGGCATACTATGTAAGAATTAT 58.179 33.333 0.00 0.00 41.70 1.28
1906 3578 6.647895 GGAAAGAAGGAAGTTCATACACGTTA 59.352 38.462 5.01 0.00 37.67 3.18
1931 3603 6.098124 TGCACATATTTCAGATTTTTAGGGGG 59.902 38.462 0.00 0.00 0.00 5.40
1932 3604 7.111247 TGCACATATTTCAGATTTTTAGGGG 57.889 36.000 0.00 0.00 0.00 4.79
1971 3643 7.864379 GCATGTGGATCCAAAATAATCTAAGTG 59.136 37.037 18.20 3.12 0.00 3.16
2081 3756 3.949754 CTCATGCAATTGAGAAAGGCCTA 59.050 43.478 5.16 0.00 44.88 3.93
2148 3824 6.790232 AAAAGGAGAGAATTGACACCAAAA 57.210 33.333 0.00 0.00 35.67 2.44
2153 3829 6.434340 ACCCAATAAAAGGAGAGAATTGACAC 59.566 38.462 0.00 0.00 30.77 3.67
2155 3831 7.468141 AACCCAATAAAAGGAGAGAATTGAC 57.532 36.000 0.00 0.00 30.77 3.18
2258 3935 7.618117 TGATAGAAGGCGAATAATATACCTCCA 59.382 37.037 0.00 0.00 0.00 3.86
2348 4025 8.593945 TCTCAGCAAACCATAATTAAGGAAAT 57.406 30.769 13.56 0.00 0.00 2.17
2351 4028 9.866655 ATTATCTCAGCAAACCATAATTAAGGA 57.133 29.630 13.56 0.00 0.00 3.36
2423 4108 3.709141 CCCTGGTGGAAAAGGAAGAAAAA 59.291 43.478 0.00 0.00 35.40 1.94
2536 4221 5.765677 GGGAGGGAAGAAACAGAAATATAGC 59.234 44.000 0.00 0.00 0.00 2.97
2565 4250 9.100197 TGGCTATATGACACAAGAGGATAAATA 57.900 33.333 0.00 0.00 0.00 1.40
2570 4255 5.367937 ACTTGGCTATATGACACAAGAGGAT 59.632 40.000 9.41 0.00 40.60 3.24
2573 4258 6.703607 CCTAACTTGGCTATATGACACAAGAG 59.296 42.308 9.41 0.00 40.60 2.85
2579 4264 6.156256 ACAGAACCTAACTTGGCTATATGACA 59.844 38.462 0.00 0.00 0.00 3.58
2601 4286 4.610490 AAGCTCAAAAGGTGCTAGCACAG 61.610 47.826 40.34 30.06 45.11 3.66
2602 4287 2.749466 AAGCTCAAAAGGTGCTAGCACA 60.749 45.455 40.34 23.01 45.11 4.57
2621 4306 6.936279 TGAGGGATAAGAACAGTAAGTCAAG 58.064 40.000 0.00 0.00 0.00 3.02
2622 4307 6.928348 TGAGGGATAAGAACAGTAAGTCAA 57.072 37.500 0.00 0.00 0.00 3.18
2660 4345 7.872993 CAGTTCAAAGTGATAGTAGAAACCTCA 59.127 37.037 0.00 0.00 0.00 3.86
2661 4346 7.873505 ACAGTTCAAAGTGATAGTAGAAACCTC 59.126 37.037 4.63 0.00 33.57 3.85
2677 4362 4.985409 GTCCTACTCACTGACAGTTCAAAG 59.015 45.833 5.04 4.15 0.00 2.77
2688 4373 9.930693 AAAGAGTTAAATAAGTCCTACTCACTG 57.069 33.333 0.00 0.00 36.52 3.66
2745 4430 1.580893 CACGTGGCGCATCAAATCG 60.581 57.895 10.83 1.53 0.00 3.34
2750 4435 3.047280 GGAACACGTGGCGCATCA 61.047 61.111 21.57 0.00 0.00 3.07
2751 4436 2.742372 AGGAACACGTGGCGCATC 60.742 61.111 21.57 9.44 0.00 3.91
2755 4440 1.157870 ACTTTCAGGAACACGTGGCG 61.158 55.000 21.57 3.07 0.00 5.69
2758 4443 4.307432 AGATGTACTTTCAGGAACACGTG 58.693 43.478 15.48 15.48 0.00 4.49
2761 4446 7.602644 TCATGTAAGATGTACTTTCAGGAACAC 59.397 37.037 0.00 0.00 41.18 3.32
2773 4458 7.047891 TGACCCAGATTTCATGTAAGATGTAC 58.952 38.462 0.00 0.00 0.00 2.90
2790 4475 4.974645 AGTGTTCTTTGTATGACCCAGA 57.025 40.909 0.00 0.00 0.00 3.86
2802 4487 8.918202 TCATGTGTATAGGAAAAGTGTTCTTT 57.082 30.769 0.00 0.00 44.59 2.52
2830 4515 7.127686 ACAACAACAAAACAGCGTTACTATAC 58.872 34.615 0.00 0.00 0.00 1.47
