Multiple sequence alignment - TraesCS4B01G247500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G247500 chr4B 100.000 2755 0 0 1 2755 512336304 512333550 0.000000e+00 5088.0
1 TraesCS4B01G247500 chr4A 93.243 888 46 8 788 1671 48275165 48276042 0.000000e+00 1295.0
2 TraesCS4B01G247500 chr4A 96.009 426 16 1 1066 1490 675854929 675855354 0.000000e+00 691.0
3 TraesCS4B01G247500 chr4A 82.839 641 91 12 37 658 48274175 48274815 8.620000e-155 556.0
4 TraesCS4B01G247500 chr4A 81.051 533 61 18 1970 2466 48277257 48277785 3.330000e-104 388.0
5 TraesCS4B01G247500 chr4A 84.615 221 14 6 1759 1959 48276222 48276442 4.650000e-48 202.0
6 TraesCS4B01G247500 chr4A 97.368 38 1 0 1 38 273662031 273662068 6.370000e-07 65.8
7 TraesCS4B01G247500 chr4D 91.796 902 49 11 776 1671 415584015 415583133 0.000000e+00 1232.0
8 TraesCS4B01G247500 chr4D 97.368 38 1 0 1 38 170224830 170224793 6.370000e-07 65.8
9 TraesCS4B01G247500 chr7B 89.144 783 57 20 795 1557 16135778 16136552 0.000000e+00 950.0
10 TraesCS4B01G247500 chr7B 88.717 709 54 22 935 1623 13329716 13329014 0.000000e+00 843.0
11 TraesCS4B01G247500 chr7B 87.483 719 64 22 790 1492 14980497 14981205 0.000000e+00 806.0
12 TraesCS4B01G247500 chr7A 84.725 910 75 33 795 1667 76954422 76953540 0.000000e+00 852.0
13 TraesCS4B01G247500 chr7D 87.079 712 54 18 944 1623 70905451 70904746 0.000000e+00 771.0
14 TraesCS4B01G247500 chrUn 86.883 709 60 21 807 1493 84318075 84317378 0.000000e+00 763.0
15 TraesCS4B01G247500 chr5A 97.368 38 1 0 1 38 84455923 84455960 6.370000e-07 65.8
16 TraesCS4B01G247500 chr2B 97.368 38 1 0 1 38 772360627 772360590 6.370000e-07 65.8
17 TraesCS4B01G247500 chr2B 97.368 38 1 0 1 38 772369708 772369671 6.370000e-07 65.8
18 TraesCS4B01G247500 chr1B 97.368 38 1 0 1 38 278463972 278464009 6.370000e-07 65.8
19 TraesCS4B01G247500 chr1B 97.297 37 1 0 1 37 134570380 134570416 2.290000e-06 63.9
20 TraesCS4B01G247500 chr3D 97.297 37 1 0 1 37 236647631 236647595 2.290000e-06 63.9
21 TraesCS4B01G247500 chr1A 97.297 37 1 0 1 37 11976219 11976183 2.290000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G247500 chr4B 512333550 512336304 2754 True 5088.00 5088 100.000 1 2755 1 chr4B.!!$R1 2754
1 TraesCS4B01G247500 chr4A 48274175 48277785 3610 False 610.25 1295 85.437 37 2466 4 chr4A.!!$F3 2429
2 TraesCS4B01G247500 chr4D 415583133 415584015 882 True 1232.00 1232 91.796 776 1671 1 chr4D.!!$R2 895
3 TraesCS4B01G247500 chr7B 16135778 16136552 774 False 950.00 950 89.144 795 1557 1 chr7B.!!$F2 762
4 TraesCS4B01G247500 chr7B 13329014 13329716 702 True 843.00 843 88.717 935 1623 1 chr7B.!!$R1 688
5 TraesCS4B01G247500 chr7B 14980497 14981205 708 False 806.00 806 87.483 790 1492 1 chr7B.!!$F1 702
6 TraesCS4B01G247500 chr7A 76953540 76954422 882 True 852.00 852 84.725 795 1667 1 chr7A.!!$R1 872
7 TraesCS4B01G247500 chr7D 70904746 70905451 705 True 771.00 771 87.079 944 1623 1 chr7D.!!$R1 679
8 TraesCS4B01G247500 chrUn 84317378 84318075 697 True 763.00 763 86.883 807 1493 1 chrUn.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 211 0.097325 GAAACCACACAAACGCACGA 59.903 50.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 2265 0.178975 ACAACTGAATCCGGGGCAAA 60.179 50.0 0.0 0.0 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.530151 AGGGTTCAGCTGAGGGCA 60.530 61.111 17.43 0.00 44.79 5.36
18 19 2.360475 GGGTTCAGCTGAGGGCAC 60.360 66.667 17.43 12.01 44.79 5.01
19 20 2.431683 GGTTCAGCTGAGGGCACA 59.568 61.111 17.43 0.00 44.79 4.57
20 21 1.673665 GGTTCAGCTGAGGGCACAG 60.674 63.158 17.43 6.57 44.79 3.66
26 27 3.978272 CTGAGGGCACAGCTCAAC 58.022 61.111 0.00 0.00 0.00 3.18
27 28 1.071987 CTGAGGGCACAGCTCAACA 59.928 57.895 0.00 0.00 0.00 3.33
28 29 0.535780 CTGAGGGCACAGCTCAACAA 60.536 55.000 0.00 0.00 0.00 2.83
29 30 0.535780 TGAGGGCACAGCTCAACAAG 60.536 55.000 0.00 0.00 0.00 3.16
43 44 4.809673 CTCAACAAGCCCTAAAATTGACC 58.190 43.478 0.00 0.00 0.00 4.02
48 49 5.793817 ACAAGCCCTAAAATTGACCAATTC 58.206 37.500 8.26 0.00 39.88 2.17
51 52 7.180051 ACAAGCCCTAAAATTGACCAATTCATA 59.820 33.333 8.26 5.12 39.88 2.15
54 55 8.260114 AGCCCTAAAATTGACCAATTCATAAAG 58.740 33.333 8.26 3.28 39.88 1.85
62 63 9.492973 AATTGACCAATTCATAAAGAAAACTGG 57.507 29.630 2.38 0.00 40.22 4.00
63 64 7.831691 TGACCAATTCATAAAGAAAACTGGA 57.168 32.000 9.53 0.00 40.22 3.86
64 65 8.421249 TGACCAATTCATAAAGAAAACTGGAT 57.579 30.769 9.53 0.00 40.22 3.41
65 66 8.306038 TGACCAATTCATAAAGAAAACTGGATG 58.694 33.333 9.53 0.00 40.22 3.51
73 75 4.584327 AAGAAAACTGGATGAAAACCGG 57.416 40.909 0.00 0.00 41.69 5.28
89 91 1.141254 ACCGGTACATTTCCACACACA 59.859 47.619 4.49 0.00 0.00 3.72
95 97 2.451490 ACATTTCCACACACACCAACA 58.549 42.857 0.00 0.00 0.00 3.33
99 101 0.533978 TCCACACACACCAACATCGG 60.534 55.000 0.00 0.00 0.00 4.18
100 102 0.817634 CCACACACACCAACATCGGT 60.818 55.000 0.00 0.00 41.07 4.69
101 103 1.021202 CACACACACCAACATCGGTT 58.979 50.000 0.00 0.00 37.07 4.44
105 107 2.478894 CACACACCAACATCGGTTCTAC 59.521 50.000 0.00 0.00 37.07 2.59
108 110 1.990563 CACCAACATCGGTTCTACGAC 59.009 52.381 0.00 0.00 46.64 4.34
128 130 2.290641 ACACAAATGAGCCAACGACTTC 59.709 45.455 0.00 0.00 0.00 3.01
129 131 2.290367 CACAAATGAGCCAACGACTTCA 59.710 45.455 0.00 0.00 0.00 3.02
138 140 2.432444 CCAACGACTTCATAGCCCAAA 58.568 47.619 0.00 0.00 0.00 3.28
169 171 1.053424 AACACCATACCACACGACCT 58.947 50.000 0.00 0.00 0.00 3.85
173 175 0.175760 CCATACCACACGACCTGGAG 59.824 60.000 0.00 0.00 32.55 3.86
191 193 3.838271 CCGCCGCTCTGCCTTAGA 61.838 66.667 0.00 0.00 0.00 2.10
209 211 0.097325 GAAACCACACAAACGCACGA 59.903 50.000 0.00 0.00 0.00 4.35
212 214 1.299562 ACCACACAAACGCACGAACA 61.300 50.000 0.00 0.00 0.00 3.18
213 215 0.859788 CCACACAAACGCACGAACAC 60.860 55.000 0.00 0.00 0.00 3.32
215 217 1.649941 CACAAACGCACGAACACGG 60.650 57.895 0.00 0.00 0.00 4.94
221 223 4.382320 GCACGAACACGGCCCCTA 62.382 66.667 0.00 0.00 0.00 3.53
223 225 3.387947 ACGAACACGGCCCCTAGG 61.388 66.667 0.06 0.06 0.00 3.02
237 262 0.621862 CCTAGGCTCTTCCCCCAAGT 60.622 60.000 0.00 0.00 33.27 3.16
249 274 1.638589 CCCCCAAGTAACCCAAGATGA 59.361 52.381 0.00 0.00 0.00 2.92
256 281 5.949354 CCAAGTAACCCAAGATGAAACCATA 59.051 40.000 0.00 0.00 0.00 2.74
257 282 6.607198 CCAAGTAACCCAAGATGAAACCATAT 59.393 38.462 0.00 0.00 0.00 1.78
268 293 7.213178 AGATGAAACCATATAGGGTGAACTT 57.787 36.000 10.37 0.00 41.32 2.66
292 317 4.514577 CGCCGCTCCGTCTTCCAT 62.515 66.667 0.00 0.00 0.00 3.41
294 319 1.591863 GCCGCTCCGTCTTCCATAC 60.592 63.158 0.00 0.00 0.00 2.39
296 321 1.299165 CGCTCCGTCTTCCATACCG 60.299 63.158 0.00 0.00 0.00 4.02
297 322 1.721664 CGCTCCGTCTTCCATACCGA 61.722 60.000 0.00 0.00 0.00 4.69
303 328 0.906775 GTCTTCCATACCGACCCCAA 59.093 55.000 0.00 0.00 0.00 4.12
314 339 1.380302 GACCCCAAGTCATGCACCT 59.620 57.895 0.00 0.00 45.55 4.00
315 340 0.962356 GACCCCAAGTCATGCACCTG 60.962 60.000 0.00 0.00 45.55 4.00
320 345 1.376543 CAAGTCATGCACCTGCCTAG 58.623 55.000 0.00 0.00 41.18 3.02
335 360 1.148157 CCTAGCCGACAACGATGCAG 61.148 60.000 0.00 0.00 42.66 4.41
338 363 1.016130 AGCCGACAACGATGCAGAAG 61.016 55.000 0.00 0.00 42.66 2.85
339 364 1.970917 GCCGACAACGATGCAGAAGG 61.971 60.000 0.00 0.00 42.66 3.46
350 377 1.059098 TGCAGAAGGACCTCATGTGT 58.941 50.000 0.00 0.00 0.00 3.72
364 391 5.128827 ACCTCATGTGTTAGTGTTATCCGAT 59.871 40.000 0.00 0.00 0.00 4.18
384 411 5.105554 CCGATAGAAGATGATACCTCCAAGG 60.106 48.000 0.00 0.00 39.38 3.61
393 420 4.148825 CCTCCAAGGCGACTCCCG 62.149 72.222 0.00 0.00 42.68 5.14
409 436 4.285851 CGCAAGGAGGAAGTGACC 57.714 61.111 0.00 0.00 0.00 4.02
415 442 0.969894 AGGAGGAAGTGACCAGAACG 59.030 55.000 0.00 0.00 0.00 3.95
419 446 1.282930 GGAAGTGACCAGAACGACGC 61.283 60.000 0.00 0.00 0.00 5.19
420 447 1.282930 GAAGTGACCAGAACGACGCC 61.283 60.000 0.00 0.00 0.00 5.68
438 465 4.803426 GACGCCCGCTCTGACCAG 62.803 72.222 0.00 0.00 0.00 4.00
485 513 5.407084 CAGCTTCATGATGCAATTTTGAACA 59.593 36.000 29.04 0.00 34.33 3.18
527 555 1.299541 AAGGCTCAAACGCATATCCG 58.700 50.000 0.00 0.00 0.00 4.18
550 578 5.008019 CGCATAACAAGGTAAGCAAGATGAT 59.992 40.000 0.00 0.00 0.00 2.45
593 621 8.145767 AGACCGTGGTAAAAATTATCGATCATA 58.854 33.333 0.00 0.00 0.00 2.15
609 637 6.285224 TCGATCATACAACGGTCCATTTAAT 58.715 36.000 0.00 0.00 0.00 1.40
613 641 9.825972 GATCATACAACGGTCCATTTAATATTG 57.174 33.333 0.00 0.00 0.00 1.90
615 643 9.179909 TCATACAACGGTCCATTTAATATTGTT 57.820 29.630 0.00 0.00 31.81 2.83
625 653 9.965824 GTCCATTTAATATTGTTACCATCCTTG 57.034 33.333 0.00 0.00 0.00 3.61
644 672 6.478129 TCCTTGTAACAAATTACTCCGGAAT 58.522 36.000 5.23 0.00 41.24 3.01
651 679 6.753107 ACAAATTACTCCGGAATTAGGTTG 57.247 37.500 5.23 8.60 0.00 3.77
688 716 9.695526 TTTTGATTTCAAATGACGATCAATTCT 57.304 25.926 16.09 0.00 44.30 2.40
689 717 9.695526 TTTGATTTCAAATGACGATCAATTCTT 57.304 25.926 16.09 0.00 40.55 2.52
690 718 8.900511 TGATTTCAAATGACGATCAATTCTTC 57.099 30.769 0.00 0.00 29.40 2.87
691 719 8.513774 TGATTTCAAATGACGATCAATTCTTCA 58.486 29.630 0.00 0.00 37.07 3.02
692 720 8.906636 ATTTCAAATGACGATCAATTCTTCAG 57.093 30.769 0.00 0.00 36.21 3.02
693 721 7.671495 TTCAAATGACGATCAATTCTTCAGA 57.329 32.000 0.00 0.00 36.21 3.27
694 722 7.671495 TCAAATGACGATCAATTCTTCAGAA 57.329 32.000 0.00 0.00 36.21 3.02
695 723 8.098220 TCAAATGACGATCAATTCTTCAGAAA 57.902 30.769 0.00 0.00 36.21 2.52
696 724 8.733458 TCAAATGACGATCAATTCTTCAGAAAT 58.267 29.630 0.00 0.00 36.21 2.17
697 725 9.350357 CAAATGACGATCAATTCTTCAGAAATT 57.650 29.630 0.00 0.00 36.21 1.82
698 726 9.918630 AAATGACGATCAATTCTTCAGAAATTT 57.081 25.926 0.00 0.00 36.21 1.82
699 727 9.565213 AATGACGATCAATTCTTCAGAAATTTC 57.435 29.630 10.33 10.33 36.21 2.17
700 728 7.530010 TGACGATCAATTCTTCAGAAATTTCC 58.470 34.615 14.61 0.00 37.61 3.13
701 729 6.856895 ACGATCAATTCTTCAGAAATTTCCC 58.143 36.000 14.61 0.00 37.61 3.97
702 730 6.434028 ACGATCAATTCTTCAGAAATTTCCCA 59.566 34.615 14.61 0.00 37.61 4.37
703 731 6.749118 CGATCAATTCTTCAGAAATTTCCCAC 59.251 38.462 14.61 0.00 37.61 4.61
704 732 6.975196 TCAATTCTTCAGAAATTTCCCACA 57.025 33.333 14.61 0.00 37.61 4.17
705 733 6.748132 TCAATTCTTCAGAAATTTCCCACAC 58.252 36.000 14.61 0.00 37.61 3.82
706 734 6.323482 TCAATTCTTCAGAAATTTCCCACACA 59.677 34.615 14.61 0.00 37.61 3.72
707 735 6.729690 ATTCTTCAGAAATTTCCCACACAA 57.270 33.333 14.61 2.12 37.61 3.33
708 736 6.537453 TTCTTCAGAAATTTCCCACACAAA 57.463 33.333 14.61 0.00 0.00 2.83
709 737 6.537453 TCTTCAGAAATTTCCCACACAAAA 57.463 33.333 14.61 0.00 0.00 2.44
710 738 6.940739 TCTTCAGAAATTTCCCACACAAAAA 58.059 32.000 14.61 0.00 0.00 1.94
733 761 8.496707 AAAAACAATTCTGCAGAAATTTCAGT 57.503 26.923 31.55 19.38 37.61 3.41
734 762 9.598517 AAAAACAATTCTGCAGAAATTTCAGTA 57.401 25.926 31.55 10.72 37.61 2.74
735 763 8.579682 AAACAATTCTGCAGAAATTTCAGTAC 57.420 30.769 31.55 6.85 37.61 2.73
736 764 7.275888 ACAATTCTGCAGAAATTTCAGTACA 57.724 32.000 31.55 5.99 37.61 2.90
737 765 7.715657 ACAATTCTGCAGAAATTTCAGTACAA 58.284 30.769 31.55 5.77 37.61 2.41
738 766 7.864379 ACAATTCTGCAGAAATTTCAGTACAAG 59.136 33.333 31.55 10.79 37.61 3.16
739 767 5.947228 TCTGCAGAAATTTCAGTACAAGG 57.053 39.130 15.67 0.85 0.00 3.61
740 768 4.216257 TCTGCAGAAATTTCAGTACAAGGC 59.784 41.667 15.67 10.01 0.00 4.35
741 769 4.144297 TGCAGAAATTTCAGTACAAGGCT 58.856 39.130 19.99 0.00 0.00 4.58
742 770 4.022935 TGCAGAAATTTCAGTACAAGGCTG 60.023 41.667 19.99 6.66 35.43 4.85
743 771 4.216257 GCAGAAATTTCAGTACAAGGCTGA 59.784 41.667 19.99 0.00 40.76 4.26
750 778 4.640771 TCAGTACAAGGCTGAAATTCCT 57.359 40.909 0.00 0.00 39.70 3.36
751 779 4.579869 TCAGTACAAGGCTGAAATTCCTC 58.420 43.478 0.00 0.00 39.70 3.71
752 780 3.691609 CAGTACAAGGCTGAAATTCCTCC 59.308 47.826 0.00 0.00 36.12 4.30