2840 4525 5.164954 TCCTGTAAACAACAACAAAACAGC 58.835 37.500 0.00 0.00 37.74 4.40
2842 4527 7.155328 ACATTCCTGTAAACAACAACAAAACA 58.845 30.769 0.00 0.00 37.74 2.83
2935 4620 4.602340 AACTGACTTACTGAATGACCGT 57.398 40.909 0.00 0.00 0.00 4.83
2971 4656 8.413229 CCAGAAATTCCTCTTAAAAGTTTGTGA 58.587 33.333 0.00 0.00 0.00 3.58
2994 4680 8.553459 TTTAGCTAAGAGAAGAACAATTCCAG 57.447 34.615 6.24 0.00 0.00 3.86
3001 4687 9.131791 ACCAAAAATTTAGCTAAGAGAAGAACA 57.868 29.630 6.24 0.00 0.00 3.18
3019 4705 8.632679 CACCAGCTATACATTATGACCAAAAAT 58.367 33.333 0.00 0.00 0.00 1.82
3031 4717 3.364460 TGGCAACACCAGCTATACATT 57.636 42.857 0.00 0.00 46.36 2.71
3071 4757 5.254842 GCAAGTGCAAAATGTTGTGTTAAC 58.745 37.500 0.00 0.00 41.59 2.01
3104 4790 5.307976 AGGTACCTTTGCAGATATATCAGCA 59.692 40.000 24.23 24.23 45.66 4.41
3156 4844 6.808008 AGCGATAATTTACCATCTGATTGG 57.192 37.500 0.00 5.06 42.82 3.16
3177 4865 8.343366 GGTATGTTCCTTTAGCTACATTTTAGC 58.657 37.037 3.03 0.00 40.67 3.09
3180 4868 7.179269 TGGGTATGTTCCTTTAGCTACATTTT 58.821 34.615 3.03 0.00 33.58 1.82
3386 5074 6.147821 CGATTATAATGTCCGCTTCCAGAAAT 59.852 38.462 1.78 0.00 0.00 2.17
3390 5078 4.556233 TCGATTATAATGTCCGCTTCCAG 58.444 43.478 1.78 0.00 0.00 3.86
3392 5080 4.748102 TGTTCGATTATAATGTCCGCTTCC 59.252 41.667 1.78 0.00 0.00 3.46
3397 5085 8.689251 ATACAGATGTTCGATTATAATGTCCG 57.311 34.615 1.78 0.69 0.00 4.79
3460 5153 1.260561 CACGCCGTAGACCATAATTGC 59.739 52.381 0.00 0.00 0.00 3.56
3477 5170 2.992543 CTCTGCTTTTCTTCCTCTCACG 59.007 50.000 0.00 0.00 0.00 4.35
3561 5254 3.815401 GCTTCTGCAGTGTTTTCTCCTAA 59.185 43.478 14.67 0.00 39.41 2.69
3563 5256 2.158696 AGCTTCTGCAGTGTTTTCTCCT 60.159 45.455 14.67 0.00 42.74 3.69
3635 5492 2.119801 AATCTGGAATTCGTGCAGCT 57.880 45.000 0.00 0.00 45.00 4.24
3642 5499 5.126061 AGGACCAAATGAAATCTGGAATTCG 59.874 40.000 0.00 0.00 36.15 3.34
3728 5590 8.034804 GGGATTGGGGATATTAATTCAAATTCG 58.965 37.037 0.00 0.00 0.00 3.34
3742 5605 1.585592 AGGAGACTGGGATTGGGGATA 59.414 52.381 0.00 0.00 41.13 2.59
3922 5800 9.478019 CATAGAACAAGCAGAAGTTTATAAACG 57.522 33.333 19.92 9.09 43.51 3.60
3928 5806 6.765989 ACACACATAGAACAAGCAGAAGTTTA 59.234 34.615 0.00 0.00 0.00 2.01
3935 5813 5.618056 ATTGACACACATAGAACAAGCAG 57.382 39.130 0.00 0.00 0.00 4.24
4017 5899 4.708726 AAAATACTGCAGCAAGATGGAC 57.291 40.909 15.27 0.00 0.00 4.02
4087 5969 5.695851 ACTCACAACAGAATGGATTTCAC 57.304 39.130 0.00 0.00 43.62 3.18
4118 6000 2.991250 ACTGATCCTGCATGGTTACAC 58.009 47.619 0.00 0.00 37.07 2.90
4153 6035 3.808618 GCAGCTAGTAATGGCCTGCTAAT 60.809 47.826 3.32 0.00 33.38 1.73
4159 6062 2.289945 GCTATGCAGCTAGTAATGGCCT 60.290 50.000 3.32 0.00 44.93 5.19
4270 6173 7.929245 GGCAAAATAAAGAAGTGTCCCTTAAAA 59.071 33.333 0.00 0.00 32.03 1.52
4295 6198 2.572191 ATTGCGCATTTGAGACATGG 57.428 45.000 12.75 0.00 0.00 3.66
4311 6214 6.830912 TCCATGGACAGATCTACCTTAATTG 58.169 40.000 11.44 8.18 0.00 2.32