753 781 2.978156 ACAAGGCTGAAATTCCTCCA 57.022 45.000 0.00 0.00 0.00 3.86
754 782 2.800250 ACAAGGCTGAAATTCCTCCAG 58.200 47.619 0.00 0.00 0.00 3.86
755 783 2.376518 ACAAGGCTGAAATTCCTCCAGA 59.623 45.455 0.00 0.00 0.00 3.86
759 1019 2.637947 GCTGAAATTCCTCCAGACTCC 58.362 52.381 0.00 0.00 0.00 3.85
763 1023 4.425772 TGAAATTCCTCCAGACTCCAGTA 58.574 43.478 0.00 0.00 0.00 2.74
771 1031 1.107114 CAGACTCCAGTACCGCTCAT 58.893 55.000 0.00 0.00 0.00 2.90
772 1032 1.107114 AGACTCCAGTACCGCTCATG 58.893 55.000 0.00 0.00 0.00 3.07
773 1033 0.818296 GACTCCAGTACCGCTCATGT 59.182 55.000 0.00 0.00 0.00 3.21
774 1034 1.204941 GACTCCAGTACCGCTCATGTT 59.795 52.381 0.00 0.00 0.00 2.71
921 1190 2.483288 CCGGCGAAATCCAAACCG 59.517 61.111 9.30 0.00 43.44 4.44
952 1231 4.026226 CGCAAAGCACCAAAACCC 57.974 55.556 0.00 0.00 0.00 4.11
1048 1355 3.494336 CCGTAGCAGCAGCAGCAC 61.494 66.667 12.92 7.33 45.49 4.40
1056 1363 4.357279 GCAGCAGCACCCCTCCTT 62.357 66.667 0.00 0.00 41.58 3.36
1063 1371 4.760047 CACCCCTCCTTGCCGACG 62.760 72.222 0.00 0.00 0.00 5.12
1528 1840 3.121030 CGCGCTTGGTTGCTAGCT 61.121 61.111 17.23 0.00 35.25 3.32
1530 1842 2.328099 GCGCTTGGTTGCTAGCTGT 61.328 57.895 17.23 0.00 35.25 4.40
1623 1957 4.730600 TGATAAATGGAATCACGCATCG 57.269 40.909 0.00 0.00 0.00 3.84
1624 1958 3.058983 TGATAAATGGAATCACGCATCGC 60.059 43.478 0.00 0.00 0.00 4.58
1625 1959 1.382522 AAATGGAATCACGCATCGCT 58.617 45.000 0.00 0.00 0.00 4.93
1626 1960 1.382522 AATGGAATCACGCATCGCTT 58.617 45.000 0.00 0.00 0.00 4.68
1627 1961 0.940126 ATGGAATCACGCATCGCTTC 59.060 50.000 0.00 0.00 0.00 3.86
1650 1984 6.842163 TCTTTTATTCAAATTCTGTCTCGCC 58.158 36.000 0.00 0.00 0.00 5.54
1697 2087 1.825090 TTTGATTGCTGCGATCTGGT 58.175 45.000 25.81 0.00 0.00 4.00
1725 2115 0.036164 TGCGGGCTACAGTTTCATGT 59.964 50.000 0.00 0.00 37.19 3.21
1727 2117 1.135689 GCGGGCTACAGTTTCATGTTG 60.136 52.381 0.00 0.00 34.56 3.33
1739 2174 8.006298 ACAGTTTCATGTTGTCTTGGAAATTA 57.994 30.769 0.00 0.00 0.00 1.40
1750 2185 5.415701 TGTCTTGGAAATTAAGGCTGTGATC 59.584 40.000 0.00 0.00 31.27 2.92
1751 2186 5.649831 GTCTTGGAAATTAAGGCTGTGATCT 59.350 40.000 0.00 0.00 0.00 2.75
1752 2187 5.649395 TCTTGGAAATTAAGGCTGTGATCTG 59.351 40.000 0.00 0.00 0.00 2.90
1753 2188 4.272489 TGGAAATTAAGGCTGTGATCTGG 58.728 43.478 0.00 0.00 0.00 3.86
1754 2189 3.633986 GGAAATTAAGGCTGTGATCTGGG 59.366 47.826 0.00 0.00 0.00 4.45
1755 2190 4.526970 GAAATTAAGGCTGTGATCTGGGA 58.473 43.478 0.00 0.00 0.00 4.37
1756 2191 3.853355 ATTAAGGCTGTGATCTGGGAG 57.147 47.619 0.00 0.00 0.00 4.30
1757 2192 0.833287 TAAGGCTGTGATCTGGGAGC 59.167 55.000 0.00 0.00 0.00 4.70
1768 2203 4.040952 GTGATCTGGGAGCACATATAGGTT 59.959 45.833 10.44 0.00 46.52 3.50
1835 2270 9.857957 GTAATCCTGTATAGTACTCTATTTGCC 57.142 37.037 0.00 0.00 37.89 4.52
1836 2271 6.912951 TCCTGTATAGTACTCTATTTGCCC 57.087 41.667 0.00 0.00 37.89 5.36
1837 2272 5.778750 TCCTGTATAGTACTCTATTTGCCCC 59.221 44.000 0.00 0.00 37.89 5.80
1838 2273 5.336531 CCTGTATAGTACTCTATTTGCCCCG 60.337 48.000 0.00 0.00 37.89 5.73
1840 2275 2.170012 AGTACTCTATTTGCCCCGGA 57.830 50.000 0.73 0.00 0.00 5.14
1848 2300 1.185315 ATTTGCCCCGGATTCAGTTG 58.815 50.000 0.73 0.00 0.00 3.16
1851 2303 0.693622 TGCCCCGGATTCAGTTGTAA 59.306 50.000 0.73 0.00 0.00 2.41
1893 2346 5.305585 TGGTAGTTCCTTTTCAGCTAACAG 58.694 41.667 0.00 0.00 37.07 3.16
1918 2371 7.229306 AGTCAATTCTGAAACAGCTCATTTGTA 59.771 33.333 0.00 0.00 31.88 2.41
1920 2373 8.579006 TCAATTCTGAAACAGCTCATTTGTAAT 58.421 29.630 0.00 0.00 0.00 1.89
1934 2387 2.299993 TGTAATGAGAGGCTTGCTCG 57.700 50.000 0.00 0.00 35.15 5.03
1947 2400 2.874701 GCTTGCTCGTATGGAATGACAT 59.125 45.455 0.00 0.00 34.90 3.06
1950 2403 5.180117 GCTTGCTCGTATGGAATGACATATT 59.820 40.000 0.00 0.00 35.91 1.28
1952 2405 6.785488 TGCTCGTATGGAATGACATATTTC 57.215 37.500 0.00 0.00 35.91 2.17
1953 2406 5.405269 TGCTCGTATGGAATGACATATTTCG 59.595 40.000 0.00 0.00 35.91 3.46
1954 2407 5.163953 GCTCGTATGGAATGACATATTTCGG 60.164 44.000 0.00 0.00 35.91 4.30
1955 2408 4.688879 TCGTATGGAATGACATATTTCGGC 59.311 41.667 0.00 0.00 35.91 5.54
1956 2409 4.450757 CGTATGGAATGACATATTTCGGCA 59.549 41.667 0.00 0.00 35.91 5.69
1959 2412 4.206375 TGGAATGACATATTTCGGCACAT 58.794 39.130 0.00 0.00 0.00 3.21
1960 2413 4.644234 TGGAATGACATATTTCGGCACATT 59.356 37.500 0.00 0.00 0.00 2.71
1965 2418 4.940654 TGACATATTTCGGCACATTCTTGA 59.059 37.500 0.00 0.00 0.00 3.02
1966 2419 5.065090 TGACATATTTCGGCACATTCTTGAG 59.935 40.000 0.00 0.00 0.00 3.02
1967 2420 5.185454 ACATATTTCGGCACATTCTTGAGA 58.815 37.500 0.00 0.00 0.00 3.27
1968 2421 5.647658 ACATATTTCGGCACATTCTTGAGAA 59.352 36.000 0.00 0.00 38.56 2.87
1969 2422 4.691860 ATTTCGGCACATTCTTGAGAAG 57.308 40.909 0.00 0.00 37.48 2.85
1971 2424 3.953712 TCGGCACATTCTTGAGAAGTA 57.046 42.857 0.00 0.00 37.48 2.24
1972 2425 4.265904 TCGGCACATTCTTGAGAAGTAA 57.734 40.909 0.00 0.00 37.48 2.24
1978 3238 6.459573 GGCACATTCTTGAGAAGTAAACAACA 60.460 38.462 0.00 0.00 37.48 3.33
1981 3241 5.728351 TTCTTGAGAAGTAAACAACACCG 57.272 39.130 0.00 0.00 0.00 4.94
2001 3261 3.188460 CCGTTCAGGATTACAAACCACTG 59.812 47.826 0.00 0.00 45.00 3.66
2007 3269 3.070446 AGGATTACAAACCACTGTCACGA 59.930 43.478 0.00 0.00 0.00 4.35
2017 3279 0.952280 ACTGTCACGACGTCATGACT 59.048 50.000 35.67 20.37 44.59 3.41
2030 3292 1.066215 TCATGACTGACCACCCAATCG 60.066 52.381 0.00 0.00 0.00 3.34
2062 3324 7.159372 TCTTGAGAAGTAAACAACATCTACCC 58.841 38.462 0.00 0.00 36.31 3.69
2076 3345 6.814954 ACATCTACCCTATCACATGTTTCT 57.185 37.500 0.00 0.00 0.00 2.52
2087 3356 5.735285 TCACATGTTTCTCAGAGATCAGT 57.265 39.130 0.00 2.72 0.00 3.41
2088 3357 5.476614 TCACATGTTTCTCAGAGATCAGTG 58.523 41.667 0.00 12.55 0.00 3.66
2090 3359 6.070938 TCACATGTTTCTCAGAGATCAGTGAT 60.071 38.462 4.98 4.98 0.00 3.06
2092 3361 7.435784 CACATGTTTCTCAGAGATCAGTGATAG 59.564 40.741 5.38 0.00 0.00 2.08