4316 6219 5.669447 AGAATTCCATGGACAGATCTACCTT 59.331 40.000 15.91 9.23 0.00 3.50
4361 6264 7.280205 AGGCTCATATAAACGAACCAGTTAAAG 59.720 37.037 0.00 0.00 33.41 1.85
4384 6287 3.499157 TCTTGCATCAAAATTTTGCAGGC 59.501 39.130 23.36 23.13 46.10 4.85
4385 6288 5.237779 ACTTCTTGCATCAAAATTTTGCAGG 59.762 36.000 23.36 19.11 46.10 4.85
4467 6370 1.288127 CTCTTGCTTGGCAACCTGC 59.712 57.895 0.00 0.00 43.99 4.85
4474 6377 3.243334 GGAAGAATATGCTCTTGCTTGGC 60.243 47.826 2.36 0.00 39.82 4.52
4500 6403 0.539438 ATTTCCGCCAGCTTGACCAA 60.539 50.000 0.00 0.00 0.00 3.67
4527 6430 4.278419 ACAAGCTCATGTGGAAGTTTAACC 59.722 41.667 0.00 0.00 30.82 2.85
4581 6484 7.526142 AGTTAGAACTTACATGTCAGAGTGA 57.474 36.000 13.93 0.00 35.21 3.41
4603 6506 7.445402 ACACACATAAAAGCATAGTTCAGAAGT 59.555 33.333 0.00 0.00 0.00 3.01
4609 6512 6.898041 TGTCACACACATAAAAGCATAGTTC 58.102 36.000 0.00 0.00 0.00 3.01
4628 6531 9.241317 CATTCTTTAATCAATAGGCAATGTCAC 57.759 33.333 0.00 0.00 0.00 3.67
4629 6532 8.415553 CCATTCTTTAATCAATAGGCAATGTCA 58.584 33.333 0.00 0.00 0.00 3.58
4664 6567 6.586082 CAGCAACCTGTTATATTTGACAAACC 59.414 38.462 1.94 0.00 34.31 3.27
4714 6617 5.008217 CCAACAAAAGAGTCGTACCATTTGA 59.992 40.000 10.86 0.00 33.30 2.69
4724 6627 6.018262 TGTCAGAATAACCAACAAAAGAGTCG 60.018 38.462 0.00 0.00 0.00 4.18
4727 6630 7.264373 ACTGTCAGAATAACCAACAAAAGAG 57.736 36.000 6.91 0.00 0.00 2.85
4740 6643 8.152898 AGCAGCAATCAATATACTGTCAGAATA 58.847 33.333 6.91 0.00 0.00 1.75
4743 6646 5.756833 CAGCAGCAATCAATATACTGTCAGA 59.243 40.000 6.91 0.00 0.00 3.27
4745 6648 5.525012 GTCAGCAGCAATCAATATACTGTCA 59.475 40.000 0.00 0.00 0.00 3.58
4747 6650 5.678583 AGTCAGCAGCAATCAATATACTGT 58.321 37.500 0.00 0.00 0.00 3.55
4755 6658 2.574006 AGGAAGTCAGCAGCAATCAA 57.426 45.000 0.00 0.00 0.00 2.57
4772 6675 0.604511 ACAAACGCGGGAGGTAAAGG 60.605 55.000 12.47 0.00 0.00 3.11
4821 6724 4.164796 TGGATGAAGATATGAACACTGCCT 59.835 41.667 0.00 0.00 0.00 4.75
4831 6734 3.252701 GCCTGCTTGTGGATGAAGATATG 59.747 47.826 0.00 0.00 0.00 1.78
4832 6735 3.117776 TGCCTGCTTGTGGATGAAGATAT 60.118 43.478 0.00 0.00 0.00 1.63
4836 6739 0.809385 CTGCCTGCTTGTGGATGAAG 59.191 55.000 0.00 0.00 0.00 3.02
4905 6808 4.966965 AGATTTGCTCTTCTGCATCAAG 57.033 40.909 0.00 0.00 42.96 3.02
4908 6811 4.155462 TGACAAGATTTGCTCTTCTGCATC 59.845 41.667 0.00 0.00 42.48 3.91
4935 6838 1.064463 TCCATCCATTGGTGAGCTTCC 60.064 52.381 1.86 0.00 46.52 3.46
4938 6841 1.848388 TCATCCATCCATTGGTGAGCT 59.152 47.619 1.86 0.00 46.52 4.09
4997 6900 5.047802 ACAAGATGGACAACTTAGCAAATGG 60.048 40.000 0.00 0.00 0.00 3.16
5009 6912 4.704540 ACAACAAGTTCACAAGATGGACAA 59.295 37.500 0.00 0.00 39.64 3.18
5011 6914 4.900635 ACAACAAGTTCACAAGATGGAC 57.099 40.909 0.00 0.00 37.02 4.02
5035 6938 6.021030 ACAGAGGGAGTACTAAATACCAACA 58.979 40.000 0.00 0.00 33.85 3.33
5050 6953 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