2097 3366 7.894753 TTCTCAGAGATCAGTGATAGAACAT 57.105 36.000 5.38 0.00 0.00 2.71
2129 3398 9.617523 AATTCAGGAACAATTTTTGAAAGTCAT 57.382 25.926 0.00 0.00 32.21 3.06
2280 3551 9.744468 GAATCGGCTTACATTTTATAATTTGGT 57.256 29.630 0.00 0.00 0.00 3.67
2443 3733 9.421806 TCAACATTTATTGAATCATGAACAACC 57.578 29.630 16.91 0.14 35.65 3.77
2444 3734 8.374728 CAACATTTATTGAATCATGAACAACCG 58.625 33.333 16.91 9.14 0.00 4.44
2445 3735 7.825681 ACATTTATTGAATCATGAACAACCGA 58.174 30.769 16.91 8.95 0.00 4.69
2446 3736 8.303156 ACATTTATTGAATCATGAACAACCGAA 58.697 29.630 16.91 12.99 0.00 4.30
2447 3737 8.800972 CATTTATTGAATCATGAACAACCGAAG 58.199 33.333 16.91 7.53 0.00 3.79
2448 3738 7.680442 TTATTGAATCATGAACAACCGAAGA 57.320 32.000 16.91 0.00 0.00 2.87
2449 3739 6.573664 ATTGAATCATGAACAACCGAAGAA 57.426 33.333 16.91 0.00 0.00 2.52
2450 3740 5.356882 TGAATCATGAACAACCGAAGAAC 57.643 39.130 0.00 0.00 0.00 3.01
2451 3741 4.819088 TGAATCATGAACAACCGAAGAACA 59.181 37.500 0.00 0.00 0.00 3.18
2452 3742 5.473162 TGAATCATGAACAACCGAAGAACAT 59.527 36.000 0.00 0.00 0.00 2.71
2453 3743 5.551760 ATCATGAACAACCGAAGAACATC 57.448 39.130 0.00 0.00 0.00 3.06
2454 3744 4.384940 TCATGAACAACCGAAGAACATCA 58.615 39.130 0.00 0.00 0.00 3.07
2455 3745 5.003160 TCATGAACAACCGAAGAACATCAT 58.997 37.500 0.00 0.00 0.00 2.45
2456 3746 5.473162 TCATGAACAACCGAAGAACATCATT 59.527 36.000 0.00 0.00 0.00 2.57
2457 3747 5.356882 TGAACAACCGAAGAACATCATTC 57.643 39.130 0.00 0.00 0.00 2.67
2458 3748 4.819088 TGAACAACCGAAGAACATCATTCA 59.181 37.500 0.00 0.00 0.00 2.57
2459 3749 5.049474 TGAACAACCGAAGAACATCATTCAG 60.049 40.000 0.00 0.00 0.00 3.02
2460 3750 4.641396 ACAACCGAAGAACATCATTCAGA 58.359 39.130 0.00 0.00 0.00 3.27
2461 3751 5.248640 ACAACCGAAGAACATCATTCAGAT 58.751 37.500 0.00 0.00 37.48 2.90
2462 3752 5.707298 ACAACCGAAGAACATCATTCAGATT 59.293 36.000 0.00 0.00 33.72 2.40
2463 3753 6.207417 ACAACCGAAGAACATCATTCAGATTT 59.793 34.615 0.00 0.00 33.72 2.17
2464 3754 6.824305 ACCGAAGAACATCATTCAGATTTT 57.176 33.333 0.00 0.00 33.72 1.82
2465 3755 6.615088 ACCGAAGAACATCATTCAGATTTTG 58.385 36.000 0.00 0.00 33.72 2.44
2466 3756 6.032094 CCGAAGAACATCATTCAGATTTTGG 58.968 40.000 0.00 0.00 33.72 3.28
2467 3757 6.349611 CCGAAGAACATCATTCAGATTTTGGT 60.350 38.462 0.00 0.00 33.72 3.67
2468 3758 7.148255 CCGAAGAACATCATTCAGATTTTGGTA 60.148 37.037 0.00 0.00 33.72 3.25
2469 3759 8.236586 CGAAGAACATCATTCAGATTTTGGTAA 58.763 33.333 0.00 0.00 33.72 2.85
2470 3760 9.346725 GAAGAACATCATTCAGATTTTGGTAAC 57.653 33.333 0.00 0.00 33.72 2.50
2471 3761 8.408043 AGAACATCATTCAGATTTTGGTAACA 57.592 30.769 0.00 0.00 39.36 2.41
2472 3762 8.859090 AGAACATCATTCAGATTTTGGTAACAA 58.141 29.630 0.00 0.00 45.77 2.83
2540 3830 7.841915 AAAAATTCACGAACAGTTTTGGAAT 57.158 28.000 0.00 0.00 0.00 3.01
2541 3831 8.934507 AAAAATTCACGAACAGTTTTGGAATA 57.065 26.923 0.00 0.00 0.00 1.75
2542 3832 7.924103 AAATTCACGAACAGTTTTGGAATAC 57.076 32.000 0.00 0.00 0.00 1.89
2543 3833 6.627395 ATTCACGAACAGTTTTGGAATACA 57.373 33.333 0.00 0.00 0.00 2.29
2544 3834 6.627395 TTCACGAACAGTTTTGGAATACAT 57.373 33.333 0.00 0.00 0.00 2.29
2545 3835 5.996219 TCACGAACAGTTTTGGAATACATG 58.004 37.500 0.00 0.00 0.00 3.21
2546 3836 5.760743 TCACGAACAGTTTTGGAATACATGA 59.239 36.000 0.00 0.00 0.00 3.07
2547 3837 6.261158 TCACGAACAGTTTTGGAATACATGAA 59.739 34.615 0.00 0.00 0.00 2.57
2548 3838 6.915300 CACGAACAGTTTTGGAATACATGAAA 59.085 34.615 0.00 0.00 0.00 2.69
2549 3839 7.433719 CACGAACAGTTTTGGAATACATGAAAA 59.566 33.333 0.00 0.00 0.00 2.29
2550 3840 8.141268 ACGAACAGTTTTGGAATACATGAAAAT 58.859 29.630 0.00 0.00 0.00 1.82
2551 3841 8.977505 CGAACAGTTTTGGAATACATGAAAATT 58.022 29.630 0.00 0.00 0.00 1.82
2599 3889 9.793252 ATGAATTTATGAACAATCTACTTGCAC 57.207 29.630 0.00 0.00 38.50 4.57
2600 3890 9.013229 TGAATTTATGAACAATCTACTTGCACT 57.987 29.630 0.00 0.00 38.50 4.40
2688 3978 9.767228 ATTGTGAACATTTTCTGAATTCATGAA 57.233 25.926 11.26 11.26 32.30 2.57
2717 4007 7.972832 TTATGTAATCCTGAACACTTTTCGT 57.027 32.000 0.00 0.00 0.00 3.85
2718 4008 9.491675 TTTATGTAATCCTGAACACTTTTCGTA 57.508 29.630 0.00 0.00 0.00 3.43
2719 4009 9.661563 TTATGTAATCCTGAACACTTTTCGTAT 57.338 29.630 0.00 0.00 0.00 3.06
2720 4010 7.972832 TGTAATCCTGAACACTTTTCGTATT 57.027 32.000 0.00 0.00 0.00 1.89
2721 4011 8.025243 TGTAATCCTGAACACTTTTCGTATTC 57.975 34.615 0.00 0.00 29.67 1.75
2722 4012 7.658167 TGTAATCCTGAACACTTTTCGTATTCA 59.342 33.333 0.00 0.00 36.73 2.57
2723 4013 7.687941 AATCCTGAACACTTTTCGTATTCAT 57.312 32.000 0.00 0.00 38.29 2.57
2724 4014 6.480524 TCCTGAACACTTTTCGTATTCATG 57.519 37.500 0.00 0.00 38.29 3.07
2725 4015 6.227522 TCCTGAACACTTTTCGTATTCATGA 58.772 36.000 0.00 0.00 38.29 3.07
2726 4016 6.147164 TCCTGAACACTTTTCGTATTCATGAC 59.853 38.462 0.00 0.00 38.29 3.06
2727 4017 6.073276 CCTGAACACTTTTCGTATTCATGACA 60.073 38.462 0.00 0.00 38.29 3.58
2728 4018 7.252965 TGAACACTTTTCGTATTCATGACAA 57.747 32.000 0.00 0.00 34.29 3.18
2729 4019 7.870826 TGAACACTTTTCGTATTCATGACAAT 58.129 30.769 0.00 0.00 34.29 2.71
2730 4020 8.349245 TGAACACTTTTCGTATTCATGACAATT 58.651 29.630 0.00 0.00 34.29 2.32
2731 4021 8.506140 AACACTTTTCGTATTCATGACAATTG 57.494 30.769 3.24 3.24 0.00 2.32
2732 4022 7.870826 ACACTTTTCGTATTCATGACAATTGA 58.129 30.769 13.59 0.00 0.00 2.57
2733 4023 8.514594 ACACTTTTCGTATTCATGACAATTGAT 58.485 29.630 13.59 0.00 0.00 2.57
2734 4024 8.791605 CACTTTTCGTATTCATGACAATTGATG 58.208 33.333 13.59 6.62 0.00 3.07
2735 4025 8.729756 ACTTTTCGTATTCATGACAATTGATGA 58.270 29.630 13.59 9.05 0.00 2.92
2736 4026 9.558648 CTTTTCGTATTCATGACAATTGATGAA 57.441 29.630 19.27 19.27 41.58 2.57
2737 4027 8.894409 TTTCGTATTCATGACAATTGATGAAC 57.106 30.769 19.33 11.15 40.49 3.18
2738 4028 7.608308 TCGTATTCATGACAATTGATGAACA 57.392 32.000 19.33 9.74 40.49 3.18
2739 4029 8.038492 TCGTATTCATGACAATTGATGAACAA 57.962 30.769 19.33 11.32 40.49 2.83