5051 6954 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
5052 6955 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
5053 6956 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
5060 6963 9.110502 CCTTCCTAAACGCTCTTATATTTCTTT 57.889 33.333 0.00 0.00 0.00 2.52
5061 6964 7.715686 CCCTTCCTAAACGCTCTTATATTTCTT 59.284 37.037 0.00 0.00 0.00 2.52
5062 6965 7.070821 TCCCTTCCTAAACGCTCTTATATTTCT 59.929 37.037 0.00 0.00 0.00 2.52
5063 6966 7.215085 TCCCTTCCTAAACGCTCTTATATTTC 58.785 38.462 0.00 0.00 0.00 2.17
5064 6967 7.133133 TCCCTTCCTAAACGCTCTTATATTT 57.867 36.000 0.00 0.00 0.00 1.40
5065 6968 6.326843 ACTCCCTTCCTAAACGCTCTTATATT 59.673 38.462 0.00 0.00 0.00 1.28
5066 6969 5.839606 ACTCCCTTCCTAAACGCTCTTATAT 59.160 40.000 0.00 0.00 0.00 0.86
5067 6970 5.206587 ACTCCCTTCCTAAACGCTCTTATA 58.793 41.667 0.00 0.00 0.00 0.98
5068 6971 4.031611 ACTCCCTTCCTAAACGCTCTTAT 58.968 43.478 0.00 0.00 0.00 1.73
5069 6972 3.438183 ACTCCCTTCCTAAACGCTCTTA 58.562 45.455 0.00 0.00 0.00 2.10
5070 6973 2.258109 ACTCCCTTCCTAAACGCTCTT 58.742 47.619 0.00 0.00 0.00 2.85
5071 6974 1.939980 ACTCCCTTCCTAAACGCTCT 58.060 50.000 0.00 0.00 0.00 4.09
5072 6975 2.759535 AGTACTCCCTTCCTAAACGCTC 59.240 50.000 0.00 0.00 0.00 5.03
5073 6976 2.817665 AGTACTCCCTTCCTAAACGCT 58.182 47.619 0.00 0.00 0.00 5.07
5074 6977 3.056322 TGAAGTACTCCCTTCCTAAACGC 60.056 47.826 0.00 0.00 40.11 4.84
5075 6978 4.220163 AGTGAAGTACTCCCTTCCTAAACG 59.780 45.833 0.00 0.00 40.11 3.60
5076 6979 5.480205 CAGTGAAGTACTCCCTTCCTAAAC 58.520 45.833 0.00 0.00 40.11 2.01
5077 6980 4.530946 CCAGTGAAGTACTCCCTTCCTAAA 59.469 45.833 0.00 0.00 40.11 1.85
5078 6981 4.094476 CCAGTGAAGTACTCCCTTCCTAA 58.906 47.826 0.00 0.00 40.11 2.69
5079 6982 3.565890 CCCAGTGAAGTACTCCCTTCCTA 60.566 52.174 0.00 0.00 40.11 2.94
5080 6983 2.541466 CCAGTGAAGTACTCCCTTCCT 58.459 52.381 0.00 0.00 40.11 3.36
5081 6984 1.555533 CCCAGTGAAGTACTCCCTTCC 59.444 57.143 0.00 0.00 40.11 3.46
5082 6985 2.258109 ACCCAGTGAAGTACTCCCTTC 58.742 52.381 0.00 0.00 37.60 3.46
5083 6986 2.372172 CAACCCAGTGAAGTACTCCCTT 59.628 50.000 0.00 0.00 37.60 3.95
5084 6987 1.978580 CAACCCAGTGAAGTACTCCCT 59.021 52.381 0.00 0.00 37.60 4.20
5085 6988 1.003233 CCAACCCAGTGAAGTACTCCC 59.997 57.143 0.00 0.00 37.60 4.30
5086 6989 1.975680 TCCAACCCAGTGAAGTACTCC 59.024 52.381 0.00 0.00 37.60 3.85
5087 6990 2.613223 GCTCCAACCCAGTGAAGTACTC 60.613 54.545 0.00 0.00 37.60 2.59
5088 6991 1.348036 GCTCCAACCCAGTGAAGTACT 59.652 52.381 0.00 0.00 41.36 2.73
5131 7034 1.100510 GGGATTAAACGAACAGGGCC 58.899 55.000 0.00 0.00 0.00 5.80
5132 7035 1.100510 GGGGATTAAACGAACAGGGC 58.899 55.000 0.00 0.00 0.00 5.19
5133 7036 2.640184 GAGGGGATTAAACGAACAGGG 58.360 52.381 0.00 0.00 0.00 4.45
5134 7037 2.277084 CGAGGGGATTAAACGAACAGG 58.723 52.381 0.00 0.00 0.00 4.00
5135 7038 1.664151 GCGAGGGGATTAAACGAACAG 59.336 52.381 0.00 0.00 0.00 3.16
5136 7039 1.676615 GGCGAGGGGATTAAACGAACA 60.677 52.381 0.00 0.00 0.00 3.18
5137 7040 1.012086 GGCGAGGGGATTAAACGAAC 58.988 55.000 0.00 0.00 0.00 3.95
5138 7041 0.614294 TGGCGAGGGGATTAAACGAA 59.386 50.000 0.00 0.00 0.00 3.85
5139 7042 0.108041 GTGGCGAGGGGATTAAACGA 60.108 55.000 0.00 0.00 0.00 3.85
5140 7043 0.391927 TGTGGCGAGGGGATTAAACG 60.392 55.000 0.00 0.00 0.00 3.60
5141 7044 1.379527 CTGTGGCGAGGGGATTAAAC 58.620 55.000 0.00 0.00 0.00 2.01
5142 7045 0.254747 CCTGTGGCGAGGGGATTAAA 59.745 55.000 0.00 0.00 0.00 1.52
5143 7046 1.912220 CCTGTGGCGAGGGGATTAA 59.088 57.895 0.00 0.00 0.00 1.40
5144 7047 3.642078 CCTGTGGCGAGGGGATTA 58.358 61.111 0.00 0.00 0.00 1.75
5150 7053 2.124570 CCAATCCCTGTGGCGAGG 60.125 66.667 0.00 0.00 0.00 4.63
5151 7054 1.153289 CTCCAATCCCTGTGGCGAG 60.153 63.158 0.00 0.00 35.99 5.03
5152 7055 2.669133 CCTCCAATCCCTGTGGCGA 61.669 63.158 0.00 0.00 35.99 5.54
5153 7056 2.124570 CCTCCAATCCCTGTGGCG 60.125 66.667 0.00 0.00 35.99 5.69
5154 7057 2.276740 CCCTCCAATCCCTGTGGC 59.723 66.667 0.00 0.00 35.99 5.01
5155 7058 0.995675 ATCCCCTCCAATCCCTGTGG 60.996 60.000 0.00 0.00 37.51 4.17
5156 7059 0.929244 AATCCCCTCCAATCCCTGTG 59.071 55.000 0.00 0.00 0.00 3.66
5157 7060 0.929244 CAATCCCCTCCAATCCCTGT 59.071 55.000 0.00 0.00 0.00 4.00
5158 7061 0.186873 CCAATCCCCTCCAATCCCTG 59.813 60.000 0.00 0.00 0.00 4.45
5159 7062 1.001140 CCCAATCCCCTCCAATCCCT 61.001 60.000 0.00 0.00 0.00 4.20
5160 7063 1.543690 CCCAATCCCCTCCAATCCC 59.456 63.158 0.00 0.00 0.00 3.85
5161 7064 0.998945 TCCCCAATCCCCTCCAATCC 60.999 60.000 0.00 0.00 0.00 3.01
5162 7065 0.480252 CTCCCCAATCCCCTCCAATC 59.520 60.000 0.00 0.00 0.00 2.67
5163 7066 1.001140 CCTCCCCAATCCCCTCCAAT 61.001 60.000 0.00 0.00 0.00 3.16
5164 7067 1.622442 CCTCCCCAATCCCCTCCAA 60.622 63.158 0.00 0.00 0.00 3.53
5165 7068 2.044450 CCTCCCCAATCCCCTCCA 59.956 66.667 0.00 0.00 0.00 3.86
5166 7069 1.221909 AAACCTCCCCAATCCCCTCC 61.222 60.000 0.00 0.00 0.00 4.30
5167 7070 0.033109 CAAACCTCCCCAATCCCCTC 60.033 60.000 0.00 0.00 0.00 4.30
5168 7071 0.479589 TCAAACCTCCCCAATCCCCT 60.480 55.000 0.00 0.00 0.00 4.79
5169 7072 0.033109 CTCAAACCTCCCCAATCCCC 60.033 60.000 0.00 0.00 0.00 4.81
5170 7073 0.033109 CCTCAAACCTCCCCAATCCC 60.033 60.000 0.00 0.00 0.00 3.85
5171 7074 0.999712 TCCTCAAACCTCCCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
5172 7075 1.064389 CCTCCTCAAACCTCCCCAATC 60.064 57.143 0.00 0.00 0.00 2.67
5173 7076 1.002857 CCTCCTCAAACCTCCCCAAT 58.997 55.000 0.00 0.00 0.00 3.16
5174 7077 0.104144 TCCTCCTCAAACCTCCCCAA 60.104 55.000 0.00 0.00 0.00 4.12
5175 7078 0.121197 ATCCTCCTCAAACCTCCCCA 59.879 55.000 0.00 0.00 0.00 4.96
5176 7079 1.299939 AATCCTCCTCAAACCTCCCC 58.700 55.000 0.00 0.00 0.00 4.81
5177 7080 3.092301 CAAAATCCTCCTCAAACCTCCC 58.908 50.000 0.00 0.00 0.00 4.30
5178 7081 3.759086 GTCAAAATCCTCCTCAAACCTCC 59.241 47.826 0.00 0.00 0.00 4.30
5179 7082 4.657013 AGTCAAAATCCTCCTCAAACCTC 58.343 43.478 0.00 0.00 0.00 3.85