2741 4031 9.934190 CGTATTCATGACAATTGATGAACAATA 57.066 29.630 19.33 9.66 46.90 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.530151 TGCCCTCAGCTGAACCCT 60.530 61.111 18.85 0.00 44.23 4.34
1 2 2.360475 GTGCCCTCAGCTGAACCC 60.360 66.667 18.85 8.88 44.23 4.11
2 3 1.673665 CTGTGCCCTCAGCTGAACC 60.674 63.158 18.85 9.24 44.23 3.62
3 4 3.978272 CTGTGCCCTCAGCTGAAC 58.022 61.111 18.85 13.37 44.23 3.18
9 10 0.535780 TTGTTGAGCTGTGCCCTCAG 60.536 55.000 0.00 0.00 40.16 3.35
10 11 0.535780 CTTGTTGAGCTGTGCCCTCA 60.536 55.000 0.00 0.00 37.54 3.86
11 12 2.251600 CTTGTTGAGCTGTGCCCTC 58.748 57.895 0.00 0.00 0.00 4.30
12 13 4.488790 CTTGTTGAGCTGTGCCCT 57.511 55.556 0.00 0.00 0.00 5.19
21 22 4.280677 TGGTCAATTTTAGGGCTTGTTGAG 59.719 41.667 0.00 0.00 0.00 3.02
22 23 4.219115 TGGTCAATTTTAGGGCTTGTTGA 58.781 39.130 0.00 0.00 0.00 3.18
23 24 4.599047 TGGTCAATTTTAGGGCTTGTTG 57.401 40.909 0.00 0.00 0.00 3.33
24 25 5.823861 ATTGGTCAATTTTAGGGCTTGTT 57.176 34.783 0.00 0.00 0.00 2.83
25 26 5.306678 TGAATTGGTCAATTTTAGGGCTTGT 59.693 36.000 9.88 0.00 40.77 3.16
26 27 5.792741 TGAATTGGTCAATTTTAGGGCTTG 58.207 37.500 9.88 0.00 40.77 4.01
27 28 6.625532 ATGAATTGGTCAATTTTAGGGCTT 57.374 33.333 9.88 0.00 40.77 4.35
28 29 7.732222 TTATGAATTGGTCAATTTTAGGGCT 57.268 32.000 9.88 0.00 40.77 5.19
29 30 8.257306 TCTTTATGAATTGGTCAATTTTAGGGC 58.743 33.333 9.88 0.00 40.77 5.19
48 49 6.586082 CCGGTTTTCATCCAGTTTTCTTTATG 59.414 38.462 0.00 0.00 0.00 1.90
51 52 4.404394 ACCGGTTTTCATCCAGTTTTCTTT 59.596 37.500 0.00 0.00 0.00 2.52
54 55 4.276431 TGTACCGGTTTTCATCCAGTTTTC 59.724 41.667 15.04 0.00 0.00 2.29
57 58 3.495434 TGTACCGGTTTTCATCCAGTT 57.505 42.857 15.04 0.00 0.00 3.16
59 60 4.142469 GGAAATGTACCGGTTTTCATCCAG 60.142 45.833 24.49 0.00 32.30 3.86
60 61 3.759618 GGAAATGTACCGGTTTTCATCCA 59.240 43.478 24.49 8.41 32.30 3.41
61 62 3.759618 TGGAAATGTACCGGTTTTCATCC 59.240 43.478 24.49 20.77 32.30 3.51
62 63 4.216687 TGTGGAAATGTACCGGTTTTCATC 59.783 41.667 24.49 18.12 32.30 2.92
63 64 4.022676 GTGTGGAAATGTACCGGTTTTCAT 60.023 41.667 24.49 18.40 32.30 2.57
64 65 3.315749 GTGTGGAAATGTACCGGTTTTCA 59.684 43.478 24.49 17.23 32.30 2.69
65 66 3.315749 TGTGTGGAAATGTACCGGTTTTC 59.684 43.478 15.04 17.05 0.00 2.29
73 75 3.378742 TGTTGGTGTGTGTGGAAATGTAC 59.621 43.478 0.00 0.00 0.00 2.90
79 81 1.304254 CGATGTTGGTGTGTGTGGAA 58.696 50.000 0.00 0.00 0.00 3.53
89 91 1.614903 TGTCGTAGAACCGATGTTGGT 59.385 47.619 0.00 0.00 46.67 3.67
95 97 4.174009 CTCATTTGTGTCGTAGAACCGAT 58.826 43.478 0.00 0.00 39.69 4.18
99 101 3.064207 TGGCTCATTTGTGTCGTAGAAC 58.936 45.455 0.00 0.00 39.69 3.01
100 102 3.394674 TGGCTCATTTGTGTCGTAGAA 57.605 42.857 0.00 0.00 39.69 2.10
101 103 3.064207 GTTGGCTCATTTGTGTCGTAGA 58.936 45.455 0.00 0.00 0.00 2.59
105 107 0.865111 TCGTTGGCTCATTTGTGTCG 59.135 50.000 0.00 0.00 0.00 4.35
107 109 1.967319 AGTCGTTGGCTCATTTGTGT 58.033 45.000 0.00 0.00 0.00 3.72
108 110 2.290367 TGAAGTCGTTGGCTCATTTGTG 59.710 45.455 0.00 0.00 0.00 3.33
138 140 5.410439 GTGGTATGGTGTTATCTCACGTTTT 59.590 40.000 0.00 0.00 39.00 2.43
149 151 2.028839 CAGGTCGTGTGGTATGGTGTTA 60.029 50.000 0.00 0.00 0.00 2.41
156 158 1.614241 GGCTCCAGGTCGTGTGGTAT 61.614 60.000 0.00 0.00 36.37 2.73
177 179 0.036388 TGGTTTCTAAGGCAGAGCGG 60.036 55.000 0.00 0.00 33.83 5.52
184 186 2.857104 GCGTTTGTGTGGTTTCTAAGGC 60.857 50.000 0.00 0.00 0.00 4.35
185 187 2.356382 TGCGTTTGTGTGGTTTCTAAGG 59.644 45.455 0.00 0.00 0.00 2.69
186 188 3.359654 GTGCGTTTGTGTGGTTTCTAAG 58.640 45.455 0.00 0.00 0.00 2.18
187 189 2.223066 CGTGCGTTTGTGTGGTTTCTAA 60.223 45.455 0.00 0.00 0.00 2.10
188 190 1.328069 CGTGCGTTTGTGTGGTTTCTA 59.672 47.619 0.00 0.00 0.00 2.10
189 191 0.098025 CGTGCGTTTGTGTGGTTTCT 59.902 50.000 0.00 0.00 0.00 2.52
190 192 0.097325 TCGTGCGTTTGTGTGGTTTC 59.903 50.000 0.00 0.00 0.00 2.78
191 193 0.522180 TTCGTGCGTTTGTGTGGTTT 59.478 45.000 0.00 0.00 0.00 3.27
219 221 2.170817 GTTACTTGGGGGAAGAGCCTAG 59.829 54.545 0.00 0.00 35.42 3.02
220 222 2.193993 GTTACTTGGGGGAAGAGCCTA 58.806 52.381 0.00 0.00 35.42 3.93
221 223 0.992695 GTTACTTGGGGGAAGAGCCT 59.007 55.000 0.00 0.00 35.42 4.58
223 225 0.034380 GGGTTACTTGGGGGAAGAGC 60.034 60.000 0.00 0.00 35.42 4.09
228 253 1.638589 CATCTTGGGTTACTTGGGGGA 59.361 52.381 0.00 0.00 0.00 4.81
237 262 6.391649 ACCCTATATGGTTTCATCTTGGGTTA 59.608 38.462 9.71 0.00 45.84 2.85
249 274 4.472108 TCCGAAGTTCACCCTATATGGTTT 59.528 41.667 3.32 0.00 36.12 3.27
256 281 0.831307 GGCTCCGAAGTTCACCCTAT 59.169 55.000 3.32 0.00 0.00 2.57
257 282 1.601419 CGGCTCCGAAGTTCACCCTA 61.601 60.000 1.35 0.00 42.83 3.53
296 321 0.962356 CAGGTGCATGACTTGGGGTC 60.962 60.000 0.00 0.00 44.70 4.46
297 322 1.075482 CAGGTGCATGACTTGGGGT 59.925 57.895 0.00 0.00 0.00 4.95
303 328 1.222936 GCTAGGCAGGTGCATGACT 59.777 57.895 0.47 0.47 42.69 3.41
314 339 1.153647 CATCGTTGTCGGCTAGGCA 60.154 57.895 17.45 0.55 37.69 4.75
315 340 2.526120 GCATCGTTGTCGGCTAGGC 61.526 63.158 6.15 6.15 37.69 3.93
320 345 1.421485 CTTCTGCATCGTTGTCGGC 59.579 57.895 0.00 0.00 37.69 5.54
335 360 4.273148 ACACTAACACATGAGGTCCTTC 57.727 45.455 0.00 0.00 0.00 3.46
338 363 5.116882 GGATAACACTAACACATGAGGTCC 58.883 45.833 0.00 0.00 0.00 4.46
339 364 4.804139 CGGATAACACTAACACATGAGGTC 59.196 45.833 0.00 0.00 0.00 3.85
364 391 3.574396 CGCCTTGGAGGTATCATCTTCTA 59.426 47.826 0.00 0.00 37.80 2.10
393 420 0.687354 TCTGGTCACTTCCTCCTTGC 59.313 55.000 0.00 0.00 0.00 4.01
401 428 1.282930 GGCGTCGTTCTGGTCACTTC 61.283 60.000 0.00 0.00 0.00 3.01
403 430 2.338984 GGCGTCGTTCTGGTCACT 59.661 61.111 0.00 0.00 0.00 3.41
405 432 3.289062 TCGGCGTCGTTCTGGTCA 61.289 61.111 10.18 0.00 37.69 4.02
438 465 3.455152 AAAAACAAGCTCCGGCCC 58.545 55.556 0.00 0.00 39.73 5.80
505 533 3.427503 CGGATATGCGTTTGAGCCTTTTT 60.428 43.478 8.66 0.00 36.02 1.94
516 544 2.548057 CCTTGTTATGCGGATATGCGTT 59.452 45.455 18.21 8.73 37.81 4.84