5180 7083 4.731313 AGTCAAAATCCTCCTCAAACCT 57.269 40.909 0.00 0.00 0.00 3.50
5181 7084 4.559502 GCAAGTCAAAATCCTCCTCAAACC 60.560 45.833 0.00 0.00 0.00 3.27
5182 7085 4.037923 TGCAAGTCAAAATCCTCCTCAAAC 59.962 41.667 0.00 0.00 0.00 2.93
5183 7086 4.214310 TGCAAGTCAAAATCCTCCTCAAA 58.786 39.130 0.00 0.00 0.00 2.69
5184 7087 3.831323 TGCAAGTCAAAATCCTCCTCAA 58.169 40.909 0.00 0.00 0.00 3.02
5185 7088 3.507162 TGCAAGTCAAAATCCTCCTCA 57.493 42.857 0.00 0.00 0.00 3.86
5186 7089 3.192212 CCTTGCAAGTCAAAATCCTCCTC 59.808 47.826 24.35 0.00 33.65 3.71
5187 7090 3.160269 CCTTGCAAGTCAAAATCCTCCT 58.840 45.455 24.35 0.00 33.65 3.69
5188 7091 2.232208 CCCTTGCAAGTCAAAATCCTCC 59.768 50.000 24.35 0.00 33.65 4.30
5189 7092 3.157087 TCCCTTGCAAGTCAAAATCCTC 58.843 45.455 24.35 0.00 33.65 3.71
5190 7093 3.243359 TCCCTTGCAAGTCAAAATCCT 57.757 42.857 24.35 0.00 33.65 3.24
5191 7094 4.541973 AATCCCTTGCAAGTCAAAATCC 57.458 40.909 24.35 0.00 33.65 3.01
5192 7095 7.278646 GGATTAAATCCCTTGCAAGTCAAAATC 59.721 37.037 24.35 20.70 43.88 2.17
5193 7096 7.105588 GGATTAAATCCCTTGCAAGTCAAAAT 58.894 34.615 24.35 14.96 43.88 1.82
5194 7097 6.463360 GGATTAAATCCCTTGCAAGTCAAAA 58.537 36.000 24.35 11.23 43.88 2.44
5195 7098 6.036577 GGATTAAATCCCTTGCAAGTCAAA 57.963 37.500 24.35 10.27 43.88 2.69
5196 7099 5.659440 GGATTAAATCCCTTGCAAGTCAA 57.341 39.130 24.35 10.08 43.88 3.18
5209 7112 4.749048 AGGGATTGGAGGGGATTAAATC 57.251 45.455 0.00 0.00 0.00 2.17
5210 7113 5.042676 TGAAAGGGATTGGAGGGGATTAAAT 60.043 40.000 0.00 0.00 0.00 1.40
5211 7114 4.296313 TGAAAGGGATTGGAGGGGATTAAA 59.704 41.667 0.00 0.00 0.00 1.52
5212 7115 3.861695 TGAAAGGGATTGGAGGGGATTAA 59.138 43.478 0.00 0.00 0.00 1.40
5213 7116 3.480012 TGAAAGGGATTGGAGGGGATTA 58.520 45.455 0.00 0.00 0.00 1.75
5214 7117 2.297044 TGAAAGGGATTGGAGGGGATT 58.703 47.619 0.00 0.00 0.00 3.01
5215 7118 2.000290 TGAAAGGGATTGGAGGGGAT 58.000 50.000 0.00 0.00 0.00 3.85
5216 7119 1.766951 TTGAAAGGGATTGGAGGGGA 58.233 50.000 0.00 0.00 0.00 4.81
5217 7120 2.179427 GTTTGAAAGGGATTGGAGGGG 58.821 52.381 0.00 0.00 0.00 4.79
5218 7121 2.179427 GGTTTGAAAGGGATTGGAGGG 58.821 52.381 0.00 0.00 0.00 4.30
5219 7122 3.092301 GAGGTTTGAAAGGGATTGGAGG 58.908 50.000 0.00 0.00 0.00 4.30
5220 7123 4.013050 GAGAGGTTTGAAAGGGATTGGAG 58.987 47.826 0.00 0.00 0.00 3.86
5221 7124 3.245264 GGAGAGGTTTGAAAGGGATTGGA 60.245 47.826 0.00 0.00 0.00 3.53
5222 7125 3.092301 GGAGAGGTTTGAAAGGGATTGG 58.908 50.000 0.00 0.00 0.00 3.16
5223 7126 3.766545 TGGAGAGGTTTGAAAGGGATTG 58.233 45.455 0.00 0.00 0.00 2.67
5224 7127 4.469469 TTGGAGAGGTTTGAAAGGGATT 57.531 40.909 0.00 0.00 0.00 3.01
5225 7128 4.152647 GTTTGGAGAGGTTTGAAAGGGAT 58.847 43.478 0.00 0.00 0.00 3.85
5226 7129 3.562182 GTTTGGAGAGGTTTGAAAGGGA 58.438 45.455 0.00 0.00 0.00 4.20
5227 7130 2.628178 GGTTTGGAGAGGTTTGAAAGGG 59.372 50.000 0.00 0.00 0.00 3.95
5228 7131 2.628178 GGGTTTGGAGAGGTTTGAAAGG 59.372 50.000 0.00 0.00 0.00 3.11
5229 7132 3.566351 AGGGTTTGGAGAGGTTTGAAAG 58.434 45.455 0.00 0.00 0.00 2.62
5230 7133 3.680777 AGGGTTTGGAGAGGTTTGAAA 57.319 42.857 0.00 0.00 0.00 2.69
5231 7134 3.181437 GGTAGGGTTTGGAGAGGTTTGAA 60.181 47.826 0.00 0.00 0.00 2.69
5232 7135 2.374170 GGTAGGGTTTGGAGAGGTTTGA 59.626 50.000 0.00 0.00 0.00 2.69
5233 7136 2.554564 GGGTAGGGTTTGGAGAGGTTTG 60.555 54.545 0.00 0.00 0.00 2.93
5234 7137 1.709115 GGGTAGGGTTTGGAGAGGTTT 59.291 52.381 0.00 0.00 0.00 3.27
5235 7138 1.369403 GGGTAGGGTTTGGAGAGGTT 58.631 55.000 0.00 0.00 0.00 3.50
5236 7139 0.195096 TGGGTAGGGTTTGGAGAGGT 59.805 55.000 0.00 0.00 0.00 3.85
5237 7140 1.004394 GTTGGGTAGGGTTTGGAGAGG 59.996 57.143 0.00 0.00 0.00 3.69
5238 7141 1.004394 GGTTGGGTAGGGTTTGGAGAG 59.996 57.143 0.00 0.00 0.00 3.20
5239 7142 1.069775 GGTTGGGTAGGGTTTGGAGA 58.930 55.000 0.00 0.00 0.00 3.71
5240 7143 0.322187 CGGTTGGGTAGGGTTTGGAG 60.322 60.000 0.00 0.00 0.00 3.86
5241 7144 0.767446 TCGGTTGGGTAGGGTTTGGA 60.767 55.000 0.00 0.00 0.00 3.53
5242 7145 0.110869 TTCGGTTGGGTAGGGTTTGG 59.889 55.000 0.00 0.00 0.00 3.28
5243 7146 1.816224 CATTCGGTTGGGTAGGGTTTG 59.184 52.381 0.00 0.00 0.00 2.93
5244 7147 1.706305 TCATTCGGTTGGGTAGGGTTT 59.294 47.619 0.00 0.00 0.00 3.27
5245 7148 1.280998 CTCATTCGGTTGGGTAGGGTT 59.719 52.381 0.00 0.00 0.00 4.11
5246 7149 0.909623 CTCATTCGGTTGGGTAGGGT 59.090 55.000 0.00 0.00 0.00 4.34
5247 7150 0.180406 CCTCATTCGGTTGGGTAGGG 59.820 60.000 0.00 0.00 0.00 3.53
5248 7151 0.463833 GCCTCATTCGGTTGGGTAGG 60.464 60.000 0.00 0.00 0.00 3.18
5249 7152 0.463833 GGCCTCATTCGGTTGGGTAG 60.464 60.000 0.00 0.00 0.00 3.18
5250 7153 0.912487 AGGCCTCATTCGGTTGGGTA 60.912 55.000 0.00 0.00 0.00 3.69
5251 7154 1.789576 AAGGCCTCATTCGGTTGGGT 61.790 55.000 5.23 0.00 0.00 4.51
5252 7155 0.254747 TAAGGCCTCATTCGGTTGGG 59.745 55.000 5.23 0.00 0.00 4.12
5253 7156 2.348411 ATAAGGCCTCATTCGGTTGG 57.652 50.000 5.23 0.00 0.00 3.77
5254 7157 2.287915 CGAATAAGGCCTCATTCGGTTG 59.712 50.000 34.60 13.68 46.06 3.77
5255 7158 2.561569 CGAATAAGGCCTCATTCGGTT 58.438 47.619 34.60 8.79 46.06 4.44
5256 7159 2.240493 CGAATAAGGCCTCATTCGGT 57.760 50.000 34.60 9.54 46.06 4.69
5259 7162 6.263344 GTTTTAACCGAATAAGGCCTCATTC 58.737 40.000 17.73 17.73 33.69 2.67
5260 7163 5.126545 GGTTTTAACCGAATAAGGCCTCATT 59.873 40.000 5.23 1.78 39.66 2.57
5261 7164 4.643334 GGTTTTAACCGAATAAGGCCTCAT 59.357 41.667 5.23 0.00 39.66 2.90
5262 7165 4.011698 GGTTTTAACCGAATAAGGCCTCA 58.988 43.478 5.23 0.00 39.66 3.86
5263 7166 4.627611 GGTTTTAACCGAATAAGGCCTC 57.372 45.455 5.23 0.00 39.66 4.70
5284 7187 3.057245 TGATCTGGAGTGTCTGTTTCGAG 60.057 47.826 0.00 0.00 0.00 4.04
5286 7189 3.303881 TGATCTGGAGTGTCTGTTTCG 57.696 47.619 0.00 0.00 0.00 3.46
5318 7222 7.371126 TCAATACTGTATGCACGATTTTCAA 57.629 32.000 0.22 0.00 0.00 2.69
5322 7226 5.822519 ACCATCAATACTGTATGCACGATTT 59.177 36.000 0.22 0.00 0.00 2.17