519 547 4.378459 GCTTACCTTGTTATGCGGATATGC 60.378 45.833 0.00 0.00 0.00 3.14
527 555 5.818136 TCATCTTGCTTACCTTGTTATGC 57.182 39.130 0.00 0.00 0.00 3.14
550 578 3.531538 GGTCTAATTCACATCTTCGGCA 58.468 45.455 0.00 0.00 0.00 5.69
553 581 3.551890 CCACGGTCTAATTCACATCTTCG 59.448 47.826 0.00 0.00 0.00 3.79
555 583 4.553330 ACCACGGTCTAATTCACATCTT 57.447 40.909 0.00 0.00 0.00 2.40
593 621 7.764331 GGTAACAATATTAAATGGACCGTTGT 58.236 34.615 0.00 0.00 0.00 3.32
613 641 8.456471 GGAGTAATTTGTTACAAGGATGGTAAC 58.544 37.037 8.15 8.15 35.01 2.50
615 643 6.819649 CGGAGTAATTTGTTACAAGGATGGTA 59.180 38.462 0.00 0.00 0.00 3.25
617 645 5.065988 CCGGAGTAATTTGTTACAAGGATGG 59.934 44.000 0.00 0.00 0.00 3.51
625 653 7.854557 ACCTAATTCCGGAGTAATTTGTTAC 57.145 36.000 3.34 0.00 26.94 2.50
664 692 9.345517 GAAGAATTGATCGTCATTTGAAATCAA 57.654 29.630 16.02 16.02 40.06 2.57
665 693 8.513774 TGAAGAATTGATCGTCATTTGAAATCA 58.486 29.630 0.00 3.85 40.89 2.57
666 694 8.900511 TGAAGAATTGATCGTCATTTGAAATC 57.099 30.769 0.00 0.00 40.89 2.17
667 695 8.733458 TCTGAAGAATTGATCGTCATTTGAAAT 58.267 29.630 0.00 0.00 44.01 2.17
668 696 8.098220 TCTGAAGAATTGATCGTCATTTGAAA 57.902 30.769 0.00 0.00 44.01 2.69
669 697 7.671495 TCTGAAGAATTGATCGTCATTTGAA 57.329 32.000 0.00 0.00 44.01 2.69
670 698 7.671495 TTCTGAAGAATTGATCGTCATTTGA 57.329 32.000 0.00 0.00 44.01 2.69
671 699 8.906636 ATTTCTGAAGAATTGATCGTCATTTG 57.093 30.769 0.00 0.00 44.01 2.32
672 700 9.918630 AAATTTCTGAAGAATTGATCGTCATTT 57.081 25.926 0.00 0.00 44.01 2.32
673 701 9.565213 GAAATTTCTGAAGAATTGATCGTCATT 57.435 29.630 11.05 0.00 44.01 2.57
674 702 8.186821 GGAAATTTCTGAAGAATTGATCGTCAT 58.813 33.333 17.42 0.00 44.01 3.06
675 703 7.362056 GGGAAATTTCTGAAGAATTGATCGTCA 60.362 37.037 17.42 0.00 43.07 4.35
676 704 6.969473 GGGAAATTTCTGAAGAATTGATCGTC 59.031 38.462 17.42 0.00 37.11 4.20
677 705 6.434028 TGGGAAATTTCTGAAGAATTGATCGT 59.566 34.615 17.42 0.00 33.54 3.73
678 706 6.749118 GTGGGAAATTTCTGAAGAATTGATCG 59.251 38.462 17.42 0.00 33.54 3.69
679 707 7.543520 GTGTGGGAAATTTCTGAAGAATTGATC 59.456 37.037 17.42 0.00 33.54 2.92
680 708 7.015487 TGTGTGGGAAATTTCTGAAGAATTGAT 59.985 33.333 17.42 0.00 33.54 2.57
681 709 6.323482 TGTGTGGGAAATTTCTGAAGAATTGA 59.677 34.615 17.42 0.00 33.54 2.57
682 710 6.514947 TGTGTGGGAAATTTCTGAAGAATTG 58.485 36.000 17.42 0.00 33.54 2.32
683 711 6.729690 TGTGTGGGAAATTTCTGAAGAATT 57.270 33.333 17.42 0.00 33.54 2.17
684 712 6.729690 TTGTGTGGGAAATTTCTGAAGAAT 57.270 33.333 17.42 0.00 33.54 2.40
685 713 6.537453 TTTGTGTGGGAAATTTCTGAAGAA 57.463 33.333 17.42 4.21 0.00 2.52
686 714 6.537453 TTTTGTGTGGGAAATTTCTGAAGA 57.463 33.333 17.42 0.36 0.00 2.87
708 736 8.496707 ACTGAAATTTCTGCAGAATTGTTTTT 57.503 26.923 28.89 20.73 33.54 1.94
709 737 9.034544 GTACTGAAATTTCTGCAGAATTGTTTT 57.965 29.630 28.89 22.82 33.54 2.43
710 738 8.196771 TGTACTGAAATTTCTGCAGAATTGTTT 58.803 29.630 28.89 25.67 33.54 2.83
711 739 7.715657 TGTACTGAAATTTCTGCAGAATTGTT 58.284 30.769 28.89 21.31 33.54 2.83
712 740 7.275888 TGTACTGAAATTTCTGCAGAATTGT 57.724 32.000 28.89 20.42 33.54 2.71
713 741 7.327761 CCTTGTACTGAAATTTCTGCAGAATTG 59.672 37.037 28.89 15.36 33.54 2.32
714 742 7.373493 CCTTGTACTGAAATTTCTGCAGAATT 58.627 34.615 28.89 22.20 33.54 2.17
715 743 6.571150 GCCTTGTACTGAAATTTCTGCAGAAT 60.571 38.462 28.89 15.24 33.54 2.40
716 744 5.278463 GCCTTGTACTGAAATTTCTGCAGAA 60.278 40.000 25.16 25.16 33.94 3.02
717 745 4.216257 GCCTTGTACTGAAATTTCTGCAGA 59.784 41.667 21.11 13.74 33.94 4.26
718 746 4.217118 AGCCTTGTACTGAAATTTCTGCAG 59.783 41.667 21.11 7.63 35.81 4.41
719 747 4.022935 CAGCCTTGTACTGAAATTTCTGCA 60.023 41.667 21.11 9.07 37.32 4.41
720 748 4.216257 TCAGCCTTGTACTGAAATTTCTGC 59.784 41.667 21.11 9.51 41.10 4.26
721 749 5.947228 TCAGCCTTGTACTGAAATTTCTG 57.053 39.130 19.97 19.97 41.10 3.02
729 757 4.565652 GGAGGAATTTCAGCCTTGTACTGA 60.566 45.833 0.00 0.00 42.30 3.41
730 758 3.691609 GGAGGAATTTCAGCCTTGTACTG 59.308 47.826 0.00 0.00 33.84 2.74
731 759 3.330701 TGGAGGAATTTCAGCCTTGTACT 59.669 43.478 0.00 0.00 33.84 2.73
732 760 3.686016 TGGAGGAATTTCAGCCTTGTAC 58.314 45.455 0.00 0.00 33.84 2.90
733 761 3.587061 TCTGGAGGAATTTCAGCCTTGTA 59.413 43.478 0.00 0.00 33.84 2.41
734 762 2.376518 TCTGGAGGAATTTCAGCCTTGT 59.623 45.455 0.00 0.00 33.84 3.16
735 763 2.751806 GTCTGGAGGAATTTCAGCCTTG 59.248 50.000 0.00 0.00 33.84 3.61
736 764 2.646798 AGTCTGGAGGAATTTCAGCCTT 59.353 45.455 0.00 0.00 33.84 4.35
737 765 2.238395 GAGTCTGGAGGAATTTCAGCCT 59.762 50.000 0.00 0.00 37.18 4.58
738 766 2.637947 GAGTCTGGAGGAATTTCAGCC 58.362 52.381 0.00 0.00 0.00 4.85
739 767 2.026822 TGGAGTCTGGAGGAATTTCAGC 60.027 50.000 0.00 0.00 0.00 4.26
740 768 3.262915 ACTGGAGTCTGGAGGAATTTCAG 59.737 47.826 0.00 0.00 33.40 3.02
741 769 3.251484 ACTGGAGTCTGGAGGAATTTCA 58.749 45.455 0.00 0.00 0.00 2.69
742 770 3.990959 ACTGGAGTCTGGAGGAATTTC 57.009 47.619 0.00 0.00 0.00 2.17
743 771 3.519913 GGTACTGGAGTCTGGAGGAATTT 59.480 47.826 0.00 0.00 0.00 1.82
744 772 3.108376 GGTACTGGAGTCTGGAGGAATT 58.892 50.000 0.00 0.00 0.00 2.17
745 773 2.753247 GGTACTGGAGTCTGGAGGAAT 58.247 52.381 0.00 0.00 0.00 3.01
746 774 1.616187 CGGTACTGGAGTCTGGAGGAA 60.616 57.143 0.00 0.00 0.00 3.36
747 775 0.034380 CGGTACTGGAGTCTGGAGGA 60.034 60.000 0.00 0.00 0.00 3.71
748 776 1.668101 GCGGTACTGGAGTCTGGAGG 61.668 65.000 3.34 0.00 0.00 4.30
749 777 0.681564 AGCGGTACTGGAGTCTGGAG 60.682 60.000 3.34 0.00 0.00 3.86
750 778 0.680280 GAGCGGTACTGGAGTCTGGA 60.680 60.000 3.34 0.00 0.00 3.86
751 779 0.965866 TGAGCGGTACTGGAGTCTGG 60.966 60.000 3.34 0.00 0.00 3.86
752 780 1.107114 ATGAGCGGTACTGGAGTCTG 58.893 55.000 3.34 0.00 0.00 3.51
753 781 1.107114 CATGAGCGGTACTGGAGTCT 58.893 55.000 3.34 0.00 0.00 3.24
754 782 0.818296 ACATGAGCGGTACTGGAGTC 59.182 55.000 0.00 0.00 0.00 3.36
755 783 1.066858 CAACATGAGCGGTACTGGAGT 60.067 52.381 0.00 0.00 0.00 3.85
759 1019 1.337728 TGGACAACATGAGCGGTACTG 60.338 52.381 0.00 0.00 0.00 2.74
763 1023 0.603707 CTGTGGACAACATGAGCGGT 60.604 55.000 0.00 0.00 38.39 5.68
772 1032 0.463654 TGCTGTGGTCTGTGGACAAC 60.464 55.000 0.00 0.00 44.47 3.32
773 1033 0.179048 CTGCTGTGGTCTGTGGACAA 60.179 55.000 0.00 0.00 43.77 3.18
774 1034 1.447217 CTGCTGTGGTCTGTGGACA 59.553 57.895 0.00 0.00 43.77 4.02
921 1190 1.672789 TTTGCGCGCGATGATTTTGC 61.673 50.000 37.18 13.07 0.00 3.68
952 1231 5.132816 GGGGGTATAAATAGGATCTGGGATG 59.867 48.000 0.00 0.00 0.00 3.51
1048 1355 4.452733 GTCGTCGGCAAGGAGGGG 62.453 72.222 0.00 0.00 0.00 4.79
1125 1435 4.400961 GCCAGCTGCTTCCTCGGT 62.401 66.667 8.66 0.00 36.87 4.69
1300 1610 1.670380 GGTCTTGAAGTCCTGAGCGAC 60.670 57.143 1.09 0.00 0.00 5.19
1305 1615 0.966920 GGTCGGTCTTGAAGTCCTGA 59.033 55.000 6.89 3.54 0.00 3.86
1511 1823 3.121030 AGCTAGCAACCAAGCGCG 61.121 61.111 18.83 0.00 43.63 6.86
1528 1840 7.414436 GCAAACAACTACAGAGTCATAAAACA 58.586 34.615 0.00 0.00 33.58 2.83
1530 1842 6.016610 GGGCAAACAACTACAGAGTCATAAAA 60.017 38.462 0.00 0.00 33.58 1.52
1623 1957 7.007815 GCGAGACAGAATTTGAATAAAAGAAGC 59.992 37.037 0.00 0.00 0.00 3.86
1624 1958 7.483059 GGCGAGACAGAATTTGAATAAAAGAAG 59.517 37.037 0.00 0.00 0.00 2.85
1625 1959 7.305474 GGCGAGACAGAATTTGAATAAAAGAA 58.695 34.615 0.00 0.00 0.00 2.52
1626 1960 6.402118 CGGCGAGACAGAATTTGAATAAAAGA 60.402 38.462 0.00 0.00 0.00 2.52
1627 1961 5.734498 CGGCGAGACAGAATTTGAATAAAAG 59.266 40.000 0.00 0.00 0.00 2.27
1668 2002 3.488310 CGCAGCAATCAAAATCCAATAGC 59.512 43.478 0.00 0.00 0.00 2.97
1669 2003 4.923893 TCGCAGCAATCAAAATCCAATAG 58.076 39.130 0.00 0.00 0.00 1.73
1670 2004 4.979943 TCGCAGCAATCAAAATCCAATA 57.020 36.364 0.00 0.00 0.00 1.90
1671 2005 3.872511 TCGCAGCAATCAAAATCCAAT 57.127 38.095 0.00 0.00 0.00 3.16
1672 2006 3.444742 AGATCGCAGCAATCAAAATCCAA 59.555 39.130 0.00 0.00 0.00 3.53
1673 2007 3.018856 AGATCGCAGCAATCAAAATCCA 58.981 40.909 0.00 0.00 0.00 3.41
1674 2008 3.369385 CAGATCGCAGCAATCAAAATCC 58.631 45.455 0.00 0.00 0.00 3.01
1675 2009 3.181493 ACCAGATCGCAGCAATCAAAATC 60.181 43.478 0.00 0.00 0.00 2.17
1676 2010 2.756760 ACCAGATCGCAGCAATCAAAAT 59.243 40.909 0.00 0.00 0.00 1.82
1677 2011 2.161855 ACCAGATCGCAGCAATCAAAA 58.838 42.857 0.00 0.00 0.00 2.44
1679 2013 2.093500 ACTACCAGATCGCAGCAATCAA 60.093 45.455 0.00 0.00 0.00 2.57
1681 2015 1.863454 CACTACCAGATCGCAGCAATC 59.137 52.381 0.00 0.00 0.00 2.67
1682 2016 1.945387 CACTACCAGATCGCAGCAAT 58.055 50.000 0.00 0.00 0.00 3.56
1684 2018 1.153568 GCACTACCAGATCGCAGCA 60.154 57.895 0.00 0.00 0.00 4.41
1685 2019 0.531532 ATGCACTACCAGATCGCAGC 60.532 55.000 0.00 0.00 35.79 5.25
1686 2020 1.068281 AGATGCACTACCAGATCGCAG 59.932 52.381 0.00 0.00 35.79 5.18
1697 2087 1.326951 TGTAGCCCGCAGATGCACTA 61.327 55.000 5.55 0.84 42.21 2.74
1725 2115 5.136828 TCACAGCCTTAATTTCCAAGACAA 58.863 37.500 0.00 0.00 0.00 3.18
1727 2117 5.649831 AGATCACAGCCTTAATTTCCAAGAC 59.350 40.000 0.00 0.00 0.00 3.01
1739 2174 1.203441 TGCTCCCAGATCACAGCCTT 61.203 55.000 0.00 0.00 0.00 4.35
1750 2185 5.070446 TCACTTAACCTATATGTGCTCCCAG 59.930 44.000 0.00 0.00 0.00 4.45
1751 2186 4.966168 TCACTTAACCTATATGTGCTCCCA 59.034 41.667 0.00 0.00 0.00 4.37
1752 2187 5.546621 TCACTTAACCTATATGTGCTCCC 57.453 43.478 0.00 0.00 0.00 4.30
1753 2188 7.859325 TTTTCACTTAACCTATATGTGCTCC 57.141 36.000 0.00 0.00 0.00 4.70
1754 2189 7.857885 GCATTTTCACTTAACCTATATGTGCTC 59.142 37.037 0.00 0.00 0.00 4.26
1755 2190 7.339212 TGCATTTTCACTTAACCTATATGTGCT 59.661 33.333 0.00 0.00 0.00 4.40
1756 2191 7.479980 TGCATTTTCACTTAACCTATATGTGC 58.520 34.615 0.00 0.00 0.00 4.57
1757 2192 8.892723 TCTGCATTTTCACTTAACCTATATGTG 58.107 33.333 0.00 0.00 0.00 3.21
1762 2197 8.049117 TCAGATCTGCATTTTCACTTAACCTAT 58.951 33.333 18.36 0.00 0.00 2.57
1768 2203 6.182627 ACCATCAGATCTGCATTTTCACTTA 58.817 36.000 18.36 0.00 0.00 2.24
1822 2257 3.181458 TGAATCCGGGGCAAATAGAGTAC 60.181 47.826 0.00 0.00 0.00 2.73
1823 2258 3.042682 TGAATCCGGGGCAAATAGAGTA 58.957 45.455 0.00 0.00 0.00 2.59
1824 2259 1.843851 TGAATCCGGGGCAAATAGAGT 59.156 47.619 0.00 0.00 0.00 3.24
1825 2260 2.158755 ACTGAATCCGGGGCAAATAGAG 60.159 50.000 0.00 0.00 0.00 2.43
1827 2262 2.348411 ACTGAATCCGGGGCAAATAG 57.652 50.000 0.00 0.00 0.00 1.73
1828 2263 2.291282 ACAACTGAATCCGGGGCAAATA 60.291 45.455 0.00 0.00 0.00 1.40
1829 2264 1.185315 CAACTGAATCCGGGGCAAAT 58.815 50.000 0.00 0.00 0.00 2.32
1830 2265 0.178975 ACAACTGAATCCGGGGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
1833 2268 2.052782 ATTACAACTGAATCCGGGGC 57.947 50.000 0.00 0.00 0.00 5.80
1834 2269 4.777463 ACTTATTACAACTGAATCCGGGG 58.223 43.478 0.00 0.00 0.00 5.73
1835 2270 7.852971 TTTACTTATTACAACTGAATCCGGG 57.147 36.000 0.00 0.00 0.00 5.73
1872 2324 5.989777 TGACTGTTAGCTGAAAAGGAACTAC 59.010 40.000 0.00 0.00 38.49 2.73
1893 2346 6.211515 ACAAATGAGCTGTTTCAGAATTGAC 58.788 36.000 0.00 0.00 32.44 3.18
1918 2371 2.484417 CCATACGAGCAAGCCTCTCATT 60.484 50.000 0.00 0.00 38.49 2.57
1920 2373 0.461548 CCATACGAGCAAGCCTCTCA 59.538 55.000 0.00 0.00 38.49 3.27
1934 2387 5.238432 TGTGCCGAAATATGTCATTCCATAC 59.762 40.000 0.00 0.00 30.47 2.39
1947 2400 5.245531 ACTTCTCAAGAATGTGCCGAAATA 58.754 37.500 0.00 0.00 33.01 1.40
1950 2403 3.126001 ACTTCTCAAGAATGTGCCGAA 57.874 42.857 0.00 0.00 33.01 4.30
1952 2405 4.213270 TGTTTACTTCTCAAGAATGTGCCG 59.787 41.667 0.00 0.00 33.01 5.69
1953 2406 5.689383 TGTTTACTTCTCAAGAATGTGCC 57.311 39.130 0.00 0.00 33.01 5.01
1954 2407 6.414987 GTGTTGTTTACTTCTCAAGAATGTGC 59.585 38.462 0.00 0.00 33.01 4.57
1955 2408 6.912591 GGTGTTGTTTACTTCTCAAGAATGTG 59.087 38.462 0.00 0.00 33.01 3.21
1956 2409 6.238374 CGGTGTTGTTTACTTCTCAAGAATGT 60.238 38.462 0.00 0.00 33.01 2.71
1959 2412 5.180271 ACGGTGTTGTTTACTTCTCAAGAA 58.820 37.500 0.00 0.00 0.00 2.52