5353 7257 3.822167 GAGAGGGTATAGTACAGCTCCAC 59.178 52.174 0.00 0.00 0.00 4.02
5354 7258 3.722627 AGAGAGGGTATAGTACAGCTCCA 59.277 47.826 0.00 0.00 0.00 3.86
5380 7286 3.405170 CGCCATTTGGTGCTTACTTAG 57.595 47.619 0.00 0.00 39.04 2.18
5414 7320 1.960689 AGACCAATTTGTTTCCCCGTG 59.039 47.619 0.00 0.00 0.00 4.94
5448 7354 9.276791 TCAGGGCAATTCTCAGATTCTATATAT 57.723 33.333 0.00 0.00 0.00 0.86
5449 7355 8.670521 TCAGGGCAATTCTCAGATTCTATATA 57.329 34.615 0.00 0.00 0.00 0.86
5481 7387 4.741321 ATGGTGAAAACAGCATTATGGG 57.259 40.909 8.72 0.00 39.93 4.00
5511 7417 7.442666 GTGGGTGTTTGAATAGCCAAATTTTAA 59.557 33.333 12.06 0.00 46.76 1.52
5541 7447 2.045926 GAACCTGCTCATGGCCGT 60.046 61.111 0.00 0.00 40.92 5.68
5558 7464 3.875369 GCCATTTAGAGCCCCATCCTATG 60.875 52.174 0.00 0.00 0.00 2.23
5559 7465 2.310052 GCCATTTAGAGCCCCATCCTAT 59.690 50.000 0.00 0.00 0.00 2.57
5618 7525 9.683069 AAAACTAACTGCAAAGAATATTCACTG 57.317 29.630 17.56 13.75 0.00 3.66
5696 7603 6.642540 CCTTCCACTTTCAGCTGTAAAATTTC 59.357 38.462 14.67 0.00 0.00 2.17
5758 7665 2.629017 AAACCCAATGAGCCTTCCAT 57.371 45.000 0.00 0.00 0.00 3.41
5985 7898 2.740714 GAACAGACCGCATGGACGC 61.741 63.158 0.00 0.00 39.21 5.19
6005 7918 0.909623 CAGGTCCGGTTTGGGTAGAT 59.090 55.000 0.00 0.00 38.76 1.98
6026 7939 1.320507 GGACGTTTGGGCCAAGTTTA 58.679 50.000 19.90 0.91 0.00 2.01
6049 7962 2.026636 GGGTATGTAAGGTGCCAGTCAA 60.027 50.000 0.00 0.00 0.00 3.18
6050 7963 1.557832 GGGTATGTAAGGTGCCAGTCA 59.442 52.381 0.00 0.00 0.00 3.41
6062 7975 4.040339 CCTCACATATGTGCTGGGTATGTA 59.960 45.833 27.71 8.40 45.25 2.29
6063 7976 3.181451 CCTCACATATGTGCTGGGTATGT 60.181 47.826 27.71 0.00 45.25 2.29
6131 8045 0.539986 GAGATTTGGCGTGGACCCTA 59.460 55.000 0.00 0.00 0.00 3.53
6136 8050 0.690192 TTCAGGAGATTTGGCGTGGA 59.310 50.000 0.00 0.00 0.00 4.02
6178 8093 0.415429 AGAGGAGAGGAAGAGGGCAA 59.585 55.000 0.00 0.00 0.00 4.52
6219 8134 1.603842 CAGTGGAGCTATGGTGGCA 59.396 57.895 0.00 0.00 0.00 4.92
6245 8160 1.602323 GCGATGTTGTGGGTTGGGA 60.602 57.895 0.00 0.00 0.00 4.37
6306 8246 1.600107 GAGTTGCATGTACCGGGGA 59.400 57.895 6.32 0.00 0.00 4.81
6330 8270 2.163613 CACAGAGCACGAGGTGTATGTA 59.836 50.000 0.00 0.00 35.75 2.29
6495 8440 5.043737 TCATCATCATTTCAGCATCCTCA 57.956 39.130 0.00 0.00 0.00 3.86
6498 8443 5.620205 GCTCATCATCATCATTTCAGCATCC 60.620 44.000 0.00 0.00 0.00 3.51
6564 8509 4.584874 TGCCATTTATCGAACCTTTGAGA 58.415 39.130 0.00 0.00 0.00 3.27
6570 8515 2.771943 TCTCCTGCCATTTATCGAACCT 59.228 45.455 0.00 0.00 0.00 3.50
6617 8562 2.028112 TCATTGTAGAGAAGCCTTGCGT 60.028 45.455 0.00 0.00 0.00 5.24
6643 8588 2.026262 AGTATGTTGGGCTCGGTTTGAT 60.026 45.455 0.00 0.00 0.00 2.57
6696 8672 1.770658 TGTTATCAGCCTCCTCCATGG 59.229 52.381 4.97 4.97 37.10 3.66
6713 8689 3.117888 TCCTTCCTCAGCTTGAAGTTGTT 60.118 43.478 8.86 0.00 36.98 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.