1960 2413 4.761975 ACGGTGTTGTTTACTTCTCAAGA 58.238 39.130 0.00 0.00 0.00 3.02
1965 2418 3.875134 CCTGAACGGTGTTGTTTACTTCT 59.125 43.478 0.00 0.00 30.75 2.85
1966 2419 3.872771 TCCTGAACGGTGTTGTTTACTTC 59.127 43.478 0.00 0.00 30.75 3.01
1967 2420 3.876341 TCCTGAACGGTGTTGTTTACTT 58.124 40.909 0.00 0.00 30.75 2.24
1968 2421 3.547054 TCCTGAACGGTGTTGTTTACT 57.453 42.857 0.00 0.00 30.75 2.24
1969 2422 4.823790 AATCCTGAACGGTGTTGTTTAC 57.176 40.909 0.00 0.00 30.75 2.01
1971 2424 4.200874 TGTAATCCTGAACGGTGTTGTTT 58.799 39.130 0.00 0.00 30.75 2.83
1972 2425 3.811083 TGTAATCCTGAACGGTGTTGTT 58.189 40.909 0.00 0.00 34.02 2.83
1978 3238 3.143728 GTGGTTTGTAATCCTGAACGGT 58.856 45.455 0.00 0.00 0.00 4.83
1981 3241 4.819630 TGACAGTGGTTTGTAATCCTGAAC 59.180 41.667 0.00 0.00 0.00 3.18
2017 3279 0.690192 ATGTGACGATTGGGTGGTCA 59.310 50.000 0.00 0.00 42.35 4.02
2030 3292 7.693952 TGTTGTTTACTTCTCAAGAATGTGAC 58.306 34.615 0.00 0.67 33.01 3.67
2062 3324 7.435784 CACTGATCTCTGAGAAACATGTGATAG 59.564 40.741 22.98 13.35 0.00 2.08
2253 3524 9.743057 CCAAATTATAAAATGTAAGCCGATTCA 57.257 29.630 0.00 0.00 0.00 2.57
2417 3707 9.421806 GGTTGTTCATGATTCAATAAATGTTGA 57.578 29.630 14.08 0.00 36.38 3.18
2418 3708 8.374728 CGGTTGTTCATGATTCAATAAATGTTG 58.625 33.333 14.08 0.00 0.00 3.33
2419 3709 8.303156 TCGGTTGTTCATGATTCAATAAATGTT 58.697 29.630 14.08 0.00 0.00 2.71
2420 3710 7.825681 TCGGTTGTTCATGATTCAATAAATGT 58.174 30.769 14.08 0.00 0.00 2.71
2421 3711 8.686397 TTCGGTTGTTCATGATTCAATAAATG 57.314 30.769 14.08 6.18 0.00 2.32
2422 3712 8.739039 TCTTCGGTTGTTCATGATTCAATAAAT 58.261 29.630 14.08 0.00 0.00 1.40
2423 3713 8.105097 TCTTCGGTTGTTCATGATTCAATAAA 57.895 30.769 14.08 9.50 0.00 1.40
2424 3714 7.680442 TCTTCGGTTGTTCATGATTCAATAA 57.320 32.000 14.08 9.73 0.00 1.40
2425 3715 7.174080 TGTTCTTCGGTTGTTCATGATTCAATA 59.826 33.333 14.08 4.47 0.00 1.90
2426 3716 6.016360 TGTTCTTCGGTTGTTCATGATTCAAT 60.016 34.615 14.08 0.00 0.00 2.57
2427 3717 5.298026 TGTTCTTCGGTTGTTCATGATTCAA 59.702 36.000 0.00 2.96 0.00 2.69
2428 3718 4.819088 TGTTCTTCGGTTGTTCATGATTCA 59.181 37.500 0.00 0.00 0.00 2.57
2429 3719 5.356882 TGTTCTTCGGTTGTTCATGATTC 57.643 39.130 0.00 0.00 0.00 2.52
2430 3720 5.473162 TGATGTTCTTCGGTTGTTCATGATT 59.527 36.000 0.00 0.00 0.00 2.57
2431 3721 5.003160 TGATGTTCTTCGGTTGTTCATGAT 58.997 37.500 0.00 0.00 0.00 2.45
2432 3722 4.384940 TGATGTTCTTCGGTTGTTCATGA 58.615 39.130 0.00 0.00 0.00 3.07
2433 3723 4.747540 TGATGTTCTTCGGTTGTTCATG 57.252 40.909 0.00 0.00 0.00 3.07
2434 3724 5.473162 TGAATGATGTTCTTCGGTTGTTCAT 59.527 36.000 0.00 0.00 0.00 2.57
2435 3725 4.819088 TGAATGATGTTCTTCGGTTGTTCA 59.181 37.500 0.00 0.00 0.00 3.18
2436 3726 5.179368 TCTGAATGATGTTCTTCGGTTGTTC 59.821 40.000 0.00 0.00 0.00 3.18
2437 3727 5.063204 TCTGAATGATGTTCTTCGGTTGTT 58.937 37.500 0.00 0.00 0.00 2.83
2438 3728 4.641396 TCTGAATGATGTTCTTCGGTTGT 58.359 39.130 0.00 0.00 0.00 3.32
2439 3729 5.808042 ATCTGAATGATGTTCTTCGGTTG 57.192 39.130 0.00 0.00 33.43 3.77
2440 3730 6.824305 AAATCTGAATGATGTTCTTCGGTT 57.176 33.333 0.00 0.00 35.21 4.44
2441 3731 6.349611 CCAAAATCTGAATGATGTTCTTCGGT 60.350 38.462 0.00 0.00 35.21 4.69
2442 3732 6.032094 CCAAAATCTGAATGATGTTCTTCGG 58.968 40.000 0.00 0.00 35.21 4.30
2443 3733 6.615088 ACCAAAATCTGAATGATGTTCTTCG 58.385 36.000 0.00 0.00 35.21 3.79
2444 3734 9.346725 GTTACCAAAATCTGAATGATGTTCTTC 57.653 33.333 0.00 0.00 35.21 2.87
2445 3735 8.859090 TGTTACCAAAATCTGAATGATGTTCTT 58.141 29.630 0.00 0.00 35.21 2.52
2446 3736 8.408043 TGTTACCAAAATCTGAATGATGTTCT 57.592 30.769 0.00 0.00 35.21 3.01
2447 3737 9.474920 TTTGTTACCAAAATCTGAATGATGTTC 57.525 29.630 0.00 0.00 37.62 3.18
2448 3738 9.829507 TTTTGTTACCAAAATCTGAATGATGTT 57.170 25.926 0.00 0.00 43.72 2.71
2516 3806 7.841915 ATTCCAAAACTGTTCGTGAATTTTT 57.158 28.000 0.00 0.00 0.00 1.94
2517 3807 7.976734 TGTATTCCAAAACTGTTCGTGAATTTT 59.023 29.630 13.13 0.00 0.00 1.82
2518 3808 7.484975 TGTATTCCAAAACTGTTCGTGAATTT 58.515 30.769 13.13 0.00 0.00 1.82
2519 3809 7.033530 TGTATTCCAAAACTGTTCGTGAATT 57.966 32.000 13.13 0.00 0.00 2.17
2520 3810 6.627395 TGTATTCCAAAACTGTTCGTGAAT 57.373 33.333 12.73 12.73 0.00 2.57
2521 3811 6.261158 TCATGTATTCCAAAACTGTTCGTGAA 59.739 34.615 0.00 0.00 0.00 3.18
2522 3812 5.760743 TCATGTATTCCAAAACTGTTCGTGA 59.239 36.000 0.00 0.00 0.00 4.35
2523 3813 5.996219 TCATGTATTCCAAAACTGTTCGTG 58.004 37.500 0.00 0.00 0.00 4.35
2524 3814 6.627395 TTCATGTATTCCAAAACTGTTCGT 57.373 33.333 0.00 0.00 0.00 3.85
2525 3815 7.922505 TTTTCATGTATTCCAAAACTGTTCG 57.077 32.000 0.00 0.00 0.00 3.95
2573 3863 9.793252 GTGCAAGTAGATTGTTCATAAATTCAT 57.207 29.630 0.00 0.00 41.29 2.57
2574 3864 9.013229 AGTGCAAGTAGATTGTTCATAAATTCA 57.987 29.630 0.00 0.00 41.29 2.57
2691 3981 8.842280 ACGAAAAGTGTTCAGGATTACATAAAA 58.158 29.630 0.00 0.00 0.00 1.52
2693 3983 7.972832 ACGAAAAGTGTTCAGGATTACATAA 57.027 32.000 0.00 0.00 0.00 1.90
2694 3984 9.661563 AATACGAAAAGTGTTCAGGATTACATA 57.338 29.630 0.00 0.00 27.16 2.29
2695 3985 8.561738 AATACGAAAAGTGTTCAGGATTACAT 57.438 30.769 0.00 0.00 27.16 2.29
2696 3986 7.972832 AATACGAAAAGTGTTCAGGATTACA 57.027 32.000 0.00 0.00 27.16 2.41
2705 3995 8.629986 CAATTGTCATGAATACGAAAAGTGTTC 58.370 33.333 0.00 1.64 46.89 3.18
2706 3996 8.349245 TCAATTGTCATGAATACGAAAAGTGTT 58.651 29.630 5.13 0.00 36.86 3.32
2707 3997 7.870826 TCAATTGTCATGAATACGAAAAGTGT 58.129 30.769 5.13 0.00 28.96 3.55
2708 3998 8.791605 CATCAATTGTCATGAATACGAAAAGTG 58.208 33.333 5.13 0.00 0.00 3.16
2709 3999 8.729756 TCATCAATTGTCATGAATACGAAAAGT 58.270 29.630 5.13 0.00 0.00 2.66
2710 4000 9.558648 TTCATCAATTGTCATGAATACGAAAAG 57.441 29.630 15.14 0.00 34.71 2.27
2713 4003 8.038492 TGTTCATCAATTGTCATGAATACGAA 57.962 30.769 19.69 6.82 40.33 3.85
2715 4005 8.845942 ATTGTTCATCAATTGTCATGAATACG 57.154 30.769 19.69 0.00 43.33 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